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The treatment of newborns with esophageal atresia (EA) and tracheoesophageal fistula (TEF) is associated with a great logistic effort. The aim of the presented study was to analyse the possibility to influence the time of surgery.Data from 30 neonates with EA and TEF regarding the date and mode of birth, biometric data and preoperative acid-base and blood gas values were collected retrospectively. The newborns were divided into two subgroups: birth between Monday and Thursday ("week"), and birth from Friday to Sunday ("weekend").We observed a seasonal peak of births in November/December. The rate of prenatal ultrasound detection of polyhydramnions was 40%. In 14 of 16 cases with Caesarean section, maternal or foetal problems predicted the date and mode of delivery. In both groups, most newborns had an unimpaired postnatal adaptation. There were no significant differences regarding biometry. Delivery at the weekend was associated with later surgical repair (second vs. first day of life). Repeated estimations of acid-base and blood gas parameters over a median time span of 13 hours revealed a stable situation with a trend to normalisation.The time of birth is multifactorial and, in most cases, can neither be predicted nor influenced. Stable respiratory and metabolic parameters in the majority of patients allow a surgical intervention within a limited time frame during the first days of life.As it is hardly possible to plan the surgical procedure, an experienced team as well as neonatal intensive care facilities and operation room access must be available throughout the week.

Selective breeding is an effective tool to improve livestock. Several selection experiments have been conducted to study direct selection responses as well as correlated responses in traits of skeletal muscle growth and function. Moreover, comparisons of domestic with wild-type species and of extreme breeds provide information on the genetic background of the skeletal muscle phenotype. Structural muscular components that differed with increasing distance in lean growth or meat quality in mammals were found to be myofibre number, myofibre size, proportions of fibre types as well as the numbers and proportions of secondary and primary fibres. Furthermore, markers of satellite cell proliferation, metabolic enzyme activities, glycogen and fat contents, the expression of myosin heavy chain isoforms, of activated AMPKα and other proteins in skeletal muscle tissue and circulating IGF1 and IGF-binding proteins have been identified to be involved in selection responses observed in pigs, cattle and/or chicken. The use of molecular methods for selective breeding of fish has only recently been adopted in aquaculture and studies of the genetic basis of growth and flesh quality traits are scarce. Some of the molecular markers of muscle structure/metabolism in livestock have also been identified in fish, but so far no studies have linked them with selection response. Genome scans have been applied to identify genomic regions exhibiting quantitative trait loci that control traits of interest, for example, muscle structure and meat quality in pigs and growth rate in chicken. As another approach, polymorphisms in candidate genes reveal the relationship between genetic variation and target traits. Thus, in large-scale studies with pigs' associations of polymorphisms in the HMGA2, CA3, EPOR, NME1 and TTN genes with traits of carcass and meat quality were detected. Other studies revealed the significance of mutations in the IGF2 and RYR1 genes for carcass lean and muscle fibre traits in pigs. Mutations in the myostatin (MSTN) gene in fish were also examined. Advances in research of the genetic and environmental control of traits related to meat quality and growth have been made by the application of holistic 'omics' techniques that studied the whole muscle-specific genome, transcriptome and proteome in relation to muscle and meat traits, the development of new methods for muscle fibre typing and the adaptation of biophysical measures to develop parameters of muscle fibre traits as well as the application of in vitro studies. Finally, future research priorities in the field are defined. Copyright © 2010 The Animal Consortium.

Skeletal muscle development in vertebrates - also termed myogenesis - is a highly integrated process. Evidence to date indicates that the processes are very similar across mammals, poultry and fish, although the timings of the various steps differ considerably. Myogenesis is regulated by the myogenic regulatory factors and consists of two to three distinct phases when different fibre populations appear. The critical times when myogenesis is prone to hormonal or environmental influences depend largely on the developmental stage. One of the main mechanisms for both genetic and environmental effects on muscle fibre development is via the direct action of the growth hormone-insulin-like growth factor (GH-IGF) axis. In mammals and poultry, postnatal growth and function of muscles relate mainly to the hypertrophy of the fibres formed during myogenesis and to their fibre-type composition in terms of metabolic and contractile properties, whereas in fish hyperplasia still plays a major role. Candidate genes that are important in skeletal muscle development, for instance, encode for IGFs and IGF-binding proteins, myosin heavy chain isoforms, troponin T, myosin light chain and others have been identified. In mammals, nutritional supply in utero affects myogenesis and the GH-IGF axis may have an indirect action through the partitioning of nutrients towards the gravid uterus. Impaired myogenesis resulting in low skeletal myofibre numbers is considered one of the main reasons for negative long-term consequences of intrauterine growth retardation. Severe undernutrition in utero due to natural variation in litter or twin-bearing species or insufficient maternal nutrient supply may impair myogenesis and adversely affect carcass quality later in terms of reduced lean and increased fat deposition in the progeny. On the other hand, increases in maternal feed intake above standard requirement seem to have no beneficial effects on the growth of the progeny with myogenesis not or only slightly affected. Initial studies on low and high maternal protein feeding are published. Although there are only a few studies, first results also reveal an influence of nutrition on skeletal muscle development in fish and poultry. Finally, environmental temperature has been identified as a critical factor for growth and development of skeletal muscle in both fish and poultry. Copyright © 2010 The Animal Consortium.

Intrauterine growth restriction (IUGR), resulting in low birth body weight (LBW) occurs naturally in pigs. However, IUGR may also cause persistent changes in physiology and metabolism resulting in poorer performance, organogenesis and meat quality. As IUGR pigs have a lower daily gain from birth to slaughter they may differ in utilization of nutrients and requirements for dietary protein compared with their larger littermates. Thus, the objective in this study was to examine the interaction between birth body weight (BW) and the postnatal dietary protein level, in relation to postnatal performance, organogenesis, muscle metabolism and meat quality. The experiment was carried out with offspring from 16 purebred Danish Landrace gilts mated to Danish Landrace boars. The female and entire male pigs with LBW that survived at weaning were compared with the female and male pigs with the highest/high birth body weight (HBW) within each litter. The offspring were reared individually from weaning and were fed ad libitum a diet containing either a normal level of protein (NP) for optimal growth or an isocaloric diet containing a 30% lower protein content (LP) from 3 weeks to 150 days of age. At slaughter, we found no interactions between birth weight group and dietary protein level for any of the measured traits. The relative crown–rump length (cm/kg) at birth indicates that LBW pigs were thinner than HBW pigs. Daily gain and feed intake were reduced by 14% and 10%, respectively, while the kg feed/kg gain was slightly increased by 3% in LBW pigs compared with HBW pigs. The LP diet reduced daily gain by 27% due to reduced feed intake and increased kg feed/kg gain by 12% and 21%, respectively compared with the NP diet. LBW male pigs produced meat with a higher shear force than male HBW pigs and also LP pigs produced meat with higher shear force than NP pigs. The activity of lactate dehydrogenase in the Longissimus dorsi muscle (LD) was reduced in pigs fed the LP diet. Calpastatin was increased in LD of LBW pigs and decreased in pigs fed the NP diet. In conclusion, these results suggest a rejection of our hypothesis that low birth weight littermates have a lower requirement for dietary protein compared with heavy weight littermates. Furthermore, LBW male pigs and LP fed pigs of both genders produced less tender meat than HBW pigs or NP fed pigs, respectively.

