223 results on '"Lingyan Shi"'
Search Results
102. Contributors
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Robert R. Alfano, Mirella L. Altoé, Suresh Anand, Afrouz Anderson, Siamak Aram, Dmitry N. Artemyev, Danielle R. Bajakian, Renzhe Bi, Ivan A. Bratchenko, Charles H. Camp, Rui Cao, Jun Chen, Ji-Xin Cheng, Fatima Chowdhry, Riccardo Cicchi, Marcus T. Cicerone, Emma Condy, Travis J.A. Craddock, Hadis Dashtestani, Kishan Dholakia, Jing Dong, F.J. Duarte, Sergio Fantini, Amir Gandjbakhche, Stuart R. Hameroff, Dawn L. Hershman, Andreas H. Hielscher, Song Hu, Nicusor V. Iftimia, Jana M. Kainerstorfer, Kevin Kalinsky, Nader Shahni Karamzadeh, Riley Kermanian, Hyun K. Kim, Sergey V. Kozlov, Philip Kurian, Hyeon Jeong Lee, Martin Lee, Jun Li, Cheng-hui Liu, Qinglei Ma, Alessandro Marone, Helga Miguel, Haiding Mo, Alexander A. Moryatov, Oleg O. Myakinin, Jonathan Nylk, Malini Olivo, Andrey E. Orlov, Prabodh Kumar Pandey, Francesco S. Pavone, Asima Pradhan, Yang Pu, Alexander Ruesch, Lingyan Shi, Pankaj Singh, Laura A. Sordillo, Peter P. Sordillo, Gary Tearney, William J. Tipping, Jack A. Tuszynski, Wubao Wang, Binlin Wu, Min Xu, Ryohei Yasuda, Xinguang Yu, Valery P. Zakharov, Rachel Zaragoza, Youbo Zhao, Yan Zhou, Ke Zhu, and Zhiyi Zuo
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- 2019
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103. Majorana-like Photons from Cylindrical Vector Beams Propagating through Brain tissue
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Lingyan Shi, Daniel A. Nolan, Sandra Mamani, and Robert R. Alfano
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Physics ,Physics::Popular Physics ,MAJORANA ,Angular momentum ,Photon ,Transmission (telecommunications) ,Quantum electrodynamics ,High Energy Physics::Phenomenology ,Vortex beam ,Brain tissue ,Physics::History of Physics ,Circular polarization - Abstract
For the first time, we show mathematically that entangled states of class of vector beams are Majorana–like. Experimentally, enhanced transmission is observed in mouse brain from Majorana–like vector photons with orbital angular momentum.
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- 2019
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104. Preface
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Robert R. Alfano and Lingyan Shi
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- 2019
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105. Majorana-like Photons from Vector Vortex Beams of Classically Entangled Photons Propagating through Brain
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Sandra Mamani, Daniel A. Nolan, Lingyan Shi, and Robert R. Alfano
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Physics ,Light transmission ,Angular momentum ,Photon ,High Energy Physics::Phenomenology ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Physics::History of Physics ,010309 optics ,Physics::Popular Physics ,MAJORANA ,Photon entanglement ,Quantum mechanics ,0103 physical sciences ,Vortex beam ,Photon polarization ,0210 nano-technology ,Circular polarization - Abstract
Majorana like photons are introduced from class of classically entangled Cylindrical Vector Vortex Beams. An enhanced transmission is observed in mouse brain from Majorana vector photons with orbital angular momentum due to their non-separability.
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- 2019
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106. Neurophotonics and Biomedical Spectroscopy
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Lingyan Shi
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- 2019
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107. Neurophotonics and Biomedical Spectroscopy
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Robert R. Alfano, Lingyan Shi, Robert R. Alfano, and Lingyan Shi
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- Spectroscopic imaging, Optical spectroscopy
- Abstract
Neurophotonics and Biomedical Spectroscopy addresses the novel state-of-the-art work in non-invasive optical spectroscopic methods that detect the onset and progression of diseases and other conditions, including pre-malignancy, cancer, Alzheimer's disease, tissue and cell response to therapeutic intervention, unintended injury and laser energy deposition. The book then highlights research in neurophotonics that investigates single and multi-photon excitation optical signatures of normal/diseased nerve tissues and in the brain, providing a better understanding of the underlying biochemical and structural changes of tissues and cells that are responsible for the observed spectroscopic signatures. Topics cover a wide array of well-established UV, visible, NIR and IR optical and spectroscopic techniques and novel approaches to diagnose tissue changes, including: label free in vivo and ex vivo fluorescence spectroscopy, Stoke shift spectroscopy, spectral imaging, Resonance Raman spectroscopy, multiphoton two Photon excitation, and more. - Provides an overview of the spectroscopic properties of tissue and tissue-light interaction, describing techniques to exploit these properties in imaging - Explores the potential and significance of molecule-specific imaging and its capacity to reveal vital new information on nanoscale structures - Offers a concise overview of different spectroscopic methods and their potential benefits for solving diagnostic and therapeutic problems
- Published
- 2019
108. Special classes of optical vector vortex beams are Majorana-like photons
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Sandra Mamani Reyes, Robert R. Alfano, Daniel A. Nolan, and Lingyan Shi
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Physics ,Wavefront ,Photon ,business.industry ,Physics::Optics ,Optical computing ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Polarization (waves) ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,Vortex ,010309 optics ,MAJORANA ,Optics ,0103 physical sciences ,Electrical and Electronic Engineering ,Physical and Theoretical Chemistry ,0210 nano-technology ,business ,Optical vortex ,Quantum computer - Abstract
Majorana-like photons are introduced in this paper, which are attributed to the polarization and wavefront of special function class of optical vector vortex beams. A Majorana photon is a photon that is identical to its anti-photon. It has within itself both chirality, right and left-handed twist in polarization and wavefront. A theory is presented which reveals that certain types of cylindrical vector vortex photons that are spin–orbit coupled beams – radial, and azimuthal Laguerre-Gaussian, hybrid π -vector beams, and Airy beams – are Majorana-like based on their SAM (polarization) and OAM (wavefront) modes Majorana-like vector photons may play an important role in free-space fiber communication, propagation, quantum computing, optical computing, and imaging in turbid and bio-media as non-separable entangled polarized photons— a quantum mechanical entity.
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- 2020
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109. Background-free imaging of chemical bonds by a simple and robust frequency-modulated stimulated Raman scattering microscopy
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Wei Min, Zhilun Zhao, Naixin Qian, Yupeng Miao, Hanqing Xiong, and Lingyan Shi
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Chemical imaging ,Femtosecond pulse shaping ,Materials science ,Physics::Optics ,Bioengineering ,Optical Physics ,02 engineering and technology ,01 natural sciences ,Noise (electronics) ,Article ,law.invention ,010309 optics ,symbols.namesake ,Optics ,law ,0103 physical sciences ,Microscopy ,Electrical and Electronic Engineering ,Communications Technologies ,business.industry ,021001 nanoscience & nanotechnology ,Laser ,Pulse shaping ,Atomic and Molecular Physics, and Optics ,symbols ,0210 nano-technology ,business ,Raman spectroscopy ,Raman scattering - Abstract
Being able to image chemical bonds with high sensitivity and speed, stimulated Raman scattering (SRS) microscopy has made a major impact in biomedical optics. However, it is well known that the standard SRS microscopy suffers from various backgrounds, limiting the achievable contrast, quantification and sensitivity. While many frequency-modulation (FM) SRS schemes have been demonstrated to retrieve the sharp vibrational contrast, they often require customized laser systems and/or complicated laser pulse shaping or introduce additional noise, thereby hindering wide adoption. Herein we report a simple but robust strategy for FM-SRS microscopy based on a popular commercial laser system and regular optics. Harnessing self-phase modulation induced self-balanced spectral splitting of picosecond Stokes beam propagating in standard single-mode silica fibers, a high-performance FM-SRS system is constructed without introducing any additional signal noise. Our strategy enables adaptive spectral resolution for background-free SRS imaging of Raman modes with different linewidths. The generality of our method is demonstrated on a variety of Raman modes with effective suppressing of backgrounds including non-resonant cross phase modulation and electronic background from two-photon absorption or pump-probe process. As such, our method is promising to be adopted by the SRS microscopy community for background-free chemical imaging.
