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Management of apex predators is among the most controversial wildlife management issues globally. In Australia, some ecologists have advocated using the dingo, Canis dingo, as a tool for conservation management, due to evidence that they suppress invasive mesopredators., Hayward & Marlow ( Journal of Applied Ecology, 51, 2014 and 835) questioned the capacity of dingoes to provide benefits to native biodiversity due to their inability to eradicate foxes and cats. They also argued that indices of abundance commonly used in studies of mesopredator release by dingoes (namely, track-based indices) invalidate the conclusions of the studies. Hayward & Marlow caution conservation practitioners against incorporating dingoes into conservation programmes., Counter to their claims, we summarise research showing that the suppression of invasive mesopredators (cf. eradication) can enhance populations of native species and is therefore a meaningful conservation objective. We highlight literature supporting the hypothesis that dingoes suppress mesopredator abundance and activity, which in turn benefits native biodiversity., We show that Hayward & Marlow overlook many studies of carnivores that show track indices capture a large amount of the variation in the density of medium- and large-sized carnivores., Synthesis and applications. Practitioners cannot afford to wait to act given the perilous state of Australia's mammal species, and we argue that the evidence is sufficiently strong to justify managing dingoes for biodiversity conservation. [ABSTRACT FROM AUTHOR]

Management agencies commonly control non-native mammalian predators to protect native prey populations, but there are few robust examples of such control enhancing native prey populations. We conducted a 9-year landscape-scale management experiment to evaluate the benefits of controlling the invasive red fox ( Vulpes vulpes ) to low densities for three native ground-dwelling mammalian prey species—common brushtail possum ( Trichosurus vulpecula ), long-nosed potoroo ( Potorous tridactylus ) and southern brown bandicoot ( Isoodon obesulus )—in south-east Australian forests. We hypothesized that sustained and spatially extensive fox control would reduce fox abundance and increase occupancy, colonization and persistence rates for all three prey species in three treatment areas relative to three non-treatment areas. There was a substantial decline in bait take by foxes in treatment areas from 2005 to 2013, and fox abundances were much lower in treatment than non-treatment areas throughout the experiment. Occupancy rates of all three native prey species increased in treatment areas relative to non-treatment areas, although the magnitude of the increase varied with species, treatment area, and time. Colonization and persistence rates were not always positive for all species and all treatment areas. Our experiment demonstrates that foxes can be reduced to, and maintained at, low abundances and that this has a generally positive effect on the occupancy by small native mammalian prey species. [ABSTRACT FROM AUTHOR]

This paper describes numerical and analytical analyses relating to the use of nonlinear four-wave mixing in a semiconductor optical amplifier medium for anticipated wavelength conversion at ultrahigh data rates of 320 and 640 Gb/s. The proposed system guidelines and design show that a maximum wavelength shift of 30 nm can be achieved at 640 Gb/s, while still maintaining an acceptable bit error rate. In addition, the impact of the pump-probe ratio and semiconductor optical amplifier bias current are investigated and the results are reported. [ABSTRACT FROM AUTHOR]

This work describes efficient and polarization insensitive, all-incoherent four-wave mixing wavelength conversion achieved within a short length of highly nonlinear fiber medium, created by using both spectrally sliced pump and probe channels from a single-amplified spontaneous emission source coupled to two narrow-band Fiber Bragg grating (FBG) filters. This simple and cost-effective scheme is capable of generating a down-converted probe channel across a 17.2-nm wavelength span, while still maintaining a high conversion efficiency of around -22 dB and an optical-signal-to-noise ratio of ~21 dB. The effects of pump power, FBG detuning, and polarization are also reported. [ABSTRACT FROM AUTHOR]

Endogenous retroviruses (ERVs) are the remnants of past retroviral infections that once invaded the host's germline and were vertically transmitted. ERV sequences have been reported in mammals, but their distribution and diversity in cervids are unclear. Using next-generation sequencing, we identified a nearly complete genome of an endogenous betaretrovirus in fallow deer (Dama dama). Further genomic analysis showed that this provirus, tentatively named cervid endogenous betaretrovirus 1 (CERV β1), has typical betaretroviral genome features (gag-pro-pol-env) and the betaretrovirus-specific dUTPase domain. In addition, CERV β1 pol sequences were detected by PCR in the six non-native deer species with wild populations in Australia. Phylogenetic analyses demonstrated that CERV β1 sequences from subfamily Cervinae clustered as sister taxa to ERV-like sequences in species of subfamily Muntiacinae. These findings, therefore, suggest that CERV β1 endogenisation occurred after the split of these two subfamilies (between 3.3 and 5 million years ago). Our results provide important insights into the evolution of betaretroviruses in cervids. [ABSTRACT FROM AUTHOR]

