125 results on '"Kelley, Douglas H."'
Search Results
102. Scale-Dependent Statistical Geometry in Two-Dimensional Flow
- Author
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Merrifield, Sophia T., primary, Kelley, Douglas H., additional, and Ouellette, Nicholas T., additional
- Published
- 2010
- Full Text
- View/download PDF
103. Selection of inertial modes in spherical Couette flow
- Author
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Kelley, Douglas H., primary, Triana, Santiago Andrés, additional, Zimmerman, Daniel S., additional, and Lathrop, Daniel P., additional
- Published
- 2010
- Full Text
- View/download PDF
104. Inertial waves driven by differential rotation in a planetary geometry
- Author
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Kelley, Douglas H., primary, Triana, Santiago Andrés, additional, Zimmerman, Daniel S., additional, Tilgner, Andreas, additional, and Lathrop, Daniel P., additional
- Published
- 2007
- Full Text
- View/download PDF
105. The spatial relationships between dissipation and production rates and vortical structures in turbulent boundary and mixing layers
- Author
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Diorio, James, primary, Kelley, Douglas H., additional, and Wallace, James M., additional
- Published
- 2007
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106. Driven inertial waves in spherical Couette flow
- Author
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Kelley, Douglas H., primary, Triana, Santiago Andrés, additional, Zimmerman, Daniel S., additional, Brawn, Barbara, additional, Lathrop, Daniel P., additional, and Martin, Donald H., additional
- Published
- 2006
- Full Text
- View/download PDF
107. A real-time in vivoclearance assay for quantification of glymphatic efflux
- Author
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Plá, Virginia, Bork, Peter, Harnpramukkul, Aurakoch, Olveda, Genaro, Ladrón-de-Guevara, Antonio, Giannetto, Michael J., Hussain, Rashad, Wang, Wei, Kelley, Douglas H., Hablitz, Lauren M., and Nedergaard, Maiken
- Abstract
Glymphatic fluid transport eliminates metabolic waste from the brain including amyloid-β, yet the methodology for studying efflux remains rudimentary. Here, we develop a method to evaluate glymphatic real-time clearance. Efflux of Direct Blue 53 (DB53, also T-1824 or Evans Blue) injected into the striatum is quantified by imaging the DB53 signal in the vascular compartment, where it is retained due to its high affinity to albumin. The DB53 signal is detectable as early as 15 min after injection and the efflux kinetics are sharply reduced in mice lacking the water channel aquaporin 4 (AQP4). Pharmacokinetic modeling reveal that DB53 efflux is consistent with the existence of two efflux paths, one with fast kinetics (T1/2 = 50 min) and another with slow kinetics (T1/2 = 240 min), in wild-type mice. This in vivomethodology will aid in defining the physiological variables that drive efflux, as well as the impact of brain states or disorders on clearance kinetics.
- Published
- 2022
- Full Text
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108. Tackling key engineering challenges in liquid metal batteries : temperature and mass transport
- Author
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Ashour, Rakan F., Kelley, Douglas H., Ashour, Rakan F., and Kelley, Douglas H.
