137 results on '"R. Vinoth Kumar"'
Search Results
102. Extrusion of impacted mandibular second molar using removable appliance
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M. Karthikeyan, R Vinoth Kumar, Ramachandran Prabhakar, N Raj Vikram, R Saravanan, and R Eshwara Prasath
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Orthodontics ,Molar ,lcsh:QD71-142 ,Unerupted Teeth ,removable appliance ,Impaction ,business.industry ,Dental Science - Case Report ,Treatment outcome ,lcsh:Analytical chemistry ,Dentistry ,lcsh:RS1-441 ,Bioengineering ,Case management ,General Biochemistry, Genetics and Molecular Biology ,Mandibular second molar ,lcsh:Pharmacy and materia medica ,stomatognathic diseases ,mandibular second molar ,stomatognathic system ,Medicine ,General Pharmacology, Toxicology and Pharmaceutics ,business ,unerupted teeth - Abstract
The purpose of this article is to review the principles of case management of impacted mandibular molars and to illustrate their potential to respond well to treatment. Although the scope of treatment may be influenced by the patient's age, past dental history, severity of impaction, dentoalveolar development, and root form, the case reports demonstrate the inherent potential for good treatment outcome even in the most unfavorable circumstances.
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- 2014
103. Removal of methyl orange from synthetic wastewater using analcime-C, MCM-41 and γ-Al<SUB align='right'>2O<SUB align='right'>3 composite membranes
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Kannan Pakshirajan, R. Vinoth Kumar, and Gopal Pugazhenthi
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Environmental Engineering ,Materials science ,Aqueous solution ,Composite number ,Management, Monitoring, Policy and Law ,law.invention ,chemistry.chemical_compound ,Membrane ,chemistry ,law ,visual_art ,visual_art.visual_art_medium ,Methyl orange ,Ceramic ,Crystallization ,Porosity ,Filtration ,Nuclear chemistry - Abstract
The present study describes the fabrication of analcime-C, MCM-41 and γ-Al2O3 composite membranes and their potential in removal of anionic dye from aqueous solution. The hydrothermal crystallisation technique was employed to deposit the charged inorganic oxides such as analcime-C, MCM-41 and γ-Al2O3 on the low cost ceramic support. The formation and purity of analcime-C, MCM-41 and γ-Al2O3 powders were verified by XRD analysis. The porosity, average pore size and water permeability of analcime-C composite membrane were calculated as 24% (23% and 29% for MCM-41 and γ-Al2O3 composite membrane), 0.155 μm (0.173 and 0.970 μm for MCM-41 and γ-Al2O3 composite membrane) and 4.53 × 10−8 m3/m2s.kPa (6.05 × 10−8 and 8.23 × 10−6 m3/m2s.kPa for MCM-41 and γ-Al2O3 composite membrane), respectively. To identify the effectiveness of the prepared composite membranes, applied pressure of the filtration process and initial dye concentration was varied to study their influence on the permeate flux and percentage of dye removal. The results showed that the percentage of dye removal is found to be reduced while increasing applied pressure for all the membranes. The maximum percentage of methyl orange removal was exhibited as 67% for analcime-C, 44% for MCM-41 and 56% for γ-Al2O3 membrane.
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- 2018
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104. Fracture Penis: A Case Report
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R, Vinoth kumar, primary and P, Thamilselvam, additional
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- 2017
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105. Anti-Inflammatory Effects of Ginsenoside-Rh2 Inhibits LPS-Induced Activation of Microglia and Overproduction of Inflammatory Mediators Via Modulation of TGF-β1/Smad Pathway
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Tae Woo Oh, R Vinoth Kumar, and Yong-Ki Park
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0301 basic medicine ,Lipopolysaccharides ,Lipopolysaccharide ,Ginsenosides ,Interleukin-1beta ,Smad Proteins ,SMAD ,Nitric Oxide ,Biochemistry ,Nitric oxide ,Cell Line ,Transforming Growth Factor beta1 ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,medicine ,Animals ,Neuroinflammation ,Microglia ,biology ,Interleukin-6 ,Tumor Necrosis Factor-alpha ,Interleukin ,General Medicine ,Nitric oxide synthase ,030104 developmental biology ,medicine.anatomical_structure ,Neuroprotective Agents ,chemistry ,Cyclooxygenase 2 ,Immunology ,biology.protein ,Cancer research ,Tumor necrosis factor alpha ,Inflammation Mediators ,Nitric Oxide Synthase ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
Microglia activation plays an important role in neuroinflammation and contributes to several neurological disorders. Hence, inhibition of both microglia activation and pro-inflammatory cytokines may lead to the effective treatment of neurodegenerative diseases. In this study, we found that GRh2 inhibited the inflammatory response to lipopolysaccharide (LPS) and prevented the LPS-induced neurotoxicity in microglia cells. GRh2 significantly decreased the generation of nitric oxide production, and tumor necrosis factor-α, interleukin (IL)-6, IL-1β, cyclooxygenase-2 and inducible nitric oxide synthase in LPS-induced activated microglia cells. Furthermore, GRh2 (20 and 50 μM) significantly increased TGF-β1 expression and reduced the expression of Smad. These results suggest that GRh2 effectively inhibits microglia activation and production of pro-inflammatory cytokines via modulating the TGF-β1/Smad pathway.
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- 2015
106. Cross flow ultrafiltration of Cr (VI) using MCM-41, MCM-48 and Faujasite (FAU) zeolite-ceramic composite membranes
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R. Vinoth Kumar, Gopal Pugazhenthi, Ashim Kumar Basumatary, and Aloke Kumar Ghoshal
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Chromium ,Ceramics ,Environmental Engineering ,Materials science ,Health, Toxicology and Mutagenesis ,Ultrafiltration ,Nanotechnology ,02 engineering and technology ,engineering.material ,Waste Disposal, Fluid ,020401 chemical engineering ,Environmental Chemistry ,Ceramic ,0204 chemical engineering ,Zeolite ,Porosity ,Aqueous solution ,Public Health, Environmental and Occupational Health ,Membranes, Artificial ,General Medicine ,General Chemistry ,Faujasite ,021001 nanoscience & nanotechnology ,Silicon Dioxide ,Pollution ,Volumetric flow rate ,Membrane ,Chemical engineering ,visual_art ,engineering ,visual_art.visual_art_medium ,Zeolites ,0210 nano-technology ,Water Pollutants, Chemical - Abstract
This work describes the removal of Cr (VI) from aqueous solution in cross flow mode using MCM-41, MCM-48 and FAU zeolite membranes prepared on circular shaped porous ceramic support. Ceramic support was manufactured using locally available clay materials via a facile uni-axial compaction method followed by sintering process. A hydrothermal technique was employed for the deposition of zeolites on the ceramic support. The porosity of ceramic support (47%) is reduced by the formation of MCM-41 (23%), MCM-48 (22%) and FAU (33%) zeolite layers. The pore size of the MCM-41, MCM-48 and FAU membrane is found to be 0.173, 0.142, and 0.153 μm, respectively, which is lower than that of the support (1.0 μm). Cross flow ultrafiltration experiments of Cr (VI) were conducted at five different applied pressures (69-345 kPa) and three cross flow rates (1.11 × 10(-7) - 2.22 × 10(-7) m(3)/s). The filtration studies inferred that the performance of the fabricated zeolite composite membranes is optimum at the maximum applied pressure (345 kPa) and the highest rejection is obtained with the lowest cross flow rate (1.11 × 10(-7) m(3)/s) for all three zeolite membrane. The permeate flux of MCM-41, MCM-48 and FAU zeolite composite membranes are almost remained constant in the entire duration of the separation process. The highest removal of 82% is shown by FAU membrane, while MCM-41 and MCM-48 display 75% and 77% of Cr (VI) removal, respectively for the initial feed concentration of 1000 ppm with natural pH of the solution at an applied pressure of 345 kPa.
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- 2015
107. IMMIX-intrusion detection and prevention system
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Sarode Harshal Vasudeo, Pravin R. Patil, and R. Vinoth Kumar
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Computer science ,business.industry ,Anomaly-based intrusion detection system ,Network security ,Intrusion detection system ,Computer security ,computer.software_genre ,Misuse detection ,Host-based intrusion detection system ,Anomaly detection ,False positive rate ,business ,Host (network) ,computer ,Computer network - Abstract
Computer security has become a major problem in our society. Specifically, computer network security is concerned with preventing the intrusion of an unauthorized person into a network of computers. An intrusion detection system (IDS) is a tool to monitor the network traffic and users activity with the aim of distinguishing between hostile and non-hostile traffic. Most of current networks implement Misuse detection or Anomaly detection techniques for Intrusion detection. By deploying misuse based IDS it cannot detect unknown intrusions and anomaly based IDS have high false positive rate for detection. To overcome this, proposed system uses combination of both network based and host based IDPS as Hybrid Intrusion Detection and Prevention System which will be helpful for detecting maximum attacks on networks.
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- 2015
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108. In vitro antibacterial effects of red alga Champia parvula (C. Agardh) of various solvents against human pathogenic bacteria
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R, Vinoth Kumar, S, Murugesan, S, Bhuvaneshwari, S, Thennarasan, R, Vinoth Kumar, S, Murugesan, S, Bhuvaneshwari, and S, Thennarasan
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The aim of the present study is to evaluate the antimicrobial inhibitory effect of Champia parvula (red alga) of various solvents at the concentration 100 g/mL, on pathogenic bacteria like Klebsiella pneumoniae, Proteus vulgaris, Bacillus cerus, Bacillus subtilius, Staphylococcus aureus, and Salmonella typhii were studied by the disc diffusion method. The present study reveals that a higher zone of inhibition against Salmonella typhii (15.4 0.2), Bacillus subtilius (13.8 0.1) , Staphylococcus aureus (10.7 0.2) and Proteus vulgaris (10.6 0.1) in the methanol extract alone, followed by acetone, benzene, chloroform, and ethyl acetate extracts showed moderate activity against most of the pathogens, whereas chloroform extract is inactive only against Bacillus cerus. The positive control streptomycin shows inhibitory action against all the pathogens studied. This study shows the potential of marine active compounds from Champia parvula as an antimicrobial agent for a disease free environment.
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- 2016
109. ‘Frosted liver’ appearance
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R. Vinoth Kumar and Venkatraman Indiran
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medicine.medical_specialty ,Radiological and Ultrasound Technology ,business.industry ,Urology ,Gastroenterology ,Hepatology ,Dermatology ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Liver ,Internal medicine ,Tuberculosis, Hepatic ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Tomography, X-Ray Computed ,business ,030217 neurology & neurosurgery - Published
- 2017
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110. Gastrointestinal stromal tumor presenting as gastroduodenal intussusception
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Venkatraman Indiran, Prabakaran Maduraimuthu, and R. Vinoth Kumar
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Male ,medicine.medical_specialty ,Gastrointestinal Stromal Tumors ,Stomach Diseases ,Gastroenterology ,Endoscopy, Gastrointestinal ,X ray computed ,Intussusception (blood vessel growth) ,Internal medicine ,medicine ,Humans ,Gastroduodenal intussusception ,Duodenal Diseases ,Stromal tumor ,Ultrasonography ,medicine.diagnostic_test ,business.industry ,General surgery ,Hepatology ,Endoscopy ,Tomography x ray computed ,Barium ,Tomography, X-Ray Computed ,business ,Intussusception - Published
- 2015
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111. Molecular characterization of Chilli leaf curl virus and satellite molecules associated with leaf curl disease of Amaranthus spp
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Supriya Chakraborty, B. George, and R. Vinoth Kumar
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Perennial plant ,Genes, Viral ,viruses ,Amaranth ,DNA, Satellite ,Polymerase Chain Reaction ,chemistry.chemical_compound ,Open Reading Frames ,Virology ,Plant virus ,Ornamental plant ,Botany ,Genetics ,Alphasatellite ,Molecular Biology ,Phylogeny ,DNA Primers ,Plant Diseases ,Amaranthus ,biology ,Base Sequence ,Host (biology) ,fungi ,Begomovirus ,food and beverages ,General Medicine ,biology.organism_classification ,chemistry ,Leaf curl - Abstract
Amaranthus, collectively known as amaranth, is an annual or short-lived perennial plant used as leafy vegetables, cereals and for ornamental purposes in many countries including India. During 2011, leaf samples of Amaranthus plants displaying leaf curling, leaf distortion, leaf crinkling and yellow leaf margins were collected from Banswara district, Rajasthan in India. Full-length clones of a monopartite begomovirus, a betasatellite and an alphasatellite were characterized. The complete nucleotide sequence of the isolated begomovirus features as a typical 'Old World' begomovirus with the highest nucleotide per cent identity with Chilli leaf curl virus and hence, considered as an isolate of Chilli leaf curl virus. The complete nucleotide sequences of betasatellite and alphasatellite possess maximum nucleotide identity with Tomato yellow leaf curl Thailand betasatellite and Chilli leaf curl alphasatellite, respectively. This is the first report of the association of chilli-infecting begomovirus and satellite molecules infecting a new host, Amaranthus, causing leaf curl disease.
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- 2013
112. Diagnostic value of C-reactive protein in suspected acute appendicitis--a prospective case control study
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R Vinoth, Kumar, R Manoj, Kumar, N S, Pradeep Kumar, and N, Ananthakrishnan
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Adult ,Diagnosis, Differential ,Male ,C-Reactive Protein ,Early Diagnosis ,Acute Disease ,Appendectomy ,Humans ,Female ,Prospective Studies ,Appendicitis ,Prognosis ,Follow-Up Studies - Abstract
To find out the Sensitivity, Specificity and Predictive value of C-reactive protein in the diagnosis of acute appendicitis.Hundred patients undergoing emergency appendicectomy were cases and thirty patients undergoing interval appendicectomy during the same period were controls. Creactive protein was measured pre-operatively.CRP was reactive in 89% of cases and 3 of 30 controls (P = 0). Among the thirteen complicated cases, two had a CRP reactivity of 1.2 mg/dl, eight had 2.4 mg/dl and three had 3.6 mg/dl. In the uncomplicated cases, forty nine were reactive at 1.2 mg/dl, twenty six at 2.4 mg/dl and one at 3.6 mg/dl (P = 0.0009). In histopathologically inflamed appendix, reactivity was 94.4% and in normal appendix reactivity was 40% (P = 0.00007). CRP positivity had a sensitivity of 94.4% (CI 89.9-98.9) and a positive predictive value of 95.5% (CI 91.4-99.6). CRP reactivity and leucocytosis if combined, the sensitivity, specificity, PPV and NPV were 85%, 100%, 100% and 81% respectively. Threshold for CRP reactivity if raised to 2.4 mg/dl, the sensitivity, specificity, PPV and NPV are 42%, 100%, 100% and 16% respectively.CRP estimation is a good 'rule-in' test and not-so-good 'rule-out' test to diagnose acute appendicitis.
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- 2013
113. Fat embolism syndrome managed by non-invasive ventilation--a case report
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R, Ashok, R Vinoth, Kumar, K, Saravanan, and Kalaivani
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Adult ,Male ,Positive-Pressure Respiration ,Oxygen Inhalation Therapy ,Humans ,Embolism, Fat ,Syndrome ,Femoral Fractures - Abstract
A 31-year-old male was struck by a motor cycle and diagnosed to have closed injury to the thigh involving right sided femur shaft fracture. Patient was operated on the next day by the orthopaedic surgeon. The patient did not have any signs of fat embolism syndrome before and after surgery. But the rare ECG change of S1Q3T3 (pulmonary embolism) was present before and after surgery. The presence of oedematous retina and cherry red spots in the macula was also present in the young patient. Patient developed all the classical signs of fat embolism syndrome 18 hours after surgery. The case had classic presentations of fat embolism syndrome managed by non-invasive ventilation. The role of steroids and albumin is also discussed as it was always a controversy in the management of fat embolism syndrome.
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- 2012
114. An improved plant regeneration and Agrobacterium - mediated transformation of red pepper (Capsicum annuum L.)
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Brotati Chattopadhyay, R. Vinoth Kumar, Veerendra Kumar Sharma, and S. Chakraborty
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chemistry.chemical_classification ,Physiology ,Callus formation ,Agrobacterium ,fungi ,food and beverages ,Plant Science ,Biology ,biology.organism_classification ,Hypocotyl ,Murashige and Skoog medium ,chemistry ,Auxin ,Botany ,Shoot ,Pepper ,Molecular Biology ,Explant culture ,Research Article - Abstract
Capsicum annuum (red pepper) is an important spice cum vegetable crop in tropical and subtropical countries. Here, we report an effective and reproducible auxin free regeneration method for six different red pepper cultivars (ACA-10, Kashi Anmol, LCA-235, PBC-535, Pusa Jwala and Supper) using hypocotyl explants and an efficient Agrobacterium-mediated transformation protocol. The explants (hypocotyls, cotyledonary leaves and leaf discs) collected from axenic seedlings of six red pepper cultivars were cultured on either hormone free MS medium or MS medium supplemented with BAP alone or in combination with IAA. Inclusion of IAA in the regeneration medium resulted in callus formation at the cut ends of explants, formation of rosette leaves and ill defined shoot buds. Regeneration of shoot buds could be achieved from hypocotyls grown in MS medium supplemented with different concentrations of BAP unlike other explants which failed to respond. Incorporation of GA3 in shoot elongation medium at 0.5 mg/l concentration enhanced the elongation in two cultivars, LCA-235 and Supper, while other cultivars showed no significant response. Chilli cultivar, Pusa Jwala was transformed with βC1 ORF of satellite DNA β molecule associated with Chilli leaf curl Joydebpur virus through Agrobacterium tumefaciens. Transgene integration in putative transformants was confirmed by PCR and Southern hybridization analysis.
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- 2012
115. Rapid and sensitive detection of major uropathogens in a single-pot multiplex PCR assay
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S. Deepika Swarnam, B. M. Jaffar Ali, Amee Patel, R. Vinoth Kumar, T. Vaidehi, and B. Padmavathy
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biology ,Bacteria ,Klebsiella pneumoniae ,Pseudomonas aeruginosa ,General Medicine ,Urine ,Bacterial Infections ,biology.organism_classification ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,Proteus mirabilis ,Sensitivity and Specificity ,Clinical diagnosis ,Multiplex polymerase chain reaction ,Urinary Tract Infections ,medicine ,Humans ,Escherichia coli ,Multiplex Polymerase Chain Reaction - Abstract
Urinary tract infection (UTI) is among the most common bacterial infections and poses a significant healthcare burden. Escherichia coli is the most common cause of UTI accounting for up to 70 % and a variable contribution from Proteus mirabilis, Pseudomonas aeruginosa and Klebsiella pneumoniae. To establish a complete diagnostic system, we have developed a single-tube multiplex PCR assay (mPCR) for the detection of the above-mentioned four major uropathogens. The sensitivity of the assay was found to be as low as 10(2) cfu/ml of cells. The mPCR evaluated on 280 clinical isolates detected 100 % of E. coli, P. aeruginosa, P. mirabilis and 95 % of K. pneumonia. The assay was performed on 50 urine samples and found to be specific and sensitive for clinical diagnosis. In addition, the mPCR was also validated on spiked urine samples using 40 clinical isolates to demonstrate its application under different strain used in this assay. In total, mPCR reported here is a rapid and simple screening tool that can compete with conventional biochemical-based screening assays that may require 2-3 days for detection.
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- 2011
116. SOC Implementation of HMM Based Speaker Independent Isolated Digit Recognition System
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S. Ravishankar, V. Amudha, R. Vinoth kumar, and B. Venkataramani
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Nios II ,business.industry ,Computer science ,Speech recognition ,Feature extraction ,Viterbi algorithm ,symbols.namesake ,Software ,Viterbi decoder ,symbols ,System on a chip ,business ,Hidden Markov model ,Field-programmable gate array - Abstract
In this paper, the design and implementation results of a system on a chip (SOC) based speech recognition system are presented. The hidden Markov model (HMM) is used for the speech recognition. In order to implement this in SOC, the various tasks required are optimally partitioned between hardware and software. The SOC, housed in Altera UP3 kit, consists of both Altera Nios II soft core processor and custom hardware blocks for computationally intensive blocks such as Viterbi decoder. The preprocessing and training of HMM are implemented in software (using C program). The Viterbi decoding is implemented in hardware for real time recognition. It is also implemented in software for verification and comparison. It is observed that the hardware implementation of Viterbi block is 80 times faster than the software approach using C program. The speech recognition system is trained for digits 0-9 uttered by three male speakers. It is tested with trained speakers utterances and three new untrained speakers' utterances. An over all recognition accuracy of 94.8% is achieved. Extension of this work for larger vocabulary size is under progress
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- 2007
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117. Temporal variation of rainfall trends in parambikulam aliyar sub basin, Tamil Nadu
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I. Muthuchamy and R. Vinoth Kumar
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geography ,geography.geographical_feature_category ,Flood myth ,Ecology ,Drainage basin ,Structural basin ,Biology ,Monsoon ,language.human_language ,Monsoon rainfall ,Water resources ,Tamil ,language ,Non-invasive ventilation ,Physical geography - Abstract
Identification of temporal variation of rainfall trends provides useful information for sustainable planning and management of water resources in a river basin particularly during flood and drought periods. The present study was conducted to determine trends in the annual and seasonal total rainfall over Parambikulam Aliyar sub basin of Tamil Nadu using 30 years (1982–2012) monthly rainfall data at eight rain-gauge stations. The procedure is based on the nonparametric Mann-Kendall test for the trend and the nonparametric Sen's method for the magnitude of the trend. The maximum increase in rainfall was found at Chinnakallar with an annual rainfall of 90.51 mm/year and the maximum reduction in rainfall of -8.60 mm/year was found at Topslip during South West monsoon. Significant positive trend were observed at Weaverly station during North East monsoon rainfall series and significant negative trend has been noticed in the South West monsoon of Topslip.
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- 2014
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118. A new monopartite begomovirus species, Chilli leaf curl Vellanad virus, and associated betasatellites infecting chilli in the Vellanad region of Kerala, India
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Supriya Chakraborty, R. Vinoth Kumar, and Achuit K. Singh
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Health, Toxicology and Mutagenesis ,Begomovirus ,Plant Science ,Biology ,biology.organism_classification ,Virus ,Molecular taxonomy ,Sequence identity ,Capsicum annuum ,Plant virus ,Botany ,Leaf curl ,Taxonomy (biology) ,Agronomy and Crop Science - Abstract
Capsicum annuum (chilli) is one of the most important commercial crops cultivated in the Indian sub-continent for vegetable, spice and industrial purposes. Leaf curl disease of chilli has become a serious problem in the Vellanad district …
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- 2012
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119. Diagnostic value of C-reactive protein in suspected acute appendicitis - A prospective case control study
- Author
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N. Ananthakrishnan, R. Manoj Kumar, N S Pradeep Kumar, and R Vinoth Kumar
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medicine.medical_specialty ,biology ,business.industry ,C-reactive protein ,Case-control study ,General Medicine ,medicine.disease ,Gastroenterology ,Appendicitis ,Appendix ,Surgery ,medicine.anatomical_structure ,Internal medicine ,Acute appendicitis ,medicine ,biology.protein ,Forty Nine ,Differential diagnosis ,Prospective cohort study ,business - Abstract
Aim: To find out the Sensitivity, Specificity and Predictive value of C-reactive protein in the diagnosis of acute appendicitis. Materials and Methods: Hundred patients undergoing emergency appendicectomy were cases and thirty patients undergoing interval appendicectomy during the same period were controls. Creactive protein was measured pre-operatively. Results: CRP was reactive in 89% of cases and 3 of 30 controls (P = 0). Among the thirteen complicated cases, two had a CRP reactivity of 1.2 mg/dl, eight had 2.4 mg/dl and three had 3.6 mg/dl. In the uncomplicated cases, forty nine were reactive at 1.2 mg/dl, twenty six at 2.4 mg/dl and one at 3.6 mg/dl ( P = 0.0009). In histopathologically inflamed appendix, reactivity was 94.4% and in normal appendix reactivity was 40% ( P = 0.00007). CRP positivity had a sensitivity of 94.4% (CI 89.9-98.9) and a positive predictive value of 95.5% (CI 91.4-99.6). CRP reactivity and leucocytosis if combined, the sensitivity, specificity, PPV and NPV were 85%, 100%, 100% and 81% respectively. Threshold for CRP reactivity if raised to 2.4 mg/dl, the sensitivity, specificity, PPV and NPV are 42%, 100%, 100% and 16% respectively. Conclusion: CRP estimation is a good 'rule-in' test and not-so-good 'rule-out' test to diagnose acute appendicitis.
- Published
- 2011
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120. Multi-feature prostate cancer diagnosis of histological images using advanced image segmentation
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K. Vignesh Prabhu, R. Vinoth Kumar, S. Subha Rani, M.S. Nirmal, and A. Kannammal
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Computer science ,business.industry ,Supervised learning ,Biomedical Engineering ,Medicine (miscellaneous) ,Cancer ,Health Informatics ,Image processing ,Pattern recognition ,Image segmentation ,medicine.disease ,Biomaterials ,Prostate cancer ,Naive Bayes classifier ,medicine.anatomical_structure ,Computer-aided diagnosis ,Prostate ,medicine ,Computer vision ,Artificial intelligence ,business - Abstract
We present a study of image features for cancer diagnosis of the histological images of prostate. In diagnosis, the tissue image is classified into the tumour and non-tumour classes. In Gleason grading, which characterises tumor aggressiveness, the image is classified as containing a low- or high-grade tumour. The primary contribution of this paper is to aggregate colour and texture properties at histological object levels for classification. Features representing different visual cues were combined in a supervised learning framework. We also compare the performance of Gaussian, k-nearest neighbour, and Bayesian classifier.
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- 2010
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121. Mucinous cystadenoma of pancreas with honeycombing appearance: Radiological-Pathological correlation
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Beno Jefferson, Indiran Venkatraman, R Vinoth Kumar, Karkuzhali Ponnuswamy, and Prabakaran Maduraimuthu
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cystic ,honeycombing ,mucinous ,pancreatic ,tumors ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Most mucinous cystadenomas of pancreas are solitary and multilocular with a few large compartments. Serous cystadenomas usually have a polycystic or microcystic (honeycomb) pattern consisting of collection of cysts (usually >6) that range from few millimetres up to 2 cm in size. Here we present a case of mucinous cystadenoma of pancreas showing an unusual appearance of honeycombing (which has not been described so far) using imaging studies such as endoscopic ultrasound and computed tomography with histopathological confirmation of the diagnosis.
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- 2018
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122. Clarification of citrus fruit juices using microfiltration technique equipped with indigenously developed novel ceramic membrane.
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Satyannarayana KVV, Sandhya Rani SL, and Vinoth Kumar R
- Abstract
Microfiltration of citrus fruit juices using membrane technology is a promising method for clarification without losing their inherent properties to extend their shelf life. The present work discusses the development of a tubular ceramic microfiltration membrane and its performance in clarifying two kinds of citrus fruit juices, mandarin and sweet orange. The membrane was prepared by the extrusion method from indigenous bentonite clay, exhibited a porosity of 37% with 0.11 μm pore size, and possessed adequate flexural strength of 18 MPa. The fabricated membrane's potential was evaluated by conducting the tangential filtration of both centrifuged and enzyme-treated centrifuged fruit juices. Also, the applied pressure (68.94-344.7 kPa) and crossflow rate (110-150 Lph) were varied to study the clarified juice properties. At low operating conditions, the highest clarity of the juices was identified despite low permeate flux. The desired properties of juices, including pH, citric acid content, and total soluble solids, were unaffected by pretreatment and tangential membrane filtration, whereas the pectin content, which reduces the juice quality, was eliminated entirely. Furthermore, fouling analysis was carried out using Hermia's models, and cake filtration was identified to be dominant for both juices., Supplementary Information: The online version contains supplementary material available at 10.1007/s13197-023-05734-y., Competing Interests: Conflict of interestThe authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© Association of Food Scientists & Technologists (India) 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)
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- 2023
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123. Plant-virus-insect tritrophic interactions: insights into the functions of geminivirus virion-sense strand genes.
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Vinoth Kumar R and Shivaprasad PV
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- Animals, Hemiptera virology, Viral Proteins, Insect Vectors virology, Plant Viruses genetics, Plants virology
- Abstract
The genome of the plant-infecting viruses in the family Geminiviridae is composed of one or two circular single stranded DNA of approximately 2.7-5.2 kb in length. These viruses have emerged as the most devastating pathogen infecting a large number of crops and weeds across the continents. They code for fewer open reading frames (ORFs) through the generation of overlapping transcripts derived from the bidirectional viral promoters. Members of geminiviruses code for up to four ORFs in the virion-sense strand, and their gene expression is regulated by various cis -elements located at their promoters in the intergenic region. These viral proteins perform multiple functions at every stage of the viral life cycle such as virus transport, insect-mediated virus transmission and suppression of host defence. They impede the host's multi-layered antiviral mechanisms including gene silencing (at transcriptional and post-transcriptional levels) and hypersensitive response. This review summarizes the essential role of virion-sense strand encoded proteins in transport of viral genomes within and between plant cells, countering defence in hosts (both plants and the insects), and also in the ubiquitous role in vector-mediated transmission. We highlight the significance of their pro-viral activities in manipulating host-derived innate immune responses and the interaction with whitefly-derived proteins. We also discuss the current knowledge on virus replication and transcription within the insect body.
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- 2020
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124. Association of a begomovirus-satellite complex with yellow vein and leaf curl disease of hollyhock (Alcea rosea) in India.
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Kumar M, Vinoth Kumar R, and Chakraborty S
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- Begomovirus classification, Begomovirus genetics, Begomovirus physiology, India, Phylogeny, Satellite Viruses classification, Satellite Viruses genetics, Satellite Viruses physiology, Begomovirus isolation & purification, Malvaceae virology, Plant Diseases virology, Satellite Viruses isolation & purification
- Abstract
Geminiviruses cause considerable yield loss in several crop plants worldwide. In 2016, several hollyhock plants displaying yellow mosaic and leaf curling symptoms were noticed in a nursery of Jawaharlal Nehru University, New Delhi, India. Analysis of the collected samples indicated an association of monopartite and bipartite begomoviruses with satellites. Three begomoviruses (including a member of a new begomovirus species), two alphasatellites, and a betasatellite were isolated from yellow-mosaic-disease-affected plants. Similarly, a begomovirus, two alphasatellites, and a betasatellite were found to be associated with leaf curl disease of hollyhock. These begomoviruses and satellites were found to be recombinants. By harboring diverse begomoviruses and satellite DNAs, hollyhock may serve as a potential source of virus inoculum.
- Published
- 2020
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125. Comparison of the Periodontal Status of Patients Undergoing Labial and Lingual Orthodontic Therapy.
- Author
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Vijaykumar V, R VK, Archana D, Sekar A, Deepak A, Umapathy V, and P R
- Abstract
Aim To compare the periodontal status in relation to the lower anteriors of patients between labial and lingual orthodontic therapy. Materials and methods The study includes a total of 20 patients in the age group of 20-30 years. All the included patients were selected with limited lower anterior crowding within 0-8 mm. The subjects were randomly divided into two groups: labial (n=10) and lingual (n=10) fixed orthodontic therapy. The periodontal status was evaluated using three indices, plaque index, calculus index, and gingival index, at two different treatment intervals - the first month and the third month - of orthodontic treatment. Results The values of all the three indices at both time intervals were tabulated. There was no statistical significance when compared to the values in the first month. In the third month, all three indices were statistically significant for both labial and lingual therapy (p<0.001). The lingual appliance had more plaque and calculus accumulation. Conclusion Therefore, the study proves that the lingual surface of patients undergoing lingual orthodontic treatment exhibits more plaque and calculus deposition, thereby the weakening of the periodontal status., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2020, Vijaykumar et al.)
- Published
- 2020
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126. Multifaceted role of geminivirus associated betasatellite in pathogenesis.
- Author
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Gnanasekaran P, KishoreKumar R, Bhattacharyya D, Vinoth Kumar R, and Chakraborty S
- Subjects
- Geminiviridae genetics, Genetic Variation, Plant Diseases immunology, Plant Diseases virology, Plants immunology, Plants virology, Virus Replication genetics, DNA, Satellite genetics, Geminiviridae pathogenicity
- Abstract
Begomoviruses have emerged as a group of plant pathogens that cause devastating diseases in a wide range of crops in tropical and subtropical regions of the world. Betasatellites, the circular single-stranded DNA molecules with the size of almost half of that of the associated helper begomoviruses, are often essential for the production of typical disease symptoms in several virus-host systems. Association of betasatellites with begomoviruses results in more severe symptoms in the plants and affects the yield of numerous crops leading to huge agroeconomic losses. βC1, the only protein encoded by betasatellites, plays a multifaceted role in the successful establishment of infection. This protein counteracts the innate defence mechanisms of the host, like RNA silencing, ubiquitin-proteasome system and defence responsive hormones. In the last two decades, the molecular aspect of betasatellite pathogenesis has attracted much attention from the researchers worldwide, and reports have shown that βC1 protein aggravates the helper begomovirus disease complex by modulating specific host factors. This review discusses the molecular aspects of the pathogenesis of betasatellites, including various βC1-host factor interactions and their effects on the suppression of defence responses of the plants., (© 2019 The Authors. Molecular Plant Pathology published by British Society for Plant Pathology and John Wiley & Sons Ltd.)
- Published
- 2019
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127. Enhanced peritoneal stripe sign.
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Indiran V, Vinoth Kumar R, and Jefferson B
- Subjects
- Humans, Peritoneal Cavity diagnostic imaging, Pneumoperitoneum diagnostic imaging, Ultrasonography methods
- Published
- 2018
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128. Dynamics of a geminivirus-encoded pre-coat protein and host RNA-dependent RNA polymerase 1 in regulating symptom recovery in tobacco.
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Basu S, Kumar Kushwaha N, Kumar Singh A, Pankaj Sahu P, Vinoth Kumar R, and Chakraborty S
- Subjects
- Begomovirus physiology, Capsid Proteins genetics, Geminiviridae genetics, Host-Pathogen Interactions, Plant Diseases genetics, Plant Proteins genetics, RNA Interference, RNA-Dependent RNA Polymerase genetics, Nicotiana genetics, Nicotiana virology, Capsid Proteins metabolism, Geminiviridae metabolism, Plant Diseases virology, Plant Proteins metabolism, RNA-Dependent RNA Polymerase metabolism, Nicotiana enzymology
- Abstract
RNA silencing is an integral part of the cellular defense mechanisms in plants that act against virus infection. However, the specific role of RNA silencing and the interplay between host and virus components during recovery from geminivirus infection remains unknown. Hence, in this study we aimed to examine the mechanism behind the host-specific recovery of Nicotiana tabacum infected with Tomato leaf curl Gujarat virus (ToLCGV). Unlike Tomato leaf curl New Delhi virus (ToLCNDV), ToLCGV infection resulted in symptom remission in N. tabacum, and we found that this was mainly due to cross-talk between the pre-coat protein (encoded by the AV2 ORF) of the virus and the host RNA-silencing component RNA-dependent RNA polymerase 1 (encoded by NtRDR1) of N. tabacum. Moreover, apart from the AV2 mutant, other mutants of ToLCNDV developed severe symptoms on a transgenic NtRDR1-overexpression line of N. benthamiana. In contrast, inoculation with ToLCGV resulted in symptom remission, which was due to enhanced methylation of the ToLCGV promoter. Our study reveals a novel 'arms race' in which the pre-coat protein of ToLCNDV selectively blocks the recovery process through inhibiting host-specific RDR1-mediated antiviral silencing in tobacco.
- Published
- 2018
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129. 'Frosted liver' appearance.
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Indiran V and Vinoth Kumar R
- Subjects
- Humans, Liver diagnostic imaging, Tomography, X-Ray Computed methods, Tuberculosis, Hepatic diagnostic imaging
- Published
- 2017
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130. Separation of BSA through FAU-type zeolite ceramic composite membrane formed on tubular ceramic support: Optimization of process parameters by hybrid response surface methodology and biobjective genetic algorithm.
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Vinoth Kumar R, Ganesh Moorthy I, and Pugazhenthi G
- Subjects
- Algorithms, Animals, Cattle, Permeability, Porosity, Pressure, Water chemistry, X-Ray Diffraction, Filtration instrumentation, Membranes, Artificial, Serum Albumin, Bovine isolation & purification, Zeolites chemistry
- Abstract
In this study, Faujasite (FAU) zeolite was coated on low-cost tubular ceramic support as a separating layer through hydrothermal route. The mixture of silicate and aluminate solutions was used to create a zeolitic separation layer on the support. The prepared zeolite ceramic composite membrane was characterized using X-ray powder diffraction (XRD), Fourier transform infrared spectroscopy (FTIR), particle size distribution (PSD), field emission scanning electron microscopy (FESEM), and zeta potential measurements. The porosity of ceramic support (53%) was reduced by the deposition of FAU (43%) zeolite layer. The pore size and water permeability of the membrane were evaluated as 0.179 µm and 1.62 × 10
-7 m3 /m2 s kPa, respectively, which are lower than that of the support (pore size of 0.309 µm and water permeability of 5.93 × 10-7 m3 /m2 s kPa). The permeate flux and rejection potential of the prepared membrane were evaluated by microfiltration of bovine serum albumin (BSA). To study the influences of three independent variables such as operating pressure (68.94-275.79 kPa), concentration of BSA (100-500 ppm), and solution pH (2-4) on permeate flux and percentage of rejection, the response surface methodology (RSM) was used. The predicted models for permeate flux and rejection were further subjected to biobjective genetic algorithm (GA). The hybrid RSM-GA approach resulted in a maximum permeate flux of 2.66 × 10-5 m3 /m2 s and BSA rejection of 88.02%, at which the optimum conditions were attained as 100 ppm BSA concentration, 2 pH solution, and 275.79 kPa applied pressure. In addition, the separation efficiency was compared with other membranes applied for BSA separation to know the potential of the fabricated FAU zeolite ceramic composite membrane.- Published
- 2017
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131. Molecular diversity, recombination and population structure of alphasatellites associated with begomovirus disease complexes.
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Vinoth Kumar R, Singh D, Singh AK, and Chakraborty S
- Subjects
- Abelmoschus virology, Begomovirus classification, Capsicum virology, Gossypium virology, India, Plant Diseases virology, Plant Leaves virology, Sequence Analysis, DNA, Nicotiana virology, Begomovirus genetics, DNA, Satellite genetics, DNA, Viral genetics, Genetic Variation, Phylogeny, Recombination, Genetic
- Abstract
The genus, begomovirus (family Geminiviridae) includes a large number of viruses infecting a wide range of plant species worldwide. The majority of monopartite begomoviruses are associated with satellites (betasatellites) and/or satellite-like molecules (alphasatellites). In spite of the Indo-China region being regarded as the centre of origin of begomoviruses and satellites, a detailed study on the emergence and evolution of alphasatellites in India has not yet conducted. Our present analysis indicated the association of 22 alphasatellites with monopartite and bipartite begomovirus-betasatellite complexes in India. Based on sequence pairwise identity, these alphasatellites were categorized into five distinct groups: Cotton leaf curl alphasatellite, Gossypium darwinii symptomless alphasatellite, Gossypium mustelinum symptomless alphasatellite, Okra leaf curl alphasatellite and an unreported Chilli leaf curl alphasatellite (ChiLCA). Furthermore, infectivity analysis of the cloned ChiLCA along with the viral components of either cognate or non-cognate chilli-infecting begomoviruses on Nicotiana benthamiana suggested that ChiLCA is dispensable for leaf curl disease development. It is noteworthy that in the presence of ChiLCA, a marginal decrease in betasatellite DNA level was noticed. Additionally, high genetic variability and diverse recombination patterns were detected among these alphasatellites, and the nucleotide substitution rate for the Rep gene of ChiLCA was determined to be 2.25×10
-3 nucleotides/site/year. This study highlights the genetic distribution, and likely contribution of recombination and nucleotide diversity in facilitating the emergence of alphasatellites., (Copyright © 2017 Elsevier B.V. All rights reserved.)- Published
- 2017
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132. Anti-Inflammatory Effects of Ginsenoside-Rh2 Inhibits LPS-Induced Activation of Microglia and Overproduction of Inflammatory Mediators Via Modulation of TGF-β1/Smad Pathway.
- Author
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Vinoth Kumar R, Oh TW, and Park YK
- Subjects
- Animals, Cell Line, Cyclooxygenase 2 biosynthesis, Interleukin-1beta biosynthesis, Interleukin-6 biosynthesis, Mice, Microglia metabolism, Nitric Oxide biosynthesis, Nitric Oxide Synthase biosynthesis, Signal Transduction, Tumor Necrosis Factor-alpha biosynthesis, Ginsenosides pharmacology, Inflammation Mediators metabolism, Lipopolysaccharides pharmacology, Microglia drug effects, Neuroprotective Agents pharmacology, Smad Proteins metabolism, Transforming Growth Factor beta1 metabolism
- Abstract
Microglia activation plays an important role in neuroinflammation and contributes to several neurological disorders. Hence, inhibition of both microglia activation and pro-inflammatory cytokines may lead to the effective treatment of neurodegenerative diseases. In this study, we found that GRh2 inhibited the inflammatory response to lipopolysaccharide (LPS) and prevented the LPS-induced neurotoxicity in microglia cells. GRh2 significantly decreased the generation of nitric oxide production, and tumor necrosis factor-α, interleukin (IL)-6, IL-1β, cyclooxygenase-2 and inducible nitric oxide synthase in LPS-induced activated microglia cells. Furthermore, GRh2 (20 and 50 μM) significantly increased TGF-β1 expression and reduced the expression of Smad. These results suggest that GRh2 effectively inhibits microglia activation and production of pro-inflammatory cytokines via modulating the TGF-β1/Smad pathway.
- Published
- 2016
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133. Gastrointestinal stromal tumor presenting as gastroduodenal intussusception.
- Author
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Indiran V, Vinoth Kumar R, and Maduraimuthu P
- Subjects
- Barium, Duodenal Diseases etiology, Duodenal Diseases pathology, Endoscopy, Gastrointestinal, Gastrointestinal Stromal Tumors pathology, Humans, Intussusception etiology, Intussusception pathology, Male, Stomach Diseases etiology, Tomography, X-Ray Computed, Ultrasonography, Duodenal Diseases diagnostic imaging, Gastrointestinal Stromal Tumors complications, Gastrointestinal Stromal Tumors diagnostic imaging, Intussusception diagnostic imaging, Stomach Diseases diagnostic imaging
- Published
- 2015
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134. Modulatory effect of troxerutin on biotransforming enzymes and preneoplasic lesions induced by 1,2-dimethylhydrazine in rat colon carcinogenesis.
- Author
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Vinothkumar R, Vinoth Kumar R, Sudha M, Viswanathan P, Balasubramanian T, and Nalini N
- Subjects
- Aberrant Crypt Foci chemically induced, Aberrant Crypt Foci enzymology, Animals, Anticoagulants therapeutic use, Carcinogens toxicity, Cell Transformation, Neoplastic chemically induced, Colonic Neoplasms chemically induced, Colonic Neoplasms enzymology, Cytochrome P-450 Enzyme System drug effects, Cytochrome P-450 Enzyme System metabolism, Glucuronosyltransferase drug effects, Glucuronosyltransferase metabolism, Glutathione Transferase drug effects, Glutathione Transferase metabolism, Hydroxyethylrutoside therapeutic use, Male, Oxidoreductases drug effects, Oxidoreductases metabolism, Rats, Rats, Wistar, 1,2-Dimethylhydrazine toxicity, Aberrant Crypt Foci drug therapy, Biotransformation drug effects, Cell Transformation, Neoplastic pathology, Colonic Neoplasms drug therapy, Hydroxyethylrutoside analogs & derivatives
- Abstract
Colon cancer is the third most global oncologic problem faced by medical fraternity. Troxerutin, a flavonoid present in tea, coffee, cereal grains, and a variety of fruits and vegetables, exhibits various pharmacological and biological activities. This study was carried out to investigate the effect of troxerutin on xenobiotic metabolizing enzymes, colonic bacterial enzymes and the development of aberrant crypt foci (ACF) during 1,2-dimethylhydrazine (DMH) induced experimental rat colon carcinogenesis. Male albino Wistar rats were randomly divided into six groups. Group 1 served as control. Group 2 received troxerutin (50 mg/kg b.w., p.o. every day) for 16 weeks. Groups 3-6 received subcutaneous injections of DMH (20 mg/kg b.w.) once a week, for the first four weeks. In addition, groups 4-6 received different doses of troxerutin (12.5, 25, 50 mg/kg b.w., p.o. every day respectively) along with DMH injections. Our results reveal that DMH treated rats exhibited elevated activities of phase I enzymes such as cytochrome P450, cytochrome b5, cytochrome P4502E1, NADPH-cytochrome P450 reductase and NADH-cytochrome b5 reductase and reduced activities of phase II enzymes such as glutathione-S-transferase (GST), DT-diaphorase (DTD) and uridine diphospho glucuronyl transferase (UDPGT) in the liver and colonic mucosa of control and experimental rats. Furthermore, the activities of fecal and colonic mucosal bacterial enzymes, such as β-glucronidase, β-glucosidase, β-galactosidase and mucinase were found to be significantly higher in DMH alone treated rats than those of the control rats. On supplementation with troxerutin to DMH treated rats, the alterations in the activities of the biotransforming enzymes, bacterial enzymes and the pathological changes were significantly reversed, the effect being more pronounced when troxerutin was supplemented at the dose of 25 mg/kg b.w. Thus troxerutin could be considered as a good chemopreventive agent against the formation of preneoplastic lesions in a rat model of colon carcinogenesis., (© 2013.)
- Published
- 2014
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135. Oral supplementation with troxerutin (trihydroxyethylrutin), modulates lipid peroxidation and antioxidant status in 1,2-dimethylhydrazine-induced rat colon carcinogenesis.
- Author
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Vinothkumar R, Vinoth Kumar R, Karthikkumar V, Viswanathan P, Kabalimoorthy J, and Nalini N
- Subjects
- 1,2-Dimethylhydrazine, Administration, Oral, Animals, Ascorbic Acid metabolism, Carcinogens, Catalase metabolism, Colon drug effects, Colon metabolism, Colon pathology, Colonic Neoplasms chemically induced, Colonic Neoplasms pathology, Glutathione metabolism, Hydroxyethylrutoside pharmacology, Lipid Peroxidation drug effects, Liver drug effects, Liver metabolism, Male, Rats, Rats, Wistar, Superoxide Dismutase metabolism, Vitamin E metabolism, Antineoplastic Agents pharmacology, Colonic Neoplasms metabolism, Hydroxyethylrutoside analogs & derivatives
- Abstract
The present study was aimed to investigate the chemopreventive potential of troxerutin on 1,2-dimethylhydrazine (DMH) induced rat colon carcinogenesis by evaluating the antioxidant and lipid peroxidation (LPO) status. Rats were randomly divided into six groups. Group I rats served as control. Group II rats received troxerutin (50 mg/kgb.w., p.o.) for 16 weeks. Groups III-VI rats received subcutaneous injections of DMH (20 mg/kgb.w., s.c.) once a week, for the first 4 weeks. In addition to DMH, groups IV-VI rats received troxerutin at the doses of 12.5, 25 and 50 mg/kgb.w., respectively. In DMH treated rats, our results showed decreased activities of antioxidants and increased levels of LPO in the liver. Moreover, LPO and antioxidants in the colon were found to be significantly diminished in DMH the treated rats. Furthermore, enhanced activity of colonic vitamin C and vitamin E levels were observed in DMH alone treated rats (group III), which was significantly reversed on troxerutin supplementation. Troxerutin at the dose of 25 mg/kgb.w. had shown profound beneficial effects by exhibiting near normal biochemical profile and well-preserved colon histology as compared to the other two tested doses (12.5 and 50 mg/kgb.w.). These findings suggest that troxerutin could serve as a novel agent for colon cancer chemoprevention., (Copyright © 2013. Published by Elsevier B.V.)
- Published
- 2014
- Full Text
- View/download PDF
136. Rapid and sensitive detection of major uropathogens in a single-pot multiplex PCR assay.
- Author
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Padmavathy B, Vinoth Kumar R, Patel A, Deepika Swarnam S, Vaidehi T, and Jaffar Ali BM
- Subjects
- Bacteria classification, Bacteria genetics, Bacterial Infections diagnosis, Humans, Sensitivity and Specificity, Urinary Tract Infections diagnosis, Bacteria isolation & purification, Bacterial Infections microbiology, Multiplex Polymerase Chain Reaction methods, Urinary Tract Infections microbiology
- Abstract
Urinary tract infection (UTI) is among the most common bacterial infections and poses a significant healthcare burden. Escherichia coli is the most common cause of UTI accounting for up to 70 % and a variable contribution from Proteus mirabilis, Pseudomonas aeruginosa and Klebsiella pneumoniae. To establish a complete diagnostic system, we have developed a single-tube multiplex PCR assay (mPCR) for the detection of the above-mentioned four major uropathogens. The sensitivity of the assay was found to be as low as 10(2) cfu/ml of cells. The mPCR evaluated on 280 clinical isolates detected 100 % of E. coli, P. aeruginosa, P. mirabilis and 95 % of K. pneumonia. The assay was performed on 50 urine samples and found to be specific and sensitive for clinical diagnosis. In addition, the mPCR was also validated on spiked urine samples using 40 clinical isolates to demonstrate its application under different strain used in this assay. In total, mPCR reported here is a rapid and simple screening tool that can compete with conventional biochemical-based screening assays that may require 2-3 days for detection.
- Published
- 2012
- Full Text
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137. A direct detection of Escherichia coli genomic DNA using gold nanoprobes.
- Author
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Padmavathy B, Vinoth Kumar R, and Jaffar Ali BM
- Subjects
- Bacterial Infections diagnosis, Bacterial Infections microbiology, Biosensing Techniques, DNA Probes chemistry, DNA Probes metabolism, DNA, Single-Stranded chemistry, Humans, Microscopy, Atomic Force, Nucleic Acid Hybridization, Spectrophotometry, Ultraviolet, DNA, Bacterial analysis, Escherichia coli genetics, Gold chemistry, Metal Nanoparticles chemistry
- Abstract
Background: In situation like diagnosis of clinical and forensic samples there exists a need for highly sensitive, rapid and specific DNA detection methods. Though conventional DNA amplification using PCR can provide fast results, it is not widely practised in diagnostic laboratories partially because it requires skilled personnel and expensive equipment. To overcome these limitations nanoparticles have been explored as signalling probes for ultrasensitive DNA detection that can be used in field applications. Among the nanomaterials, gold nanoparticles (AuNPs) have been extensively used mainly because of its optical property and ability to get functionalized with a variety of biomolecules., Results: We report a protocol for the use of gold nanoparticles functionalized with single stranded oligonucleotide (AuNP- oligo probe) as visual detection probes for rapid and specific detection of Escherichia coli. The AuNP- oligo probe on hybridization with target DNA containing complementary sequences remains red whereas test samples without complementary DNA sequences to the probe turns purple due to acid induced aggregation of AuNP- oligo probes. The color change of the solution is observed visually by naked eye demonstrating direct and rapid detection of the pathogenic Escherichia coli from its genomic DNA without the need for PCR amplification. The limit of detection was ~54 ng for unamplified genomic DNA. The method requires less than 30 minutes to complete after genomic DNA extraction. However, by using unamplified enzymatic digested genomic DNA, the detection limit of 11.4 ng was attained. Results of UV-Vis spectroscopic measurement and AFM imaging further support the hypothesis of aggregation based visual discrimination. To elucidate its utility in medical diagnostic, the assay was validated on clinical strains of pathogenic Escherichia coli obtained from local hospitals and spiked urine samples. It was found to be 100% sensitive and proves to be highly specific without any cross reaction with non-Escherichia coli strains., Conclusion: This work gives entry into a new class of DNA/gold nanoparticles hybrid materials which might have optical property that can be controlled for application in diagnostics. We note that it should be possible to extend this strategy easily for developing new types of DNA biosensor for point of care detection. The salient feature of this approach includes low-cost, robust reagents and simple colorimetric detection of pathogen.
- Published
- 2012
- Full Text
- View/download PDF
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