1,325 results on '"Emmerling R"'
Search Results
102. Lights on the Synthesis of Surfactant-Free Colloidal Gold Nanoparticles in Alkaline Mixtures of Alcohols and Water.
- Author
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Røjkjær Rasmussen D, Lock N, and Quinson J
- Abstract
Surfactant-free colloidal syntheses in aqueous media are attractive to develop nanomaterials relevant for various applications, e. g. catalysis or medicine. However, controlled green syntheses without surfactants of metal nanoparticles in aqueous media remain scarce. Here, room temperature syntheses of gold (Au) nanoparticles (NPs) that require only HAuCl
4 , alkaline water and an alcohol, i. e. relatively benign chemicals and mild reaction conditions, are developed. The findings of a comprehensive multi-parameters screening performed in small volumes (<3 mL) over 1000+ experiments pave the way to greener high throughput screenings of large parametric spaces and lead to scalable (100 mL) synthetic strategies. A rational selection of the alcohol is proposed. The influence of lights with defined wavelengths (222-690 nm) is investigated. It is found that lights with lower wavelengths favor the formation of smaller 5 nm NPs. Different kinetics and formation pathways are observed for different alcohols and for lights with different wavelengths. The sensitivity to various experimental parameters increases with the alcohol used in the order glycerol- Published
- 2024
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103. Influence of different environmental challenges on the expression of reproductive traits in Holstein cattle in Southern Brazil.
- Author
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Martins R, Nascimento BM, Valloto AA, Carvalheiro R, de Albuquerque LG, de Almeida Teixeira R, and Dias LT
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- Animals, Cattle genetics, Cattle physiology, Brazil, Female, Environment, Lactation, Genotype, Breeding, Milk metabolism, Dairying, Reproduction, Gene-Environment Interaction
- Abstract
The aim of this study was to assess the impact of genotype-environment interaction (GEI) on the manifestation of traits such as age at first calving (AFC), age at first service (AFS), and calving interval (CI) through the application of the reaction norm model in Holstein cattle raised in Paraná state, Brazil. Utilizing data from the milk testing service of the Paraná Association of Holstein Cattle Breeders (APCBRH), this study analyzed records from 179,492 animals undergoing their first, second, and third lactations from the years 2012 to 2022. These animals were part of 513 herds spread across 72 municipalities in Paraná. The environmental gradient was established by normalizing contemporary group solutions, derived from the animal model, with the 305-day-corrected milk yield serving as the dependent variable. Subsequently, reaction norms were determined utilizing a Random Regression Model. Spearman's correlation was then applied to compare the estimates of breeding values across different environmental gradients for the studied traits. The highest EG (+ 4) indicates the least challenging environments, where animals experience better environmental conditions. Conversely, lower EG (-4) values represent the most challenging environments, where animals endure worse conditions. The only trait that exhibited a moderate heritability magnitude was AFC (0.23) in the least challenging environmental condition. The other traits were classified as having low heritability magnitudes regardless of the evaluated environmental gradient. While minimal evidence was found for the influence of GEI on CI, a clear GEI effect was observed for AFC and AFS across all environmental gradients examined. A reversal in genotype ranking occurred under extreme environmental conditions. The findings suggest that the best-performing genotype under one environmental gradient may not necessarily excel under another., (© 2024. The Author(s), under exclusive licence to Springer Nature B.V.)
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- 2024
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104. Maneuverability and Processability of Molecular Crystals.
- Author
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Lan L and Zhang H
- Abstract
Crystal adaptronics, a burgeoning field at the intersection of materials science and engineering, focuses on harnessing the unique properties of organic molecular crystals to achieve unprecedented levels of maneuverability and processability in various applications. Increasingly, ordered stacks of crystalline materials are being endowed with fascinating mechanical compliance changes in response to external environments. Understanding how these crystals can be manipulated and tailored for specific functions has become paramount in the pursuit of advanced materials with customizable properties. Simultaneously, the processability of organic molecular crystals plays a pivotal role in shaping their utility in real-world applications. From growth methodologies to fabrication techniques, the ability to precisely machine these crystals opens new avenues for engineering materials with enhanced functionality. These processing methods enhance the versatility of organic crystals, allowing their integration into various devices and technologies, and further expanding the potential applications. This review aims to provide a concise overview of the current landscape in the study of dynamic organic molecular crystals, with an emphasis on the interconnected themes of operability and processability., (© 2024 Wiley-VCH GmbH.)
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- 2024
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105. Supramolecular Polymer Frameworks with Controlled and Uniform Pore Apertures.
- Author
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Gao RT, Li SY, Zong Y, Chen Z, Liu N, and Wu ZQ
- Abstract
Porous frameworks with controlled pore structure and tunable aperture are greatly demanded. However, precise synthesis of this kind of materials is a formidable challenge. Herein, we report the fabrication of two-dimensional (2D) supramolecular polymer frameworks using a precisely synthesized rod-like helical polyisocyanide as link. Four three-arm star-shaped polyisocyanides with the degree of the polymerization of 10, 20, 30 and 40, and having 2-ureido-4[1H]-pyrimidinone (UPy) terminals were synthesized. 2D-Crystalline polymer frameworks with apertures of 5.3, 10.1, 13.9, and 19.1 nm were respectively obtained through intermolecular hydrogen bonding interaction between the terminal Upy units. The pore aperture is dependent on the length of polyisocyanide backbone. Thus, well-defined supramolecular polymer frameworks with controlled and uniform hexagonal pores were obtained, as proved by small-angle X-ray scattering (synchrotron radiation facility), atomic force microscopy, and Brunauer-Emmett-Teller analyses. The frameworks with uniform large pore aperture were used to purify nanomaterials and immobilize biomacromolecules. For instance, the membranes of the polymer frameworks could size-fractionation of silver nanoparticles into uniform nanoparticles with very low dispersity. The frameworks with large aperture facilitated the inclusion of myoglobin and enhanced the stability and catalytic activity., (© 2024 Wiley-VCH GmbH.)
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- 2024
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106. Ionic Liquid-Accelerated Growth of Covalent Organic Frameworks with Tunable Layer-Stacking.