- Abstract
Thesis (Ph. D.)--University of Rochester. Materials Science Program, 2019., The liquid metal battery (LMB) has already emerged out of the lab bench and into commercial deployment for grid-scale energy storage. However, there are still various engineering challenges that need to be solved in order to improve the LMB’s ability to supply energy at lower cost. This thesis will focus on overcoming the challenges of high operating temperature and mass transport kinetic losses. To address the problem of high operating temperature, a rigorous experimental research program was undertaken. The feasibility of low and intermediate temperature electrolytes for sodium based liquid metal batteries operating at temperatures below 300oC was investigated. First, the binary NaOH, NaI electrolyte was studied by building and cycling Na|Bi LMBs at temperatures below 280oC. Side reactions leading to capacity fade were identified and their free energies were calculated. Second, the electrochemical feasibility of a novel ternary NaNH2, NaOH, NaI electrolyte for Na|PbBi LMBs was investigated using a three-electrode setup. Cycling voltammetry was used to measure an electrochemical window of 1.3V at 180oC. Thermodynamic calculations were used to determine the limiting oxidation reaction. A second three-electrode setup that employs Na in β"-Al2O3 as a reference electrode, eutectic Bi-Pb working electrodes and a Na-Bi- Pb counter electrode was used to investigate the optimal operating conditions for a Na|PbBi LMB. PbBi electrodes were discharged to a predetermined molar concentration of Na and cross-sectioned. Samples were analyzed using energy dispersive x-ray spectroscopy and scanning electron microscopy. To understand the fundamentals of mass transport in LMBs, a comprehensive experimental model was developed to investigate the flow in PbBi electrodes operating at a temperature between 160 and 180oC. Ultrasound Doppler Velocimetry (UDV) was used to measure the flow in shallow PbBi electrodes at current densities ranging from 0 to 640 mA/cm2. We identified two competi
109. A comparison of experiments and large eddy simulations of spherical Couette flow in liquid sodium
- Author
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Matsui, Hiroaki, Kelley, Douglas H., Buffett, Bruce A., Lathrop, Daniel P., 松井, 宏晃, Matsui, Hiroaki, Kelley, Douglas H., Buffett, Bruce A., Lathrop, Daniel P., and 松井, 宏晃
110. Multilayer interfacial wave dynamics in upright circular cylinders with application to liquid metal batteries
- Author
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Horstmann, Gerrit Maik, Eckert, Kerstin, Kelley, Douglas H., Herreman, Wietze, Technische Universität Dresden, and Helmholtz-Zentrum Dresden-Rossendorf
- Subjects
Physics::Fluid Dynamics ,Liquid Metal Batteries, Interfacial Waves, Metal Pad Roll Instability, Sloshing ,ddc:621.3 ,ddc:620 ,Flüssigmetallbatterien, Grenzflächenwellen, Metal Pad Roll Instabilität, Sloshing - Abstract
Liquid metal batteries are discussed today as an economic grid-scale energy storage, as required for the deployment of fluctuating renewable energies. These batteries consist of three stably stratified liquid layers: two liquid metal electrodes are separated by a thin molten salt electrolyte, this way forming an electrochemical concentration cell. The completely liquid interior, which is on the one hand very beneficial for the energy efficiency, also poses some major challenges on the other hand. Strong cell currents in combination with electromagnetic fields make liquid metal batteries highly susceptible to various kinds of magnetohydrodynamic instabilities. In particular, the so-called metal pad roll instability, which can drive uncontrollable wave motions in both interfaces, was identified as a key limiting factor for the operational safety. The metal pad roll instability is well known from conceptually similar aluminum reduction cells, but still poorly understood in the framework of liquid metal batteries. Mainly by developing analytical wave models, but also by employing numerical simulations and by setting up a newly designed wave experiment, the present thesis pursues the goal of providing a better understanding of interfacial wave dynamics and the manifestation of the metal pad roll instability in liquid metal batteries. As a main result, a three-layer formulation of standing gravity-capillary waves reveals that the pressure coupling between the two interfaces plays a crucial role in the cell stability. Three different coupling regimes, which partially involve novel types of interfacial wave instabilities, are identified and classified by two dimensionless parameters. Building on this theoretical work, the wave experiment is exploited to further investigate different metal pad roll-related wave properties. The crucial importance of the contact line dynamics is emphasized and viscous damping, which is important for the estimation of instability onsets, is discussed as a function of the layer heights. Finally, a hybrid interfacial sloshing model is formulated and equipped with recently derived two-layer damping rates to account for viscous dissipation. The model allows to study and interpret the forced wave mechanics in the wave experiment as a function of eight dimensionless parameters and can, as an additional application, be exploited to optimize mixing in orbitally shaken bioreactors. As a further key result, the sloshing model reveals the formation of novel spiral wave patterns under the effect of strong damping.
- Published
- 2020
111. Quantifying stretching and rearrangement in epithelial sheet migration
- Author
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Wolfgang Losert, Nicholas T. Ouellette, Kerstin Nordstrom, Rachel M. Lee, Douglas H. Kelley, Massachusetts Institute of Technology. Materials Processing Center, Massachusetts Institute of Technology. Department of Materials Science and Engineering, and Kelley, Douglas H.
