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103. Bodenuntersuchung

Author

Daikuhara, G., Truog, E., Michaelis, L., Sharp, L. T., Hoogland, D. R., Noyes, H. A., Arrhenius, O., Lipman, C. B., Christensen, H. R., Parker, F. W., Kappen, H., Densch, A., Rippel, A., Arnd, Th., Schreiner, O., Loges, G., Ramann, E., Cameron, F. K., Ulbricht, R., Wolf, W., Jani, W., Biéler-Chatelan, Mitscherlich, E. A., Davis, C. W., Davisson, B. S., Neubauer, H., Schneider, W., Czapek, Fr., Wunder, G., Greisenegger, J. K., Vorbuchner, K., Niklas, H., Hirschberger, and Ausschuss für Boden und Düngung des Verbandes Landwirtschaftlicher Versuchs-Stationen im Deutschen Reiche

Published
1924
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108. The Quality of Methods Reporting in Parasitology Experiments

Author

Bisser, S, Florez-Vargas, O, Bramhall, M, Noyes, H, Cruickshank, S, Stevens, R, Brass, A, Bisser, S, Florez-Vargas, O, Bramhall, M, Noyes, H, Cruickshank, S, Stevens, R, and Brass, A

Abstract

There is a growing concern both inside and outside the scientific community over the lack of reproducibility of experiments. The depth and detail of reported methods are critical to the reproducibility of findings, but also for making it possible to compare and integrate data from different studies. In this study, we evaluated in detail the methods reporting in a comprehensive set of trypanosomiasis experiments that should enable valid reproduction, integration and comparison of research findings. We evaluated a subset of other parasitic (Leishmania, Toxoplasma, Plasmodium, Trichuris and Schistosoma) and non-parasitic (Mycobacterium) experimental infections in order to compare the quality of method reporting more generally. A systematic review using PubMed (2000-2012) of all publications describing gene expression in cells and animals infected with Trypanosoma spp was undertaken based on PRISMA guidelines; 23 papers were identified and included. We defined a checklist of essential parameters that should be reported and have scored the number of those parameters that are reported for each publication. Bibliometric parameters (impact factor, citations and h-index) were used to look for association between Journal and Author status and the quality of method reporting. Trichuriasis experiments achieved the highest scores and included the only paper to score 100% in all criteria. The mean of scores achieved by Trypanosoma articles through the checklist was 65.5% (range 32-90%). Bibliometric parameters were not correlated with the quality of method reporting (Spearman's rank correlation coefficient <-0.5; p>0.05). Our results indicate that the quality of methods reporting in experimental parasitology is a cause for concern and it has not improved over time, despite there being evidence that most of the assessed parameters do influence the results. We propose that our set of parameters be used as guidelines to improve the quality of the reporting of experimental infection

Published
2014

112. UCLA International Conference: “Few Particle Problems in the Nuclear Interaction” August 1972

Author

Afnan, Iraj R., primary, Allas, Richard G., additional, Amado, Ralph D., additional, Antolkovic, B., additional, Arman, Moosa, additional, Aslanides, Elie A., additional, Avishai, Yshai, additional, Bacher, R.F., additional, Ali, M., additional, Alt, Erwin O., additional, Amaldi, Ugo, additional, Anzelon, George A., additional, Arvieux, Jacques, additional, Aviles, Joseph B., additional, Axen, David A., additional, Baer, Helmut W., additional, Ballot, Jean-Louis, additional, Barnes, Peter D., additional, Baumann, Paule, additional, Beard, G., additional, Victor, Exec., additional, Belyaev, Vladimir B., additional, Beregi, Peter, additional, Berggren, Tore K.H., additional, Beurtey, R., additional, Bhasin, Vidya S., additional, Bonbright, Daniel I., additional, Barbini, Roberto, additional, Barrett, Bruce R., additional, Beam, John E., additional, Beer, George A., additional, Benn, Joachim E., additional, Blair, Ian M., additional, Bertsch, George, additional, Bhakar, Balram Singh, additional, Birchall, James, additional, Bondelid, R.O., additional, Bonner, Billy E., additional, Boyard, Jean-Louis, additional, Brady, Thomas J., additional, Breunlich, Wolfgang H., additional, Brown, Gerald, additional, Brown, Virginia R., additional, Cameron, John M., additional, Cernigoi, Cesare, additional, Chemarin, Michel, additional, Chemtob, Marc, additional, Bosco, Bernardino, additional, Brady, F.Paul, additional, Brayshaw, David D., additional, Brolley, John E., additional, Brown, Ronald E., additional, Brückmann, Hanno, additional, Carlson, Richard F., additional, Chang, Chia-Cheh, additional, Cheng, Vianney K., additional, Ciftan, Mikael, additional, Clement, David M., additional, Cole, Robert K., additional, Conzett, Homer E., additional, Costa, Sergio, additional, Cramer, John G., additional, Cujec, Bibiana, additional, Day, Benjamin D., additional, Delacroix, Etienne A., additional, De Swart, Johan J., additional, Ebenhoh, W., additional, Eisenberg, J., additional, Cohen, Harold L., additional, Comiso, Josefino C., additional, Cooper, Larry R., additional, Cowley, Anthony A., additional, Crowe, Kenneth M., additional, Davis, Jay C., additional, de Botton, Nico, additional, De La Ripelle, M.F., additional, Didelez, Jean-Pierre, additional, Edgington, John A., additional, Eisenstein, Robert A., additional, El Baz, Edgard, additional, Eramzhyan, Roudolf A., additional, Ferreira, Erasmo, additional, Fiedeldey, Harry H., additional, Frascaria, Robert, additional, Furic, M., additional, Gemmeke, Hartmut, additional, Gignoux, Claude, additional, Glodis, Paul F., additional, Goulard, Gisele, additional, Epstein, Martin B., additional, Fiarman, Sidney, additional, Forster, H.H., additional, Frois, Bernard A., additional, Gal, Avraham, additional, Gibson, Benjamin F., additional, Glavish, Hilton F., additional, Gorodetzky, Philippe, additional, Guaraldo, Carlo, additional, Greenless, George W., additional, Griss, Martin L., additional, Gruebler, Willi E., additional, Haase, Ernst L., additional, Hadjimichael, E., additional, Hall, James E., additional, Heiss, Peter, additional, Hennell, Michael A., additional, Hofstadter, Robert, additional, Hussein, Mahir S., additional, Gregoire, Ghislain, additional, Gross, Franz L., additional, Gugelot, P.C., additional, Haddock, Roy P., additional, Halbert, Melvyn L., additional, Harms, Edward A., additional, Henley, Ernest M., additional, Holmgren, Harry D., additional, Huffman, Arthur H., additional, Hu, Chi-Yu, additional, Ingram, C.H., additional, Jain, Mahavir, additional, Jarmie, Nelson, additional, Jones, Garth, additional, Karlsson, B.R., additional, Kilian, Kurt, additional, Kim, Yeong E., additional, King, Nicholas S.P., additional, Kok, Lambrecht P., additional, Kremer, Peter, additional, Jackson, Daphne F., additional, Jacquot, Claude, additional, Johansson, Arne, additional, Jonanovich, Jovan, additional, Kharchenko, V.F., additional, Kim, C.C., additional, Kisslinger, L., additional, Kluge, Wolfgang, additional, Komarov, V.V., additional, Laget, Jean-Marc, additional, Lambert, James M., additional, Langevin-Joliot, H., additional, Lehman, Elliot Stephen, additional, Levin, Frank S., additional, Liou, Ming-kung, additional, Lodhi, M.A.K., additional, Mack, Gunther, additional, Margaziotis, Demitrius J., additional, McCarthy, Ian E., additional, McKee, James S.C., additional, Mett, N.P., additional, Lang, Lang, additional, Langworthy, James B., additional, Leung, K.C., additional, Lim, T.K., additional, Locher, Milan P., additional, Lynen, Uli, additional, Makino, Motoji, additional, Pierre, Marmier, additional, McDonald, F. Alan, additional, McMillan, Malcolm, additional, Meyerhof, Walter E., additional, Michelotti, Leo P., additional, Miller, Charles A., additional, Moazed, Cyrus, additional, Morlet, Marcel, additional, Moszkowski, Steven A., additional, Nakamura, Hiroshi, additional, Nixon, Gary D., additional, Noyes, H. Pierre, additional, Oberhummer, Heinz, additional, Ohlsen, Gerald G., additional, Miljanic, Duro, additional, Mitra, A.N., additional, Moravcsik, Michael J., additional, Munch, Stephan X., additional, Nagatani, K., additional, Narboni, Philippe R., additional, Noble, Julian V., additional, Nunberg, Paolo, additional, O'Connell, James S., additional, Paic, G., additional, Petersen, Edward L., additional, Phillips, Gerald C., additional, Pieper, Steven C., additional, Piragino, Guido, additional, Primakoff, Henry, additional, Radvanyi, Pierre C., additional, Remler, Edward A., additional, Riska, Dan Olof, additional, Robertson, Lyle P., additional, Rogers, Joel G., additional, Rosen, Louis, additional, Phillips, Anthony C., additional, Picciotto, Charles E., additional, Pniewski, Jerzy, additional, Priou, Maurice P., additional, Reid, Roderick V., additional, Richardson, J.Reginald, additional, Roberts, David J., additional, Rodney, William S., additional, Romero, J.L., additional, Roy, Rene, additional, Saavedra, Igor, additional, Salzman, Gary C., additional, Sandhu, H.S., additional, Sauer, Peter U., additional, Saylor, Dwight P., additional, Schmid, Erich W., additional, Seitaro, Nakamura, additional, Shanley, Paul E., additional, Sharma, Tilak C., additional, Sherif, Helmy S., additional, Salomon, Martin, additional, Sandhas, Werner, additional, Sasakawa, Tatuya, additional, Saxon, David S., additional, Schick, Lee H., additional, Scrimaglio, Renato, additional, Seki, Seiji, additional, Shannon, Darwin L., additional, Shcherbakov, Yuri A., additional, Shively, Frank T., additional, Signell, Peter S., additional, Simonius, Markus, additional, Slaus, Ivo, additional, Slobodrian, Maria L.V.L., additional, Sobel, Michael I., additional, Sood, P.C., additional, Stephenson, Gerard J., additional, Sundquist, Bo, additional, Tagesen, Siegfried, additional, Thomann, Christoph E., additional, Simmons, James E., additional, Sitenko, A.G., additional, Sloan, I.H., additional, Slobodrian, Rodolfo, additional, Sober, Daniel I., additional, Spencer, James E., additional, Strottman, Daniel, additional, Sunier, Jules W., additional, Thiessen, Henry A., additional, Thompson, Gary, additional, Tin, Edmund S., additional, Tomas, Peter, additional, Treado, P.A., additional, Truoel, Peter, additional, Tzara, Christophe, additional, van Dantzig, René, additional, van Wageningen, Riek, additional, Vergados, Jannis D., additional, von Witsch, Wolfram H., additional, Wagner, Gerhard J., additional, Watson, John W., additional, Tjon, John A., additional, Tombrello, Thomas A., additional, True, William W., additional, Turchinetz, William E., additional, Ung-Thi, Tuyet-Anh, additional, van Oers, W.T.H., additional, Verba, John W., additional, Vogel, Petr, additional, Wapstra, Aaldert H., additional, Weidenmuller, Hans A., additional, Weiss, Morton S., additional, Werren, David, additional, Wielinga, Robert, additional, Willmes, Henry, additional, Wong, Chun W., additional, Yanabu, Takuji, additional, Young, John C., additional, Zeitnitz, Bernhard, additional, Zupancic, C., additional, Weneser, Joseph, additional, Westlund, Wayne A., additional, Wilkinson, Denys H., additional, Wolfe, David M., additional, Wright, Byron T., additional, Yuasa, Toshiko, additional, Zeiger, Enrique M., additional, and Zingl, H., additional

Published
1972
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114. Phylogeny, taxonomy and grouping of Trypanosoma rangeli isolates from man, triatomines and sylvatic mammals from widespread geographical origin based on SSU and ITS ribosomal sequences

Author

Da Silva, Flávia Maia, Noyes, H., Campaner, M., Junqueira, A. C., Coura, J. R., Añez Reverol, Nestor Oswaldo, Shaw, J., Stevens, J. R., and Teixeira, Marta M.G.

Subjects
Trypanosoma lewisi, Herpetosoma, Artículos, South American trypanosomes, Brazilian Amazon, Polymorphism, Facultad de Ciencias, Trypanosoma rangeli, Phylogeny, Taxonomy
Abstract

Phylogenetic relationships among Trypanosoma rangeli isolates from man, wild mammals and triatomine bugs from widespread geographical origin were inferred by comparison of the small subunit of ribosomal gene sequences. The phylogenetic trees indicated that the subgenus Herpetosoma is polyphyletic and strongly supported division of this group into two monophyletic lineages, one made up of T. rangeli, T. rangeli-like and allied species and other consisting of T. lewisi and related taxa. Based on phylogenetic analysis, morphology, behaviour in vertebrate and invertebrate hosts and epidemiology we propose: a) the validation of Herpetosoma as a taxon comprised only for species of group lewisi and the maintenance of T. lewisi as the type-species of this subgenus; b) the classification of T. rangeli, T. rangeli-like and allied species into a ‘T. rangeli-clade’ more closely related to Schizotrypanum than to T. lewisi or T. brucei. The phylogenetic tree disclosed at least 4 groups within the clade T. rangeli, all confirmed by polymorphism of the internal transcribed spacer, thus conferring for the first time phylogenetic support to groups of T. rangeli and corroborating the high complexity of this taxon. Grouping was independent of their mammalian host-species and geographical origin, indicating that other factors are determining this segregation. 549-561 nanes@ula.ve

Published
2004

117. Discussion of Pat Suppes' paper

Author

Batterman, R. W., primary, Chirikov, B., additional, Miller, D., additional, Noyes, H. P., additional, Schurz, G., additional, Suppes, P., additional, and Weingartner, P., additional

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118. Discussion of David Miller's paper

Author

Batterman, R. W., primary, Miller, D., additional, Noyes, H. P., additional, Schurz, G., additional, Schuster, P., additional, Strack, H.-B., additional, Suppes, P., additional, Weingartner, P., additional, and Wunderlin, A., additional

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119. Discussion of Paul Weingartner's paper

Author

Chirikov, B., primary, Miller, D., additional, Noyes, H. P., additional, Noyes, G., additional, Schurz, G., additional, Suppes, P., additional, Weingartner, P., additional, and Wunderlin, A., additional

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123. Discussion of Gerhard Schurz' paper

Author

Batterman, R. W., primary, Chirikov, B., additional, Miller, D., additional, Noyes, H. P., additional, Schurz, G., additional, Suppes, P., additional, and Weingartner, P., additional

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130. Leishmania donovani is the only cause of visceral leishmaniasis in East Africa; previous descriptions of L. infantum and 'L. archibaldi' from this region are a consequence of convergent evolution in the isoenzyme data

Author

Jamjoom, M B, Ashford, R W, Bates, P A, Chance, M L, Kemp, S J, Watts, P C, Noyes, H A, Jamjoom, M B, Ashford, R W, Bates, P A, Chance, M L, Kemp, S J, Watts, P C, and Noyes, H A

Abstract

Isoenzyme-based studies have identified 3 taxa/species/'phylogenetic complexes' as agents of visceral leishmaniasis in Sudan: L. donovani, L. infantum and "L. archibaldi". However, these observations remain controversial. A new chitinase gene phylogeny was constructed in which stocks of all 3 putative species isolated in Sudan formed a monophyletic clade. In order to construct a more robust classification of the L. donovani complex, a panel of 16 microsatellite markers was used to describe 39 stocks of these 3 species. All "L. donovani complex" stocks from Sudan were again found to form a single monophyletic clade. L. donovani ss stocks from India and Kenya were found to form 2 region-specific clades. The partial sequence of the glutamate oxaloacetate transaminase (GOT) gene of 17 L. donovani complex stocks was obtained. A single nucleotide polymorphism in the GOT gene appeared to underlie the isoenzyme classification. It was concluded that isoenzyme-based identification is unsafe for stocks isolated in L. donovani endemic areas and identified as L. infantum. It was also concluded that the name L. archibaldi is invalid and that only a single visceralizing species, Leishmania donovani, is found in East Africa.

Published
2004

141. Towards a standard battery of microsatellite markers for the analysis of the Leishmania donovani complex

Author

Jamjoom, M B, Ashford, R W, Bates, P A, Kemp, S J, Noyes, H A, Jamjoom, M B, Ashford, R W, Bates, P A, Kemp, S J, and Noyes, H A

Abstract

The investigation of microsatellite markers has recently superseded that of isoenzymes for many population-biology applications. Microsatellites have the advantages of being dominant, neutral, highly polymorphic and easily scored by high-throughput methods. However, it is necessary to develop a new panel of markers for each group of organisms of interest. Previously, only about 5% of the markers that amplify Leishmania major microsatellite loci were also found to amplify L. donovani loci. A panel of 20 microsatellite markers that are polymorphic in L. donovani and L. infantum has now been developed, using a rapid-enrichment method that will be suitable for developing libraries of markers for other trypanosomatid species. This is the first panel of polymorphic microsatellite markers, to be isolated de novo from any species of Leishmania, that is large enough for population-biology applications.

Published
2002

145. Quantitative trait loci for resistance to Heligmosomoides bakeri and associated immunological and pathological traits in mice: comparison of loci on chromosomes 5, 8 and 11 in F2 and F6/7 inter-cross lines of mice

Author

BEHNKE, J. M., primary, MENGE, D. M., additional, NAGDA, S., additional, NOYES, H., additional, IRAQI, F. A., additional, KEMP, S. J., additional, MUGAMBI, R. J. M., additional, BAKER, R. L., additional, WAKELIN, D., additional, and GIBSON, J. P., additional

Published
2009
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146. SLAC-PUB-8779: Observational Evidence for Two Cosmological Predictions Made by Bit-String Physics

Author

Noyes, H. Pierre. and Noyes, H. Pierre.

Abstract

This pre-print from the Stanford Linear Accelerator Center (SLAC) covers string theory and dark matter, in particular the baryon/ photon ratio at the time of nucleogenesis. The theories presented are not in disagreement with actual cosmological data, including that from BOOMERANG. This pre-print may be downloaded for free in .pdf or .ps format.

Published
2001

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