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We present the first cosmology results from large-scale structure in the Dark Energy Survey (DES) spanning 5000 deg$^2$. We perform an analysis combining three two-point correlation functions (3$\times$2pt): (i) cosmic shear using 100 million source galaxies, (ii) galaxy clustering, and (iii) the cross-correlation of source galaxy shear with lens galaxy positions. The analysis was designed to mitigate confirmation or observer bias; we describe specific changes made to the lens galaxy sample following unblinding of the results. We model the data within the flat $\Lambda$CDM and $w$CDM cosmological models. We find consistent cosmological results between the three two-point correlation functions; their combination yields clustering amplitude $S_8=0.776^{+0.017}_{-0.017}$ and matter density $\Omega_{\mathrm{m}} = 0.339^{+0.032}_{-0.031}$ in $\Lambda$CDM, mean with 68% confidence limits; $S_8=0.775^{+0.026}_{-0.024}$, $\Omega_{\mathrm{m}} = 0.352^{+0.035}_{-0.041}$, and dark energy equation-of-state parameter $w=-0.98^{+0.32}_{-0.20}$ in $w$CDM. This combination of DES data is consistent with the prediction of the model favored by the Planck 2018 cosmic microwave background (CMB) primary anisotropy data, which is quantified with a probability-to-exceed $p=0.13$ to $0.48$. When combining DES 3$\times$2pt data with available baryon acoustic oscillation, redshift-space distortion, and type Ia supernovae data, we find $p=0.34$. Combining all of these data sets with Planck CMB lensing yields joint parameter constraints of $S_8 = 0.812^{+0.008}_{-0.008}$, $\Omega_{\mathrm{m}} = 0.306^{+0.004}_{-0.005}$, $h=0.680^{+0.004}_{-0.003}$, and $\sum m_{\nu}<0.13 \;\mathrm{eV\; (95\% \;CL)}$ in $\Lambda$CDM; $S_8 = 0.812^{+0.008}_{-0.008}$, $\Omega_{\mathrm{m}} = 0.302^{+0.006}_{-0.006}$, $h=0.687^{+0.006}_{-0.007}$, and $w=-1.031^{+0.030}_{-0.027}$ in $w$CDM. (abridged), Comment: See https://www.darkenergysurvey.org/des-year-3-cosmology-results-papers/ for the full DES Y3 3x2pt cosmology release. Matches version accepted in PRD

We present and characterize the galaxy-galaxy lensing signal measured using the first three years of data from the Dark Energy Survey (DES Y3) covering 4132 deg$^2$. These galaxy-galaxy measurements are used in the DES Y3 3$\times$2pt cosmological analysis, which combines weak lensing and galaxy clustering information. We use two lens samples: a magnitude-limited sample and the redMaGic sample, which span the redshift range $\sim 0.2-1$ with 10.7 M and 2.6 M galaxies respectively. For the source catalog, we use the Metacalibration shape sample, consisting of $\simeq$100 M galaxies separated into 4 tomographic bins. Our galaxy-galaxy lensing estimator is the mean tangential shear, for which we obtain a total S/N of $\sim$148 for MagLim ($\sim$120 for redMaGic), and $\sim$67 ($\sim$55) after applying the scale cuts of 6 Mpc/$h$. Thus we reach percent-level statistical precision, which requires that our modeling and systematic-error control be of comparable accuracy. The tangential shear model used in the 3$\times$2pt cosmological analysis includes lens magnification, a five-parameter intrinsic alignment model (TATT), marginalization over a point-mass to remove information from small scales and a linear galaxy bias model validated with higher-order terms. We explore the impact of these choices on the tangential shear observable and study the significance of effects not included in our model, such as reduced shear, source magnification and source clustering. We also test the robustness of our measurements to various observational and systematics effects, such as the impact of observing conditions, lens-source clustering, random-point subtraction, scale-dependent Metacalibration responses, PSF residuals, and B-modes., Comment: 33 pages, 18 figures, accepted by PRD