A climatology of cyclones with a focus on their relation to wind storm tracks in the Mediterranean region (MR) is presented. Trends in the frequency of cyclones and wind storms, as well as variations associated with the North Atlantic Oscillation (NAO), the East Atlantic/West Russian (EAWR) and the Scandinavian variability pattern (SCAND) are discussed. The study is based on the ERA40 reanalysis dataset. Wind storm tracks are identified by tracking clusters of adjacent grid boxes characterised by extremely high local wind speeds. The wind track is assigned to a cyclone track independently identified with an objective scheme. Areas with high wind activity – quantified by extreme wind tracks – are typically located south of the Golf of Genoa, south of Cyprus, southeast of Sicily and west of the Iberian Peninsula. About 69% of the wind storms are caused by cyclones located in the Mediterranean region, while the remaining 31% can be attributed to North Atlantic or Northern European cyclones. The North Atlantic Oscillation, the East Atlantic/West Russian pattern and the Scandinavian pattern all influence the amount and spatial distribution of wind inducing cyclones and wind events in the MR. The strongest signals exist for the NAO and the EAWR pattern, which are both associated with an increase in the number of organised strong wind events in the eastern MR during their positive phase. On the other hand, the storm numbers decrease over the western MR for the positive phase of the NAO and over the central MR during the positive phase of the EAWR pattern. The positive phase of the Scandinavian pattern is associated with a decrease in the number of winter wind storms over most of the MR. A third of the trends in the number of wind storms and wind producing cyclones during the winter season of the ERA40 period may be attributed to the variability of the North Atlantic Oscillation.

Accurate estimates of soybean root productivity are needed to estimate carbon (C) inputs to soil. Soil excavation and coring methods were compared where soybean was subject to ambient, elevated carbon dioxide (CO2) and ozone (O3) treatments. We evaluated within‐season changes in biomass and shoot–root production, labor requirements, and damage to plots. Estimates of root biomass were similar, but excavation‐based estimates required less total time. Core‐based estimates provided similar levels of precision, allowed sampling of deeper depths, and reduced both plot disturbance and the amount of effort devoted to tasks performed in the field. Correlations between root and shoot biomass were weak and varied with time of sampling. Collectively, results suggest caution should be exercised when making predictions about C allocation to roots or soils based on shoot–root ratios or when scaling up field‐based findings to predict larger or longer‐scale trends.

The greatest threat to human well-being in this century is climate change and related global issues.We examined the effectiveness of the Modified Instrumentalism in Occupational Therapy model as a framework for facilitating occupational behaviour change to address climate change and related issues.Eleven individuals participated in this mixed-methods single-subject-design study. Data were gathered using the Modified Assessment and Intervention Instrument for Instrumentalism in Occupational Therapy and Daily Occupational Inventories. Quantitative data were analyzed using two- and three-standard deviation band methods. Qualitative data were analyzed using heuristic phenomenological procedures.Occupational performance changed for five participants. Participants' feelings shifted from frustration and helplessness to empowerment and a desire for action. They felt empowered to find occupation-based solutions to the global issues.Occupation-based interventions that increase personal awareness of the connection between occupational performance and global issues could empower people to be agents for action to ameliorate the issues.

Frail older people typically suffer several chronic diseases, receive multiple medications and are more likely to be institutionalized in residential aged care facilities. In such patients, optimizing prescribing and avoiding use of high-risk medications might prevent adverse events. The present study aimed to develop a pragmatic, easily applied algorithm for medication review to help clinicians identify and discontinue potentially inappropriate high-risk medications.The literature was searched for robust evidence of the association of adverse effects related to potentially inappropriate medications in older patients to identify high-risk medications. Prior research into the cessation of potentially inappropriate medications in older patients in different settings was synthesized into a four-step algorithm for incorporation into clinical assessment protocols for patients, particularly those in residential aged care facilities.The algorithm comprises several steps leading to individualized prescribing recommendations: (i) identify a high-risk medication; (ii) ascertain the current indications for the medication and assess their validity; (iii) assess if the drug is providing ongoing symptomatic benefit; and (iv) consider withdrawing, altering or continuing medications. Decision support resources were developed to complement the algorithm in ensuring a systematic and patient-centered approach to medication discontinuation. These include a comprehensive list of high-risk medications and the reasons for inappropriateness, lists of alternative treatments, and suggested medication withdrawal protocols.The algorithm captures a range of different clinical scenarios in relation to potentially inappropriate medications, and offers an evidence-based approach to identifying and, if appropriate, discontinuing such medications. Studies are required to evaluate algorithm effects on prescribing decisions and patient outcomes. Geriatr Gerontol Int 2016; 16: 1002-1013.

This review discusses published studies of heavy rainfall events over the Mediterranean Basin, combining them in a more general picture of the dynamic and thermodynamic factors and processes that produce heavy rain storms. It distinguishes the western and eastern Mediterranean in order to point out specific regional peculiarities. The crucial moisture for developing intensive convection over these regions can be originated not only from the adjacent Mediterranean Sea but also from distant upwind sources. Transport from remote sources is usually in the mid-tropospheric layers and associated with specific features and patterns of the larger-scale circulations. The synoptic systems (tropical and extratropical) that account for most of the major extreme precipitation events and the coupling of circulation and extreme rainfall patterns are presented. Heavy rainfall over the Mediterranean Basin is caused at times in concert by several atmospheric processes working at different atmospheric scales, such as local convection, upper synoptic-scale-level troughs, and mesoscale convective systems. Under tropical air-mass intrusions, convection generated by static instability seems to play a more important role than synoptic-scale vertical motions. Locally, the occurrence of torrential rains and their intensity is dependent on factors such as temperature profiles and implied instability, atmospheric moisture, and lower-level convergence.

The energy status of the chicken at slaughter has a large impact on the development of pH postmortem and thus on color and water-holding capacity (WHC). Supplementation of creatine monohydrate and glucose (CMH+GLU) may increase the creatine content in the muscles before slaughter, thereby delaying the formation of lactic acid and postponing the pH decline. The objective of this study was to examine the impact of supplementing CMH+GLU in the drinking water within the last 48 h before slaughter on the pH decline, meat color, and WHC in the pectoralis major from 2 strains of Ross chickens. Forty Ross 308 (fast-growing) female chickens and 40 Ross 1972 (slow-growing) female chickens had free access to drinking water either supplemented with CMH (15 g/ L) and glucose (50 g/L) within the last 48 h before slaughter or without supplementation. All chickens were slaughtered at 42 or 43 d of age irrespective of weight. Temperature and pH were measured at 1 and 30 min and at 1, 3, 8, and 24 h postmortem. Also, WHC measured as drip loss and color were determined postmortem. The CMH+GLU supplementation decreased pH (P < 0.05) at all time points between 1 min and 8 h postmortem in both strains, whereas at 24 h postmortem only pH in Ross 308 chickens were decreased significantly upon supplementation. Lightness was significantly increased in the meat from Ross 308 but not from Ross 1972 chickens upon supplementation. This interaction was significant (P < 0.05). The redness of the meat was decreased upon supplementation (P < 0.05), although only significantly in Ross 1972. The pH was lower for Ross 1972 chickens at the early time points (P < 0.01) and also a higher drip loss (P < 0.05), lightness (P < 0.01), and redness (P < 0.001) were observed. Thus, there seems to be no beneficial effect of CMH+GLU supplementation on chicken meat quality on the basis of results from this experiment.

