101. Distinct molecular profile of diffuse cerebellar gliomas
- Author
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Tomonari Suzuki, Keisuke Ueki, Ryohei Otani, Hiroyuki Aburatani, Shunsaku Takayanagi, Ryo Nishikawa, Motoo Nagane, Shota Tanaka, Nobuhito Saito, Takahide Nejo, Koichi Ichimura, Takayoshi Umeda, Akitake Mukasa, Keiichi Kobayashi, Hiroki R. Ueda, Shogo Yamamoto, Yoshihiro Muragaki, Masashi Nomura, Satoshi Takahashi, Takashi Maruyama, Kenji Tatsuno, Shiro Fukuda, Yoshitaka Narita, Genta Nagae, Junji Shibahara, and Taishi Nakamura
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Adult ,0301 basic medicine ,SOX10 ,PDGFRA ,Biology ,medicine.disease_cause ,Epigenesis, Genetic ,Pathology and Forensic Medicine ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Cerebellum ,Glioma ,medicine ,Humans ,Genetic Predisposition to Disease ,Epigenetics ,Cerebellar Neoplasms ,Aged ,Aged, 80 and over ,Genetics ,Original Paper ,Mutation ,DNA methylation ,Genomics ,Methylation ,Middle Aged ,medicine.disease ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Gene expression ,Neurology (clinical) ,Carcinogenesis - Abstract
Recent studies have demonstrated that tumor-driving alterations are often different among gliomas that originated from different brain regions and have underscored the importance of analyzing molecular characteristics of gliomas stratified by brain region. Therefore, to elucidate molecular characteristics of diffuse cerebellar gliomas (DCGs), 27 adult, mostly glioblastoma cases were analyzed. Comprehensive analysis using whole-exome sequencing, RNA sequencing, and Infinium methylation array (n = 17) demonstrated their distinct molecular profile compared to gliomas in other brain regions. Frequent mutations in chromatin-modifier genes were identified including, noticeably, a truncating mutation in SETD2 (n = 4), which resulted in loss of H3K36 trimethylation and was mutually exclusive with H3F3A K27M mutation (n = 3), suggesting that epigenetic dysregulation may lead to DCG tumorigenesis. Alterations that cause loss of p53 function including TP53 mutation (n = 9), PPM1D mutation (n = 2), and a novel type of PPM1D fusion (n = 1), were also frequent. On the other hand, mutations and copy number changes commonly observed in cerebral gliomas were infrequent. DNA methylation profile analysis demonstrated that all DCGs except for those with H3F3A mutations were categorized in the “RTK I (PDGFRA)” group, and those DCGs had a gene expression signature that was highly associated with PDGFRA. Furthermore, compared with the data of 315 gliomas derived from different brain regions, promoter methylation of transcription factors genes associated with glial development showed a characteristic pattern presumably reflecting their tumor origin. Notably, SOX10, a key transcription factor associated with oligodendroglial differentiation and PDGFRA regulation, was up-regulated in both DCG and H3 K27M-mutant diffuse midline glioma, suggesting their developmental and biological commonality. In contrast, SOX10 was silenced by promoter methylation in most cerebral gliomas. These findings may suggest potential tailored targeted therapy for gliomas according to their brain region, in addition to providing molecular clues to identify the region-related cellular origin of DCGs. Electronic supplementary material The online version of this article (doi:10.1007/s00401-017-1771-1) contains supplementary material, which is available to authorized users.
- Published
- 2017
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