101. Efficient reamplification of differential display products by transient ligation and thermal asymmetric PCR
- Author
-
Ghislaine Prévot, Sarah Bonnet, Catherine Bourgouin, Université de Guyane (UG), Ecosystemes Amazoniens et Pathologie Tropicale (EPat), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Guyane (UG), Ecologie des Systèmes Vectoriels, Institut Pasteur [Paris] (IP), and This work was supported by fellowships to S.B. (MRT) and G.P. (MRE, FRM and CRG) and research funds from the Pasteur Institute and the UNDP/World Bank/WHO/TDR.
- Subjects
DNA, Complementary ,DNA Ligases ,[SDV]Life Sciences [q-bio] ,Genetic Vectors ,Plasmodium falciparum ,Biology ,Polymerase Chain Reaction ,Sensitivity and Specificity ,law.invention ,03 medical and health sciences ,law ,Complementary DNA ,Anopheles ,Gene expression ,Genetics ,Animals ,Gene ,Polymerase chain reaction ,DNA Primers ,030304 developmental biology ,0303 health sciences ,Differential display ,Base Sequence ,030306 microbiology ,Reproducibility of Results ,Nucleic acid amplification technique ,Molecular biology ,3. Good health ,Evaluation Studies as Topic ,Differential display technique ,Primer (molecular biology) ,Nucleic Acid Amplification Techniques ,Research Article - Abstract
A new method for specific reamplification of DDRT-PCR products is presented. After transient ligation of the primary DDRT-PCR fragments into a T-vector, the cDNAs of interest were reamplified by hemi-nested PCR and thermally asymmetric cycles. In contrast to the originally described protocol, this method of reamplification is specific, sensitive, reproducibly gives a high yield of DNA and allows direct sequencing of the reamplified product without purification or cloning. We used the differential display technique to investigate the effect of a blood meal on the expression of Anopheles gambiae midgutspecific genes and thereby identify genes potentially involved in the sporogonic cycle of the human malaria parasite Plasmodium falciparum. The differential display technique (DDRT-PCR) (1‐3) is a method that can be used for analysis of changes in gene expression by detecting differential production of mRNA and which requires a small amount of RNA. This method has been used successfully to identify a variety of differentially expressed genes (2,4‐6). However, it has some drawbacks such as the large number of false positives generated, and different modifications of the original protocol have been proposed to limit the production of false positives or to facilitate the identification of putative positives (2,7‐10). Another disadvantage is the difficulty in selectively re-amplifying the target cDNA, which is a necessary step in verifying the expression pattern of the DDRT-PCR band ( 8,11). The original procedure for reamplification resulted, in our hands, in poor yields even after two rounds of re-amplification which in most cases generated non-specific PCR products. Furthermore, such direct reamplification often led to the production of fragments which contained the same arbitrary upstream primer at both ends ( 8,9 and unpublished results). These products have no T-tail and may correspond either to mRNA or to contaminating DNA. To circumvent these problems, we developed a procedure for reamplification at high annealing temperature using a transient ligation step (11) and a modified oligo-dT anchored primer (DDT3). To increase the specificity and the yield of the reaction, three hemi-nested reactions are performed with thermal asymmetric cycles (12). Total RNA was isolated from mosquito midguts dissected prior to
- Published
- 1998