132 results on '"Faraji, Farhoud"'
Search Results
102. Endoscopic orbital exenteration in the treatment of acute invasive fungal sinusitis
- Author
-
Jumaily, Mejd, primary, Faraji, Farhoud, additional, and Brunworth, Joseph D., additional
- Published
- 2016
- Full Text
- View/download PDF
103. Isolated craniopharyngioma in the nasal cavity
- Author
-
Patel, Kunjan B., primary, Faraji, Farhoud, additional, Phillips, Nancy, additional, and Brunworth, Joseph D., additional
- Published
- 2016
- Full Text
- View/download PDF
104. Functional Analysis of Prognostic Gene Expression Network Genes in Metastatic Breast Cancer Models
- Author
-
Geiger, Thomas R., primary, Ha, Ngoc-Han, additional, Faraji, Farhoud, additional, Michael, Helen T., additional, Rodriguez, Loren, additional, Walker, Renard C., additional, Green, Jeffery E., additional, Simpson, R. Mark, additional, and Hunter, Kent W., additional
- Published
- 2014
- Full Text
- View/download PDF
105. An integrated systems genetics screen reveals the transcriptional structure of inherited predisposition to metastatic disease
- Author
-
Faraji, Farhoud, primary, Hu, Ying, additional, Wu, Gang, additional, Goldberger, Natalie E., additional, Walker, Renard C., additional, Zhang, Jinghui, additional, and Hunter, Kent W., additional
- Published
- 2013
- Full Text
- View/download PDF
106. BRD4 Short Isoform Interacts with RRP1B, SIPA1 and Components of the LINC Complex at the Inner Face of the Nuclear Membrane
- Author
-
Alsarraj, Jude, primary, Faraji, Farhoud, additional, Geiger, Thomas R., additional, Mattaini, Katherine R., additional, Williams, Mia, additional, Wu, Josephine, additional, Ha, Ngoc-Han, additional, Merlino, Tyler, additional, Walker, Renard C., additional, Bosley, Allen D., additional, Xiao, Zhen, additional, Andresson, Thorkell, additional, Esposito, Dominic, additional, Smithers, Nicholas, additional, Lugo, Dave, additional, Prinjha, Rab, additional, Day, Anup, additional, Crawford, Nigel P. S., additional, Ozato, Keiko, additional, Gardner, Kevin, additional, and Hunter, Kent W., additional
- Published
- 2013
- Full Text
- View/download PDF
107. Blindness resulting from bisphosphonate-related osteonecrosis of the skull base.
- Author
-
Faraji, Farhoud, Antisdel, Jastin L., and Brunworth, Joseph D.
- Subjects
OSTEONECROSIS ,DIPHOSPHONATES ,MYELOMA proteins ,IMMUNOGLOBULIN idiotypes ,ZOLEDRONIC acid - Abstract
Bisphosphonate-related osteonecrosis of the jaw (BRONJ) is a rare, serious complication of bisphosphonate therapy. We report here a 69-year-old man with a history of multiple myeloma and 5 years of adjuvant zoledronate therapy presenting with loss of light perception, proptosis, ptosis and impaired abduction of the right eye. This patient was found to have developed an unusually severe presentation of osteomyelitis of the skull base in the setting of BRONJ that ultimately led to unilateral blindness. In this extreme case of bisphosphonate-related osteonecrosis of the skull base, we reveal the importance of early identification and treatment of these lesions. This is the first description of BRONJ-induced blindness. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
108. Cadm1 Is a Metastasis Susceptibility Gene That Suppresses Metastasis by Modifying Tumor Interaction with the Cell-Mediated Immunity
- Author
-
Faraji, Farhoud, primary, Pang, Yanli, additional, Walker, Renard C., additional, Nieves Borges, Rosan, additional, Yang, Li, additional, and Hunter, Kent W., additional
- Published
- 2012
- Full Text
- View/download PDF
109. Abstract A6: microRNA sequencing of AKXD recombinant inbred panel identifies miR-216b as a candidate metastasis suppressor in a murine model of breast cancer
- Author
-
Faraji, Farhoud, primary, Hu, Ying, additional, Goldberger, Natalie, additional, Wu, Gang, additional, Buetow, Ken H., additional, Zhang, Jinghui, additional, and Hunter, Kent W., additional
- Published
- 2012
- Full Text
- View/download PDF
110. The Comparative Usefulness of Orthostatic Testing and Tilt Table Testing in the Evaluation of Autonomic-Associated Dizziness
- Author
-
Faraji, Farhoud, primary, Kinsella, Laurence J., additional, Rutledge, Joseph C., additional, and Mikulec, Anthony A., additional
- Published
- 2011
- Full Text
- View/download PDF
111. Targeted transgene integration in plant cells using designed zinc finger nucleases
- Author
-
Cai, Charles Q., primary, Doyon, Yannick, additional, Ainley, W. Michael, additional, Miller, Jeffrey C., additional, DeKelver, Russell C., additional, Moehle, Erica A., additional, Rock, Jeremy M., additional, Lee, Ya-Li, additional, Garrison, Robbi, additional, Schulenberg, Lisa, additional, Blue, Ryan, additional, Worden, Andrew, additional, Baker, Lisa, additional, Faraji, Farhoud, additional, Zhang, Lei, additional, Holmes, Michael C., additional, Rebar, Edward J., additional, Collingwood, Trevor N., additional, Rubin-Wilson, Beth, additional, Gregory, Philip D., additional, Urnov, Fyodor D., additional, and Petolino, Joseph F., additional
- Published
- 2008
- Full Text
- View/download PDF
112. Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases
- Author
-
Doyon, Yannick, primary, McCammon, Jasmine M, additional, Miller, Jeffrey C, additional, Faraji, Farhoud, additional, Ngo, Catherine, additional, Katibah, George E, additional, Amora, Rainier, additional, Hocking, Toby D, additional, Zhang, Lei, additional, Rebar, Edward J, additional, Gregory, Philip D, additional, Urnov, Fyodor D, additional, and Amacher, Sharon L, additional
- Published
- 2008
- Full Text
- View/download PDF
113. Seed and Soil: A Conceptual Framework of Metastasis for Clinicians.
- Author
-
Faraji, Farhoud and Eissenberg, Joel C.