- Subjects
Leading edge ,FOS: Physical sciences ,General Physics and Astronomy ,Motion (geometry) ,Lyapunov exponent ,01 natural sciences ,Article ,Collective migration ,03 medical and health sciences ,symbols.namesake ,Cell Behavior (q-bio.CB) ,0103 physical sciences ,Soft matter ,Physics - Biological Physics ,010306 general physics ,030304 developmental biology ,Physics ,0303 health sciences ,Deformation (mechanics) ,Cell migration ,Flow (mathematics) ,Biological Physics (physics.bio-ph) ,Chemical physics ,FOS: Biological sciences ,symbols ,Quantitative Biology - Cell Behavior - Abstract
Although understanding the collective migration of cells, such as that seen in epithelial sheets, is essential for understanding diseases such as metastatic cancer, this motion is not yet as well characterized as individual cell migration. Here we adapt quantitative metrics used to characterize the flow and deformation of soft matter to contrast different types of motion within a migrating sheet of cells. Using a Finite-Time Lyapunov Exponent (FTLE) analysis, we find that - in spite of large fluctuations - the flow field of an epithelial cell sheet is not chaotic. Stretching of a sheet of cells (i.e., positive FTLE) is localized at the leading edge of migration. By decomposing the motion of the cells into affine and non-affine components using the metric D$^{2}_{min}$, we quantify local plastic rearrangements and describe the motion of a group of cells in a novel way. We find an increase in plastic rearrangements with increasing cell densities, whereas inanimate systems tend to exhibit less non-affine rearrangements with increasing density., 21 pages, 7 figures This is an author-created, un-copyedited version of an article accepted for publication in the New Journal of Physics. IOP Publishing Ltd is not responsible for any errors or omissions in this version of the manuscript or any version derived from it. The Version of Record is available online at doi:10.1088/1367-2630/15/2/025036
- Published
- 2013
112. Emergent dynamics of laboratory insect swarms
- Author
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Douglas H. Kelley, Nicholas T. Ouellette, Massachusetts Institute of Technology. Department of Materials Science and Engineering, and Kelley, Douglas H.
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Male ,Chironomus riparius ,Multidisciplinary ,Behavior, Animal ,Ecology ,ved/biology ,ved/biology.organism_classification_rank.species ,Dynamics (mechanics) ,Biology ,Article ,Chironomidae ,Animals ,Scale (map) ,Biological system ,Statistical evidence - Abstract
Collective animal behaviour occurs at nearly every biological size scale, from single-celled organisms to the largest animals on earth. It has long been known that models with simple interaction rules can reproduce qualitative features of this complex behaviour. But determining whether these models accurately capture the biology requires data from real animals, which has historically been difficult to obtain. Here, we report three-dimensional, time-resolved measurements of the positions, velocities, and accelerations of individual insects in laboratory swarms of the midge Chironomus riparius. Even though the swarms do not show an overall polarisation, we find statistical evidence for local clusters of correlated motion. We also show that the swarms display an effective large-scale potential that keeps individuals bound together, and we characterize the shape of this potential. Our results provide quantitative data against which the emergent characteristics of animal aggregation models can be benchmarked., United States. Army Research Office (Grant W911Nf-12-1-0517)
- Published
- 2012
113. Restoration of cervical lymphatic vessel function in aging rescues cerebrospinal fluid drainage.
- Author
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Du T, Raghunandan A, Mestre H, Plá V, Liu G, Ladrón-de-Guevara A, Newbold E, Tobin P, Gahn-Martinez D, Pattanayak S, Huang Q, Peng W, Nedergaard M, and Kelley DH
- Subjects
- Animals, Mice, Lymphatic Vessels physiology, Lymphatic Vessels metabolism, Cerebrospinal Fluid metabolism, Cerebrospinal Fluid physiology, Aging physiology
- Abstract
Cervical lymphatic vessels (cLVs) have been shown to drain solutes and cerebrospinal fluid (CSF) from the brain. However, their hydrodynamical properties have never been evaluated in vivo. Here, we developed two-photon optical imaging with particle tracking in vivo of CSF tracers (2P-OPTIC) in superficial and deep cLVs of mice, characterizing their flow and showing that the major driver is intrinsic pumping by contraction of the lymphatic vessel wall. Moreover, contraction frequency and flow velocity were reduced in aged mice, which coincided with a reduction in smooth muscle actin expression. Slowed flow in aged mice was rescued using topical application of prostaglandin F
2α , a prostanoid that increases smooth muscle contractility, which restored lymphatic function in aged mice and enhanced central nervous system clearance. We show that cLVs are important regulators of CSF drainage and that restoring their function is an effective therapy for improving clearance in aging., (© 2024. The Author(s), under exclusive licence to Springer Nature America, Inc.)- Published
- 2024
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114. Hydraulic resistance of three-dimensional pial perivascular spaces in the brain.