Although sliding window-based approaches have been quite successful in detecting objects in images, it is not a trivial problem to extend them to detecting events in videos. We propose to search for spatiotemporal paths for video event detection. This new formulation can accurately detect and locate video events in cluttered and crowded scenes, and is robust to camera motions. It can also well handle the scale, shape, and intraclass variations of the event. Compared to event detection using spatiotemporal sliding windows, the spatiotemporal paths correspond to the event trajectories in the video space, thus can better handle events composed by moving objects. We prove that the proposed search algorithm can achieve the global optimal solution with the lowest complexity. Experiments are conducted on realistic video data sets with different event detection tasks, such as anomaly event detection, walking person detection, and running detection. Our proposed method is compatible with different types of video features or object detectors and robust to false and missed local detections. It significantly improves the overall detection and localization accuracy over the state-of-the-art methods. [ABSTRACT FROM PUBLISHER]

An introduction is presented in which the editor discusses articles in the issue on the topics including introduce novel computational methods that exploit non-traditional sensors; propose novel sensors and acquisition systems; and leverage visual measurements made by unconventional sensors.

Measuring image similarity is a central topic in computer vision. In this paper, we propose to measure image similarity by learning from the online Flickr image groups. We do so by: Choosing 103 Flickr groups, building a one-versus-all multiclass classifier to classify test images into a group, taking the set of responses of the classifiers as features, calculating the distance between feature vectors to measure image similarity. Experimental results on the Corel dataset and the PASCAL VOC 2007 dataset show that our approach performs better on image matching, retrieval, and classification than using conventional visual features. To build our similarity measure, we need one-versus-all classifiers that are accurate and can be trained quickly on very large quantities of data. We adopt an SVM classifier with a histogram intersection kernel. We describe a novel fast training algorithm for this classifier: the Stochastic Intersection Kernel MAchine (SIKMA) training algorithm. This method can produce a kernel classifier that is more accurate than a linear classifier on tens of thousands of examples in minutes. [ABSTRACT FROM AUTHOR]

1. The maximum annual population growth rate ( rm) is a critical parameter in many models of wildlife dynamics and management. An important application of rm is the estimation of the maximum proportion of a population that can be removed to stop population growth ( p). 2. When rm cannot be estimated in the field, one option is to estimate it from demographic data. We evaluate the use of the relationship between rm and female age at first reproduction (α), which is independent of phylogeny, to estimate rm. We first demonstrate that the relationship between field and demographic estimates of rm is unbiased. We then show that the relationship provides an unbiased and simple method to estimate rm using data for 64 mammal species. We also show that p declines exponentially as α increases. 3. We use the fitted relationship to estimate annual rm and p for 55 mammal species in Australia and New Zealand for which there are no field estimates of rm. The estimates differ by species but have low precision (wide 95% credible intervals CIs). Our estimate of rm for the Tasmanian devil Sarcophilus harrisii is high (0·6, 95% CI: 0·05–2·39) and suggests devils would become extinct if >0·34 of the population is removed annually (e.g. by facial tumour disease). Our estimate of rm (0·77, 95% CI: 0·71–1·05) for brushtail possum Trichosurus vulpecula is much greater than published estimates and highlights the need for further field estimates of rm for the species in New Zealand. 4. Synthesis and applications. Since rm has not been estimated in the field for the majority of mammal species, our approach enables estimates with credible intervals for this important parameter to be obtained for any species for which female age at first reproduction is known. However, the estimates have wide ... [ABSTRACT FROM AUTHOR]

Edge of Light (EOL) is a rapid enhanced visual inspection technique developed by the Institute for Aerospace Research, National Research Council Canada. One application of interest is the inspection of aircraft lap joints for pillowing deformation caused by hidden corrosion. The EOL technique provides an intuitive result, which is a representation of surface topography. However, a quantitative interpretation of the inspection results is still a challenge. In this paper, the quantification of surface deformation is investigated by using a laser-displacement sensor as a calibration tool. A procedure that implements the reconstruction of the deformed surface from EOL scanning is proposed. Experimental results obtained from a pillowing simulator and a service-retired aircraft lap joint are presented in this paper to demonstrate the effectiveness of the proposed approach. [ABSTRACT FROM AUTHOR]

Abstract: Five bis(3-aryl-6,6-dimethylcyclohexadienyl)ruthenium complexes (4a–4e) are prepared by reactions between di-μ-chlorodichlorobis[(1–3η:6–8η)-2,7-dimethyl-octadienyl]diruthenium and the corresponding dienes. The larger aryl substituents increase the barrier to rotation in 4a–4e relative to bis(3-methyl-6,6-cyclohexadienyl)ruthenium (5b). The activation parameters were determined by line-shape analysis for the exchange process in 4a: ΔG † (183K), 8.0±0.2kcal/mol; ΔH †, 10.3kcal/mol; and ΔS †, 13cal/mol/K. The electronic effect of the aryl substituents on the cyclohexadienyl ligand on the oxidation potential of the complex are compared to the effect of methyl substituents. [Copyright &y& Elsevier]