- Published
- 2013
114. Post-transcriptional control of tumor cell autonomous metastatic potential by the CCR4-NOT deadenylase CNOT7
- Author
-
Faraji, Farhoud, Hu, Ying, Yang, Howard H., Lee, Maxwell P., Winkler, G. Sebastiaan, Hafner, Markus, Hunter, Kent W., Faraji, Farhoud, Hu, Ying, Yang, Howard H., Lee, Maxwell P., Winkler, G. Sebastiaan, Hafner, Markus, and Hunter, Kent W.
- Abstract
Accumulating evidence supports the role of an aberrant transcriptome as a driver of metastatic potential. Deadenylation is a general regulatory node for post-transcriptional control by microRNAs and other determinants of RNA stability. Previously, we demonstrated that the CCR4-NOT scaffold component Cnot2 is an inherited metastasis susceptibility gene. In this study, using orthotopic metastasis assays and genetically engineered mouse models, we show that one of the enzymatic subunits of the CCR4-NOT complex, Cnot7, is also a metastasis modifying gene. We demonstrate that higher expression of Cnot7 drives tumor cell autonomous metastatic potential, which requires its deadenylase activity. Furthermore, metastasis promotion by CNOT7 is dependent on interaction with CNOT1 and TOB1. CNOT7 ribonucleoprotein-immunoprecipitation (RIP) and integrated transcriptome wide analyses reveal that CNOT7-regulated transcripts are enriched for a tripartite 3’UTR motif bound by RNA-binding proteins known to complex with CNOT7, TOB1, and CNOT1. Collectively, our data support a model of CNOT7, TOB1, CNOT1, and RNA-binding proteins collectively exerting post-transcriptional control on a metastasis suppressive transcriptional program to drive tumor cell metastasis.
- Full Text
- View/download PDF
115. Simulation‐based workshop for emergency preparedness in otolaryngology.
- Author
-
La Monte, Olivia A., Lee, Jason Han, Soliman, Shady I., Saddawi‐Konefka, Robert, Harris, Jeffrey P., Coffey, Charles S., Orosco, Ryan K., Watson, Deborah, Holliday, Michael A., Faraji, Farhoud, and Hom, David B.
- Subjects
- *
RESIDENTS (Medicine) , *MOTOR ability , *OTOLARYNGOLOGY , *LIKERT scale , *PATIENT safety - Abstract
Objectives: This study aimed to evaluate the outcomes of a hands‐on simulation‐based course with emphasis on procedural techniques, clinical reasoning, and communication skills developed to improve junior Otolaryngology – Head and Neck Surgery (OHNS) residents' preparedness in managing otolaryngologic emergencies. Methods: Junior OHNS residents and faculty from residency programs in California, Nevada, and Arizona participated in this workshop in 2020 and 2021. The stations featured airway management techniques, ultrasound‐guided needle aspiration, nasoseptal hematoma evacuation, and facial fracture repair using various models and cadavers. Participants completed a pre‐workshop survey, post‐workshop survey, and 2‐month follow‐up survey that assessed resident anxiety and confidence in three OHNS emergency situations across knowledge, manual skills, and teamwork using a 5‐point Likert scale. Results: Pre‐workshop surveys reported the least anxiety and most confidence in teamwork, but the most anxiety and least confidence in technical skills and knowledge related to foreign body retrieval and airway management. Immediately post‐workshop participants reported significant reductions in anxiety and increases in confidence, largest in the manual skills domain, in foreign body retrieval (anxiety: −0.99, confidence: +0.95, p <.01) and airway management stations (anxiety: −0.68, confidence: +1.07, p <.01). Data collected for the epistaxis station showed decreasing confidence and increasing anxiety following the workshop. Conclusion: Our findings demonstrate the effectiveness of a workshop in preparing junior residents in potentially lifesaving otolaryngologic techniques that residents will encounter. Optimizing use of simulation centered training can inform the future of residency education, improving confidence and decreasing anxiety in residents responsible for the safety of patients. Level of Evidence: III. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
116. Positive Margin Rates in Oral Cavity and Oropharyngeal Malignancies: A National Analysis.
- Author
-
Sharma RK, Orosco RK, Philips R, Faraji F, Esce AR, and Topf MC
- Abstract
Objective: Oral cavity malignancies (OCC) and oropharyngeal malignancies (OPC) historically have higher rates of positive surgical margins (PSM) compared to other solid malignancies. The objective of this study is to understand trends and predictors in positive surgical margins (PSM) for OPSCC and OCSCC using the National Cancer Database (NCDB)., Study Design: Retrospective Cohort Study., Setting: National Cancer Database., Methods: Retrospective analysis of patients with OCC and OPC between 2004 and 2020 in the NCDB. Linear regression analysis between PSM rates and year was performed. Multivariable logistic regression was used to investigate the effect of the year of diagnosis on PSM after adjusting for patient, tumor, and healthcare system-related factors., Results: We analyzed 60,695 patients with OCC and 31,950 patients with OPC. Overall PSM rate was 16.1% in OCC and 33.1% in OPC. OCC PSM rate decreased from 17.7% in 2004 to 15.8% in 2020. OPC PSM rate decreased from 32.5% to 25.0%. Later date of diagnosis was associated with a reduction in positive margins for both OCC (odds ratio [OR] 0.99, 95% confidence interval [CI] 0.99-1.0, P < .001) and OPC (0.99, 0.98-0.99, P < .001). For patients with available minimally-invasive surgery data, both later year of diagnosis (0.95, 0.93-0.96, P < .001) and use of minimally-invasive techniques (0.830, 0.75-0.92, P < .001) were associated with a reduction in PSM in OPC., Conclusion: Positive margins for OCC/OPC have been decreasing over the past 2 decades. Robot use has been associated with a reduced PSM rate in OPC. Understanding factors that may contribute to trends in PSM is important in promoting continued improvement., (© 2024 American Academy of Otolaryngology–Head and Neck Surgery Foundation.)