- Author
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Boster KAS, Sun J, Shang JK, Kelley DH, and Thomas JH
- Subjects
- Animals, Mice, Hydrodynamics, Kinetics, Brain blood supply, Imaging, Three-Dimensional methods
- Abstract
Background: Perivascular spaces (PVSs) carry cerebrospinal fluid (CSF) around the brain, facilitating healthy waste clearance. Measuring those flows in vivo is difficult, and often impossible, because PVSs are small, so accurate modeling is essential for understanding brain clearance. The most important parameter for modeling flow in a PVS is its hydraulic resistance, defined as the ratio of pressure drop to volume flow rate, which depends on its size and shape. In particular, the local resistance per unit length varies along a PVS and depends on variations in the local cross section., Methods: Using segmented, three-dimensional images of pial PVSs in mice, we performed fluid dynamical simulations to calculate the resistance per unit length. We applied extended lubrication theory to elucidate the difference between the calculated resistance and the expected resistance assuming a uniform flow. We tested four different approximation methods, and a novel correction factor to determine how to accurately estimate resistance per unit length with low computational cost. To assess the impact of assuming unidirectional flow, we also considered a circular duct whose cross-sectional area varied sinusoidally along its length., Results: We found that modeling a PVS as a series of short ducts with uniform flow, and numerically solving for the flow in each, yields good resistance estimates at low cost. If the second derivative of area with respect to axial location is less than 2, error is typically less than 15%, and can be reduced further with our correction factor. To make estimates with even lower cost, we found that instead of solving for the resistance numerically, the well-known resistance of a circular duct could be scaled by a shape factor. As long as the aspect ratio of the cross section was less than 0.7, the additional error was less than 10%., Conclusions: Neglecting off-axis velocity components underestimates the average resistance, but the error can be reduced with a simple correction factor. These results could increase the accuracy of future models of brain-wide and local CSF flow, enabling better prediction of clearance, for example, as it varies with age, brain state, and pathological conditions., (© 2024. The Author(s).)
- Published
- 2024
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- View/download PDF
115. Potentiating glymphatic drainage minimizes post-traumatic cerebral oedema.
- Author
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Hussain R, Tithof J, Wang W, Cheetham-West A, Song W, Peng W, Sigurdsson B, Kim D, Sun Q, Peng S, Plá V, Kelley DH, Hirase H, Castorena-Gonzalez JA, Weikop P, Goldman SA, Davis MJ, and Nedergaard M
- Subjects
- Animals, Mice, Adrenergic Antagonists pharmacology, Adrenergic Antagonists therapeutic use, Disease Models, Animal, Inflammation complications, Inflammation drug therapy, Inflammation metabolism, Inflammation prevention & control, Lymphatic Vessels metabolism, Phosphorylation, Receptors, Adrenergic metabolism, Brain Edema complications, Brain Edema drug therapy, Brain Edema metabolism, Brain Edema prevention & control, Brain Injuries, Traumatic complications, Brain Injuries, Traumatic drug therapy, Brain Injuries, Traumatic metabolism, Glymphatic System drug effects, Glymphatic System metabolism, Norepinephrine metabolism
- Abstract
Cerebral oedema is associated with morbidity and mortality after traumatic brain injury (TBI)
1 . Noradrenaline levels are increased after TBI2-4 , and the amplitude of the increase in noradrenaline predicts both the extent of injury5 and the likelihood of mortality6 . Glymphatic impairment is both a feature of and a contributor to brain injury7,8 , but its relationship with the injury-associated surge in noradrenaline is unclear. Here we report that acute post-traumatic oedema results from a suppression of glymphatic and lymphatic fluid flow that occurs in response to excessive systemic release of noradrenaline. This post-TBI adrenergic storm was associated with reduced contractility of cervical lymphatic vessels, consistent with diminished return of glymphatic and lymphatic fluid to the systemic circulation. Accordingly, pan-adrenergic receptor inhibition normalized central venous pressure and partly restored glymphatic and cervical lymphatic flow in a mouse model of TBI, and these actions led to substantially reduced brain oedema and improved functional outcomes. Furthermore, post-traumatic inhibition of adrenergic signalling boosted lymphatic export of cellular debris from the traumatic lesion, substantially reducing secondary inflammation and accumulation of phosphorylated tau. These observations suggest that targeting the noradrenergic control of central glymphatic flow may offer a therapeutic approach for treating acute TBI., (© 2023. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2023
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116. Hydraulic resistance of three-dimensional pial perivascular spaces in the brain.