Government conservation agencies in New Zealand and the Australian state of Victoria spend 20% and 4%, respectively, of their annual budgets to manage a small part of the problem caused by introduced mammals. Managers' uncertainty about the optimal strategies for applying pest control has led to major differences in management practices within the single pest control programs in both countries. Monitoring under a trial-and-error approach has not removed uncertainty but has led managers to support the application of adaptive management for their pest control Control of brushtail possums (Trichosurus vulpecula) in New Zealand and red foxes (Vulpes vulpes) in Victoria, Australia, is conducted over large areas in many operations, but individual managers apply different control regimes based on the perceived benefits and opportunity costs. We report on the processes used to set up the first adaptive management experiments in pest control in New Zealand or Australia that combine the competing models approach (used when only a single management regime can be applied at one time) with an experimental approach (made possible when different management regimes are applied simultaneously in different places) with the aim of elucidating benefits and costs of the different strategies used to control the 2 pests. [ABSTRACT FROM AUTHOR]

We present a new approach for modeling multi-modal data sets, focusing on the specific case of segmented images with associated text. Learning the joint distribution of image regions and words has many applications. We consider in detail predicting words associated with whole images (auto-annotation) and corresponding to particular image regions (region naming). Auto-annotation might help organize and access large collections of images. Region naming is a model of object recognition as a process of translating image regions to words, much as one might translate from one language to another. Learning the relationships between image regions and semantic correlates (words) is an interesting example of multi-modal data mining, particularly because it is typically hard to apply data mining techniques to collections of images. We develop a number of models for the joint distribution of image regions and words, including several which explicitly learn the correspondence between regions and words. We study multi-modal and correspondence extensions to Hofmann's hierarchical clustering/aspect model, a translation model adapted from statistical machine translation (Brown et al.), and a multi-modal extension to mixture of latent Dirichlet allocation (MoM-LDA). All models are assessed using a large collection of annotated images of real scenes. We study in depth the difficult problem of measuring performance. For the annotation task, we look at prediction performance on held out data. We present three alternative measures, oriented toward different types of task. Measuring the performance of correspondence methods is harder, because one must determine whether a word has been placed on the right region of an image. We can use annotation performance as a proxy measure, but accurate measurement requires hand labeled data, and thus must occur on a smaller scale. We show results using both an annotation proxy, and manually labeled data. [ABSTRACT FROM AUTHOR]

There is currently great interest in restoring ecosystems affected by invasive organisms. In New Zealand, deer were introduced during the nineteenth century, causing dramatic changes to the understory composition and structure of some forests. Deer prefer to browse on short tree species, mostly associated with early successional stands and moist-fertile sites, but many tall tree species are browsed only when other food sources are scarce. The government has invested heavily in control programs aimed at reducing deer numbers and thereby restoring forests to something approaching their preinvasion composition and structure, but have met with only limited success. Based on a literature review, we give several examples of situations in which deer impacts may not be reversible, including the following: (1) palatable species remaining highly browsed even at low deer densities as a result of diet switching; (2) occupation of vacated niches by plant species not eaten by deer; (3) local extinction of seed sources; (4) fundamental alterations to successional pathways; (5) shifts in ecosystem processes; (6) other exotic animals becoming naturalized and weakening the effectiveness of single-species control; and (7) exotic plants weakening the effectiveness of single-species control. We consider the contributions that scientific research can make to effective forest restoration, including empirically based forest-dynamics models that place regeneration in the context of other processes, such as disturbance, soil fertility, and multiple invasive organisms. [ABSTRACT FROM AUTHOR]

Analyzes the use of molecular orbit shift in computational chemistry. Comparison between empirical and quantum mechanical methods; Efforts to improve the problem-solving component of the advanced undergraduate spectroscopy course; Application of spectroscopy in forensic and environmental science.

Summary 1.We investigated factors hypothesized to influence introduction success and subsequent geographical range size in 52 species of bird that have been introduced to mainland Australia. 2.The 19 successful species had been introduced more times, at more sites and in greater overall numbers. Relative to failed species, successfully introduced species also had a greater area of climatically suitable habitat available in Australia, a larger overseas range size and were more likely to have been introduced successfully outside Australia. After controlling for phylogeny these relationships held, except that with overseas range size and, in addition, larger-bodied species had a higher probability of introduction success. There was also a marked taxonomic bias: gamebirds had a much lower probability of success than other species. A model including five of these variables explained perfectly the patterns in introduction success across-species. 3.Of the successful species, those with larger geographical ranges in Australia had a greater area of climatically suitable habitat, traits associated with a faster population growth rate (small body size, short incubation period and more broods per season) and a larger overseas range size. The relationships between range size in Australia, the extent of climatically suitable habitat and overseas range size held after controlling for phylogeny. 4.We discuss the probable causes underlying these relationships and why, in retrospect, the outcome of bird introductions to Australia are highly predictable. [ABSTRACT FROM AUTHOR]

Overabundant herbivorous mammals can increase the mortality rates of preferred food species, causing long-term changes to plant communities. When lethal control of the herbivore is not possible, fertility control is often advocated as a management solution. There is, however, little empirical evidence that fertility control is a viable option for managing the impacts of open populations of polygynous mammals. We evaluated the effectiveness of two long-term fertility control programs implemented to reduce overabundant koala (Phascolarctos cinereus) populations and their impacts on preferred food trees (manna gum, Eucalyptus viminalis): one in Victoria (10 years) and one in South Australia (17 years). Fertility control reduced koala recruitment such that population densities more than halved at both sites. Mortality rates of manna gum trees were significantly reduced at one site, and trees with light or moderate defoliation recovered at both sites. Relationships between koala population density and canopy defoliation suggest that if management wishes to alleviate moderate browsing pressure then koala density should be maintained below 1.0 koala/ha. We conclude that population-level fertility control can significantly reduce overabundant koala populations and some of their impacts on food trees. Our empirical study demonstrates that long-term fertility control can reduce the undesirable impacts of open populations of polygynous mammals. [ABSTRACT FROM AUTHOR]

Since deer were introduced into Australia in the mid-1800s, their wild populations have increased in size and distribution, posing a potential risk to the livestock industry, through their role in pathogen transmission cycles. In comparison to livestock, there are limited data on viral infections in all wildlife, including deer. The aim of this study was to assess blood samples from wild Australian deer for serological evidence of exposure to relevant viral livestock diseases. Blood samples collected across eastern Australia were tested by ELISA to detect antigens and antibodies against Pestivirus and antibodies against bovine herpesvirus 1. A subset of samples was also assessed by RT-PCR for Pestivirus, Simbu serogroup, epizootic hemorrhagic disease virus and bovine ephemeral fever virus. Our findings demonstrated a very low seroprevalence (3%) for ruminant Pestivirus, and none of the other viruses tested were detected. These results suggest that wild deer may currently be an incidental spill-over host (rather than a reservoir host) for Pestivirus. However, deer could be a future source of viral infections for domestic animals in Australia. Further investigations are needed to monitor pathogen activity and quantify possible future infectious disease impacts of wild deer on the Australian livestock industry. [ABSTRACT FROM AUTHOR]

Wild mammalian herbivores can compete with domestic livestock and damage other types of production systems. We reviewed damage by wild mammalian herbivores, excluding rodents, to primary production in New Zealand and assessed whether primary producers alter stocking rates in response to changes in forage availability following pest control. Given the dearth of information on the damage caused by wild mammalian herbivores to many production systems, we primarily focused on their damage to agriculture. With the exception of the substantial damage that brushtail possums (Trichosurus vulpecula) and European rabbits (Oryctolagus cuniculus) cause, there are no quantitative estimates of pasture depletion by other wild mammalian herbivores on New Zealand farmland. Estimates of dry matter consumption by wild mammalian herbivores, converted to stock unit equivalents, suggest that several species can substantially reduce stocking rates when they occur on farmland. Quantitative data on the damage they cause to horticulture and silviculture are lacking, but damage to coniferous seedlings has been recorded for possums, wallabies (Notamacropus spp.), and some species of deer (Cervus spp., Rusa spp., and Dama dama). The process that primary producers use to decide whether to control wild mammalian herbivores includes complex social and economic factors, but quantitative information is important for weighing up the expected costs and benefits of pest control. However, it is unclear how primary producers manage livestock in response to increases in forage availability following pest control. The paucity of quantitative data on wild mammalian herbivore damage to production assets is a substantial knowledge gap. Key research priorities are (i) understanding how damage varies with pest density (critical information for effective pest management) and (ii) and how primary producers alter stocking rates following reductions in pest density. [ABSTRACT FROM AUTHOR]

Flightless birds were once the largest and heaviest terrestrial fauna on many archipelagos around the world. Robust approaches for estimating their population parameters are essential for understanding prehistoric insular ecosystems and extinction processes. Body mass and population density are negatively related for extant flightless bird species, providing a method for quantifying densities and population sizes of extinct flightless species. Here we assemble an updated global data set of body mass and population densities for extant flightless birds and estimate the relationship between these variables. We use generalised least squares models that account for phylogenetic relatedness and incorporate the effects of limiting factors (e.g. habitat suitability) on population density. We demonstrate the applicability of this allometric relationship to extinct species by estimating densities for each of the nine species of moa (Dinornithiformes) and generating a combined spatially explicit map of total moa density across New Zealand. To compare our density estimates with those previously published, we summed individual species' abundances to generate a mean national density of 2.02–9.66 birds km−2 for low‐ and high‐density scenarios, respectively. Our results reconcile the extreme bimodality of previous estimates (< 2 birds km−2 and > 10 birds km−2) and are comparable to contemporary densities of large herbivorous wild mammals introduced into New Zealand about 150 yr ago. The revised moa density has little effect on the harvest rates required to bring about extinction within 150–200 yr, indicating that rapid extinction was an inevitable response to human hunting, irrespective of the initial population of moa. [ABSTRACT FROM AUTHOR]

