125 results on '"Katta S"'
Search Results
102. What Do They Mean by "Health Informatics"? Health Informations Posts Compared to Program Standards.
- Author
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Jones JF, Zhang E, Kulanthaivel A, and Katta S
- Subjects
- Humans, Curriculum, Medical Informatics
- Abstract
There is a lack of alignment between and within the competencies and skills required by health informatics (HI) related jobs and those present in academic curriculum frameworks. This study uses computational topic modeling for gap analysis of career needs vs. curriculum objectives. The seven AMIA-CAHIIM-accepted core knowledge domains were used to categorize a corpus of HI-related job postings (N = 475) from a major United States-based job posting website. Computational modeling-generated topics were created and then compared and matched to the seven core knowledge domains. The HI-defining core domain, representing the intersection of health, technology and social/behavioral sciences matched only 45.9% of job posting content. Therefore, the authors suggest that bidirectional communication between academia and industry is needed in order to better align educational objectives to the demands of the job market.
- Published
- 2017
103. Primary Hydromorphone-Related Intrathecal Catheter Tip Granulomas: Is There a Role for Dose and Concentration?
- Author
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Veizi IE, Hayek SM, Hanes M, Galica R, Katta S, and Yaksh T
- Subjects
- Aged, Bupivacaine adverse effects, Dose-Response Relationship, Drug, Drug Delivery Systems, Female, Follow-Up Studies, Granuloma diagnostic imaging, Humans, Magnetic Resonance Imaging, Male, Middle Aged, Retrospective Studies, Spinal Cord diagnostic imaging, Time Factors, Granuloma etiology, Hydromorphone adverse effects, Injections, Spinal adverse effects, Narcotics adverse effects
- Abstract
Background: Intrathecal drug delivery therapy has been used effectively in treating patients with intractable chronic pain. The development of an intrathecal catheter tip granuloma (ICTG) related to delivery of intrathecal opiates is a relatively infrequent, but potentially devastating complication. While there are many morphine-related ICTG cases described, reports of hydromorphone-related ICTG are limited. In addition, studies suggest a strong correlation between the use of higher doses and concentrations of intrathecal opiates and ICTG formation., Objective: The objective of this study is to determine the incidence and the association of intrathecal hydromorphone dose, concentration, duration of treatment and concomitant agents with ICTG formation., Study Design: This is a retrospective analysis of 101 consecutive patients implanted with intrathecal infusion delivery devices. Data were collected from chart review, and records of pump refills from the division of Pain Medicine of University Hospitals or outsourced to a home pump refill service., Results: From a cohort of 101 consecutively implanted patients, 69 were treated with intrathecal hydromorphone and followed up postimplant for an average of 33.5 ± 24 months (range 0-93 months; 95% CI of 27-39 months). The incidence of ICTG in our patient population was 8.7% during this period of time postimplant with mean time to granuloma detection 35.1 ± 7.9 months. Patients developing granuloma (n = 6) were treated with a combination of intrathecal hydromorphone and bupivacaine infusion. Exposure time to intrathecal agents was not different between the granuloma and nongranuloma group. Monthly dose increase of hydromorphone was higher in granuloma group vs. non-granuloma group (58 ± 34 mcg/month n = 6 vs. 25 ± 8 mcg/month n = 63). Four out of six granuloma cases occurred with low dose and concentration of IT hydromorphone (160-370 mcg/day; 0.75-1.0 mg/mL concentration). Intrathecal bupivacaine dose was not different between groups. A subset of patients was treated with intrathecal fentanyl and bupivacaine. No intrathecal granulomas occurred in this patient cohort., Conclusion: This is the first clinical report demonstrating an association of hydromorphone with intrathecal granulomas, particularly at low doses and concentrations of hydromorphone. This study supports the notion that using low dose of IT opioids might not protect against ICTG development but that the level of exposure and type of opioid used in IT space might be highly correlated with ICTG development. Further research and recommendations related to chronic intrathecal opioid infusions are necessary to raise awareness of significant incidence of ICTG and development of tests to isolate patient populations at high risk., (© 2016 International Neuromodulation Society.)
- Published
- 2016
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104. The First National Study of Neighborhood Parks: Implications for Physical Activity.
- Author
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Cohen DA, Han B, Nagel CJ, Harnik P, McKenzie TL, Evenson KR, Marsh T, Williamson S, Vaughan C, and Katta S
- Subjects
- Adolescent, Adult, Aged, Child, Female, Humans, Male, United States, Exercise, Parks, Recreational statistics & numerical data
- Abstract
Introduction: An extensive infrastructure of neighborhood parks supports leisure time physical activity in most U.S. cities; yet, most Americans do not meet national guidelines for physical activity. Neighborhood parks have never been assessed nationally to identify their role in physical activity., Methods: Using a stratified multistage sampling strategy, a representative sample of 174 neighborhood parks in 25 major cities (population >100,000) across the U.S. was selected. Park use, park-based physical activity, and park conditions were observed during a typical week using systematic direct observation during spring/summer of 2014. Park administrators were interviewed to assess policies and practices. Data were analyzed in 2014-2015 using repeated-measure negative binomial regressions to estimate weekly park use and park-based physical activity., Results: Nationwide, the average neighborhood park of 8.8 acres averaged 20 users/hour or an estimated 1,533 person hours of weekly use. Walking loops and gymnasia each generated 221 hours/week of moderate to vigorous physical activity. Seniors represented 4% of park users, but 20% of the general population. Parks were used less in low-income than in high-income neighborhoods, largely explained by fewer supervised activities and marketing/outreach efforts. Programming and marketing were associated with 37% and 63% more hours of moderate to vigorous physical activity/week in parks, respectively., Conclusions: The findings establish national benchmarks for park use, which can guide future park investments and management practices to improve population health. Offering more programming, using marketing tools like banners and posters, and installing facilities like walking loops, may help currently underutilized parks increase population physical activity., (Copyright © 2016 American Journal of Preventive Medicine. Published by Elsevier Inc. All rights reserved.)