- Author
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Boster KAS, Sun J, Shang JK, Kelley DH, and Thomas JH
- Abstract
Background: Perivascular spaces (PVSs) carry cerebrospinal fluid (CSF) around the brain, facilitating healthy waste clearance. Measuring those flows in vivo is difficult, and often impossible, because PVSs are small, so accurate modeling is essential for understanding brain clearance. The most important parameter for modeling flow in a PVS is its hydraulic resistance, defined as the ratio of pressure drop to volume flow rate, which depends on its size and shape. In particular, the local resistance per unit length varies along a PVS and depends on variations in the local cross section., Methods: Using segmented, three-dimensional images of pial PVSs in mice, we performed fluid dynamical simulations to calculate the resistance per unit length. We applied extended lubrication theory to elucidate the difference between the calculated resistance and the expected resistance assuming a uniform flow. We tested four different approximation methods, and a novel correction factor to determine how to accurately estimate resistance per unit length with low computational cost. To assess the impact of assuming unidirectional flow, we also considered a circular duct whose cross-sectional area varied sinusoidally along its length., Results: We found that modeling a PVS as a series of short ducts with uniform flow, and numerically solving for the flow in each, yields good resistance estimates at low cost. If the second derivative of area with respect to axial location is less than 2, error is typically less than 15%, and can be reduced further with our correction factor. To make estimates with even lower cost, we found that instead of solving for the resistance numerically, the well-known resistance of a circular duct could be scaled by a shape factor. As long as the aspect ratio of the cross section was less than 0.7, the additional error was less than 10%., Conclusions: Neglecting off-axis velocity components underestimates the average resistance, but the error can be reduced with a simple correction factor. These results could increase the accuracy of future models of brain-wide and local CSF flow, enabling better prediction of clearance, for example, as it varies with age, brain state, and pathological conditions., Competing Interests: Competing interests The authors declare that they have no competing interests.
- Published
- 2023
- Full Text
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117. Image Analysis Techniques for In Vivo Quantification of Cerebrospinal Fluid Flow.
- Author
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Kim D, Gan Y, Nedergaard M, Kelley DH, and Tithof J
- Abstract
Over the last decade, there has been a tremendously increased interest in understanding the neurophysiology of cerebrospinal fluid (CSF) flow, which plays a crucial role in clearing metabolic waste from the brain. This growing interest was largely initiated by two significant discoveries: the glymphatic system (a pathway for solute exchange between interstitial fluid deep within the brain and the CSF surrounding the brain) and meningeal lymphatic vessels (lymphatic vessels in the layer of tissue surrounding the brain that drain CSF). These two CSF systems work in unison, and their disruption has been implicated in several neurological disorders including Alzheimer's disease, stoke, and traumatic brain injury. Here, we present experimental techniques for in vivo quantification of CSF flow via direct imaging of fluorescent microspheres injected into the CSF. We discuss detailed image processing methods, including registration and masking of stagnant particles, to improve the quality of measurements. We provide guidance for quantifying CSF flow through particle tracking and offer tips for optimizing the process. Additionally, we describe techniques for measuring changes in arterial diameter, which is an hypothesized CSF pumping mechanism. Finally, we outline how these same techniques can be applied to cervical lymphatic vessels, which collect fluid downstream from meningeal lymphatic vessels. We anticipate that these fluid mechanical techniques will prove valuable for future quantitative studies aimed at understanding mechanisms of CSF transport and disruption, as well as for other complex biophysical systems.
- Published
- 2023
- Full Text
- View/download PDF
118. Sizes and shapes of perivascular spaces surrounding murine pial arteries.
- Author
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Raicevic N, Forer JM, Ladrón-de-Guevara A, Du T, Nedergaard M, Kelley DH, and Boster K
- Subjects
- Mice, Animals, Arteries, Algorithms, Biological Transport, Magnetic Resonance Imaging methods, Brain blood supply, Glymphatic System
- Abstract
Background: Flow of cerebrospinal fluid (CSF) through brain perivascular spaces (PVSs) is essential for the clearance of interstitial metabolic waste products whose accumulation and aggregation is a key mechanism of pathogenesis in many diseases. The PVS geometry has important implications for CSF flow as it affects CSF and solute transport rates. Thus, the size and shape of the perivascular spaces are essential parameters for models of CSF transport in the brain and require accurate quantification., Methods: We segmented two-photon images of pial (surface) PVSs and the adjacent arteries and characterized their sizes and shapes of cross sections from 14 PVS segments in 9 mice. Based on the analysis, we propose an idealized model that approximates the cross-sectional size and shape of pial PVSs, closely matching their area ratios and hydraulic resistances., Results: The ratio of PVS-to-vessel area varies widely across the cross sections analyzed. The hydraulic resistance per unit length of the PVS scales with the PVS cross-sectional area, and we found a power-law fit that predicts resistance as a function of the area. Three idealized geometric models were compared to PVSs imaged in vivo, and their accuracy in reproducing hydraulic resistances and PVS-to-vessel area ratios were evaluated. The area ratio was obtained across different cross sections, and we found that the distribution peaks for the original PVS and its closest idealized fit (polynomial fit) were 1.12 and 1.21, respectively. The peak of the hydraulic resistance distribution is [Formula: see text] Pa s/m[Formula: see text] and [Formula: see text] Pa s/m[Formula: see text] for the segmentation and its closest idealized fit, respectively., Conclusions: PVS hydraulic resistance can be reasonably predicted as a function of the PVS area. The proposed polynomial-based fit most closely captures the shape of the PVS with respect to area ratio and hydraulic resistance. Idealized PVS shapes are convenient for modeling, which can be used to better understand how anatomical variations affect clearance and drug transport., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
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119. Glymphatic influx and clearance are accelerated by neurovascular coupling.
- Author
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Holstein-Rønsbo S, Gan Y, Giannetto MJ, Rasmussen MK, Sigurdsson B, Beinlich FRM, Rose L, Untiet V, Hablitz LM, Kelley DH, and Nedergaard M
- Subjects
- Mice, Animals, Hemodynamics, Brain metabolism, Neurovascular Coupling, Hyperemia metabolism, Glymphatic System metabolism
- Abstract
Functional hyperemia, also known as neurovascular coupling, is a phenomenon that occurs when neural activity increases local cerebral blood flow. Because all biological activity produces metabolic waste, we here sought to investigate the relationship between functional hyperemia and waste clearance via the glymphatic system. The analysis showed that whisker stimulation increased both glymphatic influx and clearance in the mouse somatosensory cortex with a 1.6-fold increase in periarterial cerebrospinal fluid (CSF) influx velocity in the activated hemisphere. Particle tracking velocimetry revealed a direct coupling between arterial dilation/constriction and periarterial CSF flow velocity. Optogenetic manipulation of vascular smooth muscle cells enhanced glymphatic influx in the absence of neural activation. We propose that impedance pumping allows arterial pulsatility to drive CSF in the same direction as blood flow, and we present a simulation that supports this idea. Thus, functional hyperemia boosts not only the supply of metabolites but also the removal of metabolic waste., (© 2023. The Author(s), under exclusive licence to Springer Nature America, Inc.)
- Published
- 2023
- Full Text
- View/download PDF
120. Artificial intelligence velocimetry reveals in vivo flow rates, pressure gradients, and shear stresses in murine perivascular flows.
- Author
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Boster KAS, Cai S, Ladrón-de-Guevara A, Sun J, Zheng X, Du T, Thomas JH, Nedergaard M, Karniadakis GE, and Kelley DH
- Subjects
- Animals, Mice, Rheology methods, Brain, Physics, Blood Flow Velocity, Artificial Intelligence, Neural Networks, Computer
- Abstract
Quantifying the flow of cerebrospinal fluid (CSF) is crucial for understanding brain waste clearance and nutrient delivery, as well as edema in pathological conditions such as stroke. However, existing in vivo techniques are limited to sparse velocity measurements in pial perivascular spaces (PVSs) or low-resolution measurements from brain-wide imaging. Additionally, volume flow rate, pressure, and shear stress variation in PVSs are essentially impossible to measure in vivo. Here, we show that artificial intelligence velocimetry (AIV) can integrate sparse velocity measurements with physics-informed neural networks to quantify CSF flow in PVSs. With AIV, we infer three-dimensional (3D), high-resolution velocity, pressure, and shear stress. Validation comes from training with 70% of PTV measurements and demonstrating close agreement with the remaining 30%. A sensitivity analysis on the AIV inputs shows that the uncertainty in AIV inferred quantities due to uncertainties in the PVS boundary locations inherent to in vivo imaging is less than 30%, and the uncertainty from the neural net initialization is less than 1%. In PVSs of N = 4 wild-type mice we find mean flow speed 16.33 ± 11.09 µm/s, volume flow rate 2.22 ± 1.983 × 10
3 µm3 /s, axial pressure gradient ( - 2.75 ± 2.01)×10-4 Pa/µm (-2.07 ± 1.51 mmHg/m), and wall shear stress (3.00 ± 1.45)×10-3 Pa (all mean ± SE). Pressure gradients, flow rates, and resistances agree with prior predictions. AIV infers in vivo PVS flows in remarkable detail, which will improve fluid dynamic models and potentially clarify how CSF flow changes with aging, Alzheimer's disease, and small vessel disease.- Published
- 2023
- Full Text
- View/download PDF
121. Front tracking velocimetry in advection-reaction-diffusion systems.
- Author
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Nevins TD and Kelley DH
- Abstract
In advection-reaction-diffusion systems, the spreading of a reactive scalar can be significantly influenced by the flow field in which it grows. In systems with sharp boundaries between reacted and unreacted regions, motion of the reaction fronts that lie at those boundaries can quantify spreading. Here, we present an algorithm for measuring the velocity of reaction fronts in the presence of flow, expanding previous work on tracking reaction fronts without flow. The algorithm provides localized measurements of front speed and can distinguish its two components: one from chemical dynamics and another from the underlying flow. We validate that the algorithm returns the expected front velocity components in two simulations and then show that in complex experimental flows, the measured front velocity maps fronts from one time step to the next self-consistently. Finally, we observe a variation of the chemical speed with flow speed in a variety of experiments with different time scales and length scales.
- Published
- 2018
- Full Text
- View/download PDF
122. Optimal stretching in the reacting wake of a bluff body.
- Author
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Wang J, Tithof J, Nevins TD, Colón RO, and Kelley DH
- Abstract
We experimentally study spreading of the Belousov-Zhabotinsky reaction behind a bluff body in a laminar flow. Locations of reacted regions (i.e., regions with high product concentration) correlate with a moderate range of Lagrangian stretching and that range is close to the range of optimal stretching previously observed in topologically different flows [T. D. Nevins and D. H. Kelley, Phys. Rev. Lett. 117, 164502 (2016)]. The previous work found optimal stretching in a closed, vortex dominated flow, but this article uses an open flow and only a small area of appreciable vorticity. We hypothesize that optimal stretching is common in advection-reaction-diffusion systems with an excitation threshold, including excitable and bistable systems, and that the optimal range depends on reaction chemistry and not on flow shape or characteristic speed. Our results may also give insight into plankton blooms behind islands in ocean currents.
- Published
- 2017
- Full Text
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123. Front tracking for quantifying advection-reaction-diffusion.
- Author
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Nevins TD and Kelley DH
- Abstract
We present an algorithm for measuring the speed and thickness of reaction fronts, and from those quantities, the diffusivity and the reaction rate of the active chemical species. This front-tracking algorithm provides local measurements suitable for statistics and requires only a sequence of concentration fields. Though our eventual goal is front tracking in advection-reaction-diffusion, here we demonstrate the algorithm in reaction-diffusion. We test the algorithm with validation data in which front speed and thickness are prescribed, as well as simulation results in which diffusivity and reaction rate are prescribed. In all tests, measurements closely match true values. We apply the algorithm to laboratory experiments using the Belousov-Zhabotinsky reaction, producing speed, diffusivity, and reaction rate measurements that are statistically more robust than in prior studies. Finally, we use thickness measurements to quantify the concentration profile of chemical waves in the reaction.
- Published
- 2017
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124. Scale-local velocity fields from particle-tracking data.
- Author
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Kelley DH and Ouellette NT
- Published
- 2010
- Full Text
- View/download PDF
125. Driven inertial waves in spherical Couette flow.
- Author
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Kelley DH, Triana SA, Zimmerman DS, Brawn B, Lathrop DP, and Martin DH
- Published
- 2006
- Full Text
- View/download PDF
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