- Published
- 2024
- Full Text
- View/download PDF
117. Early antiviral CD4+ and CD8+ T cells are associated with upper airway clearance of SARS-CoV-2.
- Author
-
Ramirez SI, Lopez PG, Faraji F, Parikh UM, Heaps A, Ritz J, Moser C, Eron JJ, Wohl D, Currier J, Daar ES, Greninger A, Klekotka P, Grifoni A, Weiskopf D, Sette A, Peters B, Hughes MD, Chew KW, Smith DM, and Crotty S
- Subjects
- Humans, Middle Aged, Adult, Aged, Male, Female, Aged, 80 and over, Young Adult, Adolescent, Antibodies, Viral immunology, RNA, Viral, Antibodies, Neutralizing immunology, COVID-19 immunology, COVID-19 virology, CD8-Positive T-Lymphocytes immunology, SARS-CoV-2 immunology, CD4-Positive T-Lymphocytes immunology
- Abstract
T cells are involved in protective immunity against numerous viral infections. Data regarding functional roles of human T cells in SARS-CoV-2 (SARS2) viral clearance in primary COVID-19 are limited. To address this knowledge gap, we assessed samples for associations between SARS2 upper respiratory tract viral RNA levels and early virus-specific adaptive immune responses for 95 unvaccinated clinical trial participants with acute primary COVID-19 aged 18-86 years old, approximately half of whom were considered at high risk for progression to severe COVID-19. Functionality and magnitude of acute SARS2-specific CD4+ and CD8+ T cell responses were evaluated, in addition to antibody responses. Most individuals with acute COVID-19 developed SARS2-specific T cell responses within 6 days of COVID-19 symptom onset. Early CD4+ T cell and CD8+ T cell responses were polyfunctional, and both strongly associated with reduced upper respiratory tract SARS2 viral RNA, independent of neutralizing antibody titers. Overall, these findings provide evidence for protective roles for circulating SARS2-specific CD4+ and CD8+ T cells during acute COVID-19.
- Published
- 2024
- Full Text
- View/download PDF
118. Author Correction: Immunological memory diversity in the human upper airway.
- Author
-
Ramirez SI, Faraji F, Hills LB, Lopez PG, Goodwin B, Stacey HD, Sutton HJ, Hastie KM, Saphire EO, Kim HJ, Mashoof S, Yan CH, DeConde AS, Levi G, and Crotty S
- Published
- 2024
- Full Text
- View/download PDF
119. YAP-Driven Oral Epithelial Stem Cell Malignant Reprogramming at Single Cell Resolution.
- Author
-
Faraji F, Ramirez SI, Clubb L, Sato K, Burghi V, Hoang TS, Officer A, Anguiano Quiroz PY, Galloway WM, Mikulski Z, Medetgul-Ernar K, Marangoni P, Jones KB, Molinolo AA, Kim K, Sakaguchi K, Califano JA, Smith Q, Goren A, Klein OD, Tamayo P, and Gutkind JS
- Abstract
Tumor initiation represents the first step in tumorigenesis during which normal progenitor cells undergo cell fate transition to cancer. Capturing this process as it occurs in vivo, however, remains elusive. Here we employ spatiotemporally controlled oncogene activation and tumor suppressor inhibition together with multiomics to unveil the processes underlying oral epithelial progenitor cell reprogramming into tumor initiating cells (TIC) at single cell resolution. TIC displayed a distinct stem-like state, defined by aberrant proliferative, hypoxic, squamous differentiation, and partial epithelial to mesenchymal (pEMT) invasive gene programs. YAP-mediated TIC programs included the activation of oncogenic transcriptional networks and mTOR signaling, and the recruitment of myeloid cells to the invasive front contributing to tumor infiltration. TIC transcriptional programs are conserved in human head and neck cancer and associated with poor patient survival. These findings illuminate processes underlying cancer initiation at single cell resolution, and identify candidate targets for early cancer detection and prevention.
- Published
- 2024
- Full Text
- View/download PDF
120. Early antiviral CD4 and CD8 T cell responses and antibodies are associated with upper respiratory tract clearance of SARS-CoV-2.
- Author
-
Ramirez SI, Lopez PG, Faraji F, Parikh UM, Heaps A, Ritz J, Moser C, Eron JJ, Wohl DA, Currier JS, Daar ES, Greninger AL, Klekotka P, Grifoni A, Weiskopf D, Sette A, Peters B, Hughes MD, Chew KW, Smith DM, and Crotty S
- Abstract
T cells are involved in protective immunity against numerous viral infections. Data regarding functional roles of human T cells in SARS-CoV-2 (SARS2) viral clearance in primary COVID-19 are limited. To address this knowledge gap, samples were assessed for associations between SARS2 upper respiratory tract viral RNA levels and early virus-specific adaptive immune responses for 95 unvaccinated clinical trial participants with acute primary COVID-19 aged 18-86 years old, approximately half of whom were considered high risk for progression to severe COVID-19. Functionality and magnitude of acute SARS2-specific CD4 and CD8 T cell responses were evaluated, in addition to antibody responses. Most individuals with acute COVID-19 developed SARS2-specific T cell responses within 6 days of COVID-19 symptom onset. Early CD4 T cell and CD8 T cell responses were polyfunctional, and both strongly associated with reduced upper respiratory tract SARS2 viral RNA, independent of neutralizing antibody titers. Overall, these findings provide evidence for protective roles for circulating SARS2-specific CD4 and CD8 T cells during acute COVID-19.