This work, together with its companion paper, Secco and Samuroff et al. (2021), presents the Dark Energy Survey Year 3 cosmic shear measurements and cosmological constraints based on an analysis of over 100 million source galaxies. With the data spanning 4143 deg$^2$ on the sky, divided into four redshift bins, we produce the highest significance measurement of cosmic shear to date, with a signal-to-noise of 40. We conduct a blind analysis in the context of the $\Lambda$CDM model and find a 3% constraint of the clustering amplitude, $S_8\equiv \sigma_8 (\Omega_{\rm m}/0.3)^{0.5} = 0.759^{+0.025}_{-0.023}$. A $\Lambda$CDM-Optimized analysis, which safely includes smaller scale information, yields a 2% precision measurement of $S_8= 0.772^{+0.018}_{-0.017}$ that is consistent with the fiducial case. The two low-redshift measurements are statistically consistent with the Planck Cosmic Microwave Background result, however, both recovered $S_8$ values are lower than the high-redshift prediction by $2.3\sigma$ and $2.1\sigma$ ($p$-values of 0.02 and 0.05), respectively. The measurements are shown to be internally consistent across redshift bins, angular scales and correlation functions. The analysis is demonstrated to be robust to calibration systematics, with the $S_8$ posterior consistent when varying the choice of redshift calibration sample, the modeling of redshift uncertainty and methodology. Similarly, we find that the corrections included to account for the blending of galaxies shifts our best-fit $S_8$ by $0.5\sigma$ without incurring a substantial increase in uncertainty. We examine the limiting factors for the precision of the cosmological constraints and find observational systematics to be subdominant to the modeling of astrophysics. Specifically, we identify the uncertainties in modeling baryonic effects and intrinsic alignments as the limiting systematics., Comment: 42 pages, 19 figures

This paper details the modeling pipeline and validates the baseline analysis choices of the DES Year 3 joint analysis of galaxy clustering and weak lensing (a so-called "3$\times$2pt" analysis). These analysis choices include the specific combination of cosmological probes, priors on cosmological and systematics parameters, model parameterizations for systematic effects and related approximations, and angular scales where the model assumptions are validated. We run a large number of simulated likelihood analyses using synthetic data vectors to test the robustness of our baseline analysis. We demonstrate that the DES Year 3 modeling pipeline, including the calibrated scale cuts, is sufficiently accurate relative to the constraining power of the DES Year 3 analyses. Our systematics mitigation strategy accounts for astrophysical systematics, such as galaxy bias, intrinsic alignments, source and lens magnification, baryonic effects, and source clustering, as well as for uncertainties in modeling the matter power spectrum, reduced shear, and estimator effects. We further demonstrate excellent agreement between two independently-developed modeling pipelines, and thus rule out any residual uncertainties due to the numerical implementation., Comment: part of the DES year-3 combined 2-point function analysis; see https://www.darkenergysurvey.org/des-year-3-cosmology-results-papers/ for the full DES Y3 cosmology release

This work and its companion paper, Amon et al. (2021), present cosmic shear measurements and cosmological constraints from over 100 million source galaxies in the Dark Energy Survey (DES) Year 3 data. We constrain the lensing amplitude parameter $S_8\equiv\sigma_8\sqrt{\Omega_\textrm{m}/0.3}$ at the 3% level in $\Lambda$CDM: $S_8=0.759^{+0.025}_{-0.023}$ (68% CL). Our constraint is at the 2% level when using angular scale cuts that are optimized for the $\Lambda$CDM analysis: $S_8=0.772^{+0.018}_{-0.017}$ (68% CL). With cosmic shear alone, we find no statistically significant constraint on the dark energy equation-of-state parameter at our present statistical power. We carry out our analysis blind, and compare our measurement with constraints from two other contemporary weak-lensing experiments: the Kilo-Degree Survey (KiDS) and Hyper-Suprime Camera Subaru Strategic Program (HSC). We additionally quantify the agreement between our data and external constraints from the Cosmic Microwave Background (CMB). Our DES Y3 result under the assumption of $\Lambda$CDM is found to be in statistical agreement with Planck 2018, although favors a lower $S_8$ than the CMB-inferred value by $2.3\sigma$ (a $p$-value of 0.02). This paper explores the robustness of these cosmic shear results to modeling of intrinsic alignments, the matter power spectrum and baryonic physics. We additionally explore the statistical preference of our data for intrinsic alignment models of different complexity. The fiducial cosmic shear model is tested using synthetic data, and we report no biases greater than 0.3$\sigma$ in the plane of $S_8\times\Omega_\textrm{m}$ caused by uncertainties in the theoretical models., Comment: Minor modifications, results unchanged. Matches version published in PRD. DES Y3 cosmology data products in https://des.ncsa.illinois.edu/releases/y3a2

Background SAMtools and BCFtools are widely used programs for processing and analysing high-throughput sequencing data. Findings The first version appeared online twelve years ago and has been maintained and further developed ever since, with many new features and improvements added over the years. The SAMtools and BCFtools packages represent a unique collection of tools that have been used in numerous other software projects and countless genomic pipelines. Conclusion Both SAMtools and BCFtools are freely available on GitHub under the permissive MIT licence, free for both non-commercial and commercial use. Both packages have been installed over a million times via Bioconda. The source code and documentation are available from http://www.htslib.org.

Quantifying tensions -- inconsistencies amongst measurements of cosmological parameters by different experiments -- has emerged as a crucial part of modern cosmological data analysis. Statistically-significant tensions between two experiments or cosmological probes may indicate new physics extending beyond the standard cosmological model and need to be promptly identified. We apply several tension estimators proposed in the literature to the Dark Energy Survey (DES) large-scale structure measurement and Planck cosmic microwave background data. We first evaluate the responsiveness of these metrics to an input tension artificially introduced between the two, using synthetic DES data. We then apply the metrics to the comparison of Planck and actual DES Year 1 data. We find that the parameter differences, Eigentension, and Suspiciousness metrics all yield similar results on both simulated and real data, while the Bayes ratio is inconsistent with the rest due to its dependence on the prior volume. Using these metrics, we calculate the tension between DES Year 1 $3\times 2$pt and Planck, finding the surveys to be in $\sim 2.3\sigma$ tension under the $\Lambda$CDM paradigm. This suite of metrics provides a toolset for robustly testing tensions in the DES Year 3 data and beyond., Comment: 17 pages, 10 figures. Accepted in MNRAS. See https://www.darkenergysurvey.org/des-year-3-cosmology-results-papers/ for the full DES Y3 cosmology release

Focused-ion-beam machining is a powerful process to fabricate complex nanostructures, often through a sacrificial mask that enables milling beyond the resolution limit of the ion beam. However, current understanding of this super-resolution effect is empirical in the spatial domain and nonexistent in the temporal domain. This article reports the primary study of this fundamental tradespace of resolution and throughput. Chromia functions well as a masking material due to its smooth, uniform, and amorphous structure. An efficient method of in-line metrology enables characterization of ion-beam focus by scanning electron microscopy. Fabrication and characterization of complex test-structures through chromia and into silica probe the response of the bilayer to a focused beam of gallium cations, demonstrating super-resolution factors of up to 6 $\pm$ 2 and improvements to volume throughput of at least factors of 42 $\pm$ 2, with uncertainties denoting 95 % coverage intervals. Tractable theory models the essential aspects of the super-resolution effect for various nanostructures. Application of the new tradespace increases the volume throughput of machining Fresnel lenses by a factor of 75, which we introduce as projection standards for optical microscopy. These results enable paradigm shifts of sacrificial masking from empirical to engineering design, and from prototyping to manufacturing.

We study a phenomenological class of models where dark matter converts to dark radiation in the low redshift epoch. This class of models, dubbed DMDR, characterizes the evolution of comoving dark matter density with two extra parameters, and may be able to help alleviate the observed discrepancies between early- and late-time probes of the universe. We investigate how the conversion affects key cosmological observables such as the CMB temperature and matter power spectra. Combining 3x2pt data from Year 1 of the Dark Energy Survey, {\it Planck}-2018 CMB temperature and polarization data, supernovae (SN) Type Ia data from Pantheon, and baryon acoustic oscillation (BAO) data from BOSS DR12, MGS and 6dFGS, we place new constraints on the amount of dark matter that has converted to dark radiation and the rate of this conversion. The fraction of the dark matter that has converted since the beginning of the universe in units of the current amount of dark matter, $\zeta$, is constrained at 68\% confidence level to be $<0.32$ for DES-Y1 3x2pt data, $<0.030$ for CMB+SN+BAO data, and $<0.037$ for the combined dataset. The probability that the DES and CMB+SN+BAO datasets are concordant increases from 4\% for the $\Lambda$CDM model to 8\% (less tension) for DMDR. The tension in $S_8 = \sigma_8 \sqrt{\Omega_{\rm m}/0.3}$ between DES-Y1 3x2pt and CMB+SN+BAO is slightly reduced from $2.3\sigma$ to $1.9\sigma$. We find no reduction in the Hubble tension when the combined data is compared to distance-ladder measurements in the DMDR model. The maximum-posterior goodness-of-fit statistics of DMDR and $\Lambda$CDM model are comparable, indicating no preference for the DMDR cosmology over $\Lambda$CDM., Comment: 23 pages, 11 figures. DES extensions group. Accepted by PRD