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Deng L, Zhu S, Zou Q, Xie Q, Song G, Pan C, Wei B, Huang Z, Liu T, Tang J, Yuan J, and Yu G
- Abstract
Layer-stacking behaviors are crucial for two-dimensional covalent organic frameworks (2D COFs) to define their pore structure, physicochemical properties, and functional output. So far, fine control over the stacking mode without complex procedures remains a grand challenge. Herein, we proposed a "key-cylinder lock mimic" strategy to synthesize 2D COFs with a tunable layer-stacking mode by taking advantage of ionic liquids (ILs). The staggered (AB) stacking (unlocked) COFs were exclusively obtained by incorporating ILs of symmetric polarity and matching molecular size; otherwise, commonly reported eclipsed (AA) stacking (locked) COFs were observed instead. Mechanistic study revealed that AB stacking was induced by a confined interlocking effect (CIE) brought by anions and bulky cations of the ILs inside pores ("key" and "cylinder", respectively). Excitingly, this strategy can speed up production rate of crystalline powders (e.g., COF-TAPT-Tf@BmimTf
2 N in merely 30 minutes) under mild reaction conditions. This work highlights the enabling role of ILs to tailor the layer stacking of 2D COFs and promotes further exploration of their stacking mode-dependant applications., (© 2024 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)- Published
- 2024
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107. Transparent Silica Aerogels: Optical and Chemical Design, Controlled Synthesis, and Emerging Applications.
- Author
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Xie J, Wang L, Li G, Liao J, and Zhang X
- Abstract
Transparent silica aerogel, serving as one typical porous and transparent material, possesses various unique features (e. g., large amounts of pores and interfaces, super-lightweight, super thermal insulation, low refractive index similar to gas), and it has attracted great attention in the fields of science, technology, engineering, art, and others. Transparency is one important evaluation index of transparent silica aerogel, and it was influenced by various factors such as raw materials, sol-gel reactions, phase separation, and drying methods. The structure design and fabrication of transparent silica aerogel is one huge and fine engineering. In this review, the optical/chemical guidance and design for the preparation of transparent silica aerogels are discussed, and typical applications, such as Cherenkov detectors, solar energy collection, lighting systems, and transparent fabric, were also discussed. Finally, a future outlook on the opportunities and challenges of transparent silica aerogels was proposed., (© 2024 Wiley-VCH GmbH.)
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- 2024
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108. Beyond The Sphere. Au 20 (PR 3 ) 8 as a Spherical Aromatic Cuboctahedron Cluster.
- Author
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Muñoz-Castro A
- Abstract
The icosahedral Au
13 5+ core is a recurrent building block in ligand-protected gold clusters involving an 8-cluster electron 1S2 1P6 electronic shell. Such a prototypical structure enables a spherical aromatic behavior as given by long-range magnetic shielding. Recently, the Au20 (t Bu3 P)8 cluster featuring a contrasting cuboctahedral core with formally neutral gold atoms appears as a novel core architecture with the potential to be considered as another potential building block towards functional nanostructures. Here, we explore the ligand-core interaction and spherical aromatic characteristics of Au20 (t Bu3 P)8 , in order to provide a direct connection to classical icosahedral spherical aromatic compounds, now involving a cuboctahedral core structure. Such characteristics suggest rationalization of their robustness in terms of certain electron counts, enabling a shielding cone property in ligand-protected metallic clusters, which favors bridging organic and inorganic planar/spherical aromatic species towards the unification of the aromaticity concept and designing guidelines for further achievements., (© 2024 Wiley-VCH GmbH.)- Published
- 2024
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109. Genomic patterns of selection in morphometric traits across diverse Indian cattle breeds.
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Rajawat D, Nayak SS, Jain K, Sharma A, Parida S, Sahoo SP, Bhushan B, Patil DB, Dutt T, and Panigrahi M
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- Animals, Cattle genetics, Cattle anatomy & histology, Phenotype, Genome, India, Polymorphism, Single Nucleotide, Quantitative Trait, Heritable, Genotype, High-Throughput Nucleotide Sequencing, Selection, Genetic, Breeding, Genomics methods
- Abstract
This study seeks a comprehensive exploration of genome-wide selective processes impacting morphometric traits across diverse cattle breeds, utilizing an array of statistical methods. Morphometric traits, encompassing both qualitative and quantitative variables, play a pivotal role in characterizing and selecting livestock breeds based on their external appearance, size, and physical attributes. While qualitative traits, such as color, horn structure, and coat type, contribute to adaptive features and breed identification, quantitative traits like body weight and conformation measurements bear a closer correlation with production characteristics. This study employs advanced genotyping technologies, including the Illumina BovineSNP50 Bead Chip and next-generation sequencing methods like Reduced Representation sequencing, to identify genomic signatures associated with these traits. We applied four intra-population methods to find evidence of selection, such as Tajima's D, CLR, iHS, and ROH. We found a total of 40 genes under the selection signature, that were associated with morphometric traits in five cattle breeds (Kankrej, Tharparkar, Nelore, Sahiwal, and Gir). Crucial genes such as ADIPDQ, DPP6, INSIG1, SLC35D2 in Kankrej, LPL, ATP6V1B2, CDC14B in Tharparkar, HPSE2, PLAG1 in Nelore, PCSK1, PRKD1 in Sahiwal, and GNAQ, HPCAL1 in Gir were identified in our study. This approach provides valuable insights into the genetic basis of variations in body weight and conformation traits, facilitating informed selection processes and offering a deeper understanding of the evolutionary and domestication processes in diverse cattle breeds., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2024
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110. LEADERSHIP COMPETENCIES AND BUSINESS PERFORMANCE IN THE HOTEL INDUSTRY.
- Author
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KWIOTKOWSKA, Anna and GĘBCZYŃSKA, Magdalena
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ORGANIZATIONAL performance ,LIFE skills ,LEADERSHIP training ,HOTELKEEPERS ,LEADERSHIP ,COMPARATIVE method ,HOTEL management - Abstract
Purpose: The aim of this study is to investigate the relationship between hotel managers' leadership competencies, such as cognitive competencies, functional competencies, social competencies, and meta-competencies, and high hotel performance. Design/methodology/approach: A qualitative comparative analysis using a fuzzy set (fs/QCA) was conducted, examining the configurations of leadership competencies that are associated with hotel performance. This method is suitable for analyzing the relationship between the outcome (i.e. hotel performance) and all possible combinations of potential causal conditions (i.e. cognitive, functional, social, and meta-competence of hotel CEOs). Findings: The results reveal the existence of different configurations that lead to the desired performance outcomes. Each configuration combines two or three causal conditions – leadership competencies. Three solutions were found to explain how different leadership competencies of hotel CEOs configure the achievement of high hotel performance. Practical implications: The existence of alternative configurations indicates that hotels may follow alternative paths to achieve high performance (as measured against competitors) in conjunction with the different combinations of leadership competencies of their top managers. Focusing on just one competence (i.e. cognitive, functional, social, and meta) is insufficient to achieve high performance. Each leadership competence must be analyzed in combination with at least one more to allow the hotel to achieve its performance objectives. Originality/value: By examining hotels on the Baltic Sea coast in Poland this research contributes to understanding how the leadership competencies of hotel managers, such as cognitive, functional, social and meta-competencies combine and interact to build high hotel performance. Unlike quantitative estimation techniques, fs/QCA is not symmetric. Thanks to the use of fs/QCA, it was also checked which combinations of leadership competencies lead to low hotel performance. As research results indicate, low hotel performance is caused by a combination of low cognitive, functional and social competencies. Importantly, although hotel managers' social competencies are important for high hotel performance, they are irrelevant for low hotel performance. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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111. Genome-Wide Association Analysis Identifies the PMEL Gene Affecting Coat Color and Birth Weight in Simmental × Holstein.