- Published
- 2016
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105. Identification of Key Gaps in Cancer Survivorship Research: Findings From the American Society of Clinical Oncology Survey.
- Author
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Jacobsen PB, Rowland JH, Paskett ED, Van Leeuwen F, Moskowitz C, Katta S, Wollins D, and Robison LL
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- Health Surveys, Humans, Medical Oncology, Neoplasms therapy, Survival Rate, United States, Epidemiologic Research Design, Neoplasms mortality
- Published
- 2016
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106. A novel genomic alteration of LSAMP associates with aggressive prostate cancer in African American men.
- Author
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Petrovics G, Li H, Stümpel T, Tan SH, Young D, Katta S, Li Q, Ying K, Klocke B, Ravindranath L, Kohaar I, Chen Y, Ribli D, Grote K, Zou H, Cheng J, Dalgard CL, Zhang S, Csabai I, Kagan J, Takeda D, Loda M, Srivastava S, Scherf M, Seifert M, Gaiser T, McLeod DG, Szallasi Z, Ebner R, Werner T, Sesterhenn IA, Freedman M, Dobi A, and Srivastava S
- Subjects
- Aged, Biomarkers, Tumor, Cluster Analysis, Disease Progression, GPI-Linked Proteins genetics, Gene Deletion, Gene Rearrangement, Genetic Loci, Genomics, High-Throughput Nucleotide Sequencing, Humans, Male, Middle Aged, Mutation, Neoplasm Grading, Neoplasm Staging, Oncogene Proteins, Fusion genetics, PTEN Phosphohydrolase, Polymorphism, Single Nucleotide, Prostatic Neoplasms metabolism, Reproducibility of Results, Black or African American genetics, Cell Adhesion Molecules, Neuronal genetics, Genetic Association Studies, Genetic Variation, Prostatic Neoplasms genetics, Prostatic Neoplasms pathology
- Abstract
Evaluation of cancer genomes in global context is of great interest in light of changing ethnic distribution of the world population. We focused our study on men of African ancestry because of their disproportionately higher rate of prostate cancer (CaP) incidence and mortality. We present a systematic whole genome analyses, revealing alterations that differentiate African American (AA) and Caucasian American (CA) CaP genomes. We discovered a recurrent deletion on chromosome 3q13.31 centering on the LSAMP locus that was prevalent in tumors from AA men (cumulative analyses of 435 patients: whole genome sequence, 14; FISH evaluations, 101; and SNP array, 320 patients). Notably, carriers of this deletion experienced more rapid disease progression. In contrast, PTEN and ERG common driver alterations in CaP were significantly lower in AA prostate tumors compared to prostate tumors from CA. Moreover, the frequency of inter-chromosomal rearrangements was significantly higher in AA than CA tumors. These findings reveal differentially distributed somatic mutations in CaP across ancestral groups, which have implications for precision medicine strategies.
- Published
- 2015
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107. Susceptibility to oral cancers with CD95 and CD95L promoter SNPs may vary with the site and gender.
- Author
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Daripally S, Nallapalle SR, Katta S, and Prasad VV
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Carcinoma, Squamous Cell genetics, Carcinoma, Squamous Cell mortality, Carcinoma, Squamous Cell secondary, Carcinoma, Verrucous genetics, Carcinoma, Verrucous mortality, Carcinoma, Verrucous secondary, Case-Control Studies, Female, Follow-Up Studies, Gender Identity, Genotype, Humans, Lymphatic Metastasis, Male, Middle Aged, Mouth Mucosa, Mouth Neoplasms mortality, Mouth Neoplasms pathology, Neoplasm Invasiveness, Neoplasm Recurrence, Local genetics, Neoplasm Recurrence, Local mortality, Neoplasm Recurrence, Local pathology, Neoplasm Staging, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, Prognosis, Risk Factors, Survival Rate, Young Adult, Fas Ligand Protein genetics, Genetic Predisposition to Disease, Mouth Neoplasms genetics, Polymorphism, Single Nucleotide genetics, Promoter Regions, Genetic genetics, fas Receptor genetics
- Abstract
We investigated risk association of oral cancers (tongue and buccal mucosa cancers) with FAS (-1377G > A and FAS -670 A > G) and FASL (-844 T > C) SNPs, in males and females. A case-control study of 535 oral cancer and 525 control subjects was performed. SNPs were detected in the genomic DNA isolated from peripheral blood using PCR-RFLP. We report FASL -844 T > C SNPs increased risk for buccal mucosa cancer in females but not in males. On the other hand, FAS genotypes did not alter the risk of the cancers in both females and males. However, co-occurrence of FAS -1377 GA and -670 GG, FAS -1377 AA and -670 GG genotypes, and combined genotypes of FAS and FASL (FAS -1377 AA + FAS -670 GG + FASL -844 CC) alter male susceptibility towards tongue cancer. In females, combined genotypes of FAS (-1377GA and -670 AA) were found to be a risk factor of buccal mucosa cancer (OR = 3.27, CI = 1.28-8.36; P ≤ 0.01). FASL variants (GA and AA) increased tongue cancer risk in females who were tobacco users compared to non-tobacco users. In conclusion, SNPs of the FAS and FASL might alter risk of tongue and buccal mucosa cancers differentially, in a gender-dependent manner.