The objective of this study was to examine the effect of increased maternal nutrition in early to mid gestation on changes in serum growth factors of the sow and foetuses. Furthermore, the effect of the foetal sera on in vitro proliferation and differentiation of porcine primary myoblasts was examined. Pregnant sows were either given food either in accordance to requirements (2 kg/day; C) until day 50 or 70 of gestation or given food in accordance to requirements until day 25 and then ad libitum (A) until day 50 or 70. Sows were slaughtered at the Institute's veterinary controlled slaughterhouse at day 50 or 70, respectively. Serum from sows and pools of cord-blood serum from each litter were analysed for glucose, lactate, insulin, insulin-like growth factor (IGF; IGF-1 and -2) and IGF binding proteins (IGFBPs). IGF-1 (P < 0·001) was higher in A compared with C sows, and a 28-kDa IGFBP (P < 0·05) and a 24-kDa IGFBP (P < 0·05) was higher in serum from day 70 compared with day 50 sows. There was no significant effect of food intake on growth factor concentrations in foetal serum or on serum-induced proliferation and differentiation of myoblasts. A 28 kDa IGFBP, IGFBP-2 and -3 were all higher (P < 0·06) and serum-induced proliferation (P < 0·001) and differentiation (P < 0·1) lower at day 70 than day 50. Maternal food intake did not influence the DNA and RNA concentrations and the CPK activity in the foetal longissimus dorsi muscle. The glucose concentration in the liver was higher in C than A foetuses at day 70 of gestation, but not at day 50.In conclusion, no significant effects of maternal nutrition were found on serum growth factor concentrations in the foetuses or on serum-induced proliferation and differentiation of primary myoblasts.

In this chapter regional climate conditions are described in terms of the properties and behavior of the atmospheric circulation over and around the Mediterranean region (MR). The aim is to study the relationships between the atmospheric circulation and the surface environment and identify key dynamical interactions that are involved. In this sense the content of this chapter belongs to the general topic of synoptic climatology (see Huth et al. 2009 for a short discussion). Specifically this chapters describes the teleconnection patterns influencing the MR (section 1), the characteristics of the cyclones in the MR and their links to large-scale patterns (section 2), and the synoptic circulation conditions leading to temperature and precipitation extremes (section 3 and 4, respectively). Finally, local winds, wind extremes and some specific effects they induce (dust storms, storm surges, waves) are discussed.

Immediate efforts to increase soil carbonsequestration and minimize terrestrialgreenhouse gas emissions are needed tomitigate global warming. Whether or notterrestrial stocks become sinks or netsources of C over the next century willdepend upon how fast and at what level weare able to stabilize carbon dioxidelevels. The cost of soil C sequestrationis at present relatively low compared toother C emission reduction technologiesmaking soil C sinks an important short-termsolution to be used while competingtechnologies are developed. However,efforts to use C sequestration in soils asCO2 emissions offsets have facednumerous challenges. Difficultiesassociated with C stock validation (directmeasurement) and the impermanence andsaturability of soil C reservoirs raiseconcerns over whether soil C reservoirs aregood long-term investments. Pragmatism hasled to the development of indirectinventorying of the C reserves held atnational and regional scales. Suchindirect accounting systems will advance asvalidation methods are refined and asprocess models improve their ability toaccurately predict how existing soilcondition and specific land managementpractices will influence soil C storage andNO2 and CH4 emissions. Improveddocumentation of the value of environmentalservices and sustained productive potentialderived from optimized land use andassociated increases in soil quality willalso add to the estimated value of soil Csinks. Policies must evolve simultaneouslywith the theoretical and technical toolsneeded to promote optimization of land usepractices to mitigate climate change nowand to minimize future contributions ofsoil C to atmospheric CO2.

We completed a large insertional mutagenesis screen in zebrafish to identify genes essential for embryonic and early larval development. We isolated 525 mutants, representing lesions in approximately 390 different genes, and we cloned the majority of these. Here we describe 315 mutants and the corresponding genes. Our data suggest that there are roughly 1,400 embryonic-essential genes in the fish. Thus, we have mutations in approximately 25% of these genes and have cloned approximately 22% of them. Re-screens of our collection to identify mutants with specific developmental defects suggest that approximately 50 genes are essential for the development of some individual organs or cell types. Seventy-two percent of the embryonic-essential fish genes have homologues in yeast, 93% have homologues in invertebrates (fly or worm), and 99% have homologues in human. Yeast and worm orthologues of genes that are essential for early zebrafish development have a strong tendency to be essential for viability in yeast and for embryonic development in the worm. Thus, the trait of being a genetically essential gene is conserved in evolution. This mutant collection should be a valuable resource for diverse studies of cell and developmental biology.

A multi-year simulation with an atmospheric general-circulation model (AGCM), the Unified Model, is shown to simulate the main features of seasonal variations in the concentrations of water vapour in the stratosphere—the so-called tape-recorder signal. An off-line transport model, utilizing winds from the AGCM, is used to synthesize the signal from local contributions. During June–July–August, the most significant localized contribution to the moist phase of the signal comes from an air stream emanating from the South-East Asian monsoon. The moist air does not enter the stratosphere immediately above the monsoon in a localized ‘fountain’. Rather, the air stream moves southward, via the monsoon's upper level anticyclone, into the tropical stratosphere while moving steadily upwards across isentropic surfaces in a field of radiative heating in the tropical tropopause layer (TTL). As a result of this steady ascent during equatorward movement, not all the airstream is freeze dried in the cold cap of low temperatures which exists in the TTL above the monsoon. The water vapour mixing ratios of air entering the stratospheric tape-recorder are therefore not entirely set by the minimum temperatures near the equator, but in part by physical conditions outside the inner tropical region used to define the tape-recorder signal. During December–January–February, the flow near the tropopause is simpler. Dry air enters the stratosphere by slow upglide through the localized temperature minimum near the tropical tropopause over the western Pacific. The mixing ratios during the dry phase are set largely by freeze drying in this region. The simple tape-recorder model, which envisages that mixing ratios are set by the minimum temperature near the tropical tropopause is therefore an oversimplification. Copyright © 2004 Royal Meteorological Society

The objective of this study was to examine the intralitter variation in postnatal growth performance, meat quality, and muscle fiber characteristics when littermates were categorized by carcass weight. Thirty-nine litters were weaned at 4 wk of age and had free access to feed from 2 wk of age until slaughter. They were slaughtered by litter at an average BW of 104 +/- 14 kg, and six pigs per litter were selected for analysis: the heaviest- (HW), middle- (MW), and lightest-weight (LW) pig of each sex. Categorizing littermates in LW, MW, and HW pigs at the same age reflected the differences in postnatal growth rate within a litter; thus ADG, muscle mass, and muscle deposition rate differed across pig weight groups (P < 0.001). Also, the total DNA content was different among pig weight groups (P < 0.001) and reflected differences in muscle growth rate. The difference in muscle growth rate between LW and MW pigs could be explained by a larger (P < 0.05) mean fiber area (MFA) in MW pigs, whereas the number of muscle fibers was similar. Growth rate differences between MW and HW pigs could in part be explained by a higher number (P < 0.01) of equal-sized muscle fibers in HW pigs. The difference in MFA was due to a higher estimated DNA and RNA content per muscle fiber in MW and HW compared with LW pigs (P < 0.05). Pigment content was higher in MW and HW compared with LW pigs (P < 0.01), but no other measured meat quality traits were significantly different across pig weight groups. These results indicate that both the number and the growth rate of muscle fibers contribute to intralitter variation in postnatal growth performance.

The objective of this study was to examine how increased feed intake of the sow during early to mid-gestation affects sow performance and the muscle fiber number, performance, and technological meat quality of the offspring. Thirty-nine pregnant sows (Landrace x Large White sows mated to Landrace or Large White boars) in their fourth parity were assigned to one of three treatments: 1) the sows were either fed restrictively (control = 15 MJ of NE/d from d 1 to 90, then 24 MJ of NE/d from d 91 to 112, and again 15 MJ of NE/d from d 113 to 115 of gestation); 2) fed ad libitum from d 25 to 50 (A25-50); or 3) ad libitum from d 25 to 70 (A25-70) and as control in the remaining periods. The offspring were weaned at 4 wk of age and had free access to feed from 2 wk of age until slaughter. They were slaughtered litterwise at an average body weight of 104 +/- 14 kg. Estimates for total, primary (P-), and secondary (S-) muscle fiber number; muscle fiber area; and DNA and RNA content were analyzed in semitendinosus muscle (ST) samples from the heaviest, middle, and lightest weight (LW) pigs of each sex within litter selected at slaughter. Technological meat quality traits (pH at 24 h postmortem, drip loss, Minolta color, and pigment) were analyzed in longissimus dorsi muscle. Fiber number, fiber area, and concentrations and content of DNA and RNA of the offspring were not significantly affected by increased maternal nutrition. The ST muscle weight was lower in offspring from A25-50 than control sows (P = 0.019). Average daily gain, carcass weight, and the muscle deposition rate also were numerically lower for A25-50 than control and A25-70 pigs. An interaction between treatment and pig weight was found for muscle deposition rate (P = 0.006), in that LW pigs from treatment A25-50 had a lower deposition rate than LW pigs from control. We found no effect of treatment on the meat quality traits in the offspring. Also, barrows had a higher (P < 0.05) number of P-fibers, higher daily gain, and carcass weight than female pigs. No differences were found on any meat quality traits between sexes. Thus, ad libitum feeding of pregnant sows from d 25 to 50 or d 25 to 70 of gestation did not have any beneficial effect on muscle fiber number and area in the offspring. It seems that maternal ad libitum feeding from d 25 to 50 in gestation had a negative effect on postnatal muscle growth, with especially the LW pigs being affected.

We tested the hypothesis that particulate organic matter (POM) and aggregate dry mean weight diameter (DMWD) are related to fertilizer-use efficiency (FUE) and leaching susceptibility. Soil cores (15 cm diam. by 50 cm depth) were collected from 12 farm fields representing three cropping systems: conventional (CT) and no-tillage (NT) management of corn (Zea mays L.)-soybean [Glycine max (L.) Merr.] rotations, and CT applied to more diversified corn-soybeanbased rotations (R-CT). Three of the four R-CT farms were organically managed. In a 95-d greenhouse trial, cores were seeded with corn, amended with 15 N-labeled urea applied at four rates (0, 75, 150, 225 kg N ha -1 ), and subjected to a stressful moisture regime. Aggregate DMWD, which serves as a rough index of pore-size distribution, was greater in NT cores. Although total leached N was similar in all cropping systems, increased macropore flow in NT cores led to greater leaching of fertilizer N and less leaching of soil-derived N, as well as greater moisture stress and decreased plant N uptake. The R-CT cores had more POM and organic C in the top 30 cm of soil and higher crop biomass and biomass-N content. However, FUE in R-CT cores was relatively low since FUE does not account for contributions of indigenous N. For the same reason, FUE remained relatively high in CT systems despite less labile organic matter. Both FUE and SOM conservation declined with increasing N application rates. Increasing labile sources of N, reflected in POM pools, through crop diversification can substitute for incremental increases in fertilizer N and improve long-term productivity on Illinois Mollisols.

A voluntary waterfowl avoidance area (VWAA) was established on Lake Onalaska in Navigation Pool 7 of the Upper Mississippi River, Wisconsin, USA, in 1986, to reduce boating disturbance to migratory waterfowl. We monitored boater compliance with the VWAA program in 1993 and 1997. Of 1,664 “boating events” observed on Lake Onalaska, boats intruded into the VWAA on 127 occasions. Boating events have increased from 1.82 boating events/h in 1986-88 to 1.97 in 1993 and 2.58 in 1997. Despite a 60% increase in boating traffic, the lake-wide disturbance rates in 1997 were comparable to that in 1981. We attribute this to a significant reduction in the proportion of lake-wide boating events that resulted in disturbance, a direct consequence of the VWAA program. Rate of intrusion into the VWAA was 0.11 per boating event in 1997 compared to 0.18 per boating event in 1986-88. Boating disturbances to waterfowl within the VWAA occurred at about half the rate (0.24 to 0.28 disturbances·hr-1) observed prior to est...

To rapidly identify genes required for early vertebrate development, we are carrying out a large-scale, insertional mutagenesis screen in zebrafish, using mouse retroviral vectors as the mutagen. We will obtain mutations in 450 to 500 different genes--roughly 20% of the genes that can be mutated to produce a visible embryonic phenotype in this species--and will clone the majority of the mutated alleles. So far, we have isolated more than 500 insertional mutants. Here we describe the first 75 insertional mutants for which the disrupted genes have been identified. In agreement with chemical mutagenesis screens, approximately one-third of the mutants have developmental defects that affect primarily one or a small number of organs, body shape or swimming behavior; the rest of the mutants show more widespread or pleiotropic abnormalities. Many of the genes we identified have not been previously assigned a biological role in vivo. Roughly 20% of the mutants result from lesions in genes for which the biochemical and cellular function of the proteins they encode cannot be deduced with confidence, if at all, from their predicted amino-acid sequences. All of the genes have either orthologs or clearly related genes in human. These results provide an unbiased view of the genetic construction kit for a vertebrate embryo, reveal the diversity of genes required for vertebrate development and suggest that hundreds of genes of unknown biochemical function essential for vertebrate development have yet to be identified.

To derive optimal benefits from intercropping timber, farmers should make important initial decisions on tree species and planting density with a good understanding of their tradeoffs. Complex and data-intensive models used by researchers should be supplemented with simpler models based on easily measured parameters and easily understood competition functions. In experiments in the Philippine uplands, growth parameters of three popular farm-forestry species (Eucalyptus deglupta, E. torelliana, and Paraserianthes falcataria) were measured, along with intercropped and non-intercropped yields of maize and vegetables. The commonly used forestry parameter of stand basal area had a significant negative correlation with intercrop yields (as a percentage of non-intercropped yields). The slope of the regression line differed between species; in this study, percent yield loss per unit stem basal area growth was in the order E. deglupta > E. torelliana > P. falcataria. The relationship between stand basal area and intercrop-yield decline was tested on an independent data set from China. Intercrop yields had significant negative correlations with stand basal area of Paulownia elongata. We propose that adaptive tree-screening trials evaluate competitiveness in addition to evaluating growth and mortality. Stand basal area may be better suited to this task than more mechanistic indices such as leaf-area index as it is easy to measure, calculate, and understand, and it may serve as a better index of total (aboveground + belowground) competition. Basal area is also directly related to tree volume, and allows farmers to more easily evaluate the economic tradeoffs between tree growth and intercrop-yield declines.

SummaryFlood generation is triggered by the interaction of the hydrological pre-conditions and the meteorological conditions at different space–time scales. This interaction results in floods of diverse characteristics, e.g. spatial flood extent and temporal flood progression. While previous studies have either linked flood occurrence to weather patterns neglecting the hydrological pre-conditions or categorised floods according to their generating mechanisms into flood types, this study combines both approaches. Exemplary for the Elbe River basin, the influence of pre-event soil moisture as an indicator of hydrological pre-conditions, on the link between weather patterns and flood occurrence is investigated. Flood favouring soil moisture and weather patterns as well as their combined influence on flood occurrence are examined. Flood types are identified and linked to soil moisture and weather patterns. The results show that the flood favouring hydro-meteorological patterns vary between seasons and can be linked to flood types. The highest flood potential for long-rain floods is associated with a weather pattern that is often identified in the presence of so called ‘Vb’ cyclones. Rain-on-snow and snowmelt floods are associated with westerly and north-westerly wind directions. In the analysis period, 18% of weather patterns only caused flooding in case of preceding soil saturation. The presented concept is part of a paradigm shift from pure flood frequency analysis to a frequency analysis that bases itself on process understanding by describing flood occurrence and characteristics in dependence of hydro-meteorological patterns.

Wet oxidation (WO) is a well established process for purification of concentrated municipal and industrial wastewaters. Many attempts have been made to modify the WO process or to create a suitable combination of processes. This work was undertaken to investigate wet oxidation integrated with coagulation, i.e. to treat the sludge remaining after coagulation with a WO process. The possibility of regeneration of the used coagulant was also considered. Two waters from paper mills were used: TMP (thermomechanical pulp) circulation water and membrane concentrate. About 50% of the COD in the original water can be removed by coagulation using Fe2(SO4)3. The results from the wet oxidation experiments show the positive effect of iron in the chemical sludge as a catalyst. The efficiency of the WO process was enhanced almost by 100%. The remaining dissolved organic matter can be easily removed biologically.

To stimulate transcriptional elongation of HIV-1 genes, the transactivator Tat recruits the positive transcription elongation factor b (P-TEFb) to the initiating RNA polymerase II (RNAPII). We found that the activation of transcription by RelA also depends on P-TEFb. Similar to Tat, RelA activated transcription when tethered to RNA. Moreover, TNF-alpha triggered the recruitment of P-TEFb to the NF-kappaB-regulated IL-8 gene. While the formation of the transcription preinitiation complex (PIC) remained unaffected, DRB, an inhibitor of P-TEFb, prevented RNAPII from elongating on the IL-8 gene. Remarkably, DRB inhibition sensitized cells to TNF-alpha-induced apoptosis. Thus, NF-kappaB requires P-TEFb to stimulate the elongation of transcription and P-TEFb plays an unexpected role in regulating apoptosis.

Aims/hypothesis. ART2.2 is a mouse T-cell surface ectoenzyme [mono (ADP-ribosyl) transferase] shed upon strong activation. We analysed temporal changes in ART2.2 expression in unmanipulated and cyclophosphamide-treated NOD/Lt mice compared with diabetes-resistant control strains. We used NAD, the ART2.2 substrate, to test whether ART-mediated ADP-ribosylation could retard diabetogenic activation of islet-reactive T cells in vitro. Methods. ART2.2 and CD38, another NAD-utilizing enzyme, were measured by flow cytometry. ADP-ribosylation from ethano-NAD was followed by flow cytometry using a reagent specific for etheno-ADP ribose. Results. Although mature NOD CD4 + and C D8 + T cells expressed ART2.2, this expression was delayed in young NOD mice when compared with control strains. This ontological delay at 3 weeks of age correlated with an early burst of CD25 expression unique to NOD splenic T cells. This pattern was reproduced in cyclophosphamide-accelerated diabetes in young NOD/Lt males, wherein a retarded repopulation of ART2.2 T cells in spleen and islets correlated with development of heavy insulitis and diabetes. NAD inhibited anti-CD3 induced activation of splenic T cells in vitro and also retarded killing of beta-cell targets by NOD islet-reactive CD8 effectors in vitro at concentrations equal to or greater than 1 μmol/l. Evidence suggested that CD38 on B lymphocytes competes with ART2.2 for substrate needed by B lymphocytes for ADP ribosylation. Conclusions. ART2.2 on T cells may not simply mark the resting state, but could also contribute to it via ADP-ribosylation. [Diabetologia (2001) 44: 848–858]

Birth defects are among the leading causes of infant mortality and contribute substantially to illness and long-term disability. Defects in Bone Morphogenetic Protein (BMP) signaling are associated with cleft lip/palate. Many craniofacial syndromes are caused by defects in signaling pathways that pattern the cranial neural crest cells (CNCCs) along the dorsal-ventral axis. For example, auriculocondylar syndrome is caused by impaired Endothelin-1 (Edn1) signaling, and Alagille syndrome is caused by defects in Jagged-Notch signaling. The BMP, Edn1, and Jag1b pathways intersect because BMP signaling is required for ventral edn1 expression that, in turn, restricts jag1b to dorsal CNCC territory. In zebrafish, the scaffolding protein Wdr68 is required for edn1 expression and subsequent formation of the ventral Meckel's cartilage as well as the dorsal Palatoquadrate. Here we report that wdr68 activity is required between the 17-somites and prim-5 stages, that edn1 functions downstream of wdr68, and that wdr68 activity restricts jag1b, hey1, and grem2 expression from ventral CNCC territory. Expression of dlx1a and dlx2a was also severely reduced in anterior dorsal and ventral 1st arch CNCC territory in wdr68 mutants. We also found that the BMP agonist isoliquiritigenin (ISL) can partially rescue lower jaw formation and edn1 expression in wdr68 mutants. However, we found no significant defects in BMP reporter induction or pSmad1/5 accumulation in wdr68 mutant cells or zebrafish. The Transforming Growth Factor Beta (TGF-β) signaling pathway is also known to be important for craniofacial development and can interfere with BMP signaling. Here we further report that TGF-β interference with BMP signaling was greater in wdr68 mutant cells relative to control cells. To determine whether interference might also act in vivo, we treated wdr68 mutant zebrafish embryos with the TGF-β signaling inhibitor SB431542 and found partial rescue of edn1 expression and craniofacial development. While ISL treatment failed, SB431542 partially rescued dlx2a expression in wdr68 mutants. Together these findings reveal an indirect role for Wdr68 in the BMP-Edn1-Jag1b signaling hierarchy and dorso-anterior expression of dlx1a/2a.

STUDY QUESTION: Do children born to fathers of advanced age have an increased risk of dying before the age of 5 years?SUMMARY ANSWER: Children born to fathers aged 40 years or more have an increased risk of dying in early childhood due to an excess risk of fatal congenital anomalies, malignancies and external causes.WHAT IS KNOWN ALREADY: Advanced paternal age has previously been associated with adverse reproductive outcomes and some long-term health problems in the offspring. This is possibly due to specific point mutations, a condition known to increase in the sperm with increasing paternal age.STUDY DESIGN, SIZE, DURATION: A Danish population-based register study, designed as a prospective cohort study, of 1 575 521 live born children born from 1978 to 2004. The age of the child (in days) was used as the underlying time and the children entered the cohort the day they were born and were followed until 31 December 2009. The children were censored on date of turning 5 years, date of death or date of emigration, whichever occurred first.PARTICIPANTS/MATERIALS, SETTING, METHODS: Data from population-covering registers from Statistics Denmark including the Integrated Database for Labour Market Research, the Medical Birth Registry and the Registry of Causes of Death was linked using the unique civil registry number. Hazard ratios (HR) with 95% confidence intervals (CI) were used to estimate the risk of under-five mortality. The effect of paternal age was examined using restricted cubic splines and paternal age groups.MAIN RESULTS AND THE ROLE OF CHANCE: Compared with children born to fathers aged 30-34 years, a statistically significant excess risk was found for children born to fathers aged 40-44 years [HR: 1.10 (95% CI: 1.00-1.21)] and children born to fathers aged 45+ years [HR: 1.16 (95% CI: 1.02-1.32)]. When only looking at 1-5 year olds, the relative risk (HR) among children born to fathers aged 40-44 years increased to 1.24 (95% CI: 1.00-1.53) and the risk in the oldest paternal age group (45+ years) rose to 1.65 (95% CI: 1.24-2.18). The results suggest that the elevated risk for children of fathers aged 40 years or more was primarily attributed to an elevated risk of dying from congenital malformations, malignancies and external causes.LIMITATIONS, REASONS FOR CAUTION: Specific causes of death might be misclassified; however, this is not likely to be dependent on paternal age. In some cases, the biological father may differ from the father registered. This misclassification is most likely non-differential.WIDER IMPLICATIONS OF THE FINDINGS: The excess risk of mortality among children born to older fathers is in accordance with the literature. The association needs further attention as it can provide valuable knowledge of the etiology of genetic diseases. Also, the association could become of greater importance in the future if the proportion of fathers aged 40+ years keeps growing.STUDY FUNDING/COMPETING INTEREST (S): None.

The sensitivity of tropical waves in a general circulation model (GCM) to radiation, vertical resolution, and deep convection is investigated. The implications of this for the simulation of the quasi-biennial oscillation (QBO) and the stratopause seminannual oscillation (SAO) are examined. Varying the vertical resolution produced the greatest impact. Increasing the resolution leads to a more realistic Kelvin wave dissipation, and the westerly phase of a QBO starts to develop but is ended early by the advection of unrealistically strong easterly winds from the southern summer hemisphere. The dissipation of Kelvin waves at lower altitudes leads to a weakening of the westerly phase of the SAO. Only small, not statisically significant differences have been found between the integrations using the Kuo and the Betts-Miller convection schemes. There is slightly more westerly momentum in the integration with the Kuo parameterization. The mass flux convection scheme of Tiedtke is unsuitable for use in the Berlin Troposphere-Stratosphere-Mesosphere GCM. It simulates unrealistic latent heat distributions and favors instabilities which generate artifical Kelvin waves. The radiation scheme has little impact on the dissipation of the tropical waves, but replacing the Newtonian cooling approach allows more physically consistent integrations.

An expanding market for planted timber in the Philippines is providing a strong incentive for upland farmers to incorporate trees into their farming systems. Farmers often intercrop young timber species with well-fertilized annuals in expectation that inter- species competition for nutrients and light will be minimal while the trees are small, and that the trees will benefit from intensive nutrient and weed management of the intercrop. The relative level of aboveground and belowground competition in a vegetable/timber intercropping system was investigated in the uplands of Mindanao, the Philippines. Eight 5-m2 microplots were established containing one nine-month-old Eucalyptus torelliana and four rows of cabbage (two on each of the north and south sides of the tree, 0.5 and 1.0 m from the stem base). The tree canopy shaded north rows. Monocrop cabbage microplots (2 m2) were also installed. Four tree/cabbage microplots and all cabbage-only plots were fertilized with 15 5N-labeled ammonium sulfate (100 kg N ha−1); remaining microplots received unlabeled fertilizer. Cabbage yields were reduced by 16% in the north rows when compared to the south rows, and by 15% in rows closer to the tree when compared to rows further from the trees. Belowground competition in the first cabbage row, possibly for moisture, is supported by the high proportion of tree roots found in the top 30 cm of soil. Competition did not appear to be for N or other nutrients. Foliar analyses revealed no row differences in mineral concentrations in cabbage, uptake of applied N, or percent of N derived from fertilizer. The modest amount of 15N found in aboveground tree parts (4.5% of N applied to four cabbage rows) improved overall N-use efficiency in the intercropped plots. An improved understanding of the tradeoffs between improved nutrient efficiency and depressed intercrop growth, as well as management options to reduce competition, will help farmers design systems to improve efficiency without increasing competition.

On highly-weathered Ultisols of the Georgia (USA) Piedmont, a combination of no-till agriculture and alley cropping presents an option for rapidly increasing soil nitrogen availability while restoring long-term soil fertility. Three years after the establishment of Albizia julibrissin hedgerows and no-till agriculture trials, we measured inorganic soil nitrogen (NO3 -–N and NH4 -–N) and net nitrogen mineralization during a 4-month field study and a 14-day laboratory study . We also measured the influence of tree leaf amendments on grain sorghum production and N uptake. Soil nitrate increased four-fold within two weeks of adding Albizia leaf mulch. Soil ammonium did not increase as rapidly nor to the same extent after tree mulch addition. Averaged over the 4-month study, soil nitrate and ammonium were 2.8 and 1.4 times higher in the alley-cropped than in the treeless no-till plots. Net nitrification and mineralization were no higher in the alley cropping plots, during either field or laboratory incubations. Tree mulch additions enhanced crop biomass production and N uptake 2 to 3.5 times under both high and low soil moisture conditions. Our study demonstrates the dramatic short-term impacts of Albizia mulch addition on plant available nitrogen. Combined with no-till practices, alley cropping with Albizia hedges offers Piedmont farmers an option for reducing reliance upon chemical N fertilizer while improving soil organic matter levels.

Intrauterine growth restriction (IUGR) occurs naturally in pigs and leads to low birth weight of piglets due to undernutrition caused by placental insufficiency. For 2 main reasons, low birth weight causes economic loss. First, low birth weight pigs have a greater mortality and increasing the litter size causes more low birth weight piglets within litters. Second, surviving low birth weight piglets have reduced performance (i.e., ADG, feed conversion rate, and percentage meat). To develop dietary strategies for preventing IUGR, knowledge of the biological basis of IUGR is required. Muscle fiber number, formed during myogenesis, is correlated positively with performance traits and has been shown in several studies to be reduced in low birth weight pigs. Postnatal muscle hypertrophy is due to satellite cell number per fiber at birth and their rate of proliferation as well as protein deposition (i.e., protein synthesis and degradation). Previous studies and some recent ones indicate that low birth weight littermates in mice are born with fewer satellite cells and studies on pigs show that the rate of satellite cell proliferation may vary within litters. Proteomics studies show that protein synthesis and degradation is downregulated in IUGR pigs and low birth weight pigs also produce meat with less tenderness. Alternative maternal feeding strategies to prevent IUGR have been examined. Increasing maternal global nutrition had no beneficial effect on performance and muscle growth traits in several studies. Feeding excess maternal dietary protein also did not influence muscle growth traits whereas moderately decreased maternal dietary protein may decrease muscle fiber number and performance. On the other hand, addition of L-carnitine to the maternal gestation or lactation diet may increase birth and weaning weights or the muscle fiber number, respectively, in low birth weight pig offspring. Finally, promising data have been obtained on reproductive traits in pigs after addition of functional AA, such as arginine and glutamine, to the gestational diet. Although much is known about the biological basis of IUGR, we still need to learn much more about the mode of action before maternal dietary strategies can be developed to prevent IUGR.

Mediterranean climate change during the last 60 years is based on homogenized daily temperature and quality controlled precipitation observational data and gridded products. The estimated changes indicate statistically significant Mediterranean summer temperature increase and a reduction in winter precipitation in specific areas. Reconstructions of Mediterranean sea level suggest a rise of some 150 mm since the beginning of the nineteenth century. A 20 years long reanalysis (1985–2007) was produced, showing long term temperature variability and a positive salinity trend in the ocean layers from the surface to 1,500 m depth. A prominent increase in summer temperature extremes is found in the whole Mediterranean region, while warm bias in the mid twentieth century station data is removed by homogenization. No basin-wide trends in precipitation and droughts are found for the second half of the twentieth century, while trends in extreme winds are largely negative, as are those of the related cyclones and cut-off-lows. The role of large scale pressure patterns like the NAO for variabilities and trends is discussed for the different parameters considered.

Improving non-cognitive outcomes such as attitudes, efficacy, and persistence in physics courses is an important goal of physics education. This investigation implemented an in-the-moment surveying technique called the Experience Sampling Method (ESM) [1] to measure students' affective experience in physics. Measurements included: self-efficacy, cognitive efficiency, activation, intrinsic motivation, and affect. Data are presented that show contrasts in students' experiences (e.g., in physics vs. non-physics courses).

In this chapter we show results from an innovative multi-model system used to produce climate simulations with a realistic representation of the Mediterranean Sea. The models (hereafter simply referred to as the “CIRCE models”) are a set of five coupled climate models composed by a high-resolution Mediterranean Sea coupled with a relatively high-resolution atmospheric component and a global ocean, which allow, for the first time, to explore and assess the role of the Mediterranean Sea and its complex, small-scale dynamics in the climate of the region. In particular, they make it possible to investigate the influence that local air-sea feedbacks might exert on the mechanisms responsible for climate variability and change in the European continent, Middle East and Northern Africa. In many regards, they represent a new and innovative approach to the problem of regionalization of climate projections in the Mediterranean region.

Postnatal muscle growth is dependent on satellite cell (SC) proliferation, differentiation and fusion to increase the DNA content of existing muscle fibres and thereby the capacity to synthesize protein. The purpose of the present study was to examine the ability of isolated SCs from low, medium and high weaning weight litter mates of pigs to proliferate and differentiate, and to affect protein synthesis and degradation after fusion into myotubes. At 6 weeks of age, SCs from the lowest weight (LW), medium weight (MW) and highest weight (HW) female pigs within eight litters were isolated. Thereby, eight cultures of SCs were established for each of the three weight groups within litter, representing three groups of SCs from pigs exhibiting differences in postnatal muscle growth performance. Proliferation was estimated as the number of viable cells at different time points after seeding. SC differentiation was evaluated by measuring the activity of the muscle-specific enzyme, creatine phosphokinase, and protein synthesis and degradation were measured by incorporation and release of 3H-tyrosine, respectively. A tendency towards a difference in proliferation between SC cultures was found (P = 0.09). This was evident as the number of viable cells at day 3 was lower in cultures from LW pigs than from HW (P < 0.05) and MW (P < 0.01) pigs. Differentiation was significantly different between cultures (P < 0.05). There was a significant difference between LW and MW cultures at 72 h (P < 0.05), and a tendency towards a difference between LW and HW cultures at 45 h (P = 0.07). Protein synthesis per μg protein or per μg DNA did not differ among SC cultures from LW, MW and HW pigs. Neither did protein degradation rate differ significantly among SC cultures from LW, MW and HW pigs. Overall, the results show that SCs from LW pigs seem to proliferate and differentiate at a slower rate than SCs from MW and HW pigs. The results found in this study show no difference in the ability of SCs to affect protein synthesis or degradation between SCs from litter mates exhibiting different growth rates in vivo.

This paper discusses present characteristics and trends of severe marine storminess in the Northern Adriatic. It merges oceanographic and meteorological aspects by considering storm surges, wind waves and the atmospheric cyclones that cause them. The paper introduces these three processes and the different role of south-easterly (Sirocco) and easterly (Bora) wind regimes. The specific characteristics of cyclones producing severe marine storms in terms of location where cyclogenesis occurs, trajectories and intensity, are compared with those of generic cyclones crossing northern Italy. It is shown that cyclones producing high waves and surges in most cases have different characteristics and their lists overlap only partially. However, both high wave and surge events have a similar annual cycle, with maximum activity in November and hardly any event in summer (June–July–August). The trends of severe high wave and surge events are discussed (various thresholds are considered) and they are shown to be broadly consistent. Timeseries, which show large inter-annual variability and very little overall tendencies on multi-decadal time scale, suggest progressively milder storms during the second half of the 20th century.

This chapter considers a set of issues related to the synoptic climatology of the Mediterranean region (MR). The main Northern Hemisphere teleconnections affecting the MR and their role on temperature, precipitation, and atmospheric cyclones are described. The characteristics of the cyclones in the MR are presented. The role of teleconnections and atmospheric regimes on temperature and precipitation is discussed. The content includes extremes of temperature, precipitation, wind, and storminess (considering also marine aspects such as waves and storm surges).

Because of its similarity to the simplified boiling water reactor (SBWR), the Dodewaard natural circulation boiling water reactor (BWR) is of special interest to further development of the SBWR design. It has become especially important to gain more insight into the Dodewaard BWR behavior during startup, paying special attention to its stability. Therefore, special instrumentation was used by means of which a series of measurements were taken during the two startups in February and June 1992. The results obtained from these measurements are used to deepen insight into the recirculation flow and the stability of the reactor during startup under conditions with a normal pressure/power trajectory

Current induced wire explosions have been studied for many years for applications in exploding bridge wires and as radiation sources. Typical media are air, water and vacuum. In this effort, experiments are conducted in ambient air for the purpose of validating numerical simulations performed with the magneto-hydrodynamics (MHD) code ALEGRA. In addition to the electrical quantities current, voltage, and the action integral, derivative parameters, such as pressure and shock wave velocity, are also measured and compared.

Nan Zhang, The George Washington University, nzhang10@gwu.edu Yong Guan, Iowa State University, yguan@iastate.edu Michael M Losavio, University of Louisville, michael.losavio@louisville.edu Peter Vasquez, VTX Communications, pvasquez@vtxc.net Robert M. Nissen, National Computer Security Center, r.nissen@radium.ncsc.mil Edward Talbot, Sandia National Laboratory, edtalbo@sandia.gov Vassil Roussev, University of New Orleans, vassil@cs.uno.edu

Epidemiological studies in man and with experimental animal models have shown that intrauterine growth restriction (IUGR) resulting in low birth weight is associated with higher risk of programming welfare diseases in later life. In the pig, severe IUGR occurs naturally and contribute substantially to a large intralitter variation in birth weight and may therefore be a good model for man. In the present paper the natural form of IUGR in pigs was studied close to term by nuclear magnetic resonance (NMR-)based metabolomics. The NMR-based investigations revealed different metabolic profiles of plasma samples from low-birth weight (LW) and high-birth weight (HW) piglets, respectively, and differences were assigned to levels of glucose and myo-inositol. Further studies by GC-MS revealed that LW piglets had a significant higher concentration of myoinositol and D-chiro-inositol in plasma compared to larger littermates. Myo-inositol and D-chiro-inositol have been coupled with glucose intolerance and insulin resistance in adults, and the present paper therefore suggests that IUGR is related to impaired glucose metabolism during fetal development, which may cause type 2 diabetes in adulthood.

von Recklinghausen's neurofibromatosis (NF1) is a common inherited human disease. The events leading to patient symptoms from inheritance of a defective NF1 gene are unknown. Since knowledge of the distribution of the normal NF1 gene product should improve understanding of the pathogenesis of the disease, we raised antibodies against peptides coded by portions of the recently cloned human NF1 cDNA. These antibodies specifically recognize a 220 kd protein (neurofibromin) in both human and rat spinal cord. Neurofibromin is most abundant in the nervous system. Immunostaining of tissue sections indicates that neurons, oligodendrocytes, and nonmyelinating Schwann cells contain neurofibromin while astrocytes and myelinating Schwann cells do not. These results suggest a function for neurofibromin in the normal nervous system. Some NF1 disease manifestations, such as Schwann cell tumors and learning disabilities, may result from abnormalities in the cells that express neurofibromin.

Nodal-signaling is required for specification of mesoderm, endoderm, establishing left–right asymmetry, and craniofacial development. Wdr68 is a WD40-repeat domain-containing protein recently shown to be required for endothelin-1 (edn1) expression and subsequent lower jaw development. Previous reports detected the Wdr68 protein in multiprotein complexes containing mammalian members of the dual-specificity tyrosine-regulated kinase (dyrk) family. Here we describe the characterization of the zebrafish dyrk1b homolog. We report the detection of a physical interaction between Dyrk1b and Wdr68. We also found perturbations of nodal signaling in dyrk1b antisense morpholino knockdown (dyrk1b-MO) animals. Specifically, we found reduced expression of lft1 and lft2 (lft1/2) during gastrulation and a near complete loss of the later asymmetric lft1/2 expression domains. Although wdr68-MO animals did not display lft1/2 expression defects during gastrulation, they displayed a near complete loss of the later asymmetric lft1/2 expression domains. While expression of ndr1 was not substantially effected during gastrulation, ndr2 expression was moderately reduced in dyrk1b-MO animals. Analysis of additional downstream components of the nodal signaling pathway in dyrk1b-MO animals revealed modestly expanded expression of the dorsal axial mesoderm marker gsc while the pan-mesodermal marker bik was largely unaffected. The endodermal markers cas and sox17 were also moderately reduced in dyrk1b-MO animals. Notably, and similar to defects previously reported for wdr68 mutant animals, we also found reduced expression of the pharyngeal pouch marker edn1 in dyrk1b-MO animals. Taken together, these data reveal a role for dyrk1b in endoderm formation and craniofacial patterning in the zebrafish. genesis 48:20–30, 2010. © 2009 Wiley-Liss, Inc.

The objectives of the present study were to examine the impact of growth rate on meat quality within litters of pigs. Sixteen litters were used in this study. Pigs within the same litter were slaughtered over a period of up to three weeks corresponding to four delivery days according to a similar body weight. The aim was to slaughter pigs at the same weight but varying in age at slaughter and growth rate. After slaughter, meat percentage, pH45min, pH24h, drip, thawing and cooking loss, colour and shear force in M. Longissimus dorsi (LD) were measured. The activity of the proteolytic enzymes µM and mM-calpain was also measured in LD. Growth rate differed significantly among delivery days. No significant differences were found in meat quality traits among delivery days except for higher redness in late delivery pigs. In conclusion, from our data growth rate cannot be used to predict meat quality.

Pigs are a litter bearing species that give birth to an average between 9 and 13 pigs per litter depending on breed and country. The gestation length is 113–115 days. Early gestation ends at around day 40, and mid gestation at about day 80. In conventional, indoor pig production the lactation period is 3–4 weeks, thus pigs are weaned at around days 21–28 at a mean live body weight of between 6 and 8 kg. In most countries, pigs are slaughtered when they reach a live body weight between 90 and 120 kg, although production of heavier pigs is common in some counties.

Transcription factors play a key role in integrating and modulating biological information. In this study, we comprehensively measured the changing abundances of mRNAs over a time course of activation of human peripheral-blood-derived mononuclear cells (“macrophages”) with lipopolysaccharide. Global and dynamic analysis of transcription factors in response to a physiological stimulus has yet to be achieved in a human system, and our efforts significantly advanced this goal. We used multiple global high-throughput technologies for measuring mRNA levels, including massively parallel signature sequencing and GeneChip microarrays. We identified 92 of 1,288 known human transcription factors as having significantly measurable changes during our 24-h time course. At least 42 of these changes were previously unidentified in this system. Our data demonstrate that some transcription factors operate in a functional range below 10 transcripts per cell, whereas others operate in a range three orders of magnitude greater. The highly reproducible response of many mRNAs indicates feedback control. A broad range of activation kinetics was observed; thus, combinatorial regulation by small subsets of transcription factors would permit almost any timing input to cis -regulatory elements controlling gene transcription.