- Author
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Wang, Jing, Fan, Tingting, Du, Zhenwei, Xu, Lingyang, Chen, Yan, Zhang, Lupei, Gao, Huijiang, Li, Junya, Ma, Yi, and Gao, Xue
- Subjects
ANIMAL coloration ,BIRTH weight ,GENOME-wide association studies ,CATTLE breeds ,CATTLE breeding ,SIMMENTAL cattle - Abstract
Simple Summary: Coat color and birth weight are important traits in beef cattle and have a significant impact on breed identification and adult body weight. In this study, genome-wide association analysis (GWAS) of Simmental × Holstein (F1) crossbred cattle revealed that calves with lighter coat color had higher birth weight. Further analysis indicated that mutations in the premelanosome protein (PMEL) gene resulted in a lighter coat color, while the birth weights of individuals heterozygous for this gene were significantly higher than those of the pure genotype. Therefore, mutations in PMEL can result in a lighter coat color, and lighter coat color may, thus, have a selective effect on calf birth weight. Coat color and birth weight, as easily selected traits in cattle, play important roles in cattle breeding. Therefore, we carried out a genome-wide association study on birth weight and coat color to identify loci or potential linkage regions in 233 Simmental × Holstein crossbred beef cattle. The results revealed that nine SNPs were significantly associated with coat color (rs137169378, rs110022687, rs136002689, Hypotrichosis_PMel17, PMEL_1, rs134930689, rs383170073, rs109924971, and rs109146332), and these were in RNF41, ZC3H10, ERBB3, PMEL, and OR10A7 on BTA5. Interestingly, rs137169378, rs110022687, rs136002689, Hypotrichosis_PMel17, and PMEL_1 showed strong linkage disequilibrium (r
2 > 0.8) and were significantly associated with coat color. Notably, Hypotrichosis_PMel17 and PMEL_1 were located in the gene PMEL (p = 2.22 × 10−18 ). Among the five significant SNPs associated with coat color, the birth weight of heterozygous individuals (AB) was greater than that of homozygous individuals (AA). Notably, the birth weight of heterozygous individuals with Hypotrichosis_PMel17 and PMEL_1 genotypes was significantly greater than that of homozygous individuals (0.01 < p < 0.05). Interestingly, the two loci were homozygous in black/white individuals and heterozygous in gray/white individuals, and the birth weight of heterozygous brown/white individuals (43.82 ± 5.25 kg) was greater than that of homozygous individuals (42.58 ± 3.09 kg). The birth weight of calves with the parental color (41.95 ± 3.53 kg) was significantly lower than that of calves with a non-parental color (43.54 ± 4.78 kg) (p < 0.05), and the birth weight of gray/white individuals (49.40 ± 7.11 kg) was the highest. Overall, PMEL appears to be a candidate gene affecting coat color in cattle, and coat color may have a selective effect on birth weight. This study provides a foundation for the breeding of beef cattle through GWAS for coat color and birth weight. [ABSTRACT FROM AUTHOR]- Published
- 2023
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112. Association of udder type traits with single nucleotide polymorphisms in Sahiwal (Bos indicus) and Karan Fries (Bos taurus × Bos indicus) cattle.
- Author
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Sinha, Rebeka, Sinha, Beena, Kumari, Ragini, M. R., Vineeth, Sharma, Nisha, Verma, Archana, and Gupta, Ishwar Dayal
- Subjects
ZEBUS ,CATTLE ,SINGLE nucleotide polymorphisms ,SAHIWAL cattle ,MILKING ,VITAMIN D receptors ,CATTLE crossbreeding ,PROTEIN-tyrosine phosphatase - Abstract
Udder structure of milking cows is not merely vital to display the visual characteristics, but also important for high milk output and low mastitis risk incidence as well. The present study measured different udder type traits in Sahiwal (Bos indicus) and Karan Fries (Bos taurus × Bos indicus) and investigated their association with single nucleotide polymorphisms in Vitamin D Receptor and Protein Tyrosine Phosphatase, Receptor Type, R genes. GG genotype of SNP rs454303072 was found to have wider rear udder, larger udder circumference, longer distance between fore-rear teats and left-right teats in Karan Fries cattle. Whereas, in Sahiwal cattle, AA genotype of this SNP was found to be associated with the higher and wider rear udder, larger udder circumference and wider udder. AA genotype of SNP rs382671389 was found to be associated with longer fore teat in Karan Fries cattle. The TT and CC genotype of SNP rs435289107 was associated with udder type traits in Karan Fries and Sahiwal cattle respectively. These results suggest that BTA 5 harbors genomic regions associated with udder traits in Bos indicus and Bos indicus x Bos taurus cattle. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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113. Optimising clonal performance in sugarcane: leveraging non-additive effects via mate-allocation strategies.
- Author
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Yadav, Seema, Ross, Elizabeth M., Xianming Wei, Powell, Owen, Hivert, Valentin, Hickey, Lee T., Atkin, Felicity, Deomano, Emily, Aitken, Karen S., Voss-Fels, Kai P., and Hayes, Ben J.