- Published
- 2015
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108. Oral and salivary changes in patients with chronic kidney disease: A clinical and biochemical study.
- Author
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Anuradha BR, Katta S, Kode VS, Praveena C, Sathe N, Sandeep N, and Penumarty S
- Abstract
Background: Both chronic kidney disease (CKD) and its treatment can affect a wide range of tissues and systems. It directly or indirectly affects flow, concentrations and composition of saliva. Hemodialysis can effectively minimize most of these complications to some extent., Aims: The main aim of this study was to know the salivary content of sodium, potassium, calcium, urea, bicarbonate and oral manifestations in patients with CKD., Materials and Methods: For this study, 50 patients diagnosed with CKD and 50 systemically and periodontally healthy individuals were subjected to a detailed general and intraoral examination. Whole un-stimulated saliva samples of all the selected subjects were collected and subjected to calcium (Ca), phosphorous (P), sodium (Na), potassium (K), bicarbonate and urea analysis., Statistical Analysis Used: Paired t-test, Mann-Whitney test., Results: Among 50 study subjects, 26 subjects had reduced salivary flow in the range of 0.1-0.4 ml/min. Intraoral examination of the study subjects revealed pallor, increased deposition of calculus, bleeding gums, metallic taste, hypoplasia of teeth and fissured tongue. There was a significant difference between healthy and prehemodialysis patients in the salivary sodium, potassium, calcium, phosphorus, urea levels and the difference was insignificant in relation to bicarbonate levels., Conclusions: Alterations in salivary calcium, phosphorous, urea, sodium, potassium levels were significantly higher in the study groups when compared to control groups and the difference was insignificant in relation to bicarbonate level. The increased levels in dialysis patients correlated with renal disease severity.
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- 2015
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109. Reconstitution of the ERG Gene Expression Network Reveals New Biomarkers and Therapeutic Targets in ERG Positive Prostate Tumors.
- Author
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Dubovenko A, Serebryiskaya T, Nikolsky Y, Nikolskaya T, Perlina A, JeBailey L, Bureeva S, Katta S, Srivastava S, Dobi A, and Khasanova T
- Abstract
Background: Despite a growing number of studies evaluating cancer of prostate (CaP) specific gene alterations, oncogenic activation of the ETS Related Gene (ERG) by gene fusions remains the most validated cancer gene alteration in CaP. Prevalent gene fusions have been described between the ERG gene and promoter upstream sequences of androgen-inducible genes, predominantly TMPRSS2 (transmembrane protease serine 2). Despite the extensive evaluations of ERG genomic rearrangements, fusion transcripts and the ERG oncoprotein, the prognostic value of ERG remains to be better understood. Using gene expression dataset from matched prostate tumor and normal epithelial cells from an 80 GeneChip experiment examining 40 tumors and their matching normal pairs in 40 patients with known ERG status, we conducted a cancer signaling-focused functional analysis of prostatic carcinoma representing moderate and aggressive cancers stratified by ERG expression., Results: In the present study of matched pairs of laser capture microdissected normal epithelial cells and well-to-moderately differentiated tumor epithelial cells with known ERG gene expression status from 20 patients with localized prostate cancer, we have discovered novel ERG associated biochemical networks., Conclusions: Using causal network reconstruction methods, we have identified three major signaling pathways related to MAPK/PI3K cascade that may indeed contribute synergistically to the ERG dependent tumor development. Moreover, the key components of these pathways have potential as biomarkers and therapeutic target for ERG positive prostate tumors.
- Published
- 2015
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110. Feeling force: physical and physiological principles enabling sensory mechanotransduction.
- Author
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Katta S, Krieg M, and Goodman MB
- Subjects
- Animals, Humans, Hearing physiology, Mechanoreceptors physiology, Mechanotransduction, Cellular physiology, Touch physiology
- Abstract
Organisms as diverse as microbes, roundworms, insects, and mammals detect and respond to applied force. In animals, this ability depends on ionotropic force receptors, known as mechanoelectrical transduction (MeT) channels, that are expressed by specialized mechanoreceptor cells embedded in diverse tissues and distributed throughout the body. These cells mediate hearing, touch, and proprioception and play a crucial role in regulating organ function. Here, we attempt to integrate knowledge about the architecture of mechanoreceptor cells and their sensory organs with principles of cell mechanics, and we consider how engulfing tissues contribute to mechanical filtering. We address progress in the quest to identify the proteins that form MeT channels and to understand how these channels are gated. For clarity and convenience, we focus on sensory mechanobiology in nematodes, fruit flies, and mice. These themes are emphasized: asymmetric responses to applied forces, which may reflect anisotropy of the structure and mechanics of sensory mechanoreceptor cells, and proteins that function as MeT channels, which appear to have emerged many times through evolution.
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- 2015
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111. Structural and functional prevention of hypoxia-induced pulmonary hypertension by individualized exercise training in mice.