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- 2020
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110. Comparison of continuous wave versus picosecond SRS and the resonance SRS effect
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Pavel Shumyatsky, Yury Budansky, Lingyan Shi, Robert R. Alfano, and Laura A. Sordillo
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Materials science ,Cost-Benefit Analysis ,Signal-To-Noise Ratio ,Inelastic scattering ,Spectrum Analysis, Raman ,Vibration ,01 natural sciences ,law.invention ,Acetone ,010309 optics ,Mice ,symbols.namesake ,Optics ,law ,0103 physical sciences ,Microscopy ,Animals ,Electrical and Electronic Engineering ,Engineering (miscellaneous) ,business.industry ,Lasers ,Methanol ,Brain ,Resonance ,Equipment Design ,Models, Theoretical ,Laser ,Carotenoids ,Atomic and Molecular Physics, and Optics ,Picosecond ,symbols ,Optoelectronics ,Continuous wave ,business ,Raman spectroscopy ,Raman scattering - Abstract
Stimulated Raman scattering (SRS) is a powerful optical technique for probing the vibrational states of molecules in biological tissues and provides greater signal intensities than when using spontaneous Raman scattering. In this study, we examined the use of continuous wave (cw) and picosecond (ps) laser excitations to generate SRS signals in pure methanol, a carotene–methanol solution, acetone, and brain tissue samples. The cw-SRS system, which utilized two cw lasers, produced better signal-to-noise (S/N) than the conventional ps-SRS system, suggesting that the cw-SRS system is an efficient and cost-effective approach for studying SRS in complex systems like the brain. The cw-SRS approach will reduce the size of the SRS system, allowing for stimulated Raman gain/loss microscopy. In addition, we showed that there exists a resonance SRS (RSRS) effect from the carotene–methanol solution and brain tissue samples using cw laser excitations. The RSRS effect will further improve the signal-to-noise and may be utilized as an enhanced, label-free SRS microscopic tool for the study of biological tissues.
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- 2020
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111. Long non-coding antisense RNA GAS6-AS1 supports gastric cancer progression via increasing GAS6 expression
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Xiangjian Chen, Shi Li, Hua Zhu, Qiantong Dong, Peichen Zhang, and Lingyan Shi
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0301 basic medicine ,Carcinogenesis ,Mice, Nude ,Biology ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Downregulation and upregulation ,Cell Movement ,Stomach Neoplasms ,Cell Line, Tumor ,Proto-Oncogene Proteins ,Sense (molecular biology) ,Genetics ,Animals ,Humans ,RNA, Antisense ,RNA, Small Interfering ,Gene ,Cell Proliferation ,Mice, Inbred BALB C ,Cell growth ,GAS6 ,Stomach ,Receptor Protein-Tyrosine Kinases ,General Medicine ,Prognosis ,Xenograft Model Antitumor Assays ,Axl Receptor Tyrosine Kinase ,In vitro ,Antisense RNA ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,HEK293 Cells ,030220 oncology & carcinogenesis ,Gene Knockdown Techniques ,Cancer research ,Disease Progression ,Intercellular Signaling Peptides and Proteins ,Female ,RNA, Long Noncoding ,Signal transduction ,Signal Transduction - Abstract
Objective As one broader class of non-coding RNAs (lncRNAs), non-coding antisense (AS) transcripts are functionally characterized to play pivotal roles in various pathophysiological processes, including tumor biology. Methods In this study, the exact biological functions and regulation mechanisms of GAS6-AS1 in gastric cancer (GC) was examined. Results The expression of GAS6-AS1 was markedly upregulated in GC tissues and is associated with advanced stage (III + IV) of GC patients. Gain-of-function and loss-of-function experiments showed that GAS6-AS1 promoted cell proliferation, migration, invasion ability in vitro and xenograft tumor growth in vivo by promoting entry into S-phase. The mechanistic investigations showed that GAS6-AS1 can control the expression of its cognate sense gene GAS6 at the transcriptional or translational levels by forming a RNA-RNA duplex, consequently inducing an increase of AXL level and driveling AXL signaling pathway activation. Conclusions Taken together, our studies indicate that GAS6-AS1 significantly driving the aggressive phenotype in GC through activating its cognate sense gene GAS6, and provides a more complete understanding of GAS6-AS1 as a potential therapeutic target for GC.
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- 2018
112. Voxel-based algorithm for calculating 3D computer generated hologram with occlusion effect
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Feng Zhou, Lingyan Shi, Yanfeng Su, and Jianhong Wu
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Spatial light modulator ,Computer science ,Holography ,Fresnel lens ,computer.software_genre ,law.invention ,Position (vector) ,law ,Voxel ,Lookup table ,Holographic display ,Segmentation ,computer ,Algorithm - Abstract
In this paper, a voxel-based algorithm for calculating phase-only three-dimensional (3D) computer generated holograms (CGHs) with occlusion effect is proposed. The 3D object can be firstly decomposed into a number of self-luminous voxels, which is the minimum imaging unit of the object. According to occlusion relationship, the 3D position and propagation direction of each voxel can be determined, where the axial position, lateral position and the propagation direction are precisely controlled by digital Fresnel lens, digital grating and hologram segmentation, respectively. Then, in order to reconstruct the 3D object composed of multiple voxels, the pre-calculated holograms for all of the voxels are synthesized with the interweaving arrangement method. Moreover, the look-up-table (LUT) method is used in the hologram generation process to improve the calculating speed. An experimental verification system for the proposed algorithm is constructed using a single SLM. The optical reconstruction results demonstrate that the CGHs generated by the proposed algorithm can successfully provide 3D sensation with occlusion effect.
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- 2018
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113. Optical imaging of metabolic dynamics in animals
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Kimara L. Targoff, E. Silveira, Zhixing Chen, Carmen de Sena-Tomas, Chaogu Zheng, Yihui Shen, Luyuan Zhang, Mian Wei, Lingyan Shi, Wei Min, and Chang Liu
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0301 basic medicine ,In situ ,Image Processing ,General Physics and Astronomy ,Contrast Media ,02 engineering and technology ,Spectrum Analysis, Raman ,Inbred C57BL ,Scattering ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Computer-Assisted ,Microscopy ,Chlorocebus aethiops ,Image Processing, Computer-Assisted ,Protein biosynthesis ,Scattering, Radiation ,lcsh:Science ,Raman ,Tissue homeostasis ,Zebrafish ,0303 health sciences ,Multidisciplinary ,Tumor ,Radiation ,Chemistry ,Optical Imaging ,021001 nanoscience & nanotechnology ,Lipids ,030220 oncology & carcinogenesis ,Deuterium oxide ,COS Cells ,symbols ,0210 nano-technology ,Raman scattering ,Imaging systems in medicine ,Macromolecule ,inorganic chemicals ,Macromolecular Substances ,Science ,1.1 Normal biological development and functioning ,Bioengineering ,General Biochemistry, Genetics and Molecular Biology ,Article ,Cercopithecus aethiops ,Cell Line ,03 medical and health sciences ,symbols.namesake ,Rare Diseases ,Biosynthesis ,Underpinning research ,Cell Line, Tumor ,Animals ,Humans ,Deuterium Oxide ,Caenorhabditis elegans ,030304 developmental biology ,Spectrum Analysis ,General Chemistry ,Raman effect ,Deuterium ,Lipid Metabolism ,Carbon ,Mice, Inbred C57BL ,Tissues--Imaging ,030104 developmental biology ,Metabolism ,Temporal resolution ,Hela Cells ,Biophysics ,lcsh:Q ,Raman spectroscopy ,Neoplasm Transplantation ,HeLa Cells - Abstract
Direct visualization of metabolic dynamics in living animals with high spatial and temporal resolution is essential to understanding many biological processes. Here we introduce a platform that combines deuterium oxide (D2O) probing with stimulated Raman scattering (DO-SRS) microscopy to image in situ metabolic activities. Enzymatic incorporation of D2O-derived deuterium into macromolecules generates carbon–deuterium (C–D) bonds, which track biosynthesis in tissues and can be imaged by SRS in situ. Within the broad vibrational spectra of C–D bonds, we discover lipid-, protein-, and DNA-specific Raman shifts and develop spectral unmixing methods to obtain C–D signals with macromolecular selectivity. DO-SRS microscopy enables us to probe de novo lipogenesis in animals, image protein biosynthesis without tissue bias, and simultaneously visualize lipid and protein metabolism and reveal their different dynamics. DO-SRS microscopy, being noninvasive, universally applicable, and cost-effective, can be adapted to a broad range of biological systems to study development, tissue homeostasis, aging, and tumor heterogeneity., Non-destructive methods to image metabolism in situ in living tissues are limited. Here the authors combine deuterium oxide probing and stimulated Raman scattering microscopy to image lipid metabolic dynamics and protein synthesis in cells and in vivo in mice, C. elegans, and zebrafish.