Multi‐strain, host‐disease dynamics describe a system where multiple strains of a pathogen compete for susceptible individuals of a single host. The theoretical properties of these systems have been well studied, but there are few empirical studies in wildlife hosts.We examined the impacts of two novel strains of rabbit haemorrhagic disease virus (RHDV) recently introduced into Australia, one inadvertently (RHDV2) and one deliberately for rabbit biocontrol (RHDV‐K5), by analysing long‐term monitoring data for introduced European rabbits Oryctolagus cuniculus from 18 sites throughout Australia. We examined population‐level impacts using rabbit spotlight counts pre‐ and post‐arrival of the two strains. We also analysed serological data to determine potential interactions among the introduced and existing field strains of RHDV, as well as a pre‐existing benign strain of calicivirus (RCV‐A1).Serological analyses suggested that RHDV2 arrived in Australia during spring 2014 and spread rapidly through the Australian rabbit population within 2 years. Following the establishment of RHDV2, rabbit abundance was reduced by an average of 60%, with impacts most pronounced in South and Western Australia. In contrast, the deliberate release of RHDV‐K5 had little impact on rabbit populations.Although RHDV2 has spread rapidly throughout Australia, our serological analyses do not support the observation that RHDV2 is rapidly replacing existing field strains of RHDV, as was previously reported in Australia and Europe. Nevertheless, RHDV2 has negatively impacted the ability of RHDV and RCV‐A1 to spread within rabbit populations, most likely due to its ability to infect juvenile rabbits, thereby removing them from the pool of susceptible individuals available to be infected by competing strains.Synthesis and applications. The impact of the release of a novel strain of rabbit haemorrhagic disease virus (RHDV‐K5) for rabbit biocontrol in Australia has been suppressed by the emergence of a competing strain, RHDV2. Hence, the success of further releases of similar RHDV strains for rabbit biocontrol appears doubtful. Despite this, RHDV2 has suppressed rabbit abundances by an average of 60%, with impacts most pronounced in South and Western Australia. Whether the incursion of RHDV2 leads to the competitive exclusion of other endemic RHDV strains remains to be resolved. However, the existence of partial cross‐immunity could allow some level of coexistence between RHDV2 and RHDV strains, at least in the medium term. [ABSTRACT FROM AUTHOR]

Conserving large carnivores is controversial because they can threaten wildlife, human safety, and livestock production. Since large carnivores often have large ranges, effective management requires knowledge of how their ecology and functional roles vary biogeographically.We examine continental‐scale patterns in the diet of the dingo – Australia's largest terrestrial mammalian predator. We describe and quantify how dingo dietary composition and diversity vary with environmental productivity and across five bioclimatic zones: arid, semi‐arid, tropical, sub‐tropical, and temperate.Based on 73 published and unpublished data sets from throughout the continent, we used multivariate linear modelling to assess regional trends in the occurrence of nine food groups (arthropods, birds, reptiles, European rabbits Oryctolagus cuniculus, medium‐sized [25–125 kg] and large [169–825 kg] exotic ungulates [including livestock], and other small [<0.5 kg], medium‐sized [0.5–6.9 kg] and large [≥7 kg] mammals) in dingo diets. We also assessed regional patterns in the dietary occurrence of livestock and the relationship between dietary occurrence of rabbits and small, medium‐sized and large mammals.Dingoes eat at least 229 vertebrate species (66% mammals, 22% birds, 11% reptiles, and 1% other taxa). Dietary composition varied across bioclimatic zones, with dingo diets in the arid and semi‐arid zones (low‐productivity sites) having the highest occurrence of arthropods, reptiles, birds, and rabbits. Medium‐sized mammals occurred most frequently in temperate and sub‐tropical zone diets (high‐productivity sites), large mammals least in the arid and sub‐tropical zones, and livestock most in the arid and tropical zones. The frequency of rabbits in diets was negatively correlated with that of medium‐sized, but not small or large mammals.Dingoes have a flexible and generalist diet that differs among bioclimatic zones and with environmental productivity in Australia. Future research should focus on examining how dingo diets are affected by local prey availability and human‐induced changes to prey communities. [ABSTRACT FROM AUTHOR]

We present an object relighting system that allows an artist to select an object from an image and insert it into a target scene. Through simple interactions, the system can adjust illumination on the inserted object so that it appears naturally in the scene. To support image-based relighting, we build object model from the image, and propose a perceptually-inspired approximate shading model for the relighting. It decomposes the shading field into (a) a rough shape term that can be reshaded, (b) a parametric shading detail that encodes missing features from the first term, and (c) a geometric detail term that captures fine-scale material properties. With this decomposition, the shading model combines 3D rendering and image-based composition and allows more flexible compositing than image-based methods. Quantitative evaluation and a set of user studies suggest our method is a promising alternative to existing methods of object insertion. [ABSTRACT FROM AUTHOR]

Loss of dispersal typifies island biotas, but the selective processes driving this phenomenon remain contentious. This is because selection via, both indirect (e.g. relaxed selection or island syndromes) and direct (e.g. natural selection or spatial sorting) processes may be involved, and no study has yet convincingly distinguished between these alternatives. Here, we combined observational and experimental analyses of an island lizard, the Komodo dragon (Varanus komodoensis, the world's largest lizard), to provide evidence for the actions of multiple processes that could contribute to island dispersal loss. In the Komodo dragon, concordant results from telemetry, simulations, experimental translocations, mark-recapture, and gene flow studies indicated that despite impressive physical and sensory capabilities for long-distance movement, Komodo dragons exhibited near complete dispersal restriction: individuals rarely moved beyond the valleys they were born/captured in. Importantly, lizard site-fidelity was insensitive to common agents of dispersal evolution (i.e. indices of risk for inbreeding, kin and intraspecific competition, and low habitat quality) that consequently reduced survival of resident individuals. We suggest that direct selection restricts movement capacity (e.g. via benefits of spatial philopatry and increased costs of dispersal) alongside use of dispersal-compensating traits (e.g. intraspecific niche partitioning) to constrain dispersal in island species. [ABSTRACT FROM AUTHOR]

The population dynamics of island species are considered particularly sensitive to variation in environmental, demographic and/or genetic processes. However, few studies have attempted to evaluate the relative importance of these processes for key vital rates in island endemics. We integrated the results of long-term capture-mark-recapture analysis, prey surveys, habitat quality assessments and molecular analysis to determine the causes of variation in the survival rates of Komodo dragons Varanus komodoensis at 10 sites on four islands in Komodo National Park, Indonesia. Using open population capture-mark-recapture methods, we ranked competing models that considered environmental, ecological, genetic and demographic effects on site-specific Komodo dragon survival rates. Site-specific survival rates ranged from 0.49 (95% CI: 0.33-0.68) to 0.92 (0.79-0.97) in the 10 study sites. The three highest-ranked models (i.e. ΔQAIC c < 2) explained ∼70% of variation in Komodo dragon survival rates and identified interactions between inbreeding coefficients, prey biomass density and habitat quality as important explanatory variables. There was evidence of additive effects from ecological and genetic (e.g. inbreeding) processes affecting Komodo dragon survival rates. Our results indicate that maintaining high ungulate prey biomass and habitat quality would enhance the persistence of Komodo dragon populations. Assisted gene flow may also increase the genetic and demographic viability of the smaller Komodo dragon populations. [ABSTRACT FROM AUTHOR]

This paper details a proposal and successful demonstration of an ultra-narrow and very high optical signal-to-noise ratio wavelength converted channel that was generated from an efficient ultra-narrow pre-spectrum sliced probe channel via four-wave mixing in a highly non-linear fiber medium. An array of narrowband fiber Bragg grating filters acted as a discriminative component to pre-spectrum slice the probe channel from backward amplified spontaneous emission, which, in turn, induced an additional fiber Bragg grating filtering mechanism within an erbium-doped fiber medium in a saturable configuration. A resultant optical signal-to-noise ratio of more than 70 dB in the probe channel gave rise to a 40 dB optical signal-to-noise ratio in the converted channel. These outcomes indicate the proposed scheme is highly suitable for practical, cost-effective wavelength conversion in any “pre-spectrum sliced” optical communication system. [ABSTRACT FROM AUTHOR]

The ecological impacts of feral pigs (Sus scrofa) are of concern in many places around the world. One noticeable impact is soil disturbance, although the causes and consequences are often unclear. We measured the effect of ground disturbance by feral pigs on seedling recruitment and soil ecology over 25 months on a forested riparian terrace at Waitutu, south Fiordland, New Zealand, and assessed the diet of pigs from the area from stomach contents of animals shot by hunters. Foraging by feral pigs for below-ground food disturbed between 7.4% and 12.4% of the soil. Pigs were seven times more likely to redisturb a site than to disturb a new site. Below-ground food items constituted a third of pigs' diet and were dominated by stag beetle larvae. Sites disturbed by feral pigs had shorter seedlings compared with undisturbed sites, but this was due to pigs' choice of sites rather than a consequence of the disturbance. Net temporal changes in density and height of seedlings were similarly slow in both disturbed and undisturbed sites. The basal respiration of microbes in soils recently disturbed by pigs was significantly higher than that for undisturbed soils. There was a suggestion that disturbed soils had higher ratios of fungi to bacteria than undisturbed soils (P = 0.06). This may reflect either disturbance favouring fungi over bacteria or selection of sites with more fungi or more of their main prey, the fungivorous stag beetle Dorcus helmsii. Our results indicate that pigs disturb soil primarily to forage for food and that the consequences of disturbance for seedling regeneration and soil ecology are limited or neutral. The consequences of ground disturbance and predation for populations of animal prey, such as the stag beetles, require further investigation. [ABSTRACT FROM AUTHOR]

Identifying species occupying an area is essential for many ecological and conservation studies. Faecal DNA is a potentially powerful method for identifying cryptic mammalian species. In New Zealand, 10 species of ungulate (Order: Artiodactyla) have established wild populations and are managed as pests because of their impacts on native ecosystems. However, identifying the ungulate species present within a management area based on pellet morphology is unreliable. We present a method that enables reliable identification of 10 ungulate species (red deer, sika deer, rusa deer, fallow deer, sambar deer, white-tailed deer, Himalayan tahr, Alpine chamois, feral sheep, and feral goat) from swabs of faecal pellets. A high resolution melting (HRM) assay, targeting a fragment of the 12S rRNA gene, was developed. Species-specific primers were designed and combined in a multiplex PCR resulting in fragments of different length and therefore different melting behaviour for each species. The method was developed using tissue from each of the 10 species, and was validated in blind trials. Our protocol enabled species to be determined for 94% of faecal pellet swabs collected during routine monitoring by the New Zealand Department of Conservation. Our HRM method enables high-throughput and cost-effective species identification from low DNA template samples, and could readily be adapted to discriminate other mammalian species from faecal DNA. [ABSTRACT FROM AUTHOR]

The article presents N. Sekar and D. Shiller overlooking a history of conservation-related animal welfare science and the integration of animal welfare science and conservation spans, and understanding and incorporating animal welfare science to benefit conservation efforts.

The use of high-throughput sequencing has facilitated virus discovery in wild animals and helped determine their potential threat to humans and other animals. We report the complete genome sequence of a novel picornavirus identified by next-generation sequencing in faeces from Australian fallow deer. Genomic analysis revealed that this virus possesses a typical picornavirus-like genomic organisation of 7554 nt with a single open reading frame (ORF) encoding a polyprotein of 2225 amino acids. Based on the amino acid identity comparison and phylogenetic analysis of the P1, 2C, 3CD, and VP1 regions, this novel picornavirus was closely related to but distinct from known bopiviruses detected to date. This finding suggests that deer/bopivirus could belong to a novel species within the genus Bopivirus, tentatively designated as "Bopivirus C". Epidemiological investigation of 91 deer (71 fallow, 14 sambar and 6 red deer) and 23 cattle faecal samples showed that six fallow deer and one red deer (overall prevalence 7.7%, 95% confidence interval [CI] 3.8–15.0%) tested positive, but deer/bopivirus was undetectable in sambar deer and cattle. In addition, phylogenetic and sequence analyses indicate that the same genotype is circulating in south-eastern Australia. To our knowledge, this study reports for the first time a deer-origin bopivirus and the presence of a member of genus Bopivirus in Australia. Further epidemiological and molecular studies are needed to investigate the geographic distribution and pathogenic potential of this novel Bopivirus species in other domestic and wild animal species. [ABSTRACT FROM AUTHOR]

Abstract: Wavelength conversion employing semiconductor optical amplifiers (SOAs) is currently one of the most attractive and promising wavelength conversion techniques for future all-optical systems. This paper investigates the comparative performances of the three most popular SOA wavelength conversion techniques; cross-gain modulation (XGM), cross-phase modulation (XPM) and four-wave mixing (FWM). The FWM wavelength converter is analyzed for two types of source; a CW and a novel spectrum-sliced source. All performances are analyzed in terms of shifted wavelength conversion efficiency, Q-factors and converted signal powers. The converters are modeled and simulated using OptSim software. It was found that XGM yields the highest conversion efficiency of 17dB, followed by XPM having 9dB. The FWM wavelength converter had the lowest conversion efficiency, around −0.7dB and −5.0dB for CW and spectrum-sliced sources respectively. [Copyright &y& Elsevier]

Monitoring the abundances of prey is important for informing the management of threatened and endangered predators. We evaluated the usefulness of faecal counts and distance sampling for monitoring the abundances of rusa deer Rusa timorensis, feral pig Sus scrofa and water buffalo Bubalus bubalis, the three key prey of the Komodo dragon Varanus komodoensis, at 11 sites on five islands in and aroundKomodoNational Park, eastern Indonesia.We used species-specific global detection functions and cluster sizes (i.e. multiple covariates distance sampling) to estimate densities of rusa deer and feral pig, but there were too few observations to estimate densities of water buffalo. Rusa deer densities varied from from 2.5 to 165.5 deer/km2 with coefficients of variation (CVs) of 15-105%. Feral pig densities varied from 0.0 to 25.2 pigs/km2 with CVs of 25-106%. There was a positive relationship between estimated faecal densities and estimated population densities for both rusa deer and feral pig: the form of the relationship was non-linear for rusa deer, but there was similar support for linear and non-linear relationships for feral pig. We found that faecal counts were more useful when ungulate densities were too low to estimate densities with distance sampling. Faecal count methods were also easier for field staff to conduct than distance sampling. Because spatial and temporal variation in ungulate density is likely to influence the population dynamics of the Komodo dragon, we recommend that annual monitoring of ungulates in and around Komodo National Park be undertaken using distance sampling and faecal counts. The relationships reported here will also be useful for managers establishing monitoring programmes for feral pig, rusa deer and water buffalo elsewhere in their native and exotic ranges. [ABSTRACT FROM AUTHOR]

Somatic growth patterns represent a major component of organismal fitness and may vary among sexes and populations due to genetic and environmental processes leading to profound differences in life-history and demography. This study considered the ontogenic, sex-specific and spatial dynamics of somatic growth patterns in ten populations of the world's largest lizard the Komodo dragon (Varanus komodoensis). The growth of 400 individual Komodo dragons was measured in a capture-mark-recapture study at ten sites on four islands in eastern Indonesia, from 2002 to 2010. Generalized Additive Mixed Models (GAMMs) and information-theoretic methods were used to examine how growth rates varied with size, age and sex, and across and within islands in relation to site-specific prey availability, lizard population density and inbreeding coefficients. Growth trajectories differed significantly with size and between sexes, indicating different energy allocation tactics and overall costs associated with reproduction. This leads to disparities in maximum body sizes and longevity. Spatial variation in growth was strongly supported by a curvilinear density-dependent growth model with highest growth rates occurring at intermediate population densities. Sex-specific trade-offs in growth underpin key differences in Komodo dragon life-history including evidence for high costs of reproduction in females. Further, inverse density-dependent growth may have profound effects on individual and population level processes that influence the demography of this species. [ABSTRACT FROM AUTHOR]

Abstract: Spectrum-slicing techniques employing incoherent light are an economic, practical and therefore attractive solution for future all-optical networks, especially for wavelength-division multiplexing (WDM) transmission systems in local area networks (LAN). However, spectrum-sliced methods exhibit a large excess intensity noise factor that limits the performance of the system. In this paper, we investigate noise suppression of spectrum-sliced incoherent light using a saturated semiconductor optical amplifier (SOA). The system incorporating the noise reducing SOA is modeled and simulated using OptSim software, and the results are compared to practical schemes from the literature. Performance comparisons are made with two different broadband sources test-beds. The characteristics of the SOA gain saturation are also presented. In both cases, it is found that a high degree of intensity noise is suppressed by the use of the non-linear gain saturation characteristics of the SOA so as to achieve better system performance. The position of a modulator in the system is also investigated in order to greatly reduce the excess intensity noise. [Copyright &y& Elsevier]

1. Prominent theories of plant defence have predicted that plants growing on nutrient-poor soils produce more phenolic defence compounds than those on richer soils. Only recently has the Protein Competition Model (PCM) of phenolic allocation suggested that N and P limitation could have different effects because the nutrients are involved in different cellular metabolic processes. 2. We extend the prediction of the PCM and hypothesize that N will have a greater influence on the production of phenolic defensive compounds than P availability, because N limitation reduces protein production and thus competition for phenylalanine, a precursor of many phenolic compounds. In contrast, P acts as a recyclable cofactor in these reactions, allowing protein and hence phenolic production to continue under low P conditions. 3. We test this hypothesis by comparing the foliar concentrations of phenolic compounds in (i) phenotypes of 21 species growing on P-rich alluvial terraces and P-depleted marine terraces in southern New Zealand, and (ii) 87 species growing under similar climates on comparatively P-rich soils in New Zealand vs. P-depleted soils in Tasmania. 4. Foliar P concentrations of plants from the marine terraces were about half those of plants from alluvial soils, and much lower in Tasmania than in New Zealand. However, foliar concentrations of N and phenolic compounds were similar across sites in both comparisons, supporting the hypothesis that N availability is a more important determinant of plant investment in phenolic defensive compounds than P availability. We found no indication that reduced soil P levels influenced plant concentrations of phenolic compounds. There was wide variation in the foliar N and P concentrations among species, and those with low foliar nutrient concentrations produced more phenolics (including condensed tannins). 5. Our study is the first trait comparison extending beyond standard leaf economics to include secondary metabolites related to defence in forest plants, and emphasizes that N and P have different influences on the production of phenolic defence compounds. [ABSTRACT FROM AUTHOR]

Picobirnaviruses (PBVs) have been detected in several species of animals worldwide; however, data pertaining to their presence in Australian wild and domestic animals are limited. Although PBVs are mostly found in faecal samples, their detection in blood and respiratory tract samples raises questions concerning their tropism and pathogenicity. We report here PBV detection in wild deer and cattle from southeastern Australia. Through metagenomics, the presence of PBV genogroups I (GI) and II (GII) were detected in deer serum and plasma. Molecular epidemiology studies targeting the partial RNA-dependent RNA polymerase gene were performed in a wide range of specimens (serum, faeces, spleen, lung, nasal swabs, and trachea) collected from wild deer and cattle, with PCR amplification obtained in all specimen types except lung and spleen. Our results reveal the predominance of GI and concomitant detection of both genogroups in wild deer and cattle. In concordance with other studies, the detected GI sequences displayed high genetic diversity, however in contrast, GII sequences clustered into three distinct clades. Detection of both genogroups in the upper respiratory tract (trachea and nasal swab) of deer in the present study gives more evidence about the respiratory tract tropism of PBV. Although much remains unknown about the epidemiology and tropism of PBVs, our study suggests a wide distribution of these viruses in southeastern Australia. [ABSTRACT FROM AUTHOR]