- Author
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Weissmann N, Peters DM, Klöpping C, Krüger K, Pilat C, Katta S, Seimetz M, Ghofrani HA, Schermuly RT, Witzenrath M, Seeger W, Grimminger F, and Mooren FC
- Subjects
- 3',5'-Cyclic-AMP Phosphodiesterases genetics, 3',5'-Cyclic-AMP Phosphodiesterases metabolism, Animals, Exercise Therapy, Exercise Tolerance, Gene Expression, Hypertension, Pulmonary etiology, Hypoxia complications, Lung blood supply, Lung metabolism, Male, Mice, Mice, Inbred C57BL, Muscle, Smooth, Vascular physiopathology, Nitric Oxide Synthase genetics, Nitric Oxide Synthase metabolism, Oxygen Consumption, Phosphodiesterase 5 Inhibitors pharmacology, Physical Conditioning, Animal, Piperazines pharmacology, Purines pharmacology, Signal Transduction, Sildenafil Citrate, Sulfones pharmacology, Ventricular Pressure, Hypertension, Pulmonary prevention & control, Hypoxia therapy
- Abstract
Pulmonary hypertension (PH) is a disease with a poor prognosis characterized by a vascular remodeling process and an increase in pulmonary vascular resistance. While a variety of reports demonstrated that exercise training exerts beneficial effects on exercise performance and quality of life in PH patients, it is not known how physical exercise affects vascular remodeling processes occurring in hypoxia-induced PH. Therefore, we investigated the effect of individualized exercise training on the development of hypoxia-induced PH in mice. Training effects were compared with pharmacological treatment with the phosphodiesterase 5 inhibitor Sildenafil or a combination of training plus Sildenafil. Trained mice who received Sildenafil showed a significantly improved walking distance (from 88.9 ± 8.1 to 146.4 ± 13.1 m) and maximum oxygen consumption (from 93.3 ± 2.9 to 105.5 ± 2.2% in combination with Sildenafil, to 102.2 ± 3.0% with placebo) compared with sedentary controls. Right ventricular systolic pressure, measured by telemetry, was at the level of healthy normoxic animals, whereas right heart hypertrophy did not benefit from training. Most interestingly, the increase in small pulmonary vessel muscularization was prevented by training. Respective counterregulatory processes were detected for the nitric oxide-soluble guanylate cyclase-phosphodiesterase system. We conclude that individualized daily exercise can prevent vascular remodeling in hypoxia-induced PH., (Copyright © 2014 the American Physiological Society.)
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- 2014
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112. Loss of the NKX3.1 tumorsuppressor promotes the TMPRSS2-ERG fusion gene expression in prostate cancer.
- Author
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Thangapazham R, Saenz F, Katta S, Mohamed AA, Tan SH, Petrovics G, Srivastava S, and Dobi A
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- Animals, Base Sequence, Binding Sites, Cell Line, Tumor, Down-Regulation, Gene Expression Regulation, Neoplastic, Gene Knockdown Techniques, HEK293 Cells, Homeodomain Proteins metabolism, Humans, Male, Molecular Sequence Data, NF-kappa B genetics, NF-kappa B metabolism, Oncogene Proteins, Fusion metabolism, Promoter Regions, Genetic, Prostatic Neoplasms metabolism, Prostatic Neoplasms pathology, RNA Interference, Species Specificity, Transcription Factors metabolism, Transcription, Genetic, Transfection, Gene Fusion, Homeodomain Proteins genetics, Oncogene Proteins, Fusion genetics, Prostatic Neoplasms genetics, Transcription Factors genetics
- Abstract
Background: In normal prostate epithelium the TMPRSS2 gene encoding a type II serine protease is directly regulated by male hormones through the androgen receptor. In prostate cancer ERG protooncogene frequently gains hormonal control by seizing gene regulatory elements of TMPRSS2 through genomic fusion events. Although, the androgenic activation of TMPRSS2 gene has been established, little is known about other elements that may interact with TMPRSS2 promoter sequences to modulate ERG expression in TMPRSS2-ERG gene fusion context., Methods: Comparative genomic analyses of the TMPRSS2 promoter upstream sequences and pathway analyses were performed by the Genomatix Software. NKX3.1 and ERG genes expressions were evaluated by immunoblot or by quantitative Real-Time PCR (qRT-PCR) assays in response to siRNA knockdown or heterologous expression. QRT-PCR assay was used for monitoring the gene expression levels of NKX3.1-regulated genes. Transcriptional regulatory function of NKX3.1 was assessed by luciferase assay. Recruitment of NKX3.1 to its cognate elements was monitored by Chromatin Immunoprecipitation assay., Results: Comparative analysis of the TMPRSS2 promoter upstream sequences among different species revealed the conservation of binding sites for the androgen inducible NKX3.1 tumor suppressor. Defects of NKX3.1, such as, allelic loss, haploinsufficiency, attenuated expression or decreased protein stability represent established pathways in prostate tumorigenesis. We found that NKX3.1 directly binds to TMPRSS2 upstream sequences and negatively regulates the expression of the ERG protooncogene through the TMPRSS2-ERG gene fusion., Conclusions: These observations imply that the frequently noted loss-of-function of NKX3.1 cooperates with the activation of TMPRSS2-ERG fusions in prostate tumorigenesis.
- Published
- 2014
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113. Evaluation of ERG responsive proteome in prostate cancer.
- Author
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Tan SH, Furusato B, Fang X, He F, Mohamed AA, Griner NB, Sood K, Saxena S, Katta S, Young D, Chen Y, Sreenath T, Petrovics G, Dobi A, McLeod DG, Sesterhenn IA, Saxena S, and Srivastava S
- Subjects
- Aged, Biomarkers, Tumor biosynthesis, Cell Line, Tumor, Gene Regulatory Networks genetics, Humans, Male, Middle Aged, Oncogene Proteins biosynthesis, Prostatic Neoplasms metabolism, Prostatic Neoplasms pathology, Proto-Oncogene Mas, Trans-Activators biosynthesis, Transcriptional Regulator ERG, Biomarkers, Tumor genetics, Oncogene Proteins genetics, Prostatic Neoplasms genetics, Proteome genetics, Trans-Activators genetics
- Abstract
Background: Gene fusion between TMPRSS2 promoter and the ERG proto-oncogene is a major genomic alteration found in over half of prostate cancers (CaP), which leads to aberrant androgen dependent ERG expression. Despite extensive analysis for the biological functions of ERG in CaP, there is no systematic evaluation of the ERG responsive proteome (ERP). ERP has the potential to define new biomarkers and therapeutic targets for prostate tumors stratified by ERG expression., Methods: Global proteome analysis was performed by using ERG (+) and ERG (-) CaP cells isolated by ERG immunohistochemistry defined laser capture microdissection and by using TMPRSS2-ERG positive VCaP cells treated with ERG and control siRNA., Results: We identified 1,196 and 2,190 unique proteins stratified by ERG status from prostate tumors and VCaP cells, respectively. Comparative analysis of these two proteomes identified 330 concordantly regulated proteins characterizing enrichment of pathways modulating cytoskeletal and actin reorganization, cell migration, protein biosynthesis, and proteasome and ER-associated protein degradation. ERPs unique for ERG (+) tumors reveal enrichment for cell growth and survival pathways while proteasome and redox function pathways were enriched in ERPs unique for ERG (-) tumors. Meta-analysis of ERPs against CaP gene expression data revealed that Myosin VI and Monoamine oxidase A were positively and negatively correlated to ERG expression, respectively., Conclusions: This study delineates the global proteome for prostate tumors stratified by ERG expression status. The ERP data confirm the functions of ERG in inhibiting cell differentiation and activating cell growth, and identify potentially novel biomarkers and therapeutic targets., (© 2013 Wiley Periodicals, Inc.)
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- 2014
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114. Chitooligosaccharides are converted to N-acetylglucosamine by N-acetyl-β-hexosaminidase from Stenotrophomonas maltophilia.
- Author
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Katta S, Ankati S, and Podile AR
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- Cloning, Molecular, Enzyme Stability, Escherichia coli genetics, Hydrogen-Ion Concentration, Kinetics, Molecular Weight, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins isolation & purification, Recombinant Proteins metabolism, Stenotrophomonas maltophilia genetics, Temperature, beta-N-Acetylhexosaminidases chemistry, beta-N-Acetylhexosaminidases genetics, beta-N-Acetylhexosaminidases isolation & purification, Acetylglucosamine metabolism, Chitosan metabolism, Oligosaccharides metabolism, Stenotrophomonas maltophilia enzymology, beta-N-Acetylhexosaminidases metabolism
- Abstract
The Stenotrophomonas maltophilia k279a (Stm) Hex gene encodes a polypeptide of 785 amino acid residues, with an N-terminal signal peptide. StmHex was cloned without signal peptide and expressed as an 83.6 kDa soluble protein in Escherichia coli BL21 (DE3). Purified StmHex was optimally active at pH 5.0 and 40 °C. The Vmax, Km and kcat/Km for StmHex towards chitin hexamer were 10.55 nkat (mg protein)(-1), 271 μM and 0.246 s(-1) mM(-1), while the kinetic values with chitobiose were 30.65 nkat (mg protein)(-1), 2365 μM and 0.082 s(-1) mM(-1), respectively. Hydrolytic activity on chitooligosaccharides indicated that StmHex was an exo-acting enzyme and yielded N-acetyl-D-glucosamine (GlcNAc) as the final product. StmHex hydrolysed chitooligosaccharides (up to hexamer) into GlcNAc within 60 min, suggesting that this enzyme has potential for use in large-scale production of GlcNAc from chitooligosaccharides., (© 2013 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.)
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- 2013
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115. A 'toothache tree' alkylamide inhibits Aδ mechanonociceptors to alleviate mechanical pain.
- Author
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Tsunozaki M, Lennertz RC, Vilceanu D, Katta S, Stucky CL, and Bautista DM
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- Amides therapeutic use, Animals, CHO Cells, Cells, Cultured, Cricetulus, Ganglia, Spinal cytology, Hot Temperature, Male, Mechanoreceptors physiology, Mice, Mice, Inbred C57BL, Neurons drug effects, Neurons physiology, Pain drug therapy, Pain etiology, Sodium Channel Blockers therapeutic use, Zanthoxylum, Amides pharmacology, Pain physiopathology, Sodium Channel Blockers pharmacology, Voltage-Gated Sodium Channels physiology
- Abstract
In traditional medicine, the 'toothache tree' and other plants of the Zanthoxylum genus have been used to treat inflammatory pain conditions, such as toothache and rheumatoid arthritis. Here we examined the cellular and molecular mechanisms underlying the analgesic properties of hydroxy-α-sanshool, the active alkylamide produced by Zanthoxylum plants. Consistent with its analgesic effects in humans, sanshool treatment in mice caused a selective attenuation of mechanical sensitivity under naïve and inflammatory conditions, with no effect on thermal sensitivity. To elucidate the molecular mechanisms by which sanshool attenuates mechanical pain, we performed single fibre recordings, calcium imaging and whole-cell electrophysiology of cultured sensory neurons. We found that: (1) sanshool potently inhibits Aδ mechanonociceptors that mediate both sharp acute pain and inflammatory pain; (2) sanshool inhibits action potential firing by blocking voltage-gated sodium currents in a subset of somatosensory neurons, which express a unique combination of voltage-gated sodium channels; and (3) heterologously expressed Nav1.7 is most strongly inhibited by sanshool as compared to other sodium channels expressed in sensory neurons. These results suggest that sanshool targets voltage-gated sodium channels on Aδ mechanosensory nociceptors to dampen excitability and thus induce 'fast pain' analgesia.
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- 2013
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116. Association of the del443ins54 at the ARMS2 locus in Indian and Australian cohorts with age-related macular degeneration.
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Kaur I, Cantsilieris S, Katta S, Richardson AJ, Schache M, Pappuru RR, Narayanan R, Mathai A, Majji AB, Tindill N, Guymer RH, Chakrabarti S, and Baird PN
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- Australia, Cohort Studies, Gene Frequency genetics, Haplotypes genetics, High-Temperature Requirement A Serine Peptidase 1, Humans, India, Linkage Disequilibrium genetics, Polymorphism, Single Nucleotide genetics, Risk Factors, Serine Endopeptidases genetics, Genetic Association Studies, Genetic Loci genetics, Genetic Predisposition to Disease, INDEL Mutation genetics, Macular Degeneration genetics, Proteins genetics
- Abstract
Purpose: The ARMS2/HTRA1 genes at the 10q26 locus have been associated with risk of age-related macular degeneration (AMD), with the most significantly associated variants being A69S (rs10490924), del443ins54 (EU427539) and rs11200638. We wished to explore the association of the del443ins54 in two ethnically different populations from India and Australia., Methods: The del443ins54 was screened in a large cohort of ~1500 subjects from these two populations by a combination of PCR-based agarose gel electrophoresis and validated by resequencing. Statistical analysis comprised the calculations of allele, genotype and haplotype frequencies along with their p values and corresponding odds ratios (OR), and 95% confidence intervals (95% CI) and measures of linkage disequilibrium (LD)., Results: The del443ins54 was significantly associated with AMD in both the Indian (p=1.74 × 10(-13); OR = 2.80, 95%CI, 2.12-3.70) and Australian cohorts (p = 2.78 × 10(-30); OR = 3.15, 95%CI, 2.58-3.86). These associations were similar to those previously identified for the A69S and the rs11200638 variant in these populations that also exhibited high degrees of LD (D' of 0.87-0.99). A major risk haplotype of "T-indel-A" (p = 5.7 × 10(-16); OR = 3.16, 95%CI, 2.34-4.19 and p=6.33 × 10(-30); OR = 3.15, 95%CI, 2.57-3.85) and a protective haplotype of "G-wild type-G" (p=2.35 × 10(-11); OR = 0.39, 95%CI, 0.29-0.52 and p=1.02 × 10(-30); OR = 0.31, 95%CI, 0.25-0.38) were identified in the Indian and Australian cohorts, respectively., Conclusions: These data provide an independent replication of the association of del443ins54 variant in two different ethnicities, despite differences in allele and haplotype frequencies between them. High levels of LD in both populations limit further genetic dissection of this region in AMD.
- Published
- 2013
117. MAO-A promoter polymorphism and idiopathic pulmonary arterial hypertension.
- Author
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Vadapalli S, Katta S, Sastry BK, and Nallari P
- Subjects
- Adolescent, Adult, Alleles, Base Sequence, Case-Control Studies, Electrophoresis, Polyacrylamide Gel, Familial Primary Pulmonary Hypertension, Female, Gene Frequency, Genotype, Humans, Hypertension, Pulmonary genetics, Isoenzymes genetics, Male, Minisatellite Repeats, Promoter Regions, Genetic, Random Amplified Polymorphic DNA Technique, Silver Staining, Young Adult, Monoamine Oxidase genetics, Polymorphism, Genetic
- Published
- 2010
118. The involvement of complement factor B and complement component C2 in an Indian cohort with age-related macular degeneration.
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Kaur I, Katta S, Reddy RK, Narayanan R, Mathai A, Majji AB, and Chakrabarti S
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- Alleles, Genotype, Haplotypes, Humans, India, Linkage Disequilibrium, Odds Ratio, Asian People genetics, Complement C2 genetics, Complement Factor B genetics, Macular Degeneration genetics, Polymorphism, Single Nucleotide
- Abstract
Purpose: Genes involved in the complement cascade such as complement factor B (CFB) and complement component C2 have been implicated in age-related macular degeneration (AMD) worldwide. In continuation of the analysis of CFH and LOC387715/HTRA1, this study was conducted to gain understanding of the role of CFB and C2 in an Indian AMD cohort., Methods: Single nucleotide polymorphisms in CFB and C2 were screened in a cohort of clinically well-characterized patients with AMD (n = 177) and unaffected normal control subjects (n = 175). Screening was accomplished by a combination of customized genotyping followed by validation through resequencing. In addition, genotyping of two CFB variants (rs12614 and rs641153) that were in close proximity had to be resolved by resequencing. Estimates of allele and genotype frequencies, odds ratios, Hardy-Weinberg equilibrium, linkage disequilibrium (LD), and haplotype frequencies were also performed., Results: Three SNPs in C2 (rs547154 [IVS10]; P = 5.4 x 10(-11)) and CFB (rs641153 [R32Q], P = 2.2 x 10(-7) and rs2072633 [IVS17]; P = 2.0 x 10(-4)) were strongly associated with reduced risk of AMD. The rs547154 and rs641153 were in strong LD (D' = 0.90, 95% CI = 0.81-0.96) and a protective haplotype T-A was observed (OR = 0.10, 95% CI = 0.05-0.20). LD was moderate (D' = 0.77, 95% CI = 0.67-0.85) between the rs547154 and the rs2072633 SNPs, and the haplotype T-T generated with these SNPs was relatively less protective (OR = 0.28, 95% CI = 0.18-0.44)., Conclusions: The results of the present study provide an independent validation of the association of rs547154 (C2) and rs641153 (CFB) SNPs with reduced risk of AMD in an Indian cohort.
- Published
- 2010
- Full Text
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119. The molecular genetic basis of age-related macular degeneration: an overview.
- Author
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Katta S, Kaur I, and Chakrabarti S
- Subjects
- Chromosome Mapping, Genome, Human, Genome-Wide Association Study, Humans, Lod Score, Genetic Predisposition to Disease genetics, Macular Degeneration genetics, Polymorphism, Single Nucleotide
- Abstract
Age-related macular degeneration (AMD) is a complex disorder of the eye and the third leading cause of blindness worldwide. With a multifactorial etiology, AMD results in progressive loss of central vision affecting the macular region of the eye in elderly. While the prevalence is relatively higher in the Caucasian populations, it has gradually become a major public health issue among the non-Caucasian populations (including Indians) as well due to senescence, rapidly changing demographics and life-style factors. Recent genome-wide association studies (GWAS) on large case-control cohorts have helped in mapping genes in the complement cascade that are involved in the regulation of innate immunity with AMD susceptibility. Genes involved with mitochondrial oxidative stress and extracellular matrix regulation also play a role in AMD pathogenesis. Majority of the associations observed in complement (CFH, CFB, C2 and C3) and other (ARMS2 and HTRA1) genes have been replicated in diverse populations worldwide. Gene-gene (CFH with ARMS2 and HTRA1) interactions and correlations with environmental traits (smoking and body mass index) have been established as significant covariates in AMD pathology. In this review, we have provided an overview on the underlying molecular genetic mechanisms in AMD worldwide and highlight the AMD-associated-candidate genes and their potential role in disease pathogenesis.
- Published
- 2009
- Full Text
- View/download PDF
120. Variants in the 10q26 gene cluster (LOC387715 and HTRA1) exhibit enhanced risk of age-related macular degeneration along with CFH in Indian patients.
- Author
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Kaur I, Katta S, Hussain A, Hussain N, Mathai A, Narayanan R, Hussain A, Reddy RK, Majji AB, Das T, and Chakrabarti S
- Subjects
- Aged, Complement Factor H genetics, Exons genetics, Haplotypes, High-Temperature Requirement A Serine Peptidase 1, Humans, India, Linkage Disequilibrium, Meta-Analysis as Topic, Middle Aged, Multigene Family, Odds Ratio, Polymerase Chain Reaction, Promoter Regions, Genetic genetics, Risk Factors, Chromosomes, Human, Pair 10 genetics, Macular Degeneration genetics, Polymorphism, Single Nucleotide, Proteins genetics, Serine Endopeptidases genetics
- Abstract
Purpose: Single nucleotide polymorphisms (SNPs) in the LOC387715 (rs10490924), HTRA1 (rs11200638), and CFH (rs1061170) genes have been implicated in age-related macular degeneration (AMD). The present study was undertaken to determine the involvement of the LOC387715 and HTRA1 in an AMD cohort from India., Methods: The coding region of LOC387715 (exon 1) and the promoter of HTRA1 were screened by resequencing in AMD cases and normal controls. Odds ratios were calculated to assess the risk of individual genotypes. Linkage disequilibrium (LD) and haplotype frequencies were estimated with Haploview software. Population attributable risk (PAR %) for the associated SNPs and their combined effects were calculated., Results: Resequencing revealed seven different SNPs in these genes, of which significant associations were noted with the risk alleles of rs10490924 (T allele; P = 5.34 x 10(-12)) in LOC387715, and rs11200638 (A allele; P = 4.32 x 10(-12)) and rs2672598 (C allele; P = 3.39 x 10(-11)) in HTRA1 among the cases. Correspondingly, the homozygous risk genotypes TT, AA, and CC in these SNPs exhibited higher disease odds and PAR %. rs10490924 and rs11200638 were in tight LD (D', 0.90; 95% CI, 0.84-0.93). G-C-T-A-C was the risk haplotype (P = 8.04 x 10(-15)), whereas the G-C-G-G-T haplotype was protective (P = 2.01 x 10(-4)). The combined effect of the CFH (CC) and LOC387715 (TT) risk genotypes exhibited a PAR of 93.7% (OR, 73.89; 95% CI, 8.69-628.13)., Conclusions: The present data provided an independent validation of the association of LOC387715 and HTRA1 SNPs, along with their risk estimates among Indian patients with AMD. These associations underscore their significant involvement in AMD susceptibility, which may be useful for predictive testing.
- Published
- 2008
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121. t-plasminogen activator inhibitor-1 polymorphism in idiopathic pulmonary arterial hypertension.
- Author
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Katta S, Vadapalli S, Sastry BK, and Nallari P
- Abstract
Aim: The aim of the present study was to identify the possible genotypic association of 3'UTR Hind III polymorphism of Plasminogen activator Inhibitor-1 (PAI-1) gene with idiopathic pulmonary arterial hypertension (IPAH)., Background: IPAH is a disorder with abnormally raised mean pulmonary arterial pressure and increase in the resistance to blood flow in pulmonary artery. One of the pathological features seen is development of intraluminal thrombin deposition leading to thrombosis. Plasminogen activator inhibitor-1 is an important inhibitor of the fibrinolytic system; its up-regulation may suppress fibrinolysis and result in an increased risk of thrombosis., Method: Blood samples from 54 IPAH patients and 100 healthy voluntary donors were analyzed by PCR-RFLP method for 3'UTR Hind III polymorphism. RESULTS AND DISSCUSSION: A significant association of Hd2 allele with the disease was observed. Raised mean level of right ventricular systolic pressure was observed in the Hd2/Hd2 genotypic patients, strengthening the role of Hd2 allele in the disease progression. Our data suggests an association of Hd2/Hd2 genotype, which may lead to the up-regulation of PAI-1 gene leading to increased levels of PAI-1, which is seen in IPAH. PAI-1 competes with plasminogen activators and hinders the normal mechanism of plasminogen activation system and leads to thrombosis and formation of plexiform lesions in the lung tissue, further strengthening its role in tissue remodeling and disease progression.
- Published
- 2008
- Full Text
- View/download PDF
122. Giant aneurysms of coronary arteries and saphenous vein grafts: angiographic findings and histopathological correlates.
- Author
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Topaz O, Rutherford MS, Mackey-Bojack S, Prinz AW, Katta S, Salter D, and Titus JL
- Subjects
- Aged, Atherosclerosis etiology, Atherosclerosis pathology, Coronary Aneurysm complications, Coronary Aneurysm physiopathology, Coronary Angiography, Coronary Artery Bypass, Coronary Artery Disease surgery, Graft Occlusion, Vascular pathology, Humans, Male, Middle Aged, Saphenous Vein transplantation, Thrombosis etiology, Thrombosis pathology, Coronary Aneurysm pathology, Coronary Vessels pathology, Saphenous Vein pathology
- Abstract
Introduction: Giant aneurysms that develop in native coronary arteries or saphenous vein grafts are morphologically defined as abnormally expanded outpouching vascular structures >4 cm in diameter. The location, morphology, and content of giant aneurysms account for adverse cardiovascular effects., Methods: Two cases of giant aneurysms were studied comprehensively by noninvasive and invasive cardiac methods and subsequent histopathology. The first patient had a giant aneurysm that developed over a course of several years in a saphenous vein graft whereas the second patient had a giant aneurysm occurring within a native coronary artery. Accompanying clinical and angiographic findings are described., Results: Atherosclerosis and thrombosis were among the prominent histopathological findings., Conclusions: Atherosclerosis and associated thrombosis within giant aneurysms result in obstruction of flow, distal embolization, and development of acute coronary syndromes including recurrent ischemic chest pain, unstable angina, and acute myocardial infarction. The options for clinical management of giant coronary or vein graft aneurysms include surgical excision, percutaneous coil occlusion and stent deployment, or medical approach.
- Published
- 2005
- Full Text
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123. Casebook: shoulder pain.
- Author
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Pasapula C and Katta S
- Subjects
- Diagnosis, Differential, Humans, Medical History Taking, Physical Examination methods, Shoulder Impingement Syndrome etiology, Shoulder Impingement Syndrome therapy, Shoulder Pain etiology, Shoulder Pain therapy, Shoulder Impingement Syndrome diagnosis, Shoulder Pain diagnosis
- Published
- 2005
124. Atrioventricular fistula: an unusual complication of endomyocardial biopsy in a heart transplant recipient.
- Author
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Katta S, Akosah K, Stambler B, Salter D, Guerraty A, and Mohanty PK
- Subjects
- Cardiomyopathies diagnostic imaging, Echocardiography, Transesophageal, Fistula diagnostic imaging, Follow-Up Studies, Heart Atria injuries, Heart Injuries diagnostic imaging, Heart Transplantation diagnostic imaging, Heart Ventricles injuries, Humans, Male, Middle Aged, Ultrasonography, Doppler, Biopsy adverse effects, Cardiomyopathies etiology, Fistula etiology, Heart Injuries etiology, Heart Transplantation pathology, Myocardium pathology
- Abstract
Endomyocardial biopsy remains the primary method for diagnosis of cardiac allograft rejection. Generally, endomyocardial biopsy is considered a relatively safe procedure in heart transplant recipients. Complications that have been reported are related to catheter insertion and include carotid arterial puncture, prolonged bleeding, vasovagal reaction, ventricular tachyarrhythmias, and transient conduction abnormalities. Serious complications such as right ventricular perforation with cardiac tamponade may also occur. Most complications are usually without significant long-term sequelae. This report describes an unusual case of atrioventricular fistula between the right atrium and left ventricle that occurred during a routine endomyocardial biopsy in a heart transplant recipient. Sudden hemodynamic compromise developed in this patient soon after heart biopsy associated with hemodynamic picture of high-output heart failure. Right heart catheterization, including oximetry, peripheral venous contrast echocardiography, color flow Doppler studies, and transesophageal echocardiography confirmed the diagnosis of fistulous communication between the right atrium and left ventricle, most likely through the membranous interventricular septum. Conservative medical management resulted in striking clinical improvement within 48 hours commensurate with spontaneous closure of the right atrium-to-left ventricle fistula documented by hemodynamic and echocardiographic studies.
- Published
- 1994
- Full Text
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125. Hypertensive intracerebral hemorrhage stimulating acute myocardial infarction.
- Author
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Katta SR and Berk WA
- Subjects
- Cerebral Hemorrhage etiology, Diagnosis, Differential, Electrocardiography, Female, Humans, Hypertension complications, Middle Aged, Cerebral Hemorrhage diagnosis, Myocardial Infarction diagnosis
- Abstract
We describe the case of a patient who presented with cardiovascular collapse and ECG changes strongly suggestive of acute MI. Our experience and that of others with patients who had sustained intracerebral hemorrhage indicate the potential for this entity to be misdiagnosed as acute MI early in a patient's clinical course. Reports of mistaken administration of thrombolytic therapy to patients with pericarditis or aortic dissection, other conditions that may be electrocardiographically mimic MI, underscore the potential for error. Clinicians should consider the possibility of intracerebral hemorrhage before treatment of MI with thrombolytic agents.
- Published
- 1992
- Full Text
- View/download PDF
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