- Published
- 2024
- Full Text
- View/download PDF
121. Factors associated with total laryngectomy following organ-preserving treatment of laryngeal SCC.
- Author
-
Victor MT, Faraji F, Voora R, Kalavacherla S, Mell LK, Rose BS, and Guo TW
- Abstract
Objectives: A subset of laryngeal squamous cell carcinoma (LSCC) patients undergoing larynx preserving treatment ultimately require total laryngectomy (TL) for oncologic or functional reasons. This study aims to identify TL risk factors in these patients., Methods: Retrospective cohort study using Veterans Affairs (VA) database. T1-T4 LSCC cases treated with primary radiotherapy (XRT) or chemoradiotherapy (CRT) were assessed for TL and recurrence. Binary logistic and Cox regression and Kaplan-Meier analyses were implemented., Results: Of 5390 cases, 863 (16.0%) underwent TL. On multivariable analysis, age (adjusted odds ratio: 0.97 [0.96-0.98]; p < .001) and N3 disease (0.42 [0.18-1.00]; p = .050) were associated with reduced risk of TL, whereas current alcohol use (1.22 [1.04-1.43]; p = .015) and >T1 disease (T2, 1.76 [1.44-2.17]; p < .001; T3, 2.06 [1.58-2.68]; p < .001; T4, 1.79 [1.26-2.53]; p = .001) were associated with increased risk of TL. However, N2 (adjusted hazard ratio: 1.30 [1.10-1.55]; p = .003) and N3 (2.02 [1.25-3.26]; p = .004) disease were associated with an increased risk for local recurrence. Compared to XRT, treatment with CRT was associated with reduced risk for local recurrence after adjusting for other factors (0.84 [0.70-0.99]; p = .044). Those who do not receive TL following local recurrence have poorer disease-specific survival (log-rank, p < .001). In patients without local recurrence, N2 disease was associated with a fourfold increase in risk of TL (4.24 [1.83-9.82]; p < .001)., Conclusion: Advanced nodal stage was associated with reduced rates of salvage TL in the setting of local recurrence, and subsequent worse prognosis after recurrence. Conversely, advanced nodal stage may increase the risk for functional salvage TL in patients without recurrence., Level of Evidence: Level 3., Competing Interests: The authors declare no conflicts of interest., (© 2024 The Author(s). Laryngoscope Investigative Otolaryngology published by Wiley Periodicals LLC on behalf of The Triological Society.)
- Published
- 2024
- Full Text
- View/download PDF
122. Immunological memory diversity in the human upper airway.
- Author
-
Ramirez SI, Faraji F, Hills LB, Lopez PG, Goodwin B, Stacey HD, Sutton HJ, Hastie KM, Saphire EO, Kim HJ, Mashoof S, Yan CH, DeConde AS, Levi G, and Crotty S
- Subjects
- Adult, Humans, CD4-Positive T-Lymphocytes immunology, CD4-Positive T-Lymphocytes cytology, CD8-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes cytology, COVID-19 immunology, COVID-19 virology, Germinal Center immunology, Germinal Center cytology, Immunoglobulin A immunology, Plasma Cells immunology, Plasma Cells cytology, Immunologic Memory immunology, Memory B Cells immunology, Memory T Cells immunology, Nasal Mucosa immunology, Nasal Mucosa virology, Nasopharynx virology, Nasopharynx immunology, SARS-CoV-2 immunology
- Abstract
The upper airway is an important site of infection, but immune memory in the human upper airway is poorly understood, with implications for COVID-19 and many other human diseases
1-4 . Here we demonstrate that nasal and nasopharyngeal swabs can be used to obtain insights into these challenging problems, and define distinct immune cell populations, including antigen-specific memory B cells and T cells, in two adjacent anatomical sites in the upper airway. Upper airway immune cell populations seemed stable over time in healthy adults undergoing monthly swabs for more than 1 year, and prominent tissue resident memory T (TRM ) cell and B (BRM ) cell populations were defined. Unexpectedly, germinal centre cells were identified consistently in many nasopharyngeal swabs. In subjects with SARS-CoV-2 breakthrough infections, local virus-specific BRM cells, plasma cells and germinal centre B cells were identified, with evidence of local priming and an enrichment of IgA+ memory B cells in upper airway compartments compared with blood. Local plasma cell populations were identified with transcriptional profiles of longevity. Local virus-specific memory CD4+ TRM cells and CD8+ TRM cells were identified, with diverse additional virus-specific T cells. Age-dependent upper airway immunological shifts were observed. These findings provide new understanding of immune memory at a principal mucosal barrier tissue in humans., (© 2024. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2024
- Full Text
- View/download PDF
123. Molecular patterns and mechanisms of tumorigenesis in HPV-associated and HPV-independent sinonasal squamous cell carcinoma.
- Author
-
Zamuner FT, Gunti S, Starrett GJ, Faraji F, Toni T, Saraswathula A, Vu K, Gupta A, Zhang Y, Faden DL, Bryan ME, Guo T, Rowan NR, Ramanathan M, Lane AP, Fakhry C, Gallia GL, Allen CT, Rooper LM, and London NR
- Abstract
Mechanisms of tumorigenesis in sinonasal squamous cell carcinoma (SNSCC) remain poorly described due to its rare nature. A subset of SNSCC are associated with the human papillomavirus (HPV); however, it is unknown whether HPV is a driver of HPV-associated SNSCC tumorigenesis or merely a neutral bystander. We hypothesized that performing the first large high-throughput sequencing study of SNSCC would reveal molecular mechanisms of tumorigenesis driving HPV-associated and HPV-independent SNSCC and identify targetable pathways. High-throughput sequencing was performed on 64 patients with HPV-associated and HPV-independent sinonasal carcinomas. Mutation annotation, viral integration, copy number, and pathway-based analyses were performed. Analysis of HPV-associated SNSCC revealed similar mutational patterns observed in HPV-associated cervical and head and neck squamous cell carcinoma, including lack of TP53 mutations and the presence of known hotspot mutations in PI3K and FGFR3. Further similarities included enrichment of APOBEC mutational signature, viral integration at known hotspot locations, and frequent mutations in epigenetic regulators. HPV-associated SNSCC-specific recurrent mutations were also identified including KMT2C , UBXN11 , AP3S1 , MT-ND4 , and MT-ND5 . Mutations in KMT2D and FGFR3 were associated with decreased overall survival. We developed the first known HPV-associated SNSCC cell line and combinatorial small molecule inhibition of YAP/TAZ and PI3K pathways synergistically inhibited tumor cell clonogenicity. In conclusion, HPV-associated SNSCC and HPV-independent SNSCC are driven by molecularly distinct mechanisms of tumorigenesis. Combinatorial blockade of YAP/TAZ and vertical inhibition of the PI3K pathway may be useful in targeting HPV-associated SNSCC whereas targeting MYC and horizontal inhibition of RAS/PI3K pathways for HPV-independent SNSCC., One Sentence Summary: This study solidifies HPV as a driver of HPV-associated SNSCC tumorigenesis, identifies molecular mechanisms distinguishing HPV-associated and HPV-independent SNSCC, and elucidates YAP/TAZ and PI3K blockade as key targets for HPV-associated SNSCC.
- Published
- 2024
- Full Text
- View/download PDF
124. Postoperative Radiotherapy and Survival in Oral Cavity Squamous Cell Carcinoma With Mandibulectomy.
- Author
-
Harley RJ, Iheagwara UK, Faraji F, Sridharan S, and Kubik MW
- Subjects
- Humans, Male, Female, Aged, Squamous Cell Carcinoma of Head and Neck pathology, Retrospective Studies, Mandibular Osteotomy, Radiotherapy, Adjuvant, Neoplasm Staging, Carcinoma, Squamous Cell radiotherapy, Carcinoma, Squamous Cell surgery, Mouth Neoplasms radiotherapy, Mouth Neoplasms surgery, Head and Neck Neoplasms pathology
- Abstract
Importance: Oral cavity squamous cell carcinoma (SCC) tumors with mandibular invasion are upstaged to pT4a regardless of their size. Even small tumors with boney invasion, which would otherwise be classified as pT1-2, are recommended for the locally advanced treatment pathway to receive administration of postoperative radiotherapy (PORT)., Objective: To evaluate the association of PORT with overall survival according to tumor size among patients who received mandibulectomy for pT4aN0 oral cavity SCC., Design, Setting, and Participants: This was a retrospective analysis using data from the US National Cancer Database from January 1, 2004, through December 31, 2019. All patients who received mandibulectomy for treatment-naive pT4aN0 oral cavity SCC with negative surgical margins were included. Data analyses were performed in January 2023 and finalized in July 2023., Exposure: PORT vs no PORT., Main Outcomes and Measures: Entropy balancing was used to balance covariate moments between treatment groups. Weighted multivariable Cox proportional hazards regression was used to measure the association of PORT with overall survival associated with tumor size., Results: Among 3268 patients with pT4aN0 oral cavity SCC (mean [SD] age, 65.9 [12.1] years; 2024 [61.9%] male and 1244 [38.1%] female), 1851 (56.6%) received PORT and 1417 (43.4%) did not receive PORT. On multivariable analysis was adjusted for age, insurance status, Charlson Comorbidity Index score, tumor site, tumor grade, tumor size, and PORT. Findings indicated that PORT was associated with improved overall survival and that this relative survival advantage trended upwards with increasing tumor size. That is, the larger the tumor, the greater the survival advantage associated with the use of PORT. For the 1068 patients with tumors greater than 4 cm, the adjusted hazard ratio (aHR) in favor of PORT was 0.63 (95% CI, 0.48-0.82); for the 1774 patients with tumors greater than 2 cm but less than or equal to 4 cm, the aHR was 0.76 (95% CI, 0.62-0.93); and for 426 patients with tumors less than 2 cm, the aHR was 0.81 (95% CI, 0.57-1.15)., Conclusions and Relevance: In this retrospective analysis of patients who received mandibulectomy for pT4aN0 oral cavity SCC, PORT was associated with improved overall survival, the benefit of which improved relatively with increasing tumor size. These findings suggest that tumor size should be considered in guidelines for PORT administration in this patient population.
- Published
- 2024
- Full Text
- View/download PDF
125. Transoral Surgery in HPV-Positive Oropharyngeal Carcinoma: Oncologic Outcomes in the Veterans Affairs System.
- Author
-
Faraji F, Kumar A, Voora R, Soliman SI, Cherry D, Courtney PT, Finegersh A, Guo T, Cohen E, Califano JA 3rd, Mell L, Rose B, and Orosco RK
- Subjects
- Humans, Retrospective Studies, Squamous Cell Carcinoma of Head and Neck, Carcinoma, Squamous Cell pathology, Papillomavirus Infections, Veterans, Oropharyngeal Neoplasms pathology, Head and Neck Neoplasms etiology, Robotic Surgical Procedures adverse effects
- Abstract
Objectives: Most transoral robotic surgery (TORS) literature for HPV-positive oropharyngeal squamous cell carcinoma (HPV-OPC) derives from high-volume tertiary-care centers. This study aims to describe long-term recurrence and survival outcomes among Veterans Health Administration patients., Materials and Methods: Using the US Veterans Affairs database, we identified patients with HPV-OPC treated with TORS between January 2010 and December 2016. Patients were stratified in risk categories: low (0-1 metastatic nodes, negative margins), intermediate (close margins, 2-4 metastatic nodes, lymphovascular or perineural invasion, pT3-pT4 tumor), or high (positive margins, extranodal extension (ENE), and/or ≥5 metastatic nodes). Primary outcomes included overall survival (OS), disease-specific survival (DSS), and recurrence-free survival (RFS)., Results: The cohort included 161 patients of which 29 (18%) were low-risk, 45 (28%) intermediate-risk, and 87 (54%) high-risk. ENE was present in 41% of node-positive cases and 24% had positive margins. Median follow-up was 5.6 years (95% CI, 3.0-9.3). The 5-year DSS for low, intermediate, and high-risk groups were: 100%, 90.0% (95% CI, 75.4-96.1%), and 88.7% (95% CI, 78.3-94.2%). Pathologic features associated with poor DSS on univariable analysis included pT3-T4 tumors (HR 3.81, 95% CI, 1.31-11; p = 0.01), ≥5 metastatic nodes (HR 3.41, 95% CI, 1.20-11; p = 0.02), and ENE (HR 3.53, 95% CI, 1.06-12; p = 0.04). Higher 5-year cumulative incidences of recurrence were observed in more advanced tumors (pT3-T4, 33% [95% CI, 14-54%] versus pT1-T2, 13% [95% CI, 8-19%]; p = 0.01)., Conclusions: In this nationwide study, patients with HPV-OPC treated with TORS followed by adjuvant therapy at Veterans Affairs Medical Centers demonstrated favorable survival outcomes comparable to those reported in high-volume academic centers and clinical trials., Level of Evidence: 4 Laryngoscope, 134:207-214, 2024., (© 2023 The American Laryngological, Rhinological and Otological Society, Inc.)
- Published
- 2024
- Full Text
- View/download PDF
126. High-throughput chemogenetic drug screening reveals PKC-RhoA/PKN as a targetable signaling vulnerability in GNAQ-driven uveal melanoma.
- Author
-
Arang N, Lubrano S, Ceribelli M, Rigiracciolo DC, Saddawi-Konefka R, Faraji F, Ramirez SI, Kim D, Tosto FA, Stevenson E, Zhou Y, Wang Z, Bogomolovas J, Molinolo AA, Swaney DL, Krogan NJ, Yang J, Coma S, Pachter JA, Aplin AE, Alessi DR, Thomas CJ, and Gutkind JS
- Subjects
- Animals, Mice, GTP-Binding Protein alpha Subunits genetics, GTP-Binding Protein alpha Subunits metabolism, GTP-Binding Protein alpha Subunits, Gq-G11 genetics, GTP-Binding Protein alpha Subunits, Gq-G11 metabolism, GTP-Binding Protein alpha Subunits, Gq-G11 therapeutic use, Drug Evaluation, Preclinical, Protein Kinase Inhibitors pharmacology, Uveal Melanoma, Melanoma drug therapy, Melanoma genetics, Melanoma pathology, Skin Neoplasms, Uveal Neoplasms drug therapy, Uveal Neoplasms genetics, Uveal Neoplasms metabolism
- Abstract
Uveal melanoma (UM) is the most prevalent cancer of the eye in adults, driven by activating mutation of GNAQ/GNA11; however, there are limited therapies against UM and metastatic UM (mUM). Here, we perform a high-throughput chemogenetic drug screen in GNAQ-mutant UM contrasted with BRAF-mutant cutaneous melanoma, defining the druggable landscape of these distinct melanoma subtypes. Across all compounds, darovasertib demonstrates the highest preferential activity against UM. Our investigation reveals that darovasertib potently inhibits PKC as well as PKN/PRK, an AGC kinase family that is part of the "dark kinome." We find that downstream of the Gαq-RhoA signaling axis, PKN converges with ROCK to control FAK, a mediator of non-canonical Gαq-driven signaling. Strikingly, darovasertib synergizes with FAK inhibitors to halt UM growth and promote cytotoxic cell death in vitro and in preclinical metastatic mouse models, thus exposing a signaling vulnerability that can be exploited as a multimodal precision therapy against mUM., Competing Interests: Declaration of interests J.S.G. reports consulting fees from Domain Pharmaceuticals, Pangea Therapeutics, and io9 and is founder of Kadima Pharmaceuticals, all unrelated to the current study. J.S.G. and N.A. hold patent US11679113B2 related in part to this work. The Krogan Laboratory has received research support from Vir Biotechnology, F. Hoffmann-La Roche, and Rezo Therapeutics. N.J.K. has financially compensated consulting agreements with the Icahn School of Medicine at Mount Sinai, New York, Maze Therapeutics, Interline Therapeutics, Rezo Therapeutics, Gen1E Lifesciences, Inc., and Twist Bioscience Corp. He is on the Board of Directors of Rezo Therapeutics and is a shareholder in Tenaya Therapeutics, Maze Therapeutics, Rezo Therapeutics, and Interline Therapeutics. D.L.S. has a consulting agreement with Maze Therapeutics. J.B. is a consultant for Rocket Pharma. J.A.P. and S.C. are employees of Verastem, which has not influenced this study. Other authors declare no competing financial interests., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
127. YAP-Driven Malignant Reprogramming of Epithelial Stem Cells at Single Cell Resolution.
- Author
-
Gutkind JS, Faraji F, Ramirez S, Clubb L, Sato K, Quiroz PA, Galloway W, Mikulski Z, Hoang T, Medetgul-Ernar K, Marangoni P, Jones K, Officer A, Molinolo A, Kim K, Sakaguchi K, Califano J, Smith Q, Klein O, and Tamayo P
- Abstract
Tumor initiation represents the first step in tumorigenesis during which normal progenitor cells undergo cell fate transition to cancer. Capturing this process as it occurs in vivo , however, remains elusive. Here we employ cell tracing approaches with spatiotemporally controlled oncogene activation and tumor suppressor inhibition to unveil the processes underlying oral epithelial progenitor cell reprogramming into cancer stem cells (CSCs) at single cell resolution. This revealed the rapid emergence of a distinct stem-like cell state, defined by aberrant proliferative, hypoxic, squamous differentiation, and partial epithelial to mesenchymal (pEMT) invasive gene programs. Interestingly, CSCs harbor limited cell autonomous invasive capacity, but instead recruit myeloid cells to remodel the basement membrane and ultimately initiate tumor invasion. CSC transcriptional programs are conserved in human carcinomas and associated with poor patient survival. These findings illuminate the process of cancer initiation at single cell resolution, thus identifying candidate targets for early cancer detection and prevention., Competing Interests: DECLARATION OF INTERESTS J.S.G. has received other commercial research support from Kura Oncology, Mavupharma, Dracen, Verastem, and SpringWorks Therapeutics, and is a consultant/advisory board member for Domain Therapeutics, Pangea Therapeutics, and io9, and founder of Kadima Pharmaceuticals. The remaining authors declare no competing interests. Additional Declarations: Yes there is potential Competing Interest. J.S.G. has received other commercial research support from Kura Oncology, Mavupharma, Dracen, SpringWorks Therapeutics, is a consultant/advisory board member for Oncoceutics Inc., Vividion Therapeutics, Domain Therapeutics, and Pangea Therapeutics, and io9, and founder of Kadima Pharmaceuticals. The remaining authors declare no competing interests.
- Published
- 2023
- Full Text
- View/download PDF
128. The GPCR-Gα s -PKA signaling axis promotes T cell dysfunction and cancer immunotherapy failure.
- Author
-
Wu VH, Yung BS, Faraji F, Saddawi-Konefka R, Wang Z, Wenzel AT, Song MJ, Pagadala MS, Clubb LM, Chiou J, Sinha S, Matic M, Raimondi F, Hoang TS, Berdeaux R, Vignali DAA, Iglesias-Bartolome R, Carter H, Ruppin E, Mesirov JP, and Gutkind JS
- Subjects
- Mice, Animals, Signal Transduction, Mice, Transgenic, Immunotherapy, Tumor Microenvironment, CD8-Positive T-Lymphocytes, Neoplasms
- Abstract
Immune checkpoint blockade (ICB) targeting PD-1 and CTLA-4 has revolutionized cancer treatment. However, many cancers do not respond to ICB, prompting the search for additional strategies to achieve durable responses. G-protein-coupled receptors (GPCRs) are the most intensively studied drug targets but are underexplored in immuno-oncology. Here, we cross-integrated large singe-cell RNA-sequencing datasets from CD8
+ T cells covering 19 distinct cancer types and identified an enrichment of Gαs -coupled GPCRs on exhausted CD8+ T cells. These include EP2 , EP4 , A2A R, β1 AR and β2 AR, all of which promote T cell dysfunction. We also developed transgenic mice expressing a chemogenetic CD8-restricted Gαs -DREADD to activate CD8-restricted Gαs signaling and show that a Gαs -PKA signaling axis promotes CD8+ T cell dysfunction and immunotherapy failure. These data indicate that Gαs -GPCRs are druggable immune checkpoints that might be targeted to enhance the response to ICB immunotherapies., (© 2023. The Author(s), under exclusive licence to Springer Nature America, Inc.)- Published
- 2023
- Full Text
- View/download PDF
129. Computerized tumor multinucleation index (MuNI) is prognostic in p16+ oropharyngeal carcinoma.
- Author
-
Koyuncu CF, Lu C, Bera K, Zhang Z, Xu J, Toro P, Corredor G, Chute D, Fu P, Thorstad WL, Faraji F, Bishop JA, Mehrad M, Castro PD, Sikora AG, Thompson LD, Chernock RD, Lang Kuhs KA, Luo J, Sandulache V, Adelstein DJ, Koyfman S, Lewis JS Jr, and Madabhushi A
- Subjects
- Aged, Disease-Free Survival, Female, Follow-Up Studies, Humans, Male, Middle Aged, Survival Rate, Biomarkers, Tumor metabolism, Cyclin-Dependent Kinase Inhibitor p16 metabolism, Deep Learning, Head and Neck Neoplasms metabolism, Head and Neck Neoplasms mortality, Head and Neck Neoplasms pathology, Image Processing, Computer-Assisted, Squamous Cell Carcinoma of Head and Neck metabolism, Squamous Cell Carcinoma of Head and Neck mortality, Squamous Cell Carcinoma of Head and Neck pathology
- Abstract
BACKGROUNDPatients with p16+ oropharyngeal squamous cell carcinoma (OPSCC) are potentially cured with definitive treatment. However, there are currently no reliable biomarkers of treatment failure for p16+ OPSCC. Pathologist-based visual assessment of tumor cell multinucleation (MN) has been shown to be independently prognostic of disease-free survival (DFS) in p16+ OPSCC. However, its quantification is time intensive, subjective, and at risk of interobserver variability.METHODSWe present a deep-learning-based metric, the multinucleation index (MuNI), for prognostication in p16+ OPSCC. This approach quantifies tumor MN from digitally scanned H&E-stained slides. Representative H&E-stained whole-slide images from 1094 patients with previously untreated p16+ OPSCC were acquired from 6 institutions for optimization and validation of the MuNI.RESULTSThe MuNI was prognostic for DFS, overall survival (OS), or distant metastasis-free survival (DMFS) in p16+ OPSCC, with HRs of 1.78 (95% CI: 1.37-2.30), 1.94 (1.44-2.60), and 1.88 (1.43-2.47), respectively, independent of age, smoking status, treatment type, or tumor and lymph node (T/N) categories in multivariable analyses. The MuNI was also prognostic for DFS, OS, and DMFS in patients with stage I and stage III OPSCC, separately.CONCLUSIONMuNI holds promise as a low-cost, tissue-nondestructive, H&E stain-based digital biomarker test for counseling, treatment, and surveillance of patients with p16+ OPSCC. These data support further confirmation of the MuNI in prospective trials.FUNDINGNational Cancer Institute (NCI), NIH; National Institute for Biomedical Imaging and Bioengineering, NIH; National Center for Research Resources, NIH; VA Merit Review Award from the US Department of VA Biomedical Laboratory Research and Development Service; US Department of Defense (DOD) Breast Cancer Research Program Breakthrough Level 1 Award; DOD Prostate Cancer Idea Development Award; DOD Lung Cancer Investigator-Initiated Translational Research Award; DOD Peer-Reviewed Cancer Research Program; Ohio Third Frontier Technology Validation Fund; Wallace H. Coulter Foundation Program in the Department of Biomedical Engineering; Clinical and Translational Science Award (CTSA) program, Case Western Reserve University; NCI Cancer Center Support Grant, NIH; Career Development Award from the US Department of VA Clinical Sciences Research and Development Program; Dan L. Duncan Comprehensive Cancer Center Support Grant, NIH; and Computational Genomic Epidemiology of Cancer Program, Case Comprehensive Cancer Center. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH, the US Department of VA, the DOD, or the US Government.
- Published
- 2021
- Full Text
- View/download PDF
130. An Atypical Cause of Difficulty Swallowing.
- Author
-
Devries JK, Faraji F, Bracken D, and Weissbrod PA
- Subjects
- Aged, Contrast Media, Diagnosis, Differential, Esophagoscopy, Female, Humans, Laryngeal Neoplasms diagnostic imaging, Laryngoscopy, Neurilemmoma diagnosis, Tomography, X-Ray Computed, Deglutition Disorders etiology, Laryngeal Neoplasms complications, Laryngeal Neoplasms surgery, Neurilemmoma complications, Neurilemmoma surgery
- Published
- 2020
- Full Text
- View/download PDF
131. Bullous Pemphigoid Presenting as Oropharyngeal Hemorrhage.
- Author
-
Faraji F, Crawford K, Stramiello CJ, Jafari A, Weissbrod PA, and Brumund KT
- Subjects
- Combined Modality Therapy, Diagnosis, Differential, Esophagoscopy, Humans, Immunosuppressive Agents therapeutic use, Laryngoscopy, Lower Extremity, Male, Middle Aged, Oral Hemorrhage therapy, Pemphigoid, Bullous therapy, Oral Hemorrhage diagnosis, Pemphigoid, Bullous diagnosis
- Published
- 2019
- Full Text
- View/download PDF
132. An integrated systems genetics screen reveals the transcriptional structure of inherited predisposition to metastatic disease.
- Author
-
Faraji F, Hu Y, Wu G, Goldberger NE, Walker RC, Zhang J, and Hunter KW
- Subjects
- Animals, Gene Regulatory Networks, Genetic Predisposition to Disease, Humans, Mice, MicroRNAs genetics, Neoplasm Metastasis pathology, Neoplasms pathology, Quantitative Trait Loci genetics, RNA, Messenger genetics, Gene Expression Regulation, Neoplastic genetics, Neoplasm Metastasis genetics, Neoplasms genetics, Repressor Proteins genetics
- Abstract
Metastasis is the result of stochastic genomic and epigenetic events leading to gene expression profiles that drive tumor dissemination. Here we exploit the principle that metastatic propensity is modified by the genetic background to generate prognostic gene expression signatures that illuminate regulators of metastasis. We also identify multiple microRNAs whose germline variation is causally linked to tumor progression and metastasis. We employ network analysis of global gene expression profiles in tumors derived from a panel of recombinant inbred mice to identify a network of co-expressed genes centered on Cnot2 that predicts metastasis-free survival. Modulating Cnot2 expression changes tumor cell metastatic potential in vivo, supporting a functional role for Cnot2 in metastasis. Small RNA sequencing of the same tumor set revealed a negative correlation between expression of the Mir216/217 cluster and tumor progression. Expression quantitative trait locus analysis (eQTL) identified cis-eQTLs at the Mir216/217 locus, indicating that differences in expression may be inherited. Ectopic expression of Mir216/217 in tumor cells suppressed metastasis in vivo. Finally, small RNA sequencing and mRNA expression profiling data were integrated to reveal that miR-3470a/b target a high proportion of network transcripts. In vivo analysis of Mir3470a/b demonstrated that both promote metastasis. Moreover, Mir3470b is a likely regulator of the Cnot2 network as its overexpression down-regulated expression of network hub genes and enhanced metastasis in vivo, phenocopying Cnot2 knockdown. The resulting data from this strategy identify Cnot2 as a novel regulator of metastasis and demonstrate the power of our systems-level approach in identifying modifiers of metastasis.
- Published
- 2014
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.