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- 2018
114. Resonance Raman and fluorescence spectroscopy to evaluate increased brain kynurenine pathway activity in samples from patients with neurodegenerative disease
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Peter P. Sordillo, Lin Zhang, Vidyasagar Sriramoju, Lingyan Shi, Robert R. Alfano, and Laura A. Sordillo
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Kynurenine pathway ,Chemistry ,Tryptophan ,Resonance ,01 natural sciences ,Fluorescence ,Fluorescence spectroscopy ,010309 optics ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Nuclear magnetic resonance ,0103 physical sciences ,symbols ,Raman spectroscopy ,030217 neurology & neurosurgery - Abstract
Resonance Raman and fluorescence spectroscopy were used to assess increased kynurenine pathway activity in brain samples from Alzheimer’s patients and age-matched controls. Increased activity was seen in areas of the brain involved in Alzheimer’s disease.
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- 2018
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115. Transmission of classically entangled beams through mouse brain tissue
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Romir Karnik, Sandra Mamani, Tahmid Ahmed, Daniel A. Nolan, Adrián Rodríguez-Contreras, Robert R. Alfano, and Lingyan Shi
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Physics ,Photons ,Optical Phenomena ,Linear polarization ,General Engineering ,Physics::Optics ,General Physics and Astronomy ,Brain ,General Chemistry ,Brain tissue ,Polarization (waves) ,01 natural sciences ,Molecular physics ,General Biochemistry, Genetics and Molecular Biology ,Light scattering ,010309 optics ,Mice ,0103 physical sciences ,Transmittance ,Animals ,General Materials Science ,010306 general physics ,Circular polarization ,Beam (structure) ,Structured light - Abstract
Light transmission of Laguerre-Gaussian vector vortex beams in different local regions in mouse brain tissue is investigated. Transmittance is measured in the ballistic and diffusive regions with various polarizations states and orbital angular momentums (OAM). The transmission change observed with structured light other than linear polarization is attributed to chiroptical phenomena from the chiral brain media and the handedness of the light. For instance, classically entangled beams showed higher transmittance and constant value dependency on OAM modes than linear modes did. Also, circular polarization beam transmittance showed strong increase with topical charge OAM ( l), which could be attributed to chiroptical effect.
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- 2018
116. Resonance Raman imaging for detecting and monitoring molecular pathological changes in human brain tumors related to Warburg effect
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Chunyuan Zhang, Gangge Cheng, Cheng-hui Liu, Yan Zhou, Xinguang Yu, Binlin Wu, Yang Yang, Robert R. Alfano, Hailong Hu, Ke Zhu, and Lingyan Shi
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Chemistry ,Confocal ,Resonance ,Histology ,Human brain ,medicine.disease ,Warburg effect ,symbols.namesake ,Nuclear magnetic resonance ,medicine.anatomical_structure ,Anaerobic glycolysis ,Glioma ,medicine ,symbols ,Raman spectroscopy - Abstract
The goal of the research is to determine the prognostic molecular pathological changes in components and composition, for human brain glioma gradings in comparison with normal tissues in three-dimensional Raman imaging profiles by visible Resonance Raman (VRR) imaging. VRR images from twenty-five specimens including three healthy tissues, one normal control, and twenty-one glioma tissues of grades II, II-III and III-IV with histology examination were measured and investigated using WITec300R confocal micro Raman imaging system with laser excitation of 532nm. Two-dimensional RR spectral mappings performed in 20μm x 20μm generated 400 images which integrated the intensity of the specific biochemical bonds as the third dimension. The three-dimension (3D) map demonstrated the spatial distributions of three selected sets of RR spectra of molecular biomarkers, and revealed significant differences in the spectra between normal and glioma tissues of different grades due to the composition changes in key molimageecules. These RR molecular spectral fingerprints have displayed: a clear enhancement of RR vibrational modes at 1129-1131cm-1 and 2934cm-1 which are supposed to be arising from lipoproteins; evident decreased RR vibrational modes at 1442cm-1 and 2854cm-1 which are from saturated fatty acids bonds in all-grades of glioma brain tissues compared with normal tissues; and the enhanced RR spectral modes of 1129 cm-1 and 2938cm-1 which suggest contribution from lactate. These findings may provide a novel proof for anaerobic glycolysis metabolic process in brain glioma cancer tissues that has been explained by Warburg effects.
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- 2018
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117. Alzheimer's disease: evaluation using label-free, stainless, fluorescence of tryptophan metabolites and the kynurenine pathway
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Peter P. Sordillo, Lin Zhang, Lingyan Shi, Vidyasagar Sriramoju, Robert R. Alfano, and Laura A. Sordillo
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medicine.medical_specialty ,Kynurenine pathway ,Tryptophan ,01 natural sciences ,010309 optics ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Endocrinology ,Tryptophan Metabolite ,Kynurenic acid ,chemistry ,030220 oncology & carcinogenesis ,Internal medicine ,0103 physical sciences ,medicine ,Interferon gamma ,Serotonin ,Indoleamine 2,3-dioxygenase ,Kynurenine ,medicine.drug - Abstract
Under stress conditions, pro-inflammatory cytokines, such as tumor necrosis factor-alpha, interleukin-1 beta, interleukin 6 and interferon gamma are released. It is known that these cytokines stimulate indoleamine 2,3-dioxygenase (IDO) and tryptophan 2,3-dioxygenase (TDO), which increase tryptophan metabolism through the kynurenine pathway, and that this can cause increased production of neurotoxic compounds. Brain tissues from Alzheimer’s disease patients and agematched controls were investigated using label-free fluorescence spectroscopy. Tryptophan (exc. 280/ em. 340 nm) and its metabolites (N-formyl-L-kynurenine (exc. 325/em. 434 nm), kynurenine (exc. 365/em. 480 nm) and kynurenic acid (exc. 330/em. 390 nm)) have distinct spectral profiles. Preliminary results show a difference in the optical signatures in three important areas of the brain (hippocampus, BA 9, BA 17) between patients with Alzheimer’s disease and agedmatched controls (normal), and a marked relative increase in tryptophan in the Alzheimer’s patients. Thus determinations of tryptophan to tryptophan metabolite ratios could potentially be used to measure IDO and TDO activity and the degree of inflammation in the brain. This label-free optical technique may be useful in the study of Alzheimer’s and other neurodegenerative diseases.
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- 2018
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118. Statistical analysis and machine learning algorithms for optical biopsy
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Laura A. Sordillo, Robert R. Alfano, Vidyasagar Sriramoju, Jason T. Smith, Jacob Bailin, Susie Boydston-White, Cheng-hui Liu, Binlin Wu, Hugh Beckman, Chunyuan Zhang, Lingyan Shi, and Lin Zhang
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Basis (linear algebra) ,Artificial neural network ,Computer science ,business.industry ,Quantitative Biology::Tissues and Organs ,Physics::Medical Physics ,Optical Biopsy ,Machine learning ,computer.software_genre ,Autoencoder ,Non-negative matrix factorization ,Support vector machine ,Kernel (statistics) ,Principal component analysis ,Artificial intelligence ,business ,computer ,Algorithm - Abstract
Analyzing spectral or imaging data collected with various optical biopsy methods is often times difficult due to the complexity of the biological basis. Robust methods that can utilize the spectral or imaging data and detect the characteristic spectral or spatial signatures for different types of tissue is challenging but highly desired. In this study, we used various machine learning algorithms to analyze a spectral dataset acquired from human skin normal and cancerous tissue samples using resonance Raman spectroscopy with 532nm excitation. The algorithms including principal component analysis, nonnegative matrix factorization, and autoencoder artificial neural network are used to reduce dimension of the dataset and detect features. A support vector machine with a linear kernel is used to classify the normal tissue and cancerous tissue samples. The efficacies of the methods are compared.