- Subjects
SUGARCANE ,LINEAR programming ,INTEGER programming ,HETEROZYGOSITY ,INBREEDING ,MOLECULAR cloning ,FEED additives ,SUGARCANE growing - Abstract
Mate-allocation strategies in breeding programs can improve progeny performance by harnessing non-additive genetic effects. These approaches prioritise predicted progeny merit over parental breeding value, making them particularly appealing for clonally propagated crops such as sugarcane. We conducted a comparative analysis of mate-allocation strategies, exploring utilising non-additive and heterozygosity effects to maximise clonal performance with schemes that solely consider additive effects to optimise breeding value. Using phenotypic and genotypic data from a population of 2,909 clones evaluated in final assessment trials of Australian sugarcane breeding programs, we focused on three important traits: tonnes of cane per hectare (TCH), commercial cane sugar (CCS), and Fibre. By simulating families from all possible crosses (1,225) with 50 progenies each, we predicted the breeding and clonal values of progeny using two models: GBLUP (considering additive effects only) and extended-GBLUP (incorporating additive, non-additive, and heterozygosity effects). Integer linear programming was used to identify the optimal mate-allocation among selected parents. Compared to breeding value-based approaches, mate-allocation strategies based on clonal performance yielded substantial improvements, with predicted progeny values increasing by 57% for TCH, 12% for CCS, and 16% for fibre. Our simulation study highlights the effectiveness of mate-allocation approaches that exploit non-additive and heterozygosity effects, resulting in superior clonal performance. However, there was a notable decline in additive gain, particularly for TCH, likely due to significant epistatic effects. When selecting crosses based on clonal performance for TCH, the inbreeding coefficient of progeny was significantly lower compared to random mating, underscoring the advantages of leveraging non-additive and heterozygosity effects in mitigating inbreeding depression. Thus, mate-allocation strategies are recommended in clonally propagated crops to enhance clonal performance and reduce the negative impacts of inbreeding. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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114. Functional mimicry of sea urchin biomineralization proteins with CaCO3-binding peptides selected by phage display.
- Author
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Völkle (nee Evgrafov), Elke, Schulz, Fabian, Kanold, Julia Maxi, Michaelis, Monika, Wissel, Kerstin, Brümmer, Franz, Schenk, Anna S., Ludwigs, Sabine, Bill, Joachim, and Rothenstein, Dirk
- Abstract
The intricate process of biomineralization, e.g. in sea urchins, involves the precise interplay of highly regulated mineralization proteins and the spatiotemporal coordination achieved through compartmentalization. However, the investigation of biomineralization effector molecules, e.g. proteins, is challenging, due to their very low abundance. Therefore, we investigate the functional mimicry in the bioinspired precipitation of calcium carbonate (CaCO
3 ) with artificial peptides selected from a peptide library by phage display based on peptide-binding to calcite and aragonite, respectively. The structure-directing effects of the identified peptides were compared to those of natural protein mixes isolated from skeletal (test) structures of two sea urchin species (Arbacia lixula and Paracentrotus lividus). The calcium carbonate samples deposited in the absence or presence of peptides were analyzed with a set of complementary techniques with regard to morphology, polymorph, and nanostructural motifs. Remarkably, some of the CaCO3 -binding peptides induced morphological features in calcite that appeared similar to those obtained in the presence of the natural protein mixes. Many of the peptides identified as most effective in exerting a structure-directing effect on calcium carbonate crystallization were rich in basic amino acid residues. Hence, our in vitro mineralization study further highlights the important, but often neglected, role of positively charged soluble organic matrices associated with biological and bioinspired CaCO3 deposition. [ABSTRACT FROM AUTHOR]- Published
- 2023
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115. How far the chemistry of self-assembled monolayers on gold surfaces affects their work function?
- Author
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Bossard-Giannesini, Léo, Cardenas, Luis, Cruguel, Hervé, Demessence, Aude, Loffreda, David, and Pluchery, Olivier
- Published
- 2023
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116. Unraveling chemical processes during nanoparticle synthesis with liquid phase electron microscopy and correlative techniques.
- Author
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Chen, Amy, Dissanayake, Thilini U., Sun, Jiayue, and Woehl, Taylor J.
- Subjects
CHEMICAL processes ,NANOPARTICLE synthesis ,ELECTRON microscope techniques ,ANALYTICAL chemistry ,CHEMICAL models ,SOLUTION (Chemistry) - Abstract
Liquid phase transmission electron microscopy (LPTEM) has enabled unprecedented direct real time imaging of physicochemical processes during solution phase synthesis of metallic nanoparticles. LPTEM primarily provides images of nanometer scale, and sometimes atomic scale, metal nanoparticle crystallization processes, but provides little chemical information about organic surface ligands, metal–ligand complexes and reaction intermediates, and redox reactions. Likewise, complex electron beam-solvent interactions during LPTEM make it challenging to pinpoint the chemical processes, some involving exotic highly reactive radicals, impacting nanoparticle formation. Pairing LPTEM with correlative solution synthesis, ex situ chemical analysis, and theoretical modeling represents a powerful approach to gain a holistic understanding of the chemical processes involved in nanoparticle synthesis. In this feature article, we review recent work by our lab and others that has focused on elucidating chemical processes during nanoparticle synthesis using LPTEM and correlative chemical characterization and modeling, including mass and optical spectrometry, fluorescence microscopy, solution chemistry, and reaction kinetic modeling. In particular, we show how these approaches enable investigating redox chemistry during LPTEM, polymeric and organic capping ligands, metal deposition mechanisms on plasmonic nanoparticles, metal clusters and complexes, and multimetallic nanoparticle formation. Future avenues of research are discussed, including moving beyond electron beam induced nanoparticle formation by using light and thermal stimuli during LPTEM. We discuss prospects for real time LPTEM imaging and online chemical analysis of reaction intermediates using microfluidic flow reactors. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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117. IMPLEMENTING GENOMIC SELECTION IN THE IMB: CHALLENGES AND OPPORTUNITIES.
- Author
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Biffani, Stefano, Gómez, Mayra, Cimmino, Roberta, Rossi, Dario, Zullo, Gianluigi, Negrini, Riccardo, Cesarani, Alberto, Campanile, Giuseppe, and Neglia, Gianluca
- Subjects
WATER buffalo ,GENOTYPES ,MOZZARELLA cheese - Abstract
Copyright of Revista Cientifica de la Facultade de Veterinaria is the property of Universidad del Zulia, Facultad de Ciencias Veterinarias and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2023
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118. Impact of workplace bullying on work engagement among early career employees.
- Author
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Javed, Iqra, Niazi, Amna, Nawaz, Sadia, Ali, Muhammad, and Hussain, Mujahid
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BULLYING in the workplace ,JOB involvement ,WORK environment ,PSYCHOLOGICAL contracts (Employment) ,BANKING industry ,TACIT knowledge - Abstract
This study aims to measure the impact of workplace bullying on work engagement in terms of employee silence and knowledge sharing. It also helps to explain how psychological contract breach moderates the bullying-silence relationship. For this study, data is collected from 384 early-career employees having experience up to three years from seven banks of Lahore, Pakistan. Findings of this study reveals that workplace bullying has a positive relationship with employee silence and negative relationship with work engagement. Results of all moderation and mediated variables are significantly related to each other. However, the results explain that a psychological contract breach slightly moderates the bullying-silence relationship. Survey-based questionnaire, cross-sectional research design, and convenience-based sampling technique are some of the limitations of this study. This is the first study that tried to investigate the bullying-engagement relationship among early-career employees in the banking sector of Lahore, Pakistan. This study may help practitioners and policymakers to develop anti-bullying laws that can support the management in overcoming the negative workplace environment. This study aims to promote an equal opportunity for all employees where they can raise their voices about misconduct. This is the first study that investigated the victimization of bullying behavior among early-career employees in a Pakistani cultural context. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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119. Differences between surfactant-free Au@Ag and CTAB-stabilized Au@Ag star-like nanoparticles in the preparation of nanoarrays to improve their surface-enhanced Raman scattering (SERS) performance.
- Author
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Sy Van Vu, Anh-Thu Nguyen, Anh-Thi Cao Tran, Viet-Ha Thi Le, Tien Nu Hoang Lo, Thi H. Ho, Nguyet. N. T. Pham, In Park, and Khuong Quoc Vo
- Published
- 2023
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120. Multi-breed genomic evaluation for tropical beef cattle when no pedigree information is available.
- Author
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Hayes, Ben J., Copley, James, Dodd, Elsie, Ross, Elizabeth M., Speight, Shannon, and Fordyce, Geoffry
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BEEF cattle ,GENETIC markers ,GENEALOGY ,CATTLE genetics ,HETEROSIS ,CROSSBREEDING - Abstract
Background: It has been challenging to implement genomic selection in multi-breed tropical beef cattle populations. If commercial (often crossbred) animals could be used in the reference population for these genomic evaluations, this could allow for very large reference populations. In tropical beef systems, such animals often have no pedigree information. Here we investigate potential models for such data, using marker heterozygosity (to model heterosis) and breed composition derived from genetic markers, as covariates in the model. Models treated breed effects as either fixed or random, and included genomic best linear unbiased prediction (GBLUP) and BayesR. A tropically-adapted beef cattle dataset of 29,391 purebred, crossbred and composite commercial animals was used to evaluate the models. Results: Treating breed effects as random, in an approach analogous to genetic groups allowed partitioning of the genetic variance into within-breed and across breed-components (even with a large number of breeds), and estimation of within-breed and across-breed genomic estimated breeding values (GEBV). We demonstrate that moderately-accurate (0.30–0.43) GEBV can be calculated using these models. Treating breed effects as random gave more accurate GEBV than treating breed as fixed. A simple GBLUP model where no breed effects were fitted gave the same accuracy (and correlations of GEBV very close to 1) as a model where GEBV for within-breed and the GEBV for (random) across-breed effects were included. When GEBV were predicted for herds with no data in the reference population, BayesR resulted in the highest accuracy, with 3% accuracy improvement averaged across traits, especially when the validation population was less related to the reference population. Estimates of heterosis from our models were in line with previous estimates from beef cattle. A method for estimating the number of effective breed comparisons for each breed combination accumulated across contemporary groups is presented. Conclusions: When no pedigree is available, breed composition and heterosis for inclusion in multi-breed genomic evaluation can be estimated from genotypes. When GEBV were predicted for herds with no data in the reference population, BayesR resulted in the highest accuracy. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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121. Whole Genome Resequencing Reveals Selection Signals Related to Wool Color in Sheep.
- Author
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Zhang, Wentao, Jin, Meilin, Lu, Zengkui, Li, Taotao, Wang, Huihua, Yuan, Zehu, and Wei, Caihong
- Subjects
SHEEP breeding ,WOOL ,SHEEP ,POPULATION differentiation ,GENETIC variation ,GENOMES ,CATTLE genetics ,NUCLEOTIDE sequencing - Abstract
Simple Summary: The color of wool is an essential trait in sheep which plays a significant role in the textile industry. The color of wool is determined by the presence of various pigments, which can range from white to various shades of brown, gray, black, etc. Understanding the genetics behind wool color is crucial for selective breeding and producing desirable colors for different textile products. By studying the genetic basis of wool color, researchers can identify genes related to pigmentation and develop strategies to enhance or modify wool color. This knowledge contributes to the improvement of wool quality, diversification of textile options, and economic development in the wool industry. Wool color is controlled by a variety of genes. Although the gene regulation of some wool colors has been studied in relative depth, there may still be unknown genetic variants and control genes for some colors or different breeds of wool that need to be identified and recognized by whole genome resequencing. Therefore, we used whole genome resequencing data to compare and analyze sheep populations of different breeds by population differentiation index and nucleotide diversity ratios (Fst and θπ ratio) as well as extended haplotype purity between populations (XP-EHH) to reveal selection signals related to wool coloration in sheep. Screening in the non-white wool color group (G1 vs. G2) yielded 365 candidate genes, among which PDE4B, GMDS, GATA1, RCOR1, MAPK4, SLC36A1, and PPP3CA were associated with the formation of non-white wool; an enrichment analysis of the candidate genes yielded 21 significant GO terms and 49 significant KEGG pathways (p < 0.05), among which 17 GO terms and 21 KEGG pathways were associated with the formation of non-white wool. Screening in the white wool color group (G2 vs. G1) yielded 214 candidate genes, including ABCD4, VSX2, ITCH, NNT, POLA1, IGF1R, HOXA10, and DAO, which were associated with the formation of white wool; an enrichment analysis of the candidate genes revealed 9 significant GO-enriched pathways and 19 significant KEGG pathways (p < 0.05), including 5 GO terms and 12 KEGG pathways associated with the formation of white wool. In addition to furthering our understanding of wool color genetics, this research is important for breeding purposes. [ABSTRACT FROM AUTHOR]
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- 2023
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122. Recent Progress in Silicon‐Based Photonic Integrated Circuits and Emerging Applications.
- Author
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Xiao, Zian, Liu, Weixin, Xu, Siyu, Zhou, Jingkai, Ren, Zhihao, and Lee, Chengkuo
- Subjects
INTEGRATED circuits ,COMPLEMENTARY metal oxide semiconductors ,SEMICONDUCTOR devices ,LIGHT sources ,RESONATORS ,DATA transmission systems - Abstract
In recent years, with the further ministration of the semiconductor device in integrated circuits, power consumption and data transmission bandwidth have become insurmountable obstacles. As an integrated technology, photonic integrated circuits (PICs) have a promising potential in the post‐Moore era with more advantages in data processing, communication, and diversified sensing applications for their ultra‐high process speed and low power consumption. Silicon photonics is believed to be an encouraging solution to realize PICs because of the mature CMOS process. The past decades have witnessed a huge growth in silicon PICs. However, there is still a demand for the development of silicon PICs to enable powerful chip‐scale systems and new functionalities. In this paper, a review of the photonic components, functional blocks, and emerging applications for PICs is offered. The common photonic components are classified into several sections, including on‐chip light sources, fiber‐to‐chip couplers, photonic resonators, waveguide‐based sensors, on‐chip photodetectors, and modulators. The functional blocks of the PICs mentioned in this review are photonic memories and photonic neural networks. Finally, the paper concludes with emerging applications for further study. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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123. Molecular Characteristics and Polymorphisms of Buffalo (Bubalus bubalis) ABCG2 Gene and Its Role in Milk Fat Synthesis.
- Author
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Zhou, Fangting, Fan, Xinyang, Xu, Xiaoqi, Li, Zhuoran, Qiu, Lihua, and Miao, Yongwang
- Subjects
MILKFAT ,WATER buffalo ,MAMMARY glands ,BILAYER lipid membranes ,GENES ,MILK proteins ,ATP-binding cassette transporters - Abstract
Simple Summary: This study focuses on the ABCG2 gene, which is known to play a crucial role in secreting vitamins into milk and transporting xenotoxic and cytostatic drugs across the plasma membrane in cattle, mice, and humans. However, the specific role of this gene in buffaloes, especially its effect on milk fat synthesis in buffalo mammary epithelial cells (BuMECs), remains inadequately understood. In this study, we isolated and identified the full-length coding region of the buffalo ABCG2 gene from the mammary gland in buffalo and analyzed its physicochemical characteristics, gene structure, conserved domains and motifs, and polymorphisms. This study found that the ABCG2 gene is highly expressed in buffalo mammary glands and plays an important role in milk fat synthesis in BuMECs. These findings contribute to our understanding of milk fat synthesis and could have important implications for the dairy industry. This could benefit both farmers and consumers by helping to provide high-quality milk products. The ATP-binding cassette subfamily G member 2 (ABCG2) serves crucial roles in secreting riboflavin and biotin vitamins into the milk of cattle, mice, and humans, as well as in the transportation of xenotoxic and cytostatic drugs across the plasma membrane. However, the specific role of the ABCG2 gene in water buffaloes (Bubalus bubalis), especially its effect on milk fat synthesis in buffalo mammary epithelial cells (BuMECs), remains inadequately understood. In this study, the full-length CDS of the buffalo ABCG2 gene was isolated and identified from the mammary gland in buffaloes. A bioinformatics analysis showed a high degree of similarity in the transcriptional region, motifs, and conservative domains of the buffalo ABCG2 with those observed in other Bovidae species. The functional role of buffalo ABCG2 was associated with the transportation of solutes across lipid bilayers within cell membranes. Among the 11 buffalo tissues detected, the expression levels of ABCG2 were the highest in the liver and brain, followed by the mammary gland, adipose tissue, heart, and kidney. Notably, its expression in the mammary gland was significantly higher during peak lactation than during non-lactation. The ABCG2 gene was identified with five SNPs in river buffaloes, while it was monomorphic in swamp buffaloes. Functional experiments revealed that ABCG2 increased the triglyceride (TAG) content by affecting the expression of liposynthesis-related genes in BuMECs. The results of this study underscore the pivotal role of the ABCG2 gene in influencing the milk fat synthesis in BuMECs. [ABSTRACT FROM AUTHOR]
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- 2023
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124. The predictors of Turkish youth's career planning: trait emotional intelligence, cognitive flexibility, and resilience.
- Author
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Kirikkanat, Berke
- Abstract
Copyright of International Journal for Educational & Vocational Guidance is the property of Springer Nature and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2023
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125. Active control of molecular stacking types in a congeneric library of dihalogenated salicylideneaniline crystals and their solid solutions.
- Author
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Yoshikawa, Isao, Zhang, Zaixiang, Suzuki, Masahiro, Ikedo, Hana, Yin, Qiuxiang, and Houjou, Hirohiko
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MOLECULAR crystals ,MELTING points ,CRYSTALS ,MOLECULAR structure ,CRYSTAL structure ,SOLID solutions ,STACKING interactions - Abstract
Intentional crystal packing modification is a crucial subject in crystal engineering to achieve functional modulation. In this study, we report a series of congeneric N-(4′-halosalicylidene)-4-haloanilines (4XY, where X and Y = C or B for Cl or Br substitution, respectively). 4BB afforded three polymorphic crystals in which, the isostructural layers were stacked differently, also called polytypes. The structural differences resulted from the different types of interhalogen contacts between the layers. 4CC-y, 4BC, and 4CB crystals were isostructural to one of the 4BB polytypes, reflecting the preferred type of interhalogen contacts depending on the halogen atoms involved. A similar polytypism was found for the 5′-substituted compounds 5XY. By changing the ratio of the 4XY compositions, we obtained a series of binary solid solutions that exhibited various stacking arrangements and melting points while retaining their fundamental molecular structures and properties. The present work serves as a successful example of controlling crystal structures by means of systematic change of constituent atoms in molecular crystals. [ABSTRACT FROM AUTHOR]
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- 2023
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126. Dominance is common in mammals and is associated with trans-acting gene expression and alternative splicing.
- Author
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Cui, Leilei, Yang, Bin, Xiao, Shijun, Gao, Jun, Baud, Amelie, Graham, Delyth, McBride, Martin, Dominiczak, Anna, Schafer, Sebastian, Aumatell, Regina Lopez, Mont, Carme, Teruel, Albert Fernandez, Hübner, Norbert, Flint, Jonathan, Mott, Richard, and Huang, Lusheng
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- 2023
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127. A study of the Relationship of Polymorphisms of the PPARGC1A Gene with Milk Production and its Components, in Holstein Friesian Cows.
- Author
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Al-Muhja, Raed Kawkab, Yousief, Muntaha Yacoob, and Al-Khauzai, Allawi Luaibi Dagher
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- 2023
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128. The Emotional Machiavellian: Interactions Between Leaders and Employees.
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Liyanagamage, Nilupulee, Fernando, Mario, and Gibbons, Belinda
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LEADERSHIP ,MACHIAVELLIANISM (Psychology) ,EMOTIONS ,INTERPERSONAL relations ,ORGANIZATIONAL ethics - Abstract
This paper examines the emotional processes in Machiavellian leadership. The leadership literature portrays Machiavellians as 'dark' individuals that engage in unethical actions, causing employee dissatisfaction, distress, emotional exhaustion and high turnover. However, research has seldom questioned the processes behind these unethical and negative outcomes. This study explores Machiavellian emotional processes at multiple levels—within-persons and relational levels (between-persons and interpersonal interactions in organisations). In this study, emotions and leadership are not explored in isolation but as social processes that occur in relationships between leaders and employees in evolving organisational settings. This study draws on 20 participants from four large multi-national construction firms in Sri Lanka. Open-ended semi-structured interviews were conducted to explore the emotions of Machiavellians in organisations. The findings suggest that Machiavellianism influences leader and employee emotional processes. Furthermore, the emotional processes, influenced by Machiavellianism, appear to facilitate the development of leader and employee relationships and emotional experiences at within-persons and relational levels in organisations. [ABSTRACT FROM AUTHOR]
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- 2023
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129. Genomic prediction of fertility and calving traits in Holstein cattle based on models including epistatic genetic effects.
- Author
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Alves, Kristen, Brito, Luiz F., and Schenkel, Flavio S.
- Subjects
CATTLE fertility ,HOLSTEIN-Friesian cattle ,HADAMARD matrices ,FERTILITY ,MATRIX multiplications ,SIMMENTAL cattle ,FORECASTING - Abstract
The goal of this study was to investigate whether the inclusion of genomic information and epistatic (additive by additive) genetic effects would increase the accuracy of predicting phenotypes adjusted for known environmental effects, reduce prediction bias and minimize the confounding between additive and additive by additive epistatic effects on fertility and calving traits in Holstein cattle. Phenotypic and genotypic records were available for 6090 cows. Eight cow traits were assessed including 56‐day nonreturn rate (NRR), number of services (NS), calving to first insemination (CTFS), first insemination to conception (FSTC), gestation length (GL), calving ease (CE), stillbirth (SB) and calf size (CZ). Four scenarios were assessed for their ability to predict adjusted phenotypes, which included: (1) traditional pedigree‐based Best Linear Unbiased Prediction (P‐BLUP) for additive genetic effects (PA); (2) P‐BLUP for additive and epistatic (additive by additive) genetic effects (PAE); (3) genomic BLUP (G‐BLUP) for additive genetic effects (GA); and (4) G‐BLUP for additive and epistatic genetic effects (GAEn, where n = 1–3 depending on the alternative ways to construct the epistatic genomic matrix used). Constructing epistatic relationship matrix as the Hadamard product of the additive genomic relationship matrix (GAE1), which is the usual method and implicitly assumes a model that fits all pairwise interactions between markers twice and includes the interactions of the markers with themselves (dominance). Two additional constructions of the epistatic genomic relationship matrix were compared to test whether removing the double counting of interactions and the interaction of the markers with themselves (GAE2), and removing double counting of interactions between markers, but including the interaction of the markers with themselves (GAE3) would had an impact on the prediction and estimation error correlation (i.e. confounding) between additive and epistatic genetic effects. Fitting epistatic genetic effects explained up to 5.7% of the variance for NRR (GAE3), 7.7% for NS (GAE1), 11.9% for CTFS (GAE3), 11.1% for FSTC (GAE2), 25.7% for GL (GAE1), 2.3% for CE (GAE1), 14.3% for SB (GAE3) and 15.2% for CZ (GAE1). Despite a substantial proportion of variance being explained by epistatic effects for some traits, the prediction accuracies were similar or lower for GAE models compared with pedigree models and genomic models without epistatic effects. Although the prediction accuracy of direct genomic values did not change significantly between the three variations of the epistatic genetic relationship matrix used, removing the interaction of the markers with themselves reduced the confounding between additive and additive by additive epistatic effects. These results suggest that epistatic genetic effects contribute to the variance of some fertility and calving traits in Holstein cattle. However, the inclusion of epistatic genetic effects in the genomic prediction of these traits is complex and warrant further investigation. [ABSTRACT FROM AUTHOR]
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- 2023
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130. A genome‐wide comparison between selected and unselected Valle del Belice sheep reveals differences in population structure and footprints of recent selection.
- Author
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Ben Jemaa, Slim, Tolone, Marco, Sardina, Maria Teresa, Di Gerlando, Rosalia, Chessari, Giorgio, Criscione, Andrea, Persichilli, Christian, Portolano, Baldassare, and Mastrangelo, Salvatore
- Subjects
MILK yield ,SHEEP ,SINGLE nucleotide polymorphisms ,ANIMAL breeds ,ANIMAL breeding ,SHEEP breeding ,GENOMES ,SHEEP breeds - Abstract
About three decades of breeding and selection in the Valle del Belìce sheep are expected to have left several genomic footprints related to milk production traits. In this study, we have assembled a dataset with 451 individuals of the Valle del Belìce sheep breed: 184 animals that underwent directional selection for milk production and 267 unselected animals, genotyped for 40,660 single‐nucleotide polymorphisms (SNPs). Three different statistical approaches, both within (iHS and ROH) and between (Rsb) groups, were used to identify genomic regions potentially under selection. Population structure analyses separated all individuals according to their belonging to the two groups. A total of four genomic regions on two chromosomes were jointly identified by at least two statistical approaches. Several candidate genes for milk production were identified, corroborating the polygenic nature of this trait and which may provide clues to potential new selection targets. We also found candidate genes for growth and reproductive traits. Overall, the identified genes may explain the effect of selection to improve the performances related to milk production traits in the breed. Further studies using high‐density array data, would be particularly relevant to refine and validate these results. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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131. Evaluation of Linear Programming and Optimal Contribution Selection Approaches for Long-Term Selection on Beef Cattle Breeding.
- Author
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Zheng, Xu, Wang, Tianzhen, Niu, Qunhao, Wu, Jiayuan, Zhao, Zhida, Gao, Huijiang, Li, Junya, and Xu, Lingyang
- Subjects
BEEF cattle breeds ,LINEAR programming ,CATTLE breeding ,BEEF cattle ,CATTLE breeds ,SPAWNING - Abstract
Simple Summary: The effect of optimized mating methods for long-term selection has not been studied in cattle breeding. In this study, the linear programming and optimal contribution selection methods on the genetic gain and inbreeding level of beef cattle were explored and evaluated using a simulation strategy. Our results showed that the linear programming method can effectively improve the genetic gain in the population during long-term selection in the breeding process, and the optimal contribution selection method can maintain a balance between improving genetic gain and controlling inbreeding level. Our findings can provide theoretical guidance for the long-term and sustainable genetic gain in breeding populations in farm animals. The optimized selection method can maximize the genetic gain in offspring under the premise of controlling the inbreeding level of the population. At present, genetic gain has been largely improved by using genomic selection in multiple farm animals. However, the design of the optimal selection method and assessment of its effects during long-term selection in beef cattle breeding are yet to be fully explored. In this study, a simulated beef cattle population was constructed, and 15 generations of simulated breeding were carried out using the linear programming breeding strategy (LP) and optimal contribution selection strategy (OCS), respectively. The truncation selection strategy (TS−I and TS−II) was used as the control. During the breeding process, genetic parameters including genetic gain, average kinship coefficient, QTL effect variance, and average observed heterozygosity were calculated and compared across generations. Our results showed that the LP method can significantly improve the genetic gain in the population, especially the genetic performance of the traits with high heritability and the traits with high weight in the breeding process, but the inbreeding level of the population is higher under LP strategy. Although the genetic gain in the population under the OCS strategy is lower than the TS−II strategy, this method can effectively control the inbreeding level of the population. Our findings also suggest that the LP and OCS method can be used as an effective means to improve genetic gain, while the OCS method is a more ideal method to obtain sustainable genetic gain during long-term selection. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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132. Direct Synthesis of CuPd Icosahedra Supercrystals Studied by In Situ X-Ray Scattering.
- Author
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Derelli D, Frank K, Grote L, Mancini F, Dippel AC, Gutowski O, Nickel B, and Koziej D
- Abstract
Nanocrystal self-assembly into supercrystals provides a versatile platform for creating novel materials and devices with tailored properties. While common self-assembly strategies imply the use of purified nanoparticles after synthesis, conversion of chemical precursors directly into nanocrystals and then supercrystals in simple procedures has been rarely reported. Here, the nucleation and growth of CuPd icosahedra and their consecutive assembly into large closed-packed face-centered cubic (fcc) supercrystals are studied. To this end, the study simultaneously and in situ measures X-ray total scattering with pair distribution function analysis (TS-PDF) and small-angle X-ray scattering (SAXS). It is found that the supercrystals' formation is preceded by an intermediate dense phase of nanocrystals displaying short-range order (SRO). It is further shown that the organization of oleic acid/oleylamine surfactants into lamellar structures likely drives the emergence of the SRO phase and later of the supercrystals by reducing the volume accessible to particle diffusion. The supercrystals' formation as well as their disassembly are triggered by temperature. The study demonstrates that ordering of solvent molecules can be crucial in the direct synthesis of supercrystals. The study also provides a general approach to investigate novel preparation routes of supercrystals in situ and across several length scales via X-ray scattering., (© 2024 The Authors. Small published by Wiley‐VCH GmbH.)
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- 2024
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133. Evolutionary Optimized, Monocrystalline Gold Double Wire Gratings as a Novel SERS Sensing Platform.
- Author
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Sweedan AO, Pavan MJ, Schatz E, Maaß H, Tsega A, Tzin V, Höflich K, Mörk P, Feichtner T, and Bashouti MY
- Abstract
Achieving reliable and quantifiable performance in large-area surface-enhanced Raman spectroscopy (SERS) substrates poses a formidable challenge, demanding signal enhancement while ensuring response uniformity and reproducibility. Conventional SERS substrates often made of inhomogeneous materials with random resonator geometries, resulting in multiple or broadened plasmonic resonances, undesired absorptive losses, and uneven field enhancement. These limitations hamper reproducibility, making it difficult to conduct comparative studies with high sensitivity. This study introduces an innovative approach that addresses these challenges by utilizing monocrystalline gold flakes to fabricate well-defined plasmonic double-wire resonators through focused ion-beam lithography. Inspired by biological strategy, the double-wire grating substrate (DWGS) geometry is evolutionarily optimized to maximize the SERS signal by enhancing both excitation and emission processes. The use of monocrystalline material minimizes absorption losses and ensures shape fidelity during nanofabrication. DWGS demonstrates notable reproducibility (RSD = 6.6%), repeatability (RSD = 5.6%), and large-area homogeneity > 10
4 µm2 . It provides a SERS enhancement for sub-monolayer coverage detection of 4-Aminothiophenol analyte. Furthermore, DWGS demonstrates reusability, long-term stability on the shelf, and sustained analyte signal stability over time. Validation with diverse analytes, across different states of matter, including biological macromolecules, confirms the sensitive and reproducible nature of DWGSs, thereby establishing them as a promising platform for future sensing applications., (© 2024 The Authors. Small published by Wiley‐VCH GmbH.)- Published
- 2024
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134. Interlayer Polymerization to Construct a Fully Conjugated Covalent Organic Framework as a Metal-Free Oxygen Reduction Reaction Catalyst for Anion Exchange Membrane Fuel Cells.
- Author
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Chen Z, Fang P, Zou X, Shi Z, Zhang J, Sun Z, Guo S, and Yan F
- Abstract
Two-dimensional (2D) covalent organic frameworks (COFs) have a multilayer skeleton with a periodic π-conjugated molecular array, which can facilitate charge carrier transport within a COF layer. However, the lack of an effective charge carrier transmission pathway between 2D COF layers greatly limits their applications in electrocatalysis. Herein, by employing a side-chain polymerization strategy to form polythiophene along the nanochannels, a conjugated bridge is constructed between the COF layers. The as-synthesized fully conjugated COF (PTh-COF) exhibits high oxygen reduction reaction (ORR) activity with narrowed energy band gaps. Correspondingly, PTh-COF is tested as a metal-free cathode catalyst for anion exchange membrane fuel cells (AEMFCs) which showed a maximum power density of 176 mW cm
-2 under a current density of 533 mA cm-2 . The density functional theory (DFT) calculation reveals that interlayer conjugated polythiophene optimizes the electