361 results on '"Jefferies, Caroline"'
Search Results
102. TRIM68 Negatively Regulates IFN-β Production by Degrading TRK Fused Gene, a Novel Driver of IFN-β Downstream of Anti-Viral Detection Systems
- Author
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Wynne, Claire, primary, Lazzari, Elisa, additional, Smith, Siobhán, additional, McCarthy, Eoghan M., additional, Ní Gabhann, Joan, additional, Kallal, Lara E., additional, Higgs, Rowan, additional, Cryan, Sally Ann, additional, Biron, Christine A., additional, and Jefferies, Caroline A., additional
- Published
- 2014
- Full Text
- View/download PDF
103. Loss of the lupus autoantigen Ro52/Trim21 induces tissue inflammation and systemic autoimmunity by disregulating the IL-23-Th17 pathway
- Author
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Espinosa, Alexander, Dardalhon, Valerie, Brauner, Susanna, Ambrosi, Aurelie, Higgs, Rowan, Quintana, Fransisco J., Sjöstrand, Maria, Eloranta, Maija-Leena, Ní Gabhann, Joan, Winqvist, Ola, Sundelin, Birgitta, Jefferies, Caroline A., Rozell, Björn, Kuchroo, Vijay K., Wahren-Herlenius, Marie, Espinosa, Alexander, Dardalhon, Valerie, Brauner, Susanna, Ambrosi, Aurelie, Higgs, Rowan, Quintana, Fransisco J., Sjöstrand, Maria, Eloranta, Maija-Leena, Ní Gabhann, Joan, Winqvist, Ola, Sundelin, Birgitta, Jefferies, Caroline A., Rozell, Björn, Kuchroo, Vijay K., and Wahren-Herlenius, Marie
- Abstract
Ro52/Trim21 is targeted as an autoantigen in systemic lupus erythematosus and Sjögren's syndrome. Polymorphisms in the Ro52 gene have been linked to these autoimmune conditions, but the molecular mechanism by which Ro52 may promote development of systemic autoimmune diseases has not been explored. To address this issue, we generated Ro52-null mice (Ro52(-/-)), which appear phenotypically normal if left unmanipulated. However, Ro52(-/-) mice develop severe dermatitis extending from the site of tissue injury induced by ear tags. The affected mice further develop several signs of systemic lupus with hypergammaglobulinemia, autoantibodies to DNA, proteinuria, and kidney pathology. Ro52, which was recently identified as an E3 ligase, mediates ubiquitination of several members of the interferon regulatory factor (IRF) family, and the Ro52-deficient mice have an enhanced production of proinflammatory cytokines that are regulated by the IRF transcription factors, including cytokines involved in the Th17 pathway (interleukin [IL] 6, IL-12/IL-23p40, and IL-17). Loss of IL-23/IL-17 by genetic deletion of IL-23/p19 in the Ro52(-/-) mice conferred protection from skin disease and systemic autoimmunity. These data reveal that the lupus-associated Ro52 protein is an important negative regulator of proinflammatory cytokine production, and they provide a mechanism by which a defective Ro52 function can lead to tissue inflammation and systemic autoimmunity through the IL-23-Th17 pathway.
- Published
- 2009
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- View/download PDF
104. Btk Regulates Macrophage Polarization in Response to Lipopolysaccharide
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Ní Gabhann, Joan, primary, Hams, Emily, additional, Smith, Siobhán, additional, Wynne, Claire, additional, Byrne, Jennifer C., additional, Brennan, Kiva, additional, Spence, Shaun, additional, Kissenpfennig, Adrien, additional, Johnston, James A., additional, Fallon, Padraic G., additional, and Jefferies, Caroline A., additional
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- 2014
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- View/download PDF
105. Estrogen Receptor α Regulates Tripartite Motif-Containing Protein 21 Expression, Contributing to Dysregulated Cytokine Production in Systemic Lupus Erythematosus
- Author
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Smith, Siobhán, primary, Ní Gabhann, Joan, additional, McCarthy, Eoghan, additional, Coffey, Barbara, additional, Mahony, Rebecca, additional, Byrne, Jennifer C., additional, Stacey, Kevin, additional, Ball, Elizabeth, additional, Bell, Aubrey, additional, Cunnane, Gaye, additional, Doran, Michele F., additional, Molloy, Eamonn S., additional, Lee, Ruth Z., additional, Harvey, Brian, additional, Kearns, Grainne, additional, and Jefferies, Caroline A., additional
- Published
- 2013
- Full Text
- View/download PDF
106. Bruton's Tyrosine Kinase Is Required for Apoptotic Cell Uptake via Regulating the Phosphorylation and Localization of Calreticulin
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Byrne, Jennifer C., primary, Ní Gabhann, Joan, additional, Stacey, Kevin B., additional, Coffey, Barbara M., additional, McCarthy, Eoghan, additional, Thomas, Warren, additional, and Jefferies, Caroline A., additional
- Published
- 2013
- Full Text
- View/download PDF
107. Ursodeoxycholic acid inhibits colonic mucosal cytokine release and prevents colitis in a mouse model of disease
- Author
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Ward, Joseph Bernard Jude, primary, Kelly, Orlaith B, additional, Jefferies, Caroline, additional, Murray, Frank E, additional, Fallon, Padraic G, additional, and Keely, Stephen J, additional
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- 2013
- Full Text
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108. NF-kB activation by the Toll-IL-1 receptor domain protein MyD88 adapter-like is regulated by caspase-1
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Miggin, Sinead, Palsson-McDermott, Eva M., Dunne, Aisling, Jefferies, Caroline, Pinteaux, Emmanuel, Banahan, Kathy, Murphy, Caroline, Moynagh, Paul N., Yamamoto, Masahiro, Akira, Shizuo, Rothwell, Nancy, Golenbock, Douglas, Fitzgerald, Katherine A., O'Neill, Luke A.J., Miggin, Sinead, Palsson-McDermott, Eva M., Dunne, Aisling, Jefferies, Caroline, Pinteaux, Emmanuel, Banahan, Kathy, Murphy, Caroline, Moynagh, Paul N., Yamamoto, Masahiro, Akira, Shizuo, Rothwell, Nancy, Golenbock, Douglas, Fitzgerald, Katherine A., and O'Neill, Luke A.J.
- Abstract
Toll-like receptors (TLRs)-2 and -4 are important proteins in innate immunity, recognizing microbial products and eliciting host defense responses. Both use the adapter proteins MyD88 and MyD88 adapterlike (Mal) to activate signaling pathways. Herewereport that Mal but not MyD88 interacts with caspase-1, the enzyme that processes the precursors of the proinflammatory cytokines IL-1B and IL-18. The interaction was found in a yeast two-hybrid screen and was confirmed by reciprocal GST pull-downs and coimmunoprecipitation of endogenous proteins. We were unable to implicate Mal in regulating caspase-1 activation. However, we found that Mal was cleaved by caspase-1 and that inhibition of caspase-1 activity blocked TLR2- and TLR4-mediated NF-kB and p38 MAP kinase activation but not IL-1 or TLR7 signaling, which are Mal independent. These responses, and the induction of TNF, were also attenuated in caspase-1-deficient cells. Finally, unlike wild-type Mal, a mutant Mal, which was not cleaved by caspase-1, was unable to signal and acted as a dominant negative inhibitor of TLR2 and TLR4 signaling. Our study therefore reveals a role for caspase-1 in the regulation of TLR2 and TLR4 signaling pathways via an effect on Mal. This functional interaction reveals an important aspect of the coordination between TLRs and caspase-1 during the innate response to pathogens.
- Published
- 2007
109. Fibroblast growth factor homologous factor 1 interacts with NEMO to regulate NF-κB signaling in neurons
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König, Hans-Georg, primary, Fenner, Beau J., additional, Byrne, Jennifer C., additional, Schwamborn, Robert F., additional, Bernas, Tytus, additional, Jefferies, Caroline A., additional, and Prehn, Jochen H. M., additional
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- 2012
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110. The role of TRIM68 in Toll-like receptor and RIG-I-like receptor induced interferon production (72.5)
- Author
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Wynne, Claire, primary, Higgs, Rowan, additional, Biron, Christine, additional, and Jefferies, Caroline, additional
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- 2012
- Full Text
- View/download PDF
111. Novel Role for Btk in the Induction of Classically Activated M1 Macrophages (65.9)
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Ni Gabhann, Joan, primary, Wynne, Claire, additional, Smith, Siobhan, additional, and Jefferies, Caroline, additional
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- 2012
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112. Tyrosine Phosphorylation of the E3 Ubiquitin Ligase TRIM21 Positively Regulates Interaction with IRF3 and Hence TRIM21 Activity
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Stacey, Kevin B., primary, Breen, Eamon, additional, and Jefferies, Caroline A., additional
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- 2012
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113. Antiviral TRIMs: friend or foe in autoimmune and autoinflammatory disease?
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Jefferies, Caroline, primary, Wynne, Claire, additional, and Higgs, Rowan, additional
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- 2011
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114. Evaluation and optimization of IgY Spin Column technology in the depletion of abundant proteins from human serum
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Corrigan, Laura, primary, Jefferies, Caroline, additional, Clive Lee, Thomas, additional, and Daly, Jacqueline, additional
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- 2011
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115. TLR-induced activation of Btk – Role for endosomal MHC class II molecules revealed
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Ní Gabhann, Joan, primary and Jefferies, Caroline A, additional
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- 2011
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116. Ursodeoxycholic Acid Inhibits Toll-Like Receptor-2 and -4 Driven Cytokine Release From Human Colonic Epithelium
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Kelly, Orlaith B., primary, Smith, Siobhan, additional, Jefferies, Caroline, additional, and Keely, Stephen J., additional
- Published
- 2011
- Full Text
- View/download PDF
117. This title is unavailable for guests, please login to see more information.
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Wietek, Claudia, Miggin, Sinead, Jefferies, Caroline, O'Neill, Luke A.J., Wietek, Claudia, Miggin, Sinead, Jefferies, Caroline, and O'Neill, Luke A.J.
- Published
- 2003
118. This title is unavailable for guests, please login to see more information.
- Author
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Wietek, Claudia, Miggin, Sinead, Jefferies, Caroline, O'Neill, Luke A.J., Wietek, Claudia, Miggin, Sinead, Jefferies, Caroline, and O'Neill, Luke A.J.
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- 2003
119. Mal and MyD88 : adapter proteins involved in signal transduction by Toll-like receptors
- Author
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O'Neill, Luke A. J., Dunne, Aisling, Ejdebäck, Mikael, Gray, Pearl, Jefferies, Caroline, Wietek, Claudia, O'Neill, Luke A. J., Dunne, Aisling, Ejdebäck, Mikael, Gray, Pearl, Jefferies, Caroline, and Wietek, Claudia
- Abstract
Signal transduction processes activated by Toll-like receptors (TLRs) include the important transcription factor NF-kappaB and 2 MAP kinases, p38 and Jun N-terminal kinase. These signals ultimately give rise to increased expression of a multitude of pro-inflammatory proteins. Receptor-proximal proteins involved in signalling by all TLRs include the adapter MyD88, 3 IRAKs (IRAK-4, IRAK and IRAK-2), Tollip, Traf-6 and TAK-1. Differences between signals generated by TLRs are emerging, with both TLR4 and TLR2 signalling requiring an additional adapter termed MyD88-adapter-like (Mal; also known as TIRAP). MyD88 and Mal both have a homologous Toll/IL-1 receptor (TIR) domain although they differ in their N-termini, with MyD88 possessing a death domain. In addition, structural models reveal marked differences in surface charges which, when taken with surface charge differences between TLR2 and TLR4 TIR domains, may indicate that TLR4 but not TLR2 recruits Mal directly. Another difference is that Mal can become phosphorylated. Future studies on Mal will reveal specificities in signal transduction by different TLRs, which may ultimately provide molecular explanations for specificities in the innate immune response to infection.
- Published
- 2003
- Full Text
- View/download PDF
120. Self Protection from Anti-Viral Responses – Ro52 Promotes Degradation of the Transcription Factor IRF7 Downstream of the Viral Toll-Like Receptors
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Higgs, Rowan, primary, Lazzari, Elisa, additional, Wynne, Claire, additional, Ní Gabhann, Joan, additional, Espinosa, Alexander, additional, Wahren-Herlenius, Marie, additional, and Jefferies, Caroline A., additional
- Published
- 2010
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121. Absence of SHIP-1 Results in Constitutive Phosphorylation of Tank-Binding Kinase 1 and Enhanced TLR3-Dependent IFN-β Production
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Gabhann, Joan Ní, primary, Higgs, Rowan, additional, Brennan, Kiva, additional, Thomas, Warren, additional, Damen, Jacqueline E., additional, Ben Larbi, Nadia, additional, Krystal, Gerald, additional, and Jefferies, Caroline A., additional
- Published
- 2010
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122. Siglec-E is up-regulated and phosphorylated following lipopolysaccharide stimulation in order to limit TLR-driven cytokine production
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Boyd, Caroline R., primary, Orr, Selinda J., additional, Spence, Shaun, additional, Burrows, James F., additional, Elliott, Joanne, additional, Carroll, Helen P., additional, Brennan, Kiva, additional, Ní Gabhann, Joan, additional, Coulter, Wilson A., additional, Johnston, James A., additional, and Jefferies, Caroline A., additional
- Published
- 2010
- Full Text
- View/download PDF
123. Siglec-E Is Up-Regulated and Phosphorylated Following Lipopolysaccharide Stimulation in Order to Limit TLR-Driven Cytokine Production
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Boyd, Caroline R., primary, Orr, Selinda J., additional, Spence, Shaun, additional, Burrows, James F., additional, Elliott, Joanne, additional, Carroll, Helen P., additional, Brennan, Kiva, additional, Gabhann, Joan Ní, additional, Coulter, Wilson A., additional, Johnston, James A., additional, and Jefferies, Caroline A., additional
- Published
- 2009
- Full Text
- View/download PDF
124. Loss of the lupus autoantigen Ro52/Trim21 induces tissue inflammation and systemic autoimmunity by disregulating the IL-23–Th17 pathway
- Author
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Espinosa, Alexander, primary, Dardalhon, Valerie, additional, Brauner, Susanna, additional, Ambrosi, Aurelie, additional, Higgs, Rowan, additional, Quintana, Fransisco J., additional, Sjöstrand, Maria, additional, Eloranta, Maija-Leena, additional, Ní Gabhann, Joan, additional, Winqvist, Ola, additional, Sundelin, Birgitta, additional, Jefferies, Caroline A., additional, Rozell, Björn, additional, Kuchroo, Vijay K., additional, and Wahren-Herlenius, Marie, additional
- Published
- 2009
- Full Text
- View/download PDF
125. The E3 Ubiquitin Ligase Ro52 Negatively Regulates IFN-β Production Post-Pathogen Recognition by Polyubiquitin-Mediated Degradation of IRF3
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Higgs, Rowan, primary, Gabhann, Joan Ní, additional, Larbi, Nadia Ben, additional, Breen, Eamon P., additional, Fitzgerald, Katherine A., additional, and Jefferies, Caroline A., additional
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- 2008
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126. Targeting IRFs by ubiquitination: regulating antiviral responses
- Author
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Higgs, Rowan, primary and Jefferies, Caroline A., additional
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- 2008
- Full Text
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127. 100 NF-κB Activation by Mal/Tirap is Regulated by Caspase-1
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Miggin, Sinead M., primary, Pålsson-McDermott, Eva, additional, Dunne, Aisling, additional, Jefferies, Caroline, additional, Pinteaux, Emmanuel, additional, Banahan, Kathy, additional, Murphy, Caroline, additional, Moynagh, Paul, additional, Yamamoto, Masahiro, additional, Akira, Shizuo, additional, Rothwell, Nancy, additional, Golenbock, Douglas, additional, Fitzgerald, Katherine A., additional, and O’Neill, Luke A.J., additional
- Published
- 2007
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128. IL-33: A Sheep in Wolf’s Clothing?
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Gadina, Massimo, primary and Jefferies, Caroline A., additional
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- 2007
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129. High-throughput methods for screening liposome–macrophage cell interaction.
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Kelly, Ciara, Lawlor, Ciaran, Burke, Colin, Barlow, James W., Ramsey, Joanne M., Jefferies, Caroline, and Cryan, Sally-Ann
- Subjects
LIPOSOMES ,MACROPHAGES ,CELL communication ,MANNOSE ,CHOLESTEROL - Abstract
Carriers are often an essential element of drug delivery, bestowing attributes to their cargo such as biocompatibility, enhanced delivery, extended half-life and efficacy as well as mediating specific targeting at a tissue, cell or intracellular level. Liposomes and lipid-based carriers have been investigated for decades for this purpose, many achieving clinical approval including products such as Doxil® and Myocet™. Large-scale compound screens are routinely carried out in the field of drug discovery; however, less work has been done on harnessing high-throughput methods for carrier material screening. Screening the interaction of drug carriers and materials with cells is particularly critical for the development of emerging therapies, including biomedicines, in order to facilitate the development of safe and efficient drug products. Herein, a range of liposomes of neutral, anionic and cationic charge and others that are surface-modified with mannose residues were screened for cell interaction, toxicity and immune reactivity in THP-1-derived macrophages using a high-throughput format. Liposomes were seen to be efficacious in a concentration-dependent and, for mannosylated liposomes, mannosylated cholesterol linker length-dependent manner. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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- View/download PDF
130. Mal and MyD88: adapter proteins involved in signal transduction by Toll-like receptors
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O'Neill, Luke A. J., primary, Dunne, Aisling, additional, Edjeback, Michael, additional, Gray, Pearl, additional, Jefferies, Caroline, additional, and Wietek, Claudia, additional
- Published
- 2003
- Full Text
- View/download PDF
131. Transactivation by the p65 Subunit of NF-κB in Response to Interleukin-1 (IL-1) Involves MyD88, IL-1 Receptor-Associated Kinase 1, TRAF-6, and Rac1
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Jefferies, Caroline, primary, Bowie, Andrew, additional, Brady, Gareth, additional, Cooke, Emma-Louise, additional, Li, Xiaoxia, additional, and O'Neill, Luke A. J., additional
- Published
- 2001
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- View/download PDF
132. Fibroblast growth factor homologous factor 1 interacts with NEMO to regulate NF-kB signaling in neurons.
- Author
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König, Hans-Georg, Fenner, Beau J., Byrne, Jennifer C., Schwamborn, Robert F., Bernas, Tytus, Jefferies, Caroline A., and Prehn, Jochen H. M.
- Subjects
FIBROBLAST growth factors ,NF-kappa B ,CELLULAR signal transduction ,NEURONS ,NEUROPLASTICITY ,TRANSCRIPTION factors ,GENETIC mutation - Abstract
Neuronal survival and plasticity critically depend on constitutive activity of the transcription factor nuclear factor-kB (NF-kB). We here describe a role for a small intracellular fibroblast growth factor homologue, the fibroblast growth factor homologous factor 1 (FHF1/ FGF12), in the regulation of NF-kB activity in mature neurons. FHFs have previously been described to control neuronal excitability, and mutations in FHF isoforms give rise to a form of progressive spinocerebellar ataxia. Using a protein-array approach, we identified FHF1b as a novel interactor of the canonical NF-kB modulator IKKγ/NEMO. Co-immunoprecipitation, pull-down and GAL4-reporter experiments, as well as proximity ligation assays, confirmed the interaction of FHF1 and NEMO and demonstrated that a major site of interaction occurred within the axon initial segment. Fhf1 gene silencing strongly activated neuronal NF-kB activity and increased neurite lengths, branching patterns and spine counts in mature cortical neurons. The effects of FHF1 on neuronal NF-kB activity and morphology required the presence of NEMO. Our results imply that FHF1 negatively regulates the constitutive NF-kB activity in neurons. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
133. TLR-induced activation of Btk - Role for endosomal MHC class II molecules revealed.
- Author
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Gabhann, Joan Ní and Jefferies, Caroline A.
- Subjects
IMMUNE system ,CYTOKINES ,INFLAMMATION ,PROTEIN-tyrosine kinases ,IMMUNE response - Abstract
The article offers information on the role of MHC molecules and Toll like receptors (TLRs) in the immune system of human body. It states that TLRs are inherited immune receptors that causes the production of inflammatory cytokines. It also mentions about the importance of a nonreceptor tyrosine kinase, Bruton's tyrosine kinase (Btk) for immune response.
- Published
- 2011
- Full Text
- View/download PDF
134. Mal and MyD88: adapter proteins involved in signal transduction by Toll-like receptors.
- Author
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O'Neill, Luke A.J., Dunne, Aisling, Edjeback, Michael, Gray, Pearl, Jefferies, Caroline, and Wietek, Claudia
- Abstract
Signal transduction processes activated by Toll-like receptors (TLRs) include the important transcription factor NF-κB and 2 MAP kinases, p38 and Jun N-terminal kinase. These signals ultimately give rise to increased expression of a multitude of pro-inflammatory proteins. Receptor-proximal proteins involved in signalling by all TLRs include the adapter MyD88, 3 IRAKs (IRAK-4, IRAK and IRAK-2), Tollip, Traf-6 and TAK-1. Differences between signals generated by TLRs are emerging, with both TLR4 and TLR2 signalling requiring an additional adapter termed MyD88-adapter-like (Mal; also known as TIRAP). MyD88 and Mal both have a homologous Toll/IL-1 receptor (TIR) domain although they differ in their N-termini, with MyD88 possessing a death domain. In addition, structural models reveal marked differences in surface charges which, when taken with surface charge differences between TLR2 and TLR4 TIR domains, may indicate that TLR4 but not TLR2 recruits Mal directly. Another difference is that Mal can become phosphorylated. Future studies on Mal will reveal specificities in signal transduction by different TLRs, which may ultimately provide molecular explanations for specificities in the innate immune response to infection. [ABSTRACT FROM PUBLISHER]
- Published
- 2003
- Full Text
- View/download PDF
135. Alterations in genes associated with cytosolic RNA sensing in whole blood are associated with coronary microvascular disease in SLE.
- Author
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Huo, Lihong, Naveen Kumar, Arati, Tumurkhuu, Gantsetseg, Bose, Moumita, Berman, Daniel S., Wallace, Daniel J., Wei, Janet, Ishimori, Mariko, Bairey Merz, C. Noel, and Jefferies, Caroline
- Subjects
- *
SYSTEMIC lupus erythematosus , *CARDIAC magnetic resonance imaging , *CORONARY disease , *GENE expression , *MICROCIRCULATION disorders - Abstract
Systemic lupus erythematosus (SLE) patients are 90% women and over three times more likely to die of cardiovascular disease than women in the general population. Chest pain with no obstructive cardiac disease is associated with coronary microvascular disease (CMD), where narrowing of the small blood vessels can lead to ischemia, and frequently reported by SLE patients. Using whole blood RNA samples, we asked whether gene signatures discriminate SLE patients with coronary microvascular dysfunction (CMD) on cardiac MRI (n = 4) from those without (n = 7) and whether any signaling pathway is linked to the underlying pathobiology of SLE CMD. RNA-seq analysis revealed 143 differentially expressed (DE) genes between the SLE and healthy control (HC) groups, with virus defense and interferon (IFN) signaling being the key pathways identified as enriched in SLE as expected. We next conducted a comparative analysis of genes differentially expressed in SLE–CMD and SLE–non-CMD relative to HC samples. Our analysis highlighted differences in IFN signaling, RNA sensing and ADP-ribosylation pathways between SLE–CMD and SLE–non-CMD. This is the first study to investigate possible gene signatures associating with CMD in SLE, and our data strongly suggests that distinct molecular mechanisms underly vascular changes in CMD and non-CMD involvement in SLE. [ABSTRACT FROM AUTHOR]
- Published
- 2025
- Full Text
- View/download PDF
136. Innate Immune Dysregulation in the Development of Cardiovascular Disease in Lupus.
- Author
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Tumurkhuu, Gantsetseg, Montano, Erica, and Jefferies, Caroline
- Abstract
Purpose of Review: The systemic inflammatory nature of systemic lupus erythematosus (SLE) is patent not only in the diverse clinical manifestations of the disease but also in the increased risk of premature cardiovascular diseases (CVD). In this review, we discuss the latest findings on the key factors of the innate immune system known to play critical roles in the pathogenesis of accelerated CVD in patients with SLE and discuss the potential that immunometabolism may play a key role in this respect. Recent Findings: Recent studies exploring the association between SLE and premature CVD clearly showed that alterations of specific immune functions play a pivotal role in the increased cardiovascular morbidity and mortality in the SLE patients. Novel molecular factors such as type I interferons (IFN), dysregulated neutrophil function, and changes to cellular metabolism and metabolites are emerging as important regulators of systemic immune dysfunction and as strong risk factors for premature CVD in SLE. Summary: Although corticosteroids and cytotoxic agents can be used to effectively manage and control various lupus-related complications, to date, no drug has been proven to prevent the development of premature atherosclerosis in SLE. However, as new mechanisms underlying this complication of SLE are uncovered, such as the role of metabolism and neutrophil-driven inflammation, new avenues for therapeutic intervention are being discovered. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
137. Sexually dimorphic DNA methylation and gene expression patterns in human first trimester placenta.
- Author
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Gonzalez, Tania L., Willson, Bryn E., Wang, Erica T., Taylor, Kent D., Novoa, Allynson, Swarna, Akhila, Ortiz, Juanita C., Zeno, Gianna J., Jefferies, Caroline A., Lawrenson, Kate, Rotter, Jerome I., Chen, Yii-Der Ida, Williams III, John, Cui, Jinrui, Goodarzi, Mark O., and Pisarska, Margareta D.
- Subjects
- *
INFORMED consent (Medical law) , *CHORIONIC villus sampling , *DNA methylation , *TRANSCRIPTION factors , *FALSE discovery rate , *PREECLAMPSIA , *PREGNANCY - Abstract
Background: Fetal sex and placental development impact pregnancy outcomes and fetal–maternal health, but the critical timepoint of placenta establishment in first trimester is understudied in human pregnancies. Methods: Pregnant subjects were recruited in late first trimester (weeks 10–14) at time of chorionic villus sampling, a prenatal diagnostic test. Leftover placenta tissue was collected and stored until birth outcomes were known, then DNA and RNA were isolated from singleton, normal karyotype pregnancies resulting in live births. DNA methylation was measured with the Illumina Infinium MethylationEPIC BeadChip array (n = 56). Differential methylation analysis compared 25 females versus 31 males using a generalized linear model on 743,461 autosomal probes. Gene expression sex differences were analyzed with RNA-sequencing (n = 74). An integrated analysis was performed using linear regression to correlate gene expression and DNA methylation in 51 overlapping placentas. Results: Methylation analysis identified 151 differentially methylated probes (DMPs) significant at false discovery rate < 0.05, including 89 (59%) hypermethylated in females. Probe cg17612569 (GABPA, ATP5J) was the most significant CpG site, hypermethylated in males. There were 11 differentially methylated regions affected by fetal sex, with transcription factors ZNF300 and ZNF311 most significantly hypermethylated in males and females, respectively. RNA-sequencing identified 152 genes significantly sexually dimorphic at false discovery rate < 0.05. The 151 DMPs were associated with 18 genes with gene downregulation (P < 0.05) in the direction of hypermethylation, including 2 genes significant at false discovery rate < 0.05 (ZNF300 and CUB and Sushi multiple domains 1, CSMD1). Both genes, as well as Family With Sequence Similarity 228 Member A (FAM228A), showed significant correlation between DNA methylation and sexually dimorphic gene expression, though FAM228A DNA methylation was less sexually dimorphic. Comparison with other sex differences studies found that cg17612569 is male-hypermethylated across gestation in placenta and in human blood up to adulthood. Conclusions: Overall, sex dimorphic differential methylation with associated differential gene expression in the first trimester placenta is small, but there remain significant genes that may be regulated through methylation leading to differences in the first trimester placenta. Plain language summary: Fetal sex and placenta development affect pregnancy outcomes for both the fetus and mother throughout pregnancy, including risk of miscarriages, preterm birth, preeclampsia, and other outcomes. Epigenetics, the "overlay" of regulatory signals on DNA which affects how DNA is read, is not well understood in early pregnancy when critical placenta developments are happening that affect the rest of pregnancy. Here, we use leftover placenta biopsy samples (n = 56) donated by Cedars-Sinai patients with informed consent to learn about first trimester human placenta DNA methylation differences due to fetal sex. Out of the total 743,461 sites analyzed, we identified 151 sites significantly affected by fetal sex after correcting p-values to reduce false positives (false discovery rate < 0.05). We also performed an analysis to look at multiple sites and identified 11 regions across the genome with significant DNA methylation changes due to fetal sex. Furthermore, because DNA methylation is a regulatory mark on DNA which typically dampens gene expression, we also compared the DNA methylation sex differences to placental RNA-sequencing gene expression analysis using the same tissue from a mostly overlapping patient group (n = 74 total sequenced, n = 51 overlap). We identify 18 genes which show both significant DNA methylation differences and gene expression changes. The most significant gene was transcription factor ZNF300 with higher DNA methylation in males and reduced gene expression in males (and thus higher gene expression in females). This study identifies some sex differences that continue until later pregnancy and others that are unique to first trimester. Highlights: We identify sex differences in first trimester human placenta DNA methylation (n = 56) and total RNA-sequencing (n = 74), with a sample overlap of n = 51. At late first trimester, there are 151 differentially methylated probes (DMPs), significantly different between female and male placenta at false discovery rate < 0.05. These encompass 11 differentially methylated regions. The gene with placental DNA methylation most affected by fetal sex is transcription factor ZNF300, hypermethylated in males, and with significantly female upregulated gene expression in first trimester placenta, consistent with previous third trimester studies. In addition to ZNF300, other genes in significantly differentially methylated regions at first trimester include GABPA/ATP5J (hypermethylated in males); ZNF311, CCDC178, ATP5G2, FOXG1 (females); ZNF175 (males); SGCE (females); C6orf47-AS1/C6orf47, REC8, and FOXA1 (females). We identify 18 genes with significant fetal sex-associated changes in both placenta DNA methylation and placenta gene expression. The most significant are ZNF300, tumor suppressor CSMD1, and transcription factor ZNF311. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
138. miR-744-5p contributes to ocular inflammation in patients with primary Sjogrens Syndrome.
- Author
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Pilson, Qistina, Smith, Siobhan, Jefferies, Caroline A., Ní Gabhann-Dromgoole, Joan, and Murphy, Conor C.
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INFLAMMATION , *PATIENTS , *GENE expression , *MAGNETIC resonance imaging , *CHEMOKINES - Abstract
In primary Sjögren's syndrome (pSS) the exocrine glands become infiltrated with lymphocytes instigating severe damage to the salivary and lacrimal glands causing dry eyes and dry mouth. Previous investigations have suggested that dysregulated localized and systemic inflammation contributes to the development and pathogenesis of pSS. A miR microarray performed in primary human conjunctival epithelial cells (PECs) demonstrated significant differences in miR expression at the ocular surface between pSS patients and healthy controls. MicroRNA-744-5p (miR-744-5p) was identified as being of particular interest, as its top predicted target is Pellino3 (PELI3), a known negative regulator of inflammation. Validation studies confirmed that miR-744-5p expression is significantly increased in PECs from pSS patients, whilst PELI3 was significantly reduced. We validated the miR-744 binding site in the 3' untranslated region (UTR) of PELI3 and demonstrated that increasing PELI3 levels with a miR-744-5p antagomir in an inflammatory environment resulted in reduced levels of IFN dependent chemokines Rantes (CCL5) and CXCL10. These results reveal a novel role for miR-744-5p in mediating ocular inflammation via Pellino3 expression in pSS patients and suggest that miR-744-5p may be a potential therapeutic target for the management of severe dry eye disease and ocular inflammation in pSS patients. [ABSTRACT FROM AUTHOR]
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- 2020
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139. α‐Ketoglutarate–Dependent KDM6 Histone Demethylases and Interferon‐Stimulated Gene Expression in Lupus.
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Montano, Erica N., Bose, Moumita, Huo, Lihong, Tumurkhuu, Gantsetseg, De Los Santos, Gabriela, Simental, Brianna, Stotland, Aleksandr B., Wei, Janet, Bairey Merz, C. Noel, Suda, Jo, Martins, Gislaine, Lalani, Sarfaraz, Lawrenson, Kate, Wang, Yizhou, Parker, Sarah, Venuturupalli, Swamy, Ishimori, Mariko, Wallace, Daniel J., and Jefferies, Caroline A.
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- *
ANIMAL experimentation , *METABOLOMICS , *METABOLIC reprogramming , *PRECIPITIN tests , *INTERFERONS , *GENE expression , *PROTEOMICS , *TRANSFERASES , *IMMUNITY , *SYSTEMIC lupus erythematosus , *OXIDOREDUCTASES , *HISTONE deacetylase , *GLYCOGEN , *MONOCYTES , *EPIGENOMICS - Abstract
Objective: We aimed to investigate the hypothesis that interferon (IFN)–stimulated gene (ISG) expression in systemic lupus erythematosus (SLE) monocytes is linked to changes in metabolic reprogramming and epigenetic regulation of ISG expression. Methods: Monocytes from healthy volunteers and patients with SLE at baseline or following IFNα treatment were analyzed by extracellular flux analysis, proteomics, metabolomics, chromatin immunoprecipitation, and gene expression. The histone demethylases KDM6A/B were inhibited using glycogen synthase kinase J4 (GSK‐J4). GSK‐J4 was tested in pristane and resiquimod (R848) models of IFN‐driven SLE. Results: SLE monocytes had enhanced rates of glycolysis and oxidative phosphorylation compared to healthy control monocytes, as well as increased levels of isocitrate dehydrogenase and its product, α‐ketoglutarate (α‐KG). Because α‐KG is a required cofactor for histone demethylases KDM6A and KDM6B, we hypothesized that IFNα may be driving "trained immune" responses through altering histone methylation. IFNα priming (day 1) resulted in a sustained increase in the expression of ISGs in primed cells (day 5) and enhanced expression on restimulation with IFNα. Importantly, decreased H3K27 trimethylation was observed at the promoters of ISGs following IFNα priming. Finally, GSK‐J4 (KDM6A/B inhibitor) resulted in decreased ISG expression in SLE patient monocytes, as well as reduced autoantibody production, ISG expression, and kidney pathology in R848‐treated BALB/c mice. Conclusion: Our study suggests long‐term IFNα exposure alters the epigenetic regulation of ISG expression in SLE monocytes via changes in immunometabolism, a mechanism reflecting trained immunity to type I IFN. Importantly, it opens the possibility that targeting histone‐modifying enzymes, such as KDM6A/B, may reduce IFN responses in SLE. [ABSTRACT FROM AUTHOR]
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- 2024
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140. Herpes simplex virus 1 targets IRF7 via ICP0 to limit type I IFN induction.
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Shahnazaryan, David, Khalil, Rana, Wynne, Claire, Jefferies, Caroline A., Ní Gabhann-Dromgoole, Joan, and Murphy, Conor C.
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- *
HERPES simplex keratitis , *HERPES simplex virus , *ANTIVIRAL agents , *IMMUNE response , *IMMUNOGLOBULINS - Abstract
Herpes simplex keratitis (HSK), caused by herpes simplex virus type 1 (HSV-1) infection, is the commonest cause of infectious blindness in the developed world. Following infection the virus is initially suspended in the tear film, where it encounters a multi-pronged immune response comprising enzymes, complement, immunoglobulins and crucially, a range of anti-viral and pro-inflammatory cytokines. However, given that HSV-1 can overcome innate immune responses to establish lifelong latency throughout a susceptible individual's lifetime, there is significant interest in understanding the mechanisms employed by HSV-1 to downregulate the anti-viral type I interferon (IFN) mediated immune responses. This study aimed to investigate the interactions between infected cell protein (ICP)0 and key elements of the IFN pathway to identify possible novel targets that contribute to viral immune evasion. Reporter gene assays demonstrated the ability of ICP0 to inhibit type I IFN activity downstream of pathogen recognition receptors (PRRs) which are known to be involved in host antiviral defences. Further experiments identified interferon regulatory factor (IRF)7, a driver of type I IFN, as a potential target for ICP0. These findings increase our understanding of the pathogenesis of HSK and suggest IRF7 as a potential therapeutic target. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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141. High-throughput mRNA-seq atlas of human placenta shows vast transcriptome remodeling from first to third trimester†.
- Author
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Gonzalez TL, Wertheimer S, Flowers AE, Wang Y, Santiskulvong C, Clark EL, Jefferies CA, Lawrenson K, Chan JL, Joshi NV, Zhu Y, Tseng HR, Karumanchi SA, Williams Iii J, and Pisarska MD
- Subjects
- Humans, Female, Pregnancy, Adult, High-Throughput Nucleotide Sequencing, Pregnancy Trimester, Third genetics, Placenta metabolism, Transcriptome, RNA, Messenger metabolism, RNA, Messenger genetics, Pregnancy Trimester, First genetics
- Abstract
The placenta, composed of chorionic villi, changes dramatically across gestation. Understanding differences in ongoing pregnancies are essential to identify the role of chorionic villi at specific times in gestation and develop biomarkers and prognostic indicators of maternal-fetal health. The normative mRNA profile is established using next-generation sequencing of 124 first trimester and 43 third trimester human placentas from ongoing healthy pregnancies. Stably expressed genes (SEGs) not different between trimesters and with low variability are identified. Differential expression analysis of first versus third trimester adjusted for fetal sex is performed, followed by a subanalysis with 23 matched pregnancies to control for subject variability using the same genetic and environmental background. Placenta expresses 14,979 polyadenylated genes above sequencing noise (transcripts per million > 0.66), with 10.7% SEGs across gestation. Differentially expressed genes (DEGs) account for 86.7% of genes in the full cohort [false discovery rate (FDR) < 0.05]. Fold changes highly correlate between the full cohort and subanalysis (Pearson = 0.98). At stricter thresholds (FDR < 0.001, fold change > 1.5), there remains 50.1% DEGs (3353 upregulated in first and 4155 upregulated in third trimester). This is the largest mRNA atlas of healthy human placenta across gestation, controlling for genetic and environmental factors, demonstrating substantial changes from first to third trimester in chorionic villi. Specific differences and SEGs may be used to understand the specific role of the chorionic villi throughout gestation and develop first trimester biomarkers of placental health that transpire across gestation, which can be used for future development of biomarkers for maternal-fetal health., (© The Author(s) 2024. Published by Oxford University Press on behalf of Society for the Study of Reproduction. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2024
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142. High-throughput mRNA sequencing of human placenta shows sex differences across gestation.
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Flowers AE, Gonzalez TL, Wang Y, Santiskulvong C, Clark EL, Novoa A, Jefferies CA, Lawrenson K, Chan JL, Joshi NV, Zhu Y, Tseng HR, Wang ET, Ishimori M, Karumanchi SA, Williams J 3rd, and Pisarska MD
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- Humans, Female, Pregnancy, Male, RNA, Messenger metabolism, RNA, Messenger genetics, Adult, Transcriptome, Pregnancy Trimester, Third genetics, Sequence Analysis, RNA, Pregnancy Trimester, First genetics, Pregnancy Trimester, First metabolism, Placenta metabolism, Sex Characteristics, High-Throughput Nucleotide Sequencing
- Abstract
Introduction: Fetal sex affects fetal and maternal health outcomes in pregnancy, but this connection remains poorly understood. As the placenta is the route of fetomaternal communication and derives from the fetal genome, placental gene expression sex differences may explain these outcomes., Objectives: We utilized next generation sequencing to study the normal human placenta in both sexes in first and third trimester to generate a normative transcriptome based on sex and gestation., Study Design: We analyzed 124 first trimester (T1, 59 female and 65 male) and 43 third trimester (T3, 18 female and 25 male) samples for sex differences within each trimester and sex-specific gestational differences., Results: Placenta shows more significant sexual dimorphism in T1, with 94 T1 and 26 T3 differentially expressed genes (DEGs). The sex chromosomes contributed 60.6% of DEGs in T1 and 80.8% of DEGs in T3, excluding X/Y pseudoautosomal regions. There were 6 DEGs from the pseudoautosomal regions, only significant in T1 and all upregulated in males. The distribution of DEGs on the X chromosome suggests genes on Xp (the short arm) may be particularly important in placental sex differences. Dosage compensation analysis of X/Y homolog genes shows expression is primarily contributed by the X chromosome. In sex-specific analyses of first versus third trimester, there were 2815 DEGs common to both sexes upregulated in T1, and 3263 common DEGs upregulated in T3. There were 7 female-exclusive DEGs upregulated in T1, 15 female-exclusive DEGs upregulated in T3, 10 male-exclusive DEGs upregulated in T1, and 20 male-exclusive DEGs upregulated in T3., Discussion: This is the largest cohort of placentas across gestation from healthy pregnancies defining the normative sex dimorphic gene expression and sex common, sex specific and sex exclusive gene expression across gestation. The first trimester has the most sexually dimorphic transcripts, and the majority were upregulated in females compared to males in both trimesters. The short arm of the X chromosome and the pseudoautosomal region is particularly critical in defining sex differences in the first trimester placenta. As pregnancy is a dynamic state, sex specific DEGs across gestation may contribute to sex dimorphic changes in overall outcomes., Competing Interests: Declaration of competing interest The authors report no conflict of interest, (Copyright © 2024 Elsevier Ltd. All rights reserved.)
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- 2024
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143. Alterations in genes associated with cytosolic RNA sensing in whole blood are associated with coronary microvascular disease in SLE.
- Author
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Huo L, Montano E, Tumurkhuu G, Bose M, Berman DS, Wallace D, Wei J, Ishimori M, Merz CNB, and Jefferies C
- Abstract
Systemic lupus erythematosus (SLE) patients are 90% women and over three times more likely to die of cardiovascular disease than women in the general population. Chest pain with no obstructive cardiac disease is associated with coronary microvascular disease (CMD), where narrowing of the small blood vessels can lead to ischemia, and frequently reported by SLE patients. Using whole blood RNA samples, we asked whether gene signatures discriminate SLE patients with coronary microvascular dysfunction (CMD) on cardiac MRI (n=4) from those without (n=7) and whether any signaling pathway is linked to the underlying pathobiology of SLE CMD. RNA-seq analysis revealed 143 differentially expressed (DE) genes between the SLE and healthy control (HC) groups, with virus defense and interferon (IFN) signaling being the key pathways identified as enriched in SLE as expected. We next conducted a comparative analysis of genes differentially expressed in SLE-CMD and SLE-non-CMD relative to HC samples. Our analysis highlighted differences in IFN signaling, RNA sensing and ADP-ribosylation pathways between SLE-CMD and SLE-non-CMD. This is the first study to investigate possible gene signatures associating with CMD in SLE, and our data strongly suggests that distinct molecular mechanisms underly vascular changes in CMD and non-CMD involvement in SLE., Competing Interests: Competing Interest Statement: Authors declare that there are no competing interests.
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- 2024
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144. Distinct RBC alloantibody responses in type 1 interferon-dependent and -independent lupus mouse models.
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Paul K, Hernández-Armengol R, Lee JY, Chang CY, Shibata T, Yamashita M, Jefferies C, and Gibb DR
- Subjects
- Humans, Mice, Animals, Mice, Inbred MRL lpr, Erythrocytes, Disease Models, Animal, Interferons, Immunoglobulin G, Isoantibodies, Lupus Erythematosus, Systemic, Terpenes
- Abstract
During transfusion of red blood cells (RBCs), recipients are exposed to both ABO and non-ABO 'minor' antigens. RBC donor units and recipient RBCs are not routinely matched for non-ABO antigens. Thus, recipients are exposed to many RBC alloantigens that can lead to RBC alloantibody production and subsequent clinically significant hemolysis. RBC alloantibodies also significantly limit the provision of compatible RBC units for recipients. Prior studies indicate that the frequency of RBC alloimmunization is increased during inflammatory responses and in patients with autoimmune diseases. Still, mechanisms contributing to alloimmune responses in patients with autoimmunity are not well understood. More than half of adult patients with systemic lupus erythematosus (SLE) produce type 1 interferons (IFNα/β) and express IFNα/β stimulated genes (ISGs). Previously, we reported that IFNα/β promote RBC alloimmune responses in the pristane mouse model, which develops a lupus-like phenotype that is dependent on IFNα/β signaling. However, it is unclear whether IFNα/β or the lupus-like phenotype induces alloimmunization in lupus models. Therefore, we tested the hypothesis that IFNα/β promotes RBC alloimmune responses in lupus by examining alloimmune responses in IFNα/β-independent (MRL- lpr ) and IFNα/β-dependent (pristane) lupus models. Whereas pristane treatment significantly induced interferon-stimulated genes (ISGs), MRL- lpr mice produced significantly lower levels that were comparable to levels in untreated WT mice. Transfusion of murine RBCs that express the KEL antigen led to anti-KEL IgG production by pristane-treated WT mice. However, MRL- lpr mice produced minimal levels of anti-KEL IgG. Treatment of MRL-lpr mice with recombinant IFNα significantly enhanced alloimmunization. Collectively, results indicate that a lupus-like phenotype in pre-clinical models is not sufficient to induce RBC alloantibody production, and IFNα/β gene signatures may be responsible for RBC alloimmune responses in lupus mouse models. If these findings are extended to alternate pre-clinical models and clinical studies, patients with SLE who express an IFNα/β gene signature may have an increased risk of developing RBC alloantibodies and may benefit from more personalized transfusion protocols., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Paul, Hernández-Armengol, Lee, Chang, Shibata, Yamashita, Jefferies and Gibb.)
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- 2024
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145. Interaction effects of significant risk factors on low bone mineral density in ankylosing spondylitis.
- Author
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Sun W, Mu W, Jefferies C, Learch T, Ishimori M, Wu J, Yan Z, Zhang N, Tao Q, Kong W, Yan X, and Weisman MH
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- Humans, Bone Density, Risk Factors, Spondylitis, Ankylosing complications, Osteoporosis etiology, Bone Diseases, Metabolic complications
- Abstract
Background: To analyze individually and interactively critical risk factors, which are closely related to low bone mineral density (BMD) in patient with ankylosing spondylitis (AS)., Methods: A total of 249 AS patients who visited China-Japan Friendship Hospital were included in this training set. Patients with questionnaire data, blood samples, X-rays, and BMD were collected. Logistic regression analysis was employed to identify key risk factors for low BMD in different sites, and predictive accuracy was improved by incorporating the selected significant risk factors into the baseline model, which was then validated using a validation set. The interaction between risk factors was analyzed, and predictive nomograms for low BMD in different sites were established., Results: There were 113 patients with normal BMD, and 136 patients with low BMD. AS patients with hip involvement are more likely to have low BMD in the total hip, whereas those without hip involvement are more prone to low BMD in the lumbar spine. Chest expansion, mSASSS, radiographic average grade of the sacroiliac joint, and hip involvement were significantly associated with low BMD of the femoral neck and total hip. Syndesmophytes, hip involvement and higher radiographic average grade of the sacroiliac joint increases the risk of low BMD of the femoral neck and total hip in an additive manner. Finally, a prediction model was constructed to predict the risk of low BMD in total hip and femoral neck., Conclusions: This study identified hip involvement was strongly associated with low BMD of the total hip in AS patients. Furthermore, the risk of low BMD of the femoral neck and total hip was found to increase in an additive manner with the presence of syndesmophytes, hip involvement, and severe sacroiliitis. This finding may help rheumatologists to identify AS patients who are at a high risk of developing low BMD and prompt early intervention to prevent fractures., Competing Interests: The authors declare that they have no competing interests., (© 2023 Sun et al.)
- Published
- 2023
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146. Reduced left ventricular function on cardiac MRI of SLE patients correlates with measures of disease activity and inflammation.
- Author
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Hagiwara AM, Montano E, Tumurkhuu G, Bose M, Bernardo M, Berman DS, Wiens GC, Nelson MD, Wallace D, Wei J, Ishimori M, Merz CNB, and Jefferies C
- Abstract
Background: Women with SLE have an elevated risk of cardiovascular disease. Many women with SLE frequently report chest pain in the absence of obstructive coronary artery disease (CAD) due to coronary microvascular dysfunction (CMD), a form of ischemia with no obstructive CAD. Echocardiographic studies have shown that SLE patients have reduced left ventricular (LV) function, which may also correlate with higher SLE disease activity scores. As such, we used cardiac magnetic resonance imaging (cMRI) to investigate the relationship between SLE, related inflammatory biomarkers, and cardiac function in female SLE patients., Methods: We performed stress cMRI in women with SLE and chest pain with no obstructive CAD (n=13, all met ACR 1997 criteria,) and reference controls (n=22) using our published protocol. We evaluated LV function, tissue characterization (T1 mapping, ECV), and delayed enhancement, using CV142 software (Circle Cardiovascular Imaging Inc, Calgary, AB, Canada). Myocardial perfusion reserve index (MPRI) was calculated using our published protocol. SLEDAI and SLICC Damage Index (DI) were calculated per validated criteria. Serum samples were analyzed for inflammatory markers and autoantibodies. Wilcoxon rank-sum test was performed on clinical values with CMD and no CMD SLE subjects, and on cMRI values with all SLE subjects and controls. Correlation analysis was done on clinical values, and cMRI values on all SLE subjects., Results: Overall, 40% of SLE subjects had MPRI values < 1.84, consistent with CMD. Compared to controls, SLE subjects had significantly lower LVEF, and higher LVESVi and LVMi. Corresponding to this, radial, longitudinal, and circumferential strain were significantly lower in the SLE subjects. In correlation analysis of serum inflammatory biomarkers to cMRI values in the SLE subjects, SLICC DI was related to worse cardiac function (lower radial, circumferential and longitudinal strain) and higher T1 time. Additionally, fasting insulin and ESR were negatively correlated with LVMi. Fasting insulin also negatively correlated with ECV. CRP had a positive association with LVESV index and CI and a negative association with longitudinal strain., Conclusions: Among women with SLE with chest pain and no obstructive CAD, 40% have CMD. While evaluations of known inflammatory markers (such as CRP and ESR) predictably correlated with decreased cardiac function, our study found that decreased fasting insulin levels as a novel marker of diminished LV function. In addition, low insulin levels were observed to correlate with increased LVMi and ECV, suggesting a cardioprotective effect of insulin in SLE patients. We also noted that SLICC DI, an assessment of SLE damage, correlates with cardiac dysfunction in SLE. Our findings underline the potential of non-invasive cMRI as a tool for monitoring cardiovascular function in SLE, particularly in patients with high SLICC DI, ESR and CRP and low fasting insulin levels., Competing Interests: The authors have no disclosures to report.
- Published
- 2023
- Full Text
- View/download PDF
147. High-throughput mRNA-seq atlas of human placenta shows vast transcriptome remodeling from first to third trimester.
- Author
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Gonzalez TL, Wertheimer S, Flowers AE, Wang Y, Santiskulvong C, Clark EL, Jefferies CA, Lawrenson K, Chan JL, Joshi NV, Zhu Y, Tseng HR, Karumanchi SA, Williams J, and Pisarska MD
- Abstract
Background: The placenta, composed of chorionic villi, changes dramatically across gestation. Understanding differences in ongoing pregnancies are essential to identify the role of chorionic villi at specific times in gestation and develop biomarkers and prognostic indicators of maternal- fetal health., Methods: The normative mRNA profile is established using next-generation sequencing of 124 first trimester and 43 third trimester human placentas from ongoing healthy pregnancies. Stably expressed genes not different between trimesters and with low variability are identified. Differential expression analysis of first versus third trimester adjusted for fetal sex is performed, followed by a subanalysis with 23 matched pregnancies to control for subject variability using the same genetic and environmental background., Results: Placenta expresses 14,979 mRNAs above sequencing noise (TPM>0.66), with 1,545 stably expressed genes across gestation. Differentially expressed genes account for 86.7% of genes in the full cohort (FDR<0.05). Fold changes highly correlate between the full cohort and subanalysis (Pearson = 0.98). At stricter thresholds (FDR<0.001, fold change>1.5), there are 6,941 differentially expressed protein coding genes (3,206 upregulated in first and 3,735 upregulated in third trimester)., Conclusion: This is the largest mRNA atlas of healthy human placenta across gestation, controlling for genetic and environmental factors, demonstrating substantial changes from first to third trimester in chorionic villi. Specific differences and stably expressed genes may be used to understand the specific role of the chorionic villi throughout gestation and develop first trimester biomarkers of placental health that transpire across gestation, which can be used for future development of biomarkers in maternal-fetal disease.
- Published
- 2023
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148. Macrophage fumarate hydratase restrains mtRNA-mediated interferon production.
- Author
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Hooftman A, Peace CG, Ryan DG, Day EA, Yang M, McGettrick AF, Yin M, Montano EN, Huo L, Toller-Kawahisa JE, Zecchini V, Ryan TAJ, Bolado-Carrancio A, Casey AM, Prag HA, Costa ASH, De Los Santos G, Ishimori M, Wallace DJ, Venuturupalli S, Nikitopoulou E, Frizzell N, Johansson C, Von Kriegsheim A, Murphy MP, Jefferies C, Frezza C, and O'Neill LAJ
- Subjects
- Humans, Argininosuccinate Synthase metabolism, Argininosuccinic Acid metabolism, Aspartic Acid metabolism, Cell Respiration, Cytosol metabolism, Fumarates metabolism, Lipopolysaccharides pharmacology, Lipopolysaccharides metabolism, Lupus Erythematosus, Systemic enzymology, Membrane Potential, Mitochondrial, Metabolomics, Fumarate Hydratase antagonists & inhibitors, Fumarate Hydratase genetics, Fumarate Hydratase metabolism, Interferon-beta biosynthesis, Interferon-beta immunology, Macrophages enzymology, Macrophages immunology, Macrophages metabolism, Mitochondria genetics, Mitochondria metabolism, RNA, Mitochondrial metabolism
- Abstract
Metabolic rewiring underlies the effector functions of macrophages
1-3 , but the mechanisms involved remain incompletely defined. Here, using unbiased metabolomics and stable isotope-assisted tracing, we show that an inflammatory aspartate-argininosuccinate shunt is induced following lipopolysaccharide stimulation. The shunt, supported by increased argininosuccinate synthase (ASS1) expression, also leads to increased cytosolic fumarate levels and fumarate-mediated protein succination. Pharmacological inhibition and genetic ablation of the tricarboxylic acid cycle enzyme fumarate hydratase (FH) further increases intracellular fumarate levels. Mitochondrial respiration is also suppressed and mitochondrial membrane potential increased. RNA sequencing and proteomics analyses demonstrate that there are strong inflammatory effects resulting from FH inhibition. Notably, acute FH inhibition suppresses interleukin-10 expression, which leads to increased tumour necrosis factor secretion, an effect recapitulated by fumarate esters. Moreover, FH inhibition, but not fumarate esters, increases interferon-β production through mechanisms that are driven by mitochondrial RNA (mtRNA) release and activation of the RNA sensors TLR7, RIG-I and MDA5. This effect is recapitulated endogenously when FH is suppressed following prolonged lipopolysaccharide stimulation. Furthermore, cells from patients with systemic lupus erythematosus also exhibit FH suppression, which indicates a potential pathogenic role for this process in human disease. We therefore identify a protective role for FH in maintaining appropriate macrophage cytokine and interferon responses., (© 2023. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2023
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149. Reduced Left Ventricular Function on Cardiac MRI in SLE Patients Correlates with Measures of SLE Disease Activity and Inflammation.
- Author
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Hagiwara AM, Montano E, Tumurkhuu G, Bose M, Bernardo M, Berman DS, Wiens GC, Nelson MD, Wallace DJ, Wei J, Ishimori M, Bairey Merz CN, and Jefferies C
- Abstract
Background: Women with SLE have an elevated risk of CVD morbidity and mortality and frequently report chest pain in the absence of obstructive CAD. Echocardiographic studies often demonstrate reduced LV function, correlating with higher disease activity. We used cardiac MRI (cMRI) to investigate the relationship between SLE, related inflammatory biomarkers and cardiac function in female SLE patients., Methods: Women with SLE reporting chest pain with no obstructive CAD (n=13) and reference controls (n=22) were evaluated using stress-rest cMRI to measure LV structure, function, tissue characteristics, and myocardial perfusion reserve index (MPRI). Coronary microvascular dysfunction (CMD) was defined as MPRI <1.84. Serum samples were analyzed for inflammatory markers. Relationships between clinical and cMRI values of SLE subjects were assessed, and groups were compared., Results: 40% of SLE subjects had MPRI < 1.84 on cMRI. Compared to controls, SLE subjects had higher LV volumes and mass and lower LV systolic function. SLICC DI was related to worse cardiac function and higher T1. CRP was related to higher cardiac output and a trend to better systolic function, while ESR and fasting insulin were related to lower LV mass. Lower fasting insulin levels correlated with increased ECV., Conclusions: Among our female SLE cohort, 40% had CMD, and SLICC DI correlated with worse cardiac function and diffuse fibrosis. Higher inflammatory markers and low insulin levels may associate with LV dysfunction. Our findings underline the potential of non-invasive cMRI as a tool for monitoring cardiovascular function in SLE patients.
- Published
- 2023
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150. eNAMPT/TLR4 inflammatory cascade activation is a key contributor to SLE Lung vasculitis and alveolar hemorrhage.
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Tumurkhuu G, Casanova NG, Kempf CL, Ercan Laguna D, Camp SM, Dagvadorj J, Song JH, Reyes Hernon V, Travelli C, Montano EN, Yu JM, Ishimori M, Wallace DJ, Sammani S, Jefferies C, and Garcia JGN
- Abstract
Rationale: Effective therapies to reduce the severity and high mortality of pulmonary vasculitis and diffuse alveolar hemorrhage (DAH) in patients with systemic lupus erythematosus (SLE) is a serious unmet need. We explored whether biologic neutralization of eNAMPT (extracellular nicotinamide phosphoribosyl-transferase), a novel DAMP and Toll-like receptor 4 ligand, represents a viable therapeutic strategy in lupus vasculitis., Methods: Serum was collected from SLE subjects (n = 37) for eNAMPT protein measurements. In the preclinical pristane-induced murine model of lung vasculitis/hemorrhage, C57BL/6 J mice (n = 5-10/group) were treated with PBS, IgG (1 mg/kg), or the eNAMPT-neutralizing ALT-100 mAb (1 mg/kg, IP or subcutaneously (SQ). Lung injury evaluation (Day 10) included histology/immuno-histochemistry, BAL protein/cellularity, tissue biochemistry, RNA sequencing, and plasma biomarker assessment., Results: SLE subjects showed highly significant increases in blood NAMPT mRNA expression and eNAMPT protein levels compared to healthy controls. Preclinical pristane-exposed mice studies showed significantly increased NAMPT lung tissue expression and increased plasma eNAMPT levels accompanied by marked increases in alveolar hemorrhage and lung inflammation (BAL protein, PMNs, activated monocytes). In contrast, ALT-100 mAb-treated mice showed significant attenuation of inflammatory lung injury, alveolar hemorrhage, BAL protein, tissue leukocytes, and plasma inflammatory cytokines (eNAMPT, IL-6, IL-8). Lung RNA sequencing showed pristane-induced activation of inflammatory genes/pathways including NFkB, cytokine/chemokine, IL-1β, and MMP signaling pathways, each rectified in ALT-100 mAb-treated mice., Conclusions: These findings highlight the role of eNAMPT/TLR4-mediated inflammatory signaling in the pathobiology of SLE pulmonary vasculitis and alveolar hemorrhage. Biologic neutralization of this novel DAMP appears to serve as a viable strategy to reduce the severity of SLE lung vasculitis., Competing Interests: The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Joe G.N. Garcia, MD reports financial support and equipment, drugs, or supplies were provided by Aqualung Therapeutics, LLC. Joe G.N. Garcia, MD reports a relationship with Aqualung Therapeutics, LLC that includes: equity or stocks. Joe G.N. Garcia, MD has patent pending to Aqualung Therapeutics, LLC., (© 2022 Published by Elsevier B.V.)
- Published
- 2022
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