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Microbial anti-cancer enzymes have been proven to be effective and economical agents for cancer treatment. Aeromonas veronii has been identified as a microorganism with the potential to produce L-glutaminase, an anticancer agent effective against acute lymphocytic leukaemia. In this study, a selective medium of Aeromonas veronii was used to culture the microorganism. Strain improvement was done by adaptive and induced mutational techniques. A selective minimal agar media was incorporated for the growth of the strain which further supports adaptive mutation. Strains were also UV-irradiated and successively treated with N-methyl-N'-nitro-N-nitrosoguanidine to find a resilient strain capable of producing L-glutaminase efficiently. The Plackett-Burman design and central composite designs were used to screen and optimize additional carbon and nitrogen sources. Adaptive mutation resulted in promising yield improvements compared to native strain (P<0.001). The mean yield of 30 treated colonies from the induced mutation was significantly increased compared to the non-induced strain (P< 0.001). The economically feasible statistical designs were found to reinforce each other in order to maximize the yield of the enzyme. The interactions of nutrient factors were understood from the 3D response surface plots. The model was found to be a perfect fit in terms of maximizing enzyme yield, with the productivity improving at every stage to a fourfold output of enzyme (591.11 ±7.97 IU/mL) compared to the native strain (135±3.51 IU/mL). [ABSTRACT FROM AUTHOR]

In this study, the alkaline protease-production capacity of a Geobacillus subterraneus C2-1 isolate from the Çitgöl thermal spring was investigated and optimised using a Plackett-Burman experimental design. In addition to the incubation time, which was the most important parameter, other significant factors were the peptone, glucose, and MgSO4.7H2O concentrations, the activation time and the inoculum amount. The highest protease activity of the Geobacillus subterraneus C2-1 isolate was observed using 14.75 g L-1 glucose as the carbon source, 7.51 g L-1 yeast extract as the nitrogen source, an inoculum amount of 3.56%, a temperature of 56.35 °C, and a reaction time of 168 h. In the presence of 1.0 mM SDS, the protease activity did not change and even increased. Furthermore, 100 mM EDTA yielded a five-fold enhancement in specific activity. The presence of chemical denaturants, chelators, and even heavy metals did not alter the protease activity of the C2-1 isolate. [ABSTRACT FROM AUTHOR]

Eight seafood protein hydrolysates (SPHs) obtained from squid, shrimp and fish gelatin were incorporated as substitutes of peptones in culture media in order to evaluate its effect on survival and metabolic activity (lactic acid, acetic acid and bacteriocins production) of Enterococcus faecalis DM19. The substitution of commercial peptones in culture media by either a shrimp hydrolysate prepared with Protamex, or by squid protein hydrolysates prepared with Esperase or Alkaline protease, stimulated E. faecalis DM19 growth up to 16%. The incorporation of SPHs, mainly from shrimp, in the culture media significantly increased production of lactic and acetic acids in more than 60%. Furthermore, the media containing SPHs stimulated antimicrobial activity by E. faecalis DM19. The inhibitory activity was observed against both Gram-positive and Gram-negative microorganisms, but it was remarkably observed against Listeria monocytogenes . SPHs incorporated in culture media render properties of bio-technological interest, which, together with their low price, make them suitable for industrial use. [ABSTRACT FROM AUTHOR]

Production of recombinant proteins in plants through Agrobacterium-mediated transient expression is a promising method of producing human therapeutic proteins, vaccines, and commercial enzymes. This process has been shown to be viable at a large scale and involves growing large quantities of wild-type plants and infiltrating the leaf tissue with a suspension of Agrobacterium tumefaciens bearing the genes of interest. This study examined one of the steps in this process that had not yet been optimized: the scale-up of Agrobacterium production to sufficient volumes for large-scale plant infiltration. Production of Agrobacterium strain C58C1 pTFS40 was scaled up from shake flasks (50-100 mL) to benchtop (5 L) scale with three types of media: Lysogeny broth (LB), yeast extract peptone (YEP) media, and a sucrose-based defined media. The maximum specific growth rate ( μ ) of the strain in the three types of media was 0.46 ± 0.04 h in LB media, 0.43 ± 0.03 h in YEP media, and 0.27 ± 0.01 h in defined media. The maximum biomass concentration reached at this scale was 2.0 ± 0.1, 2.8 ± 0.1, and 2.6 ± 0.1 g dry cell weight (DCW)/L for the three media types. Production was successfully scaled up to a 100-L working volume reactor with YEP media, using k a as the scale-up parameter. [ABSTRACT FROM AUTHOR]

The genus Malassezia includes lipophilic yeasts, which are part of the skin microbiota of various mammals and birds. Unlike the rest of Malassezia species, M. pachydermatis is described as non-lipid-dependent, as it is able to grow on Sabouraud glucose agar (SGA) without lipid supplementation. In this study we have examined the phenotypic variability within M. pachydermatis and confirmed its lipid-dependent nature using a synthetic agar medium. We used a selection of representative non-lipid-dependent strains from different animal species and three atypical lipid-dependent strains of this species, which were not able to grow after multiple passages on SGA. More than 400 lipid-dependent Malassezia isolates from animals were studied in order to detect the three lipid-dependent strains of M. pachydermatis. The identity of the atypical strains was confirmed by DNA sequencing. On the other hand, we have modified the Tween diffusion test, which is widely used in the characterization of these yeasts, by using a synthetic agar-based medium instead of SGA. This modification has proved to be useful for differentiation of M. pachydermatis strains, providing reproducible results and a straightforward interpretation. The finding of these peculiar lipid-dependent strains exemplifies the large variability within the species M. pachydermatis, which involves rare atypical strains with particular growth requirements. [ABSTRACT FROM AUTHOR]

In the present study, production of rhamnolipid biosurfactant by Pseudomonas aeruginosa OG1 was statistically optimized by response surface methodology. Box-Behnken design was applied to determine the optimal concentrations of 52, 9.2, and 4.5 g/L for carbon source (waste frying oil), nitrogen source (chicken feather peptone), and KHPO, respectively, in production medium. Under the optimized cultivation conditions, rhamnolipid production reached up to 13.31 g/L (with an emulsification activity of 80%), which is approximately twofold higher than the yield obtained from preliminary cultivations. Hence, rhamnolipid production, noteworthy in the literature, was achieved with the use of statistical optimization on inexpensive waste materials for the first time in the present study. [ABSTRACT FROM AUTHOR]

In this study, the influence of different physicochemical parameters on the yield of polyhydroxyalkanoates (PHAs) produced by Bacillus cereus FA11 is investigated. The physicochemical factors include pH, temperature, time, inoculum size and its age, agitation speed and composition of the glucose rich peptone deficient (GRPD) medium. During two-stage fermentation, B. cereus FA11 produced a significantly high ( p < 0.05) yield (80.59% w/w) of PHAs copolymer using GRPD medium containing glucose (15 g/L) and peptone (2 g/L) at pH 7, 30 °C and 150 rpm after 48 h of incubation. On the other hand, the presence of olive oil (1% v/v) and peptone (2 g/L) in the GRPD medium resulted in biosynthesis of tercopolymer during two-stage fermentation and the yield of tercopolymer was 60.31% (w/w). The purified PHAs was characterized by Fourier transform infrared spectroscopy and proton resonance magnetic analysis. Proton resonance magnetic analysis confirmed that the tercopolymer was comprised of three different monomeric subunits, i.e., 3-hydroxybutyrate, 3-hydroxyvalerate and 6-hydroxyhexanoate. [ABSTRACT FROM AUTHOR]

A high-performance liquid chromatography method was developed and validated for the quantification of the cytotoxic compounds produced by a marine strain of Aspergillus niger. The fungus was grown in malt peptone dextrose (MPD), potato dextrose yeast (PDY), and mannitol peptone yeast (MnPY) media during 7, 14, 21, and 28 days, and the natural products were identified by standard compounds. The validation parameters obtained were selectivity, linearity (coefficient of correlation > 0.99), precision (relative standard deviation below 5%), and accuracy (recovery > 96). [ABSTRACT FROM AUTHOR]

BACKGROUND The study focused on the biodegradation of pretreated olive mill wastewater ( OMW) properly diluted in and mixed with a biodegradable substrate and/or domestic sewage stream. It utilized the permeate of a chemically conditioned two-stage ultrafiltration/nanofiltration system with COD of 5700 mg L−1 and a total phenol content of 100 mg L−1. Peptone mixture with similar characteristics to domestic sewage was adopted as the biodegradable synthetic substrate. The study relied on two sets of microbial culture; one acclimated to peptone and the other to a mixture of peptone and domestic sewage. Respirometric analyses were conducted on pretreated OMW diluted in the selected substrate using corresponding biomass seeding. RESULTS Model evaluation of the oxygen uptake rate profiles indicated that the pretreated OMW was fully consumed in the respirometric tests. There were no inhibitory/toxic impacts of OMW dosing on the biomass. The entire biomass participated in the utilization of OMW/substrate with no metabolic adjustment problems. CONCLUSION Experimental results provided conclusive evidence that co-treatment with a domestic sewage stream is a viable option for OMW management, after a chemically conditioned two-stage filtration used as the pretreatment step. Pretreatment removes the recalcitrant nature of the wastewater, which becomes fully biodegradable under appropriate dilution and mixing conditions. © 2016 Society of Chemical Industry [ABSTRACT FROM AUTHOR]

The Mexican bean beetle, Epilachna varivestis Mulsant, is an important pest of bean ( Phaseolus vulgaris L.) crops in Mexico and eastern United States. The Beauveria bassiana isolates TM0307 and SyDBbh5001M require large amounts to be effective in the field. Liquid culture medium containing cotton ( Gossypium hirsutum L.) flour was evaluated to improve their virulence against E. varivestes. Virulence of B. bassiana blastospores was evaluated using various culture media and Sabouraud dextrose broth as a control, testing potential of cotton flour versus peptone as a nitrogen source, and colloidal chitin and Lepidoptera exuvia as sources of chitin. Samples were collected every 24 hours, and production of cuticle-degrading proteases (Pr1 and Pr2) and chitinase (NAGase) was determined during 5 days. The lowest enzyme production was observed in Sabouraud dextrose broth and colloidal chitin cultures, whereas the highest production was observed in chitin with cotton flour (Pr1 = 23.2, 2.3, and 126.2 U/ml; Pr2 = 12.7, 2.3, and 48.7 U/ml; NAGase = 5.4, 0.6, and 9.1 U/ml in Sabouraud dextrose broth, colloidal chitin, and chitin with cotton flour cultures, respectively). The LC50 in chitin with cotton flour versus Sabouraud dextrose broth media was evaluated by testing six doses against E. varivestis third-instar larvae; median survival time (ST50) was measured by testing 1 × 108 blastospores per milliliter. Significant lower LC50 and ST50 values were observed by blastospores produced in chitin with cotton flour medium (2.1 ± 1.7 to 2.8 × 106 blastospores per milliliter and 2 days), compared with those on Sabouraud dextrose broth (9.8 ± 6.3 to 15.9 × 106 blastospores per milliliter and 4 days), respectively. Results indicated potential of cotton flour to increase virulence of B. bassiana blastospores against E. varivestis third-instar larvae by enhancing production of insect cuticle-degrading enzymes. [ABSTRACT FROM AUTHOR]

Background The nitration of tyrosine residues in proteins is associated with nitrosative stress, resulting in the formation of 3-nitrotyrosine (3-NT). 1 1 3-NT − 3-nitrotyrosine; ICH − International Conference on Harmonisation; ROS − reactive oxygen species; Try − tyrosine; RNS − reactive-nitrogen species; PYCC − Portuguese Yeast Culture Collection; MEM − Minimal Essential Medium; TSA − Trypticase Soy Agar; YEPD − yeast extract peptone dextrose. 3-NT levels in biological samples have been associated with numerous physiological and pathological conditions. Hence several attempts have been made in order to develop methods that accurately quantify 3-NT in these matrices. The aim of this study was to develop a simple, rapid, low-cost and sensitive high-performance liquid chromatography (HPLC)-based 3-NT quantification method. Methods All experiments were performed on an Hitachi LaChrom Elite ® HPLC system. The method was validated according to International Conference on Harmonisation (ICH) guidelines for serum samples. Additionally, other biological matrices were tested, namely whole blood, urine, B16 F-10 melanoma cell line, growth medium conditioned with the same cell line, bacterial and yeast suspensions. Results From all the protocols tested, the best results were obtained using 0.5% CH 3 COOH:MeOH:H 2 O (15:15:70) as mobile phase, with detection at wavelengths 215, 276 and 356 nm, at 25 °C, and using a flow rate of 1 mL min −1 . By using this protocol, it was possible to obtain a linear calibration curve, limits of detection and quantification in the order of μg L −1 , and a short analysis time (<15 min per sample). The developed protocol allowed the successful detection and quantification of 3-NT in all biological matrices tested, with detection at 356 nm. Conclusion This method, successfully developed and validated for 3-NT quantification, is simple, cheap and fast. These features render this method a suitable option for analysis of a wide range of biological matrices, being a promising useful tool for both research and diagnosis activities. [ABSTRACT FROM AUTHOR]

Benjaminiella poitrasii, a dimorphic zygomycetous fungus contains more chitosan in the mycelial cell wall than the cell wall of its yeast form. The optimized medium containing yeast extract, peptone, MgSO4, KH2PO4, trace metals (Fe2+, Mn2+ Zn2+ and Co2+) solution and 1% starch produced 10-12 g/L(dry wt.) of mycelial biomass in 48 h in a 2L fermenter. Using 1N NaOH treatment, from 1 g of dried biomass 51.00 ± 0.52 mg of chitosan of 42.82 KDa molecular weight and 94.2% degree of deacetylation was extracted. With Metarhizium anisopliae chitin deacetylase (CDA), chitosan yield was 59.00 ± 0.84 mg while treatment with CDA of B. poitrasii it was 78.05 ± 0.58 mg/g of dry wt. of biomass. The chitosan dissolved in 2% acetic acid showed higher antifungal activity against Candida albicans (MIC90 0.025 mg/mL) and Candida glabrata (MIC90 0.2 mg/mL) than chitosan extracted from marine source (MIC90 >1.6 mg/mL) suggesting use of fungal chitosan in healthcare. [ABSTRACT FROM AUTHOR]

As with many living organisms, bacteria often live on the surface of solids, such as foods, organisms, buildings and soil. Compared with dispersive behavior in liquid, bacteria on surface environment exhibit significantly restricted mobility. They have access to only limited resources and cannot be liberated from the changing environment. Accordingly, appropriate collective strategies are necessarily required for long-term growth and survival. However, in spite of our deepening knowledge of the structure and characteristics of individual cells, strategic self-organizing dynamics of their community is poorly understood and therefore not yet predictable. Here, we report a morphological change in Bacillus subtilis biofilms due to environmental pH variations, and present a mathematical model for the macroscopic spatio-temporal dynamics. We show that an environmental pH shift transforms colony morphology on hard agar media from notched ‘volcano-like’ to round and front-elevated ‘crater-like’. We discover that a pH-dependent dose-response relationship between nutritional resource level and quantitative bacterial motility at the population level plays a central role in the mechanism of the spatio-temporal cell population structure design in biofilms. [ABSTRACT FROM AUTHOR]

Objectives: Power production characteristics and substrate concentration dependence of voltage have been investigated together with the determination of kinetic constants in two-chambered mediator-less microbial fuel cells (MFC) for acetate and peptone substrates. Results: At 500 mg DOC l (dissolved organic carbon), power densities normalized to the anode surface of 112 mW m with acetate and 114 mW m with peptone as electron donor were attained by applying cathodes with a Pt catalyst layer. Related anode surface specific substrate removal rate was 44 g DOC m h for acetate and 52 g DOC m h for peptone. Substrate concentration dependency of the voltage suggests Monod-like kinetics with extremely low, <1 mg DOC l, half saturation constants and with final DOC concentrations of 6-10 mg l. Conclusions: Acetate and peptone are equivalent substrates for the exoelectrogenic bacteria both from the point of view of biodegradation kinetics and power production characteristics. [ABSTRACT FROM AUTHOR]

The oomycete class includes pathogens of animals and plants which are responsible for some of the most significant global losses in agriculture and aquaculture. There is a need to replace traditional chemical means of controlling oomycete growth with more targeted approaches, and the inhibition of sterol synthesis is one promising area. To better direct these efforts, we have studied sterol acquisition in two model organisms: the sterol-autotrophic Saprolegnia parasitica, and the sterol-heterotrophic Phytophthora infestans. We first present a comprehensive reconstruction of a likely sterol synthesis pathway for S. parasitica, causative agent of the disease saprolegniasis in fish. This pathway shows multiple potential routes of sterol synthesis, and draws on several avenues of new evidence: bioinformatic mining for genes with sterol-related functions, expression analysis of these genes, and analysis of the sterol profiles in mycelium grown in different media. Additionally, we explore the extent to which P. infestans, which causes the late blight in potato, can modify exogenously provided sterols. We consider whether the two very different approaches to sterol acquisition taken by these pathogens represent any specific survival advantages or potential drug targets. [ABSTRACT FROM AUTHOR]

In the current study, sweet potato peel ( Ipomoea batatas) was observed as the most favorable substrate for the maximum synthesis of α-1,4-glucosidase among various agro-industrial residues. Bacillus licheniformis KIBGE-IB4 produced 6533.0 U ml of α-1,4-glucosidase when growth medium was supplemented with 1% dried and crushed sweet potato peel. It was evident from the results that bacterial isolate secreted 6539.0 U ml of α-1,4-glucosidase in the presence of 0.4% peptone and meat extract with 0.1% yeast extract. B. licheniformis KIBGE-IB4 released 6739.0 and 7190.0 U ml of enzyme at 40 °C and pH 7.0, respectively. An improved and cost-effective growth medium design resulted 8590.0 U ml of α-1,4-glucosidase with 1.3-fold increase as compared to initial amount from B. licheniformis KIBGE-IB4. This enzyme can be used to fulfill the accelerating demand of food and pharmaceutical industries. Further purification and immobilization of this enzyme can also enhance its utility for various commercial applications. [ABSTRACT FROM AUTHOR]

The extensive use of copper compounds for control of bacterial plant pathogens could lead to selecting strains of the pathogens that are copper-resistant. The ability to grow on a medium supplemented with copper, and therefore the concentration of copper to which bacterial strains are resistant, depends on the composition of the medium used for the test. The effects of different peptones (casitone and proteose peptone No. 3) and different media on the ability of strains of Pseudomonas syringae to grow in presence of copper were determined. Similar results were obtained when casitone was substituted with proteose peptone No. 3 in casitone yeast extract medium, but not when those two peptones were interchanged in King's B medium. In water, casitone allowed strains of P. syringae pv. actinidiae (Psa) to grow in the presence of higher amounts of copper than proteose peptone No. 3 did. In all cases, resistance to copper was increased with increased peptone concentration. [ABSTRACT FROM AUTHOR]

The production of bio-ethanol from Rice Straw (Oryza sativa) was carried out using rice straw as a feedstock and a combination of Yeast Extracts Peptone Dextrose (YEPD)at 0.2%(w/v) 0.4%(w/v), 0.6%(w/v), 0.8%(w/v) and 1%(w/v) concentrations and Saccharomyces cerevisiae (yeast) at 0.5% (w/v), 1%(w/v), 1.5%(w/v), 2%(w/v) and 2.5%(w/v) concentrations as cells for fermentation. The study determined the most suitable pre-treatment method from the following pretreatment methods; 1M NaOH and heating. IM NaOH pre-treatment gave the highest cellulose and lowest lignin content. The effects of substrate concentration values of 1g/l, 2g/l, 4g/l, 6g/l and 8g/l; with particle size of 300µm and cell loading combination of YEPD at 0.2%(w/v) 0.4%(w/v), 0.6%(w/v), 0.8%(w/v), 1%(w/v) concentrations and Saccharomyces cerevisiae (yeast) at 0.5% (w/v), 1%(w/v), 1.5%(w/v), 2%(w/v), 2.5%(w/v) on the fermentation process were investigated to obtain optimum conditions of fermentation. The optimum conditions of fermentation were obtained at temperature of 330C, pH value of 4.0, substrate concentration of 4g/l, particle size 300µm and YEPD to yeast ratio of 0.8/1.5 after 72 hours of fermentation time. Also substrate concentration of 4g/l, gave highest bioethanol yield of 49.50%. [ABSTRACT FROM AUTHOR]

Two heterotrophic bacteroidetes strains were isolated as satellites from autotrophic enrichments inoculated with samples from hypersaline soda lakes in southwestern Siberia. Strain Z-1702T is an obligate anaerobic fermentative saccharolytic bacterium from an iron-reducing enrichment culture, while Ca. Cyclonatronum proteinivorum OmegaT is an obligate aerobic proteolytic microorganism from a cyanobacterial enrichment. Cells of isolated bacteria are characterized by highly variable morphology. Both strains are chloride-independent moderate salt-tolerant obligate alkaliphiles and mesophiles. Strain Z-1702T ferments glucose, maltose, fructose, mannose, sorbose, galactose, cellobiose, N -acetyl-glucosamine and alpha-glucans, including starch, glycogen, dextrin, and pullulan. Strain OmegaT is strictly proteolytic utilizing a range of proteins and peptones. The main polar lipid fatty acid in both strains is iso-C 15:0 , while other major components are various C 16 and C 17 isomers. According to pairwise sequence alignments using BLAST Gracilimonas was the nearest cultured relative to both strains (<90% of 16S rRNA gene sequence identity). Phylogenetic analysis placed strain Z-1702T and strain OmegaT as two different genera in a deep-branching clade of the new family level within the order Balneolales with genus. Based on physiological characteristics and phylogenetic position of strain Z-1702T it was proposed to represent a novel genus and species Natronogracilivirga saccharolityca gen. nov., sp. nov. (= DSMZ 109061T =JCM 32930T =VKM B 3262T). Furthermore, phylogenetic and phenotypic parameters of N. saccharolityca and C. proteinivorum gen. nov., sp. nov., strain OmegaT (=JCM 31662T, =UNIQEM U979T), make it possible to include them into a new family with a proposed designation Cyclonatronaceae fam. nov.. [ABSTRACT FROM AUTHOR]

Nitrogen use efficiency is an important index in ruminants and can be indirectly evaluated through the N isotopic discrimination between the animal and its diet (Δ15Nanimal-diet). The concentration and source of N may determine both the extent of the N isotopic discrimination in bacteria and N use efficiency. We hypothesised that the uptake and release of ammonia by rumen bacteria will affect the natural 15N enrichment of the bacterial biomass over their substrates (Δ15Nbacteria-substrate) and thereby further impacting Δ15Nanimal-diet. To test this hypothesis, two independent in vitro experiments were conducted using two contrasting N sources (organic vs inorganic) at different levels either in pure rumen bacteria culture incubations (Experiment #1) or in mixed rumen cultures (Experiment #2). In Experiment #1, tryptone casein or ammonium chloride were tested at low (1 mM N) and high (11.5 mM N) concentrations on three rumen bacterial strains (Fibrobacter succinogenes, Eubacterium limosum and Xylanibacter ruminicola) incubated in triplicate in anaerobic batch monocultures during 48h. In Experiment #2 mixed rumen cultures were incubated during 120 h with peptone or ammonium chloride at five different levels of N (1.5, 3, 4.5, 6 and 12-mM). In experiment #1, Δ15Nbacteria-substrate was lowest when the ammonia-consumer bacterium Fibrobacter succinogenes was grown on ammonium chloride, and highest when the proteolytic bacterial strain Xylanibacter ruminicola was grown on tryptone. In experiment #2, Δ15Nbacteria-substrate was lower with inorganic (ammonium chloride) vs organic (peptone) N source. A strong negative correlation between Δ15Nbacteria-substrate and Rikenellaceae&#95;RC9&#95;gut&#95;group, a potential fibrolytic rumen bacterium, was detected. Together, our results showed that Δ15Nbacteria-substrate may change according to the balance between synthesis of microbial protein from ammonia versus non-ammonia N sources and confirm the key role of rumen bacteria as modulators of Δ15Nanimal-diet., Competing Interests: The authors declare no conflict of interest., (Copyright: © 2023 Cantalapiedra-Hijar et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)

4-Chlorophenol (4-CP) is a persistent organic pollutant commonly found in petrochemical effluents. It causes toxic, carcinogenic and mutagenic effects on human beings and aquatic lives. Therefore, an environmentally benign and cost-effective approach is needed against such pollutants. In this direction, the chlorophenol degrading bacterial consortium consisting of Bacillus flexus GS1 IIT (BHU) and Bacillus cereus GS2 IIT (BHU) was isolated from a refinery site. A composite biocarrier namely polypropylene-polyurethane foam (PP-PUF) was developed for bacterial cells immobilization purpose. A lab-scale moving bed biofilm reactor (MBBR) packed with Bacillus sp. immobilized PP-PUF biocarrier was employed to analyse the effect of peptone on biodegradation of 4-CP. The statistical tool, i.e. response surface methodology (RSM), was used to optimize the process variables (4-CP concentration, peptone concentration and hydraulic retention time). The higher values of peptone concentration and hydraulic retention time were found to be favourable for maximum removal of 4-CP. At the optimized process conditions, the maximum removals of 4-CP and chemical oxygen demand (COD) were obtained to be 91.07 and 75.29%, respectively. In addition, three kinetic models, i.e. second-order, Monod and modified Stover-Kincannon models, were employed to investigate the behaviour of MBBR during 4-CP biodegradation. The high regression coefficients obtained by the second-order and modified Stover-Kincannon models showed better accuracy for estimating substrate degradation kinetics. The phytotoxicity study supported that the Vigna radiata seeds germinated in treated wastewater showed higher growth (i.e. radicle and plumule) than the untreated wastewater., (© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)

Helicobacter pylori (H. pylori) is an obligate microaerobion and does not survive in low oxygen. Sodium sulfite (SS) reacts and consume oxygen in solutions. The present study aimed to investigate the effects of SS on H. pylori. The effects of SS on oxygen concentrations in solutions and on H. pylori in vivo and in vitro were examined, and the mechanisms involved were explored. The results showed that SS decreased the oxygen concentration in water and artificial gastric juice. In Columbia blood agar and special peptone broth, SS concentration-dependently inhibited the proliferation of H. pylori ATCC43504 and Sydney strain-1 in Columbia blood agar or special peptone broth, and dose-dependently decreased the number of H. pylori in Mongolian gerbils and Kunming mouse infection models. The H. pylori was relapsed in 2 weeks withdrawal and the recurrence in the SS group was lower than that in the positive triple drug group. These effects were superior to positive triple drugs. After SS treatments, the cell membrane and cytoplasm structure of H. pylori were disrupted. SS-induced oxygen-free environment initially blocked aerobic respiration, triggered oxidative stress, disturbed energy production. In conclusion, SS consumes oxygen and creates an oxygen-free environment in which H. pylori does not survive. The present study provides a new strategy and perspective for the clinical treatment of H. pylori infectious disease., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Inc. All rights reserved.)

The diversity of bacteria associated with biopsy material obtained from patients with colorectal cancer was investigated using culture techniques. A novel bacterium, strain CC70A T , was isolated by diluting a sample of homogenized tissue in anaerobic medium, and then plating to yield a pure culture. Strain CC70A T was a Gram-positive, strictly anaerobic, motile, rod-shaped bacterium. Formate, but not acetate, was a fermentative end-product from growth in peptone-yeast extract and peptone-yeast-glucose broth. The G+C content of DNA from strain CC70A T was 34.9 mol%. 16S rRNA gene sequence analysis revealed that the isolate was part of the phylum Bacillota . The closest described relatives of strain CC70A T were Cellulosilyticum lentocellum (93.3 %) and Cellulosilyticum ruminicola (93.3 and 91.9% sequence similarity across 16S rRNA gene, respectively). According to the data obtained in this work, strain CC70A T represents a novel bacterium belonging to a new genus for which the name Holtiella tumoricola gen. nov., sp. nov. is proposed. The type strain for our described novel species is CC70A T (=DSM 27931 T = JCM 30568 T ).

Here we propose a novel culture medium, Meat Extract Casein Peptone (MECP) agar, to support the enumeration of Bacillus endospores in commercial products. The formulation is the result of screening eight different veterinary, pharmaceutical, and industrial grade peptones for the ability to support the formation of small, well-defined Bacillus colonies on solid culture medium. The impact of agar purity, agar formulation rate, and metal cation additives were examined in prototype medium batches prepared from preferred peptone inputs. A customized plate counting assay based on the resultant MECP agar formulation was compared with standardized pour-plate and spread-plate assays (ISO 4833) and flow cytometry for the ability to accurately enumerate five Bacillus -based biostimulants and biofertilizers. Estimations of Bacillus endospore concentration generated by the customized spread-plate assay were significantly higher than those produced by ISO 4833 pour-plate and spread-plate assays for four out of the five tested products and were in better agreement with flow cytometry values; however, flow cytometry values were numerically higher than values returned by both plating methods. Both flow cytometry and plating assays based on MECP or similar culture media represent potential candidates for standardization and validation through organizations such as ISO and AOAC International for the enumeration of Bacillus -based products. • Nutrient inputs impact the morphology of Bacillus colonies on agar plates. • Metal cations impact the morphology of Bacillus colonies on agar plates. • Custom plating assays return higher counts than ISO pour plate and spread plate assays. • Flow cytometry and custom plating are preferred over ISO methods for Bacillus enumeration. [ABSTRACT FROM AUTHOR]

Ganoderma lucidum is a medicinal mushroom widely recognized as a source of biomolecules with pharmacological properties, however, little is known about the factors that influence the synthesis of bioactive proteins by this fungus when cultivated under submerged fermentation. The objective of this work was to evaluate the production of mycelial biomass and intracellular proteases and protease inhibitors by G. lucidum cultivated under different submerged fermentation conditions. The cultivation was carried out in a medium composed of glucose (10 or 20 g.L-1), soy peptone (2.5 or 5 g.L-1) and yeast extract (5 g.L-1), with incubation under agitation (120 rpm) and non-agitation, totaling 8 experimental conditions. Biomass production was determined from the dry weight, while glucose consumption was estimated by quantification of reducing sugars. The proteins were extracted in NaCl (0.15 M), and the protein extracts were submitted to protein quantification by the Bradford method, total proteolytic activity using azocasein, caseinolytic and fibrinolytic activity in Petri dishes, activity of serine (trypsin and chymotrypsin) and cysteine (papain) protease inhibitors. Cultivation in agitated condition showed higher biomass production with a maximum value of 7 g.L-1, in addition to higher activities of trypsin, chymotrypsin and papain inhibitors, with 154 IU.mg-1, 153 IU.mg-1 e 343 IU.mg-1 of protein, respectively. The non-agitated condition showed a greater potential for obtaining proteins, total proteases, caseinolytic and fibrinolytic enzymes, with maximum values of 433 mg.g-1 of extract, 71 U.mL-1 of extract, 63.62 mm2 and 50.27 mm2, respectively. Thus, a medium composed of soy peptone, yest extract and glucose in a 1:2:4 proportion is recommended, under agitation to produce protease inhibitors, and the non-agitated condition when the target is, mainly caseinolytic and fibrinolytic enzymes.

Cordyceps militaris is a medicinal mushroom in Asia in the 21st century, which cordycepin is a significant bioactive compound. This study, investigated the effect of culture conditions and vegetable seed extract powder as a supplementary source of animal-free nitrogen on the production of cordycepin by C. militaris in liquid surface culture. The highest cordycepin production was observed under soybean extract powder (SBEP) conditions, and 80 g L-1 of SBEP supplementation increased cordycepin production to 2.52 g L-1, which was greater than the control (peptone). Quantitative polymerase chain reaction was used to examine the transcription levels, and the results showed that supplementing with SBEP 80 g L-1 significantly increased the expression of genes associated with the carbon metabolic pathway, amino acid metabolism, and two key genes involved in the cordycepin biosynthesis (cns1 and NT5E) compared to peptone-supplemented culture. Under optimal culture conditions, the model predicted a maximum response of cordycepin production of 2.64 g L-1 at a working volume of 147.5 ml, an inoculum size of 8.8% v/v, and a cultivation time of 40.0 days. This optimized culture condition could be used to increase cordycepin production in large-scale bioreactors. Additional research can be conducted to assess the economic viability of this process., (© The Author(s) 2023. Published by Oxford University Press on behalf of Applied Microbiology International.)

Pectic-Oligosaccharides (POS) have a growing potential in food and feed industries. To satisfy the demand of worldwide markets from POS and avoid the shortcomings of currently applied methodologies encountered in their preparation, the present study highlights a novel robust approach for POS biosynthesis. In the current approach, Aspergillus sp.section Flavi strain EGY1 DSM 101520 was grown on citrus pectin-based medium as a core POS production medium. POS' levels accumulated in the fungal fermentation broth were optimized through a three step sequential statistical mathematical methodology; Plackett-Burman design (PBD), Box-Behnken design (BBD) and canonical analysis. Three key determinants namely citrus pectin, peptone and NaH2PO4 were pointed out by PBD to impose significant consequences (P<0.05) on the process outcome (POS' levels). Optimal levels of these key determinants along with maximal of POS' levels were set by BBD and canonical analysis to be 2.28% (w/v) citrus pectin, 0.026% (w/v) peptone and 0.28% (w/v) NaH2PO4 to achieve a net amount of 1.3 g POS /2.28 g citrus pectin. Through this approach, a yield of 57% (w/w) POS of the total citrus pectin was obtained after 24 h of fungal growth on optimized citrus pectin–based medium. A fold enhancement of 13 times in POS' levels released in the fermentation fungal broth was realized by the end of the optimization strategy. This novel robust approach is considered a new insight towards POS biosynthesis via efficient, rapid and non-cumbersome procedure. To the best of authors' knowledge, the present work is the first article underlining detailed POS production from the fermentation broth of a fungus growing on citrus pectin-based medium. [ABSTRACT FROM AUTHOR]

The industrial production of chitin generates large volumes of protein effluents that need to be handled and depurated before discharge. The current study highlights the suitability of four effluents, derived from the chemical and enzymatic hydrolysis of Illex argentinus pen to produce β-chitin, as peptones for the growth and metabolite production of six bacteria with different nutrient requirements. Batch cultures were carried out determining the growths by dry weight and viable cell counts and modelling kinetics using the logistic equation. Two lactic acid bacteria were perfectly supported by alternative media formulated with chitin effluents and the results were better than those found in commercial ones. For the other four bacteria, the biomasses in chitin peptones were lower but the number of produced cells was similar to those defined using Marine medium (MM) and tryptone-soy broth (TSB). An economic assessment demonstrated the profitability achieved when commercial peptones are replaced by those generated from squid pen: reduction of costs by 6 times for lactic acid bacteria, 50-100 times for marine bacteria and 6–17 times for Gram (+) bacteria. [ABSTRACT FROM AUTHOR]

Food waste is ideal for producing energy and value-added chemicals (e.g., biohydrogen and volatile fatty acids (VFAs)) in biorefineries. The main food waste components are carbohydrates, proteins, and lipids. Three substrates (glucose, peptone, and glycerol, representing carbohydrates, proteins, and lipids, respectively) were acidogenically fermented in this study. For each substrate, we investigated fermentation type and VFAs produced. We used a stoichiometric approach to identify the metabolic pathways through which the substrates were converted. The maximum VFA concentrations for glucose, peptone, glycerol, and a mixture were 38.2, 32.2, 31.1, and 38.5 gCOD/L, respectively. Mixing the substrates increased VFA production, indicating that synergistic effects between microorganisms improved acidogenic fermentation. Different fermentation types occurred for different substrates. Butyric, acetic, and propionic acids were the main products for glucose, peptone, and glycerol, respectively. Glucose was metabolized through three pathways. The metabolism of glycerol was similar to glucose through the “glycerol-pyruvate-VFA” pathway. [ABSTRACT FROM AUTHOR]

A total of 102 honey samples collected from small apiaries (≤ 20 hives) in Poland were analysed for the presence of Clostridium botulinum spores. The samples were prepared using the dilution centrifugation method and cultured in parallel in cooked meat medium (CMM) and tripticase peptone glucose yeast (TPGY) enrichment broths. Identification of toxin types A, B, and E of Clostridium botulinum strains was performed with the use of the multiplex PCR method. Positive samples were also subjected to quantitative analysis with the use of Clostridium botulinum Isolation Agar Base (CBAB). The prevalence analysis showed 22 (21.6%) samples contaminated with C. botulinum spores. The major serotype detected was botulin neurotoxin type A - 16 (72.7%) whereas type B was found in 3 (13.6%) honey samples and type E also only in 3 (13.6%) honey samples. Dual-toxin-producing strains were noted. The average quantity of spores in PCR - C. botulinum positive samples was 190 in 1 gram of honey. [ABSTRACT FROM AUTHOR]

Significant factors on simultaneous growth and bioaccumulation of arsenic ions by living cells of bacteria,Corynebacterium glutamicumMTCC 2745, were explored in growth media under experimental conditions like pH and concentrations of arsenic ions. Combined effects of the initial concentrations of peptone and arsenic (either As(III) or As(V)) ions on the specific growth rate and arsenic bioaccumulation competence of the bacteria were studied and optimized using the Response Surface Methodology. Optimum combination predicted via RSM demonstrated that the bacteria were capable of bioaccumulating As(III) and As(V) in the growth medium containing 1000 mg/L arsenic and 9 g/L peptone up to 78.4% and 77.6%, respectively. [ABSTRACT FROM AUTHOR]

BACKGROUND The cost of peptone is often a major contributor to costs in the fermentation industry. A novel method for preparation of peptone from chicken bone residue by using natural pancreas as catalyst was developed in this study, aiming to provide a way to convert waste into valuable peptone. RESULTS The molecular weight of chicken bone extract ( CBE) hydrolyzed with pancreas or its combination with trypsin ranges between 100 and 1000 Da after 4 h of hydrolysis. CBE hydrolyzed with pancreas (5%, w/w) for 4 h shows higher degree of hydrolysis (DH) (23.60%) than that of 0.5% trypsin, and higher polypeptides and free amino acids content than that of 0.5% trypsin and 1% pancreas. Thus, it was selected for yeast, bacteria and fungi incubation, with commercial casein peptone as a control. Saccharomyces cerevisiae shows a similar growth curve in both media during 36 h incubation. Although Bacillus subtilis shows a longer lag phase (14 h) in chicken bone hydrolysate ( CBH) than in the control (6 h), significantly higher OD600 in CBH was obtained after 24 h incubation ( P<0.05). Both Escherichia coli and Aspergillus oryzae grew better in CBH than in the control. CONCLUSION The proposed process for inexpensive peptone production provides an effective way to utilize animal bone wastes, and the alternative peptone has widespread application in fermentation industry. © 2016 Society of Chemical Industry [ABSTRACT FROM AUTHOR]

Surface properties of a nonhydrophobic fraction of proteose-peptone (NHFPP) and a hydrophobic fraction of proteose-peptone (HFPP), obtained by hydrophobic interaction chromatography, were investigated. Adsorption of NHFPP and HFPP on the surface activity of total proteose-peptone (TPP) followed a competitive mechanism, especially during the penetration phase and molecular rearrangements. Compression of mixed monolayers was used to study the miscibility of NHFPP and HFPP within TPP films. When NHFPP was mixed with HFPP, in a TPP film, both fractions were immiscible at the beginning of adsorption; they only became miscible when the polypeptide chains had moved from the surface to the aqueous phase, thus allowing a better organisation of proteins. The equation of excess free energy of compression was used to determine the interactions of NHFPP HFPP within the TPP film through the mixed monolayer (thermodynamic properties); interactions between NHFPP and HFPP appeared less important than those that occurred between molecules within each fraction. [ABSTRACT FROM AUTHOR]

Unlike Saccharomyces cerevisiae, the methylotrophic yeast Pichia pastoris can assimilate amino acids as the sole source of carbon and nitrogen. It can grow in media containing yeast extract and peptone (YP), yeast nitrogen base (YNB) + glutamate (YNB+Glu), or YNB+aspartate (YNB+Asp). Methanol expression regulator 1 (Mxr1p), a zinc finger transcription factor, is essential for growth in these media. Mxr1p regulates the expression of several genes involved in the utilization of amino acids as the sole source of carbon and nitrogen. These include the following: (i) GDH2 encoding NAD-dependent glutamate dehydrogenase; (ii) AAT1 and AAT2 encoding mitochondrial and cytosolic aspartate aminotransferases, respectively; (iii) MDH1 and MDH2 encoding mitochondrial and cytosolic malate dehydrogenases, respectively; and (iv) GLN1 encoding glutamine synthetase. Synthesis of all these enzymes is regulated by Mxr1p at the level of transcription except GDH2, whose synthesis is regulated at the level of translation. Mxr1p activates the transcription of AAT1, AAT2, and GLN1 in cells cultured in YP as well as in YNB + Glu media, whereas transcription of MDH1 and MDH2 is activated in cells cultured in YNB - Glu but not in YP. A truncated Mxr1p composed of 400 N-terminal amino acids activates transcription of target genes in cells cultured in YP but not in YNB + Glu. Mxr1p binds to Mxr1p response elements present in the promoters of AAT2, MDH2, and GLN1. We conclude that Mxr1p is essential for utilization of amino acids as the sole source of carbon and nitrogen, and it is a global regulator of multiple metabolic pathways in P. pastoris. [ABSTRACT FROM AUTHOR]

The cDNA gene ( BgL1), encoding GH3 family β-glucosidase (EC 3.2.1.21) from Aspergillus niger BE-2 (abbreviated to BgL1), was amplified and inserted into the yeast expression pPIC9K vector at the site of Bln I ( Avr II) and NotI. The recombinant expression vector, designated as pPIC9K- BgL1, was transformed into Pichia pastoris GS115. The transformants were screened on minimal dextrose plates, which inoculated on geneticin G418-containing yeast extract-peptone-dextrose plates. The transformants expressed the high β-glucosidase activity of 22.6 U/mL. SDS-PAGE demonstrated that the BgL1 was extracellularly expressed with an apparent molecular weight of 90.0 kDa. The purified BgL1 displayed the maximum activity at pH 6.0 and 60°C. It was highly stable at a broad pH range of 4.0-7.5 and temperature of 60°C. The BgL1 displayed high similarity to the β-glucosidases of A. niger FN430671 and A. niger DQ655704, the members of the GH3 family. Its three-dimensional structure was predicted using http://swiss-model.expasy.org/ on-line programs based on the crystal structure of Aspergillus aculeatus β-glucosidase. [ABSTRACT FROM AUTHOR]

The ability of Campylobacter to grow aerobically in media supplemented with fumarate-pyruvate or with dairy, meat, or soy extracts or peptones was examined. Optical densities (OD) of Campylobacter cultured in basal media, media supplemented with fumarate-pyruvate or with 1.0, 2.5, 5.0, or 7.5% beef extract was measured. Growth was also compared in media supplemented with other extracts or peptones. Finally, cfu/mL of Campylobacter recovered from basal media or media supplemented with fumarate-pyruvate, casamino acids, beef extract, soytone, or beef extract and soytone was determined. Results indicated that OD of cultures grown in media supplemented with fumarate-pyruvate or with 5.0 or 7.5% beef extract were higher than OD of isolates grown in basal media or media supplemented with lower concentrations of beef extract. Highest OD were produced by isolates grown in media supplemented with beef extract, peptone from meat, polypeptone, proteose peptone, or soytone. Also, more cfu/mL were recovered from media with fumarate-pyruvate, beef extract, soytone, or beef extract-soytone than from basal media or media with casamino acids. Findings indicate that media supplemented with organic acids, vitamins, and minerals and media supplemented with extracts or peptones containing these metabolites can support aerobic growth of Campylobacter . [ABSTRACT FROM AUTHOR]