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- 2018
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119. Laguerre-Gaussian Vortex Beam Transmission through Mouse Brain Tissue
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Daniel A. Nolan, Robert R. Alfano, Sandra Mamani, and Lingyan Shi
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Physics ,Light transmission ,business.industry ,Quantitative Biology::Tissues and Organs ,Gaussian ,Physics::Optics ,Brain tissue ,01 natural sciences ,030218 nuclear medicine & medical imaging ,010309 optics ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Optics ,Transmission (telecommunications) ,0103 physical sciences ,Vortex beam ,Transmittance ,symbols ,Laguerre polynomials ,business - Abstract
Light transmission of Laguerre-Gaussian (LG) vortex beams in different local regions in mouse brain tissue is investigated. Transmittance is measured in ballistic region with various polarizations states and orbital angular momentums (OAM).
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- 2018
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120. Optical fluorescence to assess abnormal tryptophan metabolic activity in brain samples from Alzheimer’s patients
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Lingyan Shi, Robert R. Alfano, Lin Zhang, Peter P. Sordillo, Laura A. Sordillo, and Vidyasagar Sriramoju
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Chemistry ,Tryptophan ,Hippocampus ,medicine.disease ,01 natural sciences ,Fluorescence ,Fluorescence spectroscopy ,Optical fluorescence ,010309 optics ,Tryptophan Metabolite ,nervous system ,Biochemistry ,0103 physical sciences ,medicine ,Dementia ,Metabolic activity - Abstract
Brain samples from Alzheimer's patients and aged-matched controls were studied using label-free fluorescence. Increased tryptophan metabolite to tryptophan ratios were seen in the hippocampus and Brodmann's area 9 in Alzheimer's patients as compared to normal.
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- 2018
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121. Assessment of basal cell carcinoma from normal human skin tissues using Resonance Raman spectroscopy
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Laura A. Sordillo, Robert R. Alfano, Hugh Beckman, Vidyasagar Sriramoju, Susie Boydston-White, Binlin Wu, Chunyuan Zhang, Cheng-hui Liu, Zhe Pei, Lingyan Shi, and Lin Zhang
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integumentary system ,Chemistry ,Resonance Raman spectroscopy ,Resonance ,Human skin ,medicine.disease ,030207 dermatology & venereal diseases ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Nuclear magnetic resonance ,symbols ,medicine ,Basal cell carcinoma ,skin and connective tissue diseases ,Normal skin ,Spectroscopy ,Raman spectroscopy ,Raman scattering - Abstract
VRR spectroscopy was used for BCC and normal skin tissues with 532nm excitation. The spectra showed significant changes in collagen, carotenoids and lipids. These enhanced fingerprints demonstrate a potential use as label-free pathology method.
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- 2018
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122. Diagnosis of glioma brain cancer using visible resonance Raman spectroscopy
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Kai Wang, Robert R. Alfano, Yan Zhou, Xinguang Yu, Lingyan Shi, Binlin Wu, Cheng-hui Liu, Chunyuan Zhang, and Gangge Cheng
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Materials science ,Quantitative Biology::Tissues and Organs ,Physics::Medical Physics ,Resonance Raman spectroscopy ,Resonance ,02 engineering and technology ,021001 nanoscience & nanotechnology ,medicine.disease ,01 natural sciences ,Quantitative Biology::Cell Behavior ,Brain cancer ,010309 optics ,symbols.namesake ,Nuclear magnetic resonance ,Glioma ,0103 physical sciences ,symbols ,medicine ,0210 nano-technology ,Spectral data ,Spectroscopy ,Raman spectroscopy ,Excitation - Abstract
Resonance Raman spectroscopy using 532nm excitation was used to distinguish normal brain tissue from different grades of glioma tissues. Principal component analysis was used to analyze the spectral data and achieved high accuracy.
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- 2018
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123. Transmission in near-infrared optical windows for deep brain imaging
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Lingyan Shi, Laura A. Sordillo, Robert R. Alfano, and Adrián Rodríguez-Contreras
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Fluorescence-lifetime imaging microscopy ,Materials science ,Optical Phenomena ,Infrared Rays ,total attenuation length ,Infrared ,Medical Biotechnology ,General Physics and Astronomy ,Optical Physics ,02 engineering and technology ,deep brain imaging ,near-infrared ,01 natural sciences ,Article ,General Biochemistry, Genetics and Molecular Biology ,law.invention ,Scattering ,010309 optics ,Medicinal and Biomolecular Chemistry ,Optics ,transmittance ,law ,0103 physical sciences ,Transmittance ,Scattering, Radiation ,Animals ,General Materials Science ,Absorption (electromagnetic radiation) ,Radiation ,golden optical tissue window ,business.industry ,Optical Imaging ,Near-infrared spectroscopy ,Neurosciences ,General Engineering ,Brain ,General Chemistry ,021001 nanoscience & nanotechnology ,Laser ,Diffuse optical imaging ,Rats ,Optoelectronics & Photonics ,Femtosecond ,Optoelectronics ,0210 nano-technology ,business - Abstract
Near-infrared (NIR) radiation has been employed using one- and two-photon excitation of fluorescence imaging at wavelengths 650-950nm (optical window I) for deep brain imaging; however, longer wavelengths in NIR have been overlooked due to a lack of suitable NIR-low band gap semiconductor imaging detectors and/or femtosecond laser sources. This research introduces three new optical windows in NIR and demonstrates their potential for deep brain tissue imaging. The transmittances are measured in rat brain tissue in the second (II, 1,100-1,350nm), third (III, 1,600-1,870nm), and fourth (IV, centered at 2,200nm) NIR optical tissue windows. The relationship between transmission and tissue thickness is measured and compared with the theory. Due to a reduction in scattering and minimal absorption, window III is shown to be the best for deep brain imaging, and windows II and IV show similar but better potential for deep imaging than window I.
- Published
- 2015
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124. The effects of fabrication temperature on current-voltage characteristics and energy efficiencies of quantum dot sensitized ZnOH-GO hybrid solar cells.
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Islam, S. M. Z., Gayen, Taposh, Naing Tint, Lingyan Shi, Seredych, Mykola, Bandosz, Teresa J., and Alfano, Robert
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TEMPERATURE ,CADMIUM selenide ,QUANTUM dots ,HYBRID solar cells ,GRAPHITE oxide ,PHOTOVOLTAIC power generation ,POTASSIUM iodide ,POLYELECTROLYTES - Abstract
The effects of fabrication temperature are investigated on the performance of CdSe quantum dot (QD)-sensitized hybrid solar cells of the composite material of zinc (hydr)oxide (ZnOH-GO)with 2 wt.% graphite oxide. The current-voltage (I-V) and photo-current measurements show that higher fabrication temperatures yield greater photovoltaic power conversion efficiencies that essentially indicate more efficient solar cells. Two Photon Fluorescence images show the effects of temperature on the internal morphologies of the solar devices based on such materials. The CdSe-QD sensitized ZnOH-GO hybrid solar cells fabricated at 450 °C showing conversion of ~10.60% under a tungsten lamp (12.1 mW/cm²) are reported here, while using potassium iodide as an electrolyte. The output photocurrent, I (μA) with input power, P (mW/cm²) is found to be superlinear, showing a relation of I=P
n , where n=1.4. [ABSTRACT FROM AUTHOR]- Published
- 2014
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125. Deep Imaging in Tissue and Biomedical Materials : Using Linear and Nonlinear Optical Methods
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Lingyan Shi, Robert R. Alfano, Lingyan Shi, and Robert R. Alfano
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- Nonlinear optics, Optical images, Diagnostic imaging
- Abstract
The use of light for probing and imaging biomedical media is promising for the development of safe, noninvasive, and inexpensive clinical imaging modalities with diagnostic ability. The advent of ultrafast lasers has enabled applications of nonlinear optical processes, which allow deeper imaging in biological tissues with higher spatial resolution. This book provides an overview of emerging novel optical imaging techniques, Gaussian beam optics, light scattering, nonlinear optics, and nonlinear optical tomography of tissues and cells. It consists of pioneering works that employ different linear and nonlinear optical imaging techniques for deep tissue imaging, including the new applications of single- and multiphoton excitation fluorescence, Raman scattering, resonance Raman spectroscopy, second harmonic generation, stimulated Raman scattering gain and loss, coherent anti-Stokes Raman spectroscopy, and near-infrared and mid-infrared supercontinuum spectroscopy. The book is a comprehensive reference of emerging deep tissue imaging techniques for researchers and students working in various disciplines.
- Published
- 2017
126. A laser for complex spatial modes
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Robert R. Alfano, Giovanni Milione, Lingyan Shi, and Enrique J. Galvez
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Materials science ,business.industry ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Laser ,01 natural sciences ,GeneralLiterature_MISCELLANEOUS ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,law.invention ,010309 optics ,Set (abstract data type) ,Optics ,law ,Liquid crystal ,On demand ,0103 physical sciences ,Microscopy ,Optoelectronics ,0210 nano-technology ,business - Abstract
A cavity design that makes it possible to directly generate Laguerre–Gaussian modes on demand looks set to benefit applications in microscopy and data communications.
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- 2016
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127. Descriptive Study of Conjunctival Cysts: A Rare Complication after Strabismus Surgery
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Lingyan Shi, Hui Jiang, and Xiaoshan Min
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030213 general clinical medicine ,medicine.medical_specialty ,Article Subject ,business.industry ,Postoperative complication ,medicine.disease ,Conjunctival Epithelium ,Surgery ,03 medical and health sciences ,Ophthalmology ,0302 clinical medicine ,lcsh:Ophthalmology ,lcsh:RE1-994 ,Conjunctival Cyst ,030221 ophthalmology & optometry ,medicine ,Etiology ,Cyst ,Complication ,business ,Pathological ,Research Article ,Strabismus surgery - Abstract
Aim. Conjunctival cyst is one of the uncommon complications of strabismus surgery. It is important for surgeons and patients to be aware of and take precautions to minimize the risk. This study aimed to explore the clinical manifestations, etiology, and prognosis of conjunctival cyst at the operative site after strabismus surgery.Methods. The data of 1675 patients were included in our retrospective analysis, who underwent strabismus surgery at the Xiangya Hospital of Central South University between 2010 and 2016. During the postoperative follow-up, conjunctival cyst was found in 7 cases (7 eyes; 0.4% detective rate of all cases). The clinical characteristics, prognosis, and follow-up data were recorded together with the results of pathological and bacteriological tests.Results. Seven patients between the age of 3 years 8 months and 39 years, with the mean age of 12.71 years (12.71 ± 12.59, years of age), were included in the study. Strabismus surgery affected 13 recti, 8 medial and 5 lateral recti, and 3 obliques (all inferior oblique). Conjunctival cyst was detected in seven patients between 10 days and 6 months postoperatively (42.57 ± 61.11, detected days). In six cases, the cyst was detected at the nasal (3 cases) or temporal side (other 3 cases), and at the fornix in one case. Four out of 7 patients underwent cyst excision, and methicillin-resistant Staphylococcus aureus (MRSA) was detected in one patient.Conclusions. Conjunctival cyst is a rare postoperative complication of strabismus surgery, conjunctival epithelium implantation should be the primary cause, and infection might exaggerate the situation. A longer duration of the surgical procedure could increase the possibility of infection, which could be accompanied with a greater tendency to the occurrence of conjunctival cyst.
- Published
- 2017
128. Long noncoding RNA FEZF1-AS1 indicates a poor prognosis of gastric cancer and promotes tumorigenesis via activation of Wnt signaling pathway
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Peichen Zhang, Lingyan Shi, Hua Zhu, Shi Li, Xiaoli Wu, and Xiangjian Chen
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0301 basic medicine ,Adult ,Male ,Carcinogenesis ,Tumor initiation ,Biology ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Stomach Neoplasms ,Cell Line, Tumor ,medicine ,Humans ,RNA, Antisense ,Wnt Signaling Pathway ,Pharmacology ,Wnt signaling pathway ,Cancer ,General Medicine ,Cell cycle ,Middle Aged ,medicine.disease ,Prognosis ,Long non-coding RNA ,Antisense RNA ,Repressor Proteins ,Survival Rate ,030104 developmental biology ,030220 oncology & carcinogenesis ,Cancer research ,Female ,RNA, Long Noncoding ,Transcription Factors - Abstract
Long non-coding RNAs (lncRNAs) have been demonstrated that it plays very important role in development and progression of carcinomas. LncRNA FEZF1 antisense RNA 1 (FEZF1-AS1) has been proved to be implicated in tumor initiation and progression of various cancers, recently. Nevertheless, the biological function and clinical significance of lncRNA FEZF1-AS1 in gastric cancer (GC) are not clear enough. Here, we concentrated on the association of FEZF1-AS1 expression and clinicopathological factors in GC tissues and cells. Moreover, we explored the potential regulatory mechanisms. The results showed that lncRNA FEZF1-AS1 was observably upregulated in human GC tissues and GC cell lines, compared with the adjacent non-tumor tissues and human gastric epithelial cell line (GES-1). Moreover, high expression of lncRNA FEZF1-AS1 was significantly associated with later stage and higher grade. Furthermore, Kaplan-Meier survival analysis was conducted, indicating that lncRNA FEZF1-AS1 may be an independent prognostic factor in GC. Additionally, the area under the receiver operating characteristic (ROC) curve of lncRNA FEZF1-AS1 exhibited its diagnostic value in GC. Notably, whenever the lncRNA FEZF1-AS1 was silenced, the proliferation of GC cells were significantly inhibited and the cell cycle was arrested at a G0/G1 stage in GC cells. Furthermore, downregulation of lncRNA FEZF1-AS1 could suppress the activation of the Wnt/β-catenin signaling pathway. Conclusively, our findings indicated that lncRNA FEZF1-AS1 could be considered as a novel biomarker for the treatment of GC.
- Published
- 2017
129. Alzheimer mouse brain tissue measured by time resolved fluorescence spectroscopy using single‐ and multi‐photon excitation of label free native molecules
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Adrián Rodríguez-Contreras, Robert R. Alfano, Lingyan Shi, Bidyut Baran Das, and Yury Budansky
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Time Factors ,General Physics and Astronomy ,01 natural sciences ,Article ,General Biochemistry, Genetics and Molecular Biology ,010309 optics ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Nuclear magnetic resonance ,Alzheimer Disease ,0103 physical sciences ,Animals ,General Materials Science ,Spectroscopy ,Flavin adenine dinucleotide ,Photons ,Streak camera ,General Engineering ,Wild type ,Absorption, Radiation ,Brain ,General Chemistry ,NAD ,Fluorescence ,Coupling (electronics) ,Spectrometry, Fluorescence ,chemistry ,Flavin-Adenine Dinucleotide ,Time-resolved spectroscopy ,030217 neurology & neurosurgery ,Ex vivo - Abstract
Time resolved spectroscopic measurements with single-photon and multi-photon excitation of native molecules were performed ex vivo on brain tissues from an Alzheimer’s disease (AD) and a wild type (WT) mouse model using a streak camera. The fluorescence decay times of native NADH and FAD show a longer relaxation time in AD than in WT tissue, suggesting less non-radiative processes in AD. The longer emission time of AD may be attributed to the coupling of the key native building block molecules to the amyloid-tau and/or to the caging of the native fluorophores by the deposition of amyloid-beta or tau plaques and neurofibrillary tangles that affect the local non-radiative interactions.
- Published
- 2017
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130. Nonlocal correlations of polarization-entangled photons through brain tissue (Conference Presentation)
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Robert R. Alfano, Enrique J. Galvez, and Lingyan Shi
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Physics ,Optics ,Photon entanglement ,Photon ,business.industry ,Quantum mechanics ,Brain tissue ,business ,Polarization (waves) - Published
- 2017
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131. Deep Imaging in Tissue and Biomedical Materials
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Laura Sordillo, Alexander Doronin, Daniel Orringer, BURCU KARAGOZ, Angela Seddon, and Lingyan Shi
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Wavelength ,Materials science ,Optical imaging ,Optics ,business.industry ,business - Published
- 2017
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132. Propagation of Laguerre-Gaussian vortex beams through mouse brain tissue
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Robert R. Alfano, Wubao Wang, Lingyan Shi, Adrián Rodríguez-Contreras, and Lukas Lindwasser
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Physics ,business.industry ,Quantitative Biology::Tissues and Organs ,Gaussian ,Physics::Optics ,02 engineering and technology ,Brain tissue ,021001 nanoscience & nanotechnology ,Interference (wave propagation) ,01 natural sciences ,Molecular physics ,Vortex ,010309 optics ,symbols.namesake ,Optics ,Transition point ,0103 physical sciences ,Transmittance ,Laguerre polynomials ,symbols ,0210 nano-technology ,Ballistic photon ,business ,Computer Science::Information Theory - Abstract
Transmittance of Laguerre-Gaussian (LG) vortex beams in mouse brain tissue is measured with different orbital angular momentums (OAM). The transition point from ballistic to diffusive region for the mouse brain tissue is determined at about 480 μm. The observed transmittances of the LG beams show independence on OAM modes in both ballistic and diffusive regions, which may be attributed to the interference effects from brain tissue.
- Published
- 2017
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133. Propagation of Gaussian and Laguerre-Gaussian vortex beams through mouse brain tissue
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Wubao Wang, Lingyan Shi, Robert R. Alfano, Adrián Rodríguez-Contreras, and Lukas Lindwasser
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Light ,Optical Phenomena ,Gaussian ,Quantitative Biology::Tissues and Organs ,Normal Distribution ,General Physics and Astronomy ,02 engineering and technology ,Interference (wave propagation) ,01 natural sciences ,Molecular physics ,General Biochemistry, Genetics and Molecular Biology ,Article ,010309 optics ,symbols.namesake ,Mice ,Optics ,Transition point ,0103 physical sciences ,Transmittance ,Animals ,Scattering, Radiation ,General Materials Science ,Ballistic photon ,Computer Science::Information Theory ,Physics ,business.industry ,General Engineering ,Brain ,General Chemistry ,021001 nanoscience & nanotechnology ,Vortex ,Optical phenomena ,symbols ,Laguerre polynomials ,0210 nano-technology ,business - Abstract
Light transmission of Gaussian (G) and Laguerre-Gaussian (LG) vortex beams in mouse brain tissue is investigated. Transmittance is measured with different orbital angular momentums (OAM) at various tissue thicknesses. In both ballistic and diffusive regions, transmittances of G and LG beams show no significant difference. The transition point from ballistic to diffusive region for the mouse brain tissue is determined at about 480 μm. The observed transmittances of the G and LG beams show independence on OAM modes, which may be attributed to poorly understood interference effects from brain tissue.
- Published
- 2017
134. Transmission of Polarization-Entangled Photons Through Brain Tissue
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Robert R. Alfano, Jhonny Castrillon, Behzad Khajavi, Enrique J. Galvez, and Lingyan Shi
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Physics ,Photon ,Photon entanglement ,Scattering ,Quantitative Biology::Tissues and Organs ,Physics::Medical Physics ,Quantum Physics ,Quantum entanglement ,Brain tissue ,Polarization (waves) ,Molecular physics - Abstract
We characterize the entanglement after one of two polarization-entangled photons travels through a water-based soft-matter scattering medium: brain tissue. We consider tissue samples of distinct characteristics: thickness, water content, type, treatment and healthy or affected by disease.
- Published
- 2017
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135. Characterization and discrimination of basal cell carcinoma and normal human skin tissues using resonance Raman spectroscopy
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Cheng-hui Liu, Robert R. Alfano, Hugh Beckman, Susie Boydston-White, Binlin Wu, Laura A. Sordillo, Vidyasagar Sriramoju, Chunyuan Zhang, Jason T. Smith, Lin Zhang, and Lingyan Shi
- Subjects
Chemistry ,Resonance Raman spectroscopy ,Human skin ,medicine.disease ,01 natural sciences ,Characterization (materials science) ,010309 optics ,03 medical and health sciences ,0302 clinical medicine ,Nuclear magnetic resonance ,030220 oncology & carcinogenesis ,0103 physical sciences ,medicine ,Basal cell carcinoma - Published
- 2017
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136. FUTURE SUPERCONTINUUM MICROSCOPE FOR MEDICAL AND BIOLOGICAL APPLICATIONS
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Lingyan Shi and Robert R. Alfano
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Microscope ,Materials science ,Nanotechnology ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,law.invention ,Supercontinuum ,010309 optics ,Nonlinear optical ,law ,0103 physical sciences ,0210 nano-technology ,Biomedical engineering - Abstract
A supercontinuum (SC) light microscope is proposed for linear and nonlinear optical resonance and non-resonance processes in medical and biological applications. The SC can span from 300nm to 2500nm and may be used for a variety of applications for diagnosis of cancer, wound healing, fusing tissues, stimulation of nerves for therapeutic and treatment of disease. These will be discussed.
- Published
- 2017
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137. Progressive aging changes in the optical properties of Rat brain
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Vidyasagar Sriramoju, Lingyan Shi, and Alfano, Robert
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- 2017
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138. Temporal effects of vascular endothelial growth factor and 3,5-cyclic monophosphate on blood-brain barrier solute permeability in vivo
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Min Zeng, Bingmei M. Fu, and Lingyan Shi
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medicine.medical_specialty ,Pathology ,Pia mater ,Chemistry ,Vascular permeability ,Blood–brain barrier ,Vascular endothelial growth factor ,Cellular and Molecular Neuroscience ,Vascular endothelial growth factor A ,Cerebral circulation ,chemistry.chemical_compound ,medicine.anatomical_structure ,Endocrinology ,In vivo ,Internal medicine ,medicine ,Fluorescein - Abstract
To test the hypothesis that vascular endothelial growth factor (VEGF) can transiently increase the blood-brain barrier permeability, P, as for peripheral microvessels and that the elevation of 3,5-cyclic monophosphate (cAMP) levels can inhibit the VEGF-induced acute hyperpermeability, we employed multiphoton microscopy to quantify the cerebral microvessel permeability P to various-sized solutes under VEGF and cAMP treatments. The cerebral microcirculation was observed through a section of frontoparietal bone thinned with a microgrinder. Fluorescein (MW 376Da), fluorescein isothioyanate-dextran-20k (FITC-Dex-20k), FITC-Dex-70k, or Alexa Fluor 488-IgG in 1% bovine serum albumin mammalian Ringer's solution was injected into the cerebral circulation via the ipsilateral carotid artery with a syringe pump. Simultaneously, temporal images were collected from the brain parenchyma ∼100-200 μm below the pia mater. P was determined from the rate of tissue solute accumulation around individual microvessels. Exposure to 1 nM VEGF transiently increased P to 2.2, 10.5, 9.8, and 12.8 times control values, for fluorescein, Dex-20k, Dex-70k, and IgG, respectively, within 30 sec, and all returned to control levels within 2 min. After 20 min of pretreatment with 2 mM of the cAMP analog 8-bromo-cAMP, the initial increase by 1 nM VEGF was completely abolished in P of all solutes. The response pattern of P to VEGF and cAMP and the ratios of the peak to control values for rat cerebral microvessels are similar to those for rat mesenteric (peripheral) microvessels, except that the ratios are higher in P of cerebral microvessels for the intermediate and large solutes. These results imply a new approach for delivering large therapeutic agents to the brain.
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- 2014
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139. Dual-view holographic three-dimensional display using a single spatial light modulator and a directional light-guide plate composed of pixelated gratings
- Author
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Yanfeng Su, Zhijian Cai, Feng Zhou, Lingyan Shi, and Jianhong Wu
- Subjects
Physics ,Spatial light modulator ,Orientation (computer vision) ,business.industry ,Holography ,Speckle noise ,Stereoscopy ,Stereo display ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,law.invention ,010309 optics ,Optics ,law ,0103 physical sciences ,Holographic display ,Spatial frequency ,Electrical and Electronic Engineering ,business ,Engineering (miscellaneous) - Abstract
In this paper, a dual-view holographic three-dimensional (3D) display using a single spatial light modulator (SLM) and a directional light-guide plate (DLGP) is proposed and implemented. The SLM is used to load the phase-only hologram calculated from two different 3D scenes for optical holographic reconstruction, and the DLGP composed of pixelated gratings with different periods and orientation angles is employed to guide the reconstructed images into two completely separated viewing zones, where different reconstructed perspectives in each viewing zone will form a stereoscopic 3D image. Furthermore, an experimental verification system for the proposed dual-view holographic 3D display is constructed, and the experimental results demonstrate that the proposed system can successfully present different 3D images in the left and right viewing zones simultaneously, verifying the feasibility of the proposed dual-view holographic 3D display.
- Published
- 2019
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140. Photon Entanglement Through Brain Tissue
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Robert R. Alfano, Enrique J. Galvez, and Lingyan Shi
- Subjects
Physics ,Photons ,Multidisciplinary ,Photon ,Scattering ,Neurosciences ,Kidney metabolism ,Brain ,Quantum entanglement ,Quantum Physics ,Polarization (waves) ,Kidney ,01 natural sciences ,Article ,Rats ,010309 optics ,Photon entanglement ,Quantum mechanics ,0103 physical sciences ,Animals ,010306 general physics ,Quantum ,Tomography ,Coherence (physics) - Abstract
Photon entanglement, the cornerstone of quantum correlations, provides a level of coherence that is not present in classical correlations. Harnessing it by study of its passage through organic matter may offer new possibilities for medical diagnosis technique. In this work, we study the preservation of photon entanglement in polarization, created by spontaneous parametric down-conversion, after one entangled photon propagates through multiphoton-scattering brain tissue slices with different thickness. The Tangle-Entropy (TS) plots show the strong preservation of entanglement of photons propagating in brain tissue. By spatially filtering the ballistic scattering of an entangled photon, we find that its polarization entanglement is preserved and non-locally correlated with its twin in the TS plots. The degree of entanglement correlates better with structure and water content than with sample thickness.
- Published
- 2016
141. An optical window for deep brain imaging
- Author
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Lingyan Shi, Adrián Rodríguez-Contreras, Robert R. Alfano, and Laura A. Sordillo
- Subjects
Optics ,Materials science ,Neuroimaging ,business.industry ,Window (computing) ,business - Published
- 2016
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142. Directional spatial frequency analysis of lipid distribution in atherosclerotic plaque
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Stewart Russell, Lingyan Shi, Clyde Korn, Robert R. Alfano, and Eric Reese
- Subjects
Cholesterol ,business.industry ,Reverse cholesterol transport ,Laser Speckle Imaging ,01 natural sciences ,030218 nuclear medicine & medical imaging ,010309 optics ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine.anatomical_structure ,Optics ,chemistry ,Lipid droplet ,0103 physical sciences ,medicine ,Distribution (pharmacology) ,Spatial frequency ,Spatial frequency analysis ,business ,Biomedical engineering ,Artery - Abstract
Atherosclerosis is characterized by the growth of fibrous plaques due to the retention of cholesterol and lipids within the artery wall, which can lead to vessel occlusion and cardiac events. One way to evaluate arterial disease is to quantify the amount of lipid present in these plaques, since a higher disease burden is characterized by a higher concentration of lipid. Although therapeutic stimulation of reverse cholesterol transport to reduce cholesterol deposits in plaque has not produced significant results, this may be due to current image analysis methods which use averaging techniques to calculate the total amount of lipid in the plaque without regard to spatial distribution, thereby discarding information that may have significance in marking response to therapy. Here we use Directional Fourier Spatial Frequency (DFSF) analysis to generate a characteristic spatial frequency spectrum for atherosclerotic plaques from C57 Black 6 mice both treated and untreated with a cholesterol scavenging nanoparticle. We then use the Cauchy product of these spectra to classify the images with a support vector machine (SVM). Our results indicate that treated plaque can be distinguished from untreated plaque using this method, where no difference is seen using the spatial averaging method. This work has the potential to increase the effectiveness of current in-vivo methods of plaque detection that also use averaging methods, such as laser speckle imaging and Raman spectroscopy.
- Published
- 2016
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143. Fourier spatial frequency analysis for image classification: training the training set
- Author
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Robert R. Alfano, Stewart Russell, Lingyan Shi, Yigah Lhamo, and Timothy H. Johnson
- Subjects
0301 basic medicine ,Training set ,Basis (linear algebra) ,Contextual image classification ,Computer science ,business.industry ,Matched filter ,030209 endocrinology & metabolism ,Pattern recognition ,Image (mathematics) ,Support vector machine ,Set (abstract data type) ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Bounded function ,Noise (video) ,Artificial intelligence ,business - Abstract
The Directional Fourier Spatial Frequencies (DFSF) of a 2D image can identify similarity in spatial patterns within groups of related images. A Support Vector Machine (SVM) can then be used to classify images if the inter-image variance of the FSF in the training set is bounded. However, if variation in FSF increases with training set size, accuracy may decrease as the size of the training set increases. This calls for a method to identify a set of training images from among the originals that can form a vector basis for the entire class. Applying the Cauchy product method we extract the DFSF spectrum from radiographs of osteoporotic bone, and use it as a matched filter set to eliminate noise and image specific frequencies, and demonstrate that selection of a subset of superclassifiers from within a set of training images improves SVM accuracy. Central to this challenge is that the size of the search space can become computationally prohibitive for all but the smallest training sets. We are investigating methods to reduce the search space to identify an optimal subset of basis training images.
- Published
- 2016
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144. In vivo two-photon imaging measuring the blood-brain barrier permeability during early postnatal brain development in rodent
- Author
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Lingyan Shi and Adrián Rodríguez-Contreras
- Subjects
0301 basic medicine ,Chemistry ,Blood–brain barrier ,law.invention ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Two-photon excitation microscopy ,In vivo ,Confocal microscopy ,law ,Permeability (electromagnetism) ,Blood circulation ,cardiovascular system ,medicine ,Biophysics ,030217 neurology & neurosurgery ,Astrocyte ,Postnatal brain - Abstract
The blood–brain barrier (BBB) is a unique structure between the cerebral blood circulation and the delicate neural environment that is important in regulating the movement of molecules and ions involved in brain development and function. However, little is known about the physiological permeability of molecules and ions across the BBB during brain development. In this study we applied an innovative approach to examine the development of BBB properties quantitatively. Two-photon microscopy was employed to measure BBB permeability in real time in vivo. Vascular growth and specific interactions between astrocyte end feet and microvessels were studied by using a combination of IB4 histochemistry, immunohistochemistry, confocal microscopy and 3D analysis.
- Published
- 2016
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145. Optical vortex beam transmission with different OAM in scattering beads and brain tissue media
- Author
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Wubao Wang, Robert R. Alfano, Martin P. J. Lavery, Lukas Lindwasser, Lingyan Shi, and Paulo Marque
- Subjects
Latex beads ,Physics ,Angular momentum ,Spatial light modulator ,business.industry ,Scattering ,Mean free path ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Molecular physics ,010309 optics ,Optics ,0103 physical sciences ,Reflection (physics) ,Physics::Accelerator Physics ,0210 nano-technology ,business ,Optical vortex ,Gaussian beam - Abstract
Light transmission of Laguerre Gaussian (LG) vortex beams with different orbital angular momentum (OAM) values (L) in scattering beads and mouse brain tissue media were experimentally investigated for the first time in comparison with Gaussian (G) beams. The LG beams with different OAM were generated using a spatial light modulator (SLM) in reflection mode. The scattering beads media consist of various sizes and concentrations of latex beads in water solutions. The transmissions of LG and G beams through scattering beads and brain tissue media were measured with different ratios of sample thicknesses (z) to scattering mean free path (l s ) of the turbid media, z/l s . The results indicate that within the ballistic region where z/l s is small, the LG and G beams show no significant difference, while in the diffusive region where z/l s is higher, the vortex beams show higher transmission than G beams. In the diffusive region, the LG beams with higher L values show higher transmission than the beams with lower L values due to the eigen channels in the media. The transition points from the ballistic to diffusive regions for different scattering beads and brain tissue media were studied.
- Published
- 2016
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146. Optical pathology study of human abdominal aorta tissues using confocal micro resonance Raman spectroscopy
- Author
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Cheng-hui Liu, Robert R. Alfano, Vincent P. Tomaselli, Laura A. Sordillo, Peter P. Sordillo, Arel Weisberg, Lingyan Shi, Susie Boydston-White, and Wubao Wang
- Subjects
Pathology ,medicine.medical_specialty ,Chemistry ,Confocal ,Abdominal aorta ,Resonance Raman spectroscopy ,Soft tissue ,01 natural sciences ,010309 optics ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,medicine.anatomical_structure ,In vivo ,030220 oncology & carcinogenesis ,medicine.artery ,0103 physical sciences ,medicine ,symbols ,Abdomen ,Histopathology ,Raman spectroscopy - Abstract
Resonance Raman (RR) spectroscopic technique has a high potential for label-free and in-situ detection of biomedical lesions in vivo. This study evaluates the ability of RR spectroscopy method as an optical histopathology tool to detect the atherosclerotic plaque states of abdominal aorta in vitro. This part demonstrates the RR spectral molecular fingerprint features from different sites of the atherosclerotic abdominal aortic wall tissues. Total 57 sites of five pieces aortic samples in intimal and adventitial wall from an autopsy specimen were examined using confocal micro Raman system of WITec 300R with excitation wavelength of 532nm. The preliminary RR spectral biomarkers of molecular fingerprints indicated that typical calcified atherosclerotic plaque (RR peak at 964cm-1) tissue; fibrolipid plaque (RR peaks at 1007, 1161, 1517 and 2888cm-1) tissue, lipid pool with the fatty precipitation cholesterol) with collagen type I (RR peaks at 864, 1452, 1658, 2888 and 2948cm-1) in the soft tissue were observed and investigated.
- Published
- 2016
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147. An in vivo Two-Photon Fluorescence Approach to Quantify the Blood-Brain Barrier Permeability for Drug Delivery in Brain
- Author
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Adrián Rodríguez-Contreras, Bingmei M. Fu, and Lingyan Shi
- Subjects
In vivo ,Chemistry ,Drug delivery ,Biophysics ,Blood brain barrier permeability ,Two photon fluorescence - Published
- 2016
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148. Terahertz spectroscopy of brain tissue from a mouse model of Alzheimer’s disease
- Author
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Lingyan Shi, Pavel Shumyatsky, Adrián Rodríguez-Contreras, and Robert R. Alfano
- Subjects
Pathology ,medicine.medical_specialty ,Biomedical Engineering ,Normal tissue ,Brain tissue ,01 natural sciences ,010309 optics ,Biomaterials ,Mice ,Nuclear magnetic resonance ,Neuroimaging ,Research Papers: General ,Alzheimer Disease ,0103 physical sciences ,medicine ,Animals ,Terahertz Spectroscopy ,Chemistry ,010401 analytical chemistry ,Tryptophan ,Brain ,Equipment Design ,medicine.disease ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,Biomarker (cell) ,Terahertz spectroscopy and technology ,Disease Models, Animal ,Refractometry ,Free tryptophan ,Alzheimer's disease - Abstract
The terahertz (THz) absorption and index of refraction of brain tissues from a mouse model of Alzheimer’s disease (AD) and a control wild-type (normal) mouse were compared using THz time-domain spectroscopy (THz-TDS). Three dominating absorption peaks associated to torsional–vibrational modes were observed in AD tissue, at about 1.44, 1.8, and 2.114 THz, closer to the peaks of free tryptophan molecules than in normal tissue. A possible reason is that there is more free tryptophan in AD brain tissue, while in normal brain tissue more tryptophan is attached to other molecules. Our study suggests that THz-absorption modes may be used as an AD biomarker fingerprint in brain, and that THz-TDS is a promising technique for early diagnosis of AD.
- Published
- 2016
149. Invited Article: Molecular biomarkers characterization for human brain glioma grading using visible resonance Raman spectroscopy
- Author
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Cheng-hui Liu, Yan Zhou, Mingqian Zhang, Chunyuan Zhang, Binlin Wu, Shenglin Li, Robert R. Alfano, Hong Chen, Qijun Liang, Ke Zhu, Gangge Cheng, Lingyan Shi, and Xinguang Yu
- Subjects
lcsh:Applied optics. Photonics ,Computer Networks and Communications ,Brain tumor ,lcsh:TA1501-1820 ,Phosphatidic acid ,Human brain ,Nicotinamide adenine dinucleotide ,medicine.disease ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,Lactic acid ,010309 optics ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine.anatomical_structure ,chemistry ,030220 oncology & carcinogenesis ,Glioma ,0103 physical sciences ,Cancer research ,medicine ,Warburg hypothesis ,Adenosine triphosphate - Abstract
The accurate identification of the human brain tumor boundary and the complete resection of the tumor are two essential factors for the removal of the glioma tumor in brain surgery. We present a visible resonance Raman (VRR) spectroscopy technique for differentiating the brain tumor margin and glioma grading. Eighty-seven VRR spectra from twenty-one human brain specimens of four types of brain tissues, including the control, glioma grade II, III, and IV tissues, were observed. This study focuses on observing the characteristics of new biomarkers and their changes in the four types of brain tissue. We found that two new RR peaks at 1129 cm−1 and 1338 cm−1 associated with molecular vibrational bonds in four types of brain tissues are significantly different in peak intensities of VRR spectra. These two resonance enhanced peaks may arise from lactic acid/phosphatidic acid and adenosine triphosphate (ATP)/nicotinamide adenine dinucleotide, respectively. We found that lactic acid and ATP concentrations vary with glioma gratings. The higher the grade of malignancy, the more the increase in lactic acid and ATP concentrations. These two RR peaks may be considered as new molecular biomarkers and used to evaluate glioma grades and identify the margin of gliomas from the control tissues. The metabolic process of lactic acid and ATP in glioma cells based on the VRR spectral changes may reveal the Warburg hypothesis.
- Published
- 2018
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150. Binocular holographic three-dimensional display using a single spatial light modulator and a grating
- Author
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Feng Zhou, Zhijian Cai, Lingyan Shi, Yanfeng Su, Quan Liu, and Jianhong Wu
- Subjects
Physics ,Spatial light modulator ,business.industry ,3D reconstruction ,Holography ,02 engineering and technology ,Grating ,021001 nanoscience & nanotechnology ,01 natural sciences ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,law.invention ,010309 optics ,Optics ,law ,0103 physical sciences ,Holographic display ,Computer Vision and Pattern Recognition ,0210 nano-technology ,business ,Depth perception ,Parallax ,Fresnel diffraction - Abstract
In this paper, a binocular holographic three-dimensional (3D) display system combining a single spatial light modulator (SLM) and a grating is proposed and implemented. A synthetic phase-only hologram of the left and right 3D perspective images of an object is calculated by the layer-based Fresnel diffraction method according to the depth information, and uploaded onto the SLM for holographic 3D reconstruction with correct depth cues. The grating is designed and fabricated to guide the reconstructed left and right 3D perspective images to the corresponding eyes. Optical experiments demonstrate that the proposed system can successfully present binocular holographic 3D images with both the accommodation effect and binocular parallax, which enables observation free of the accommodation-vergence conflict and visual fatigue problem.
- Published
- 2018
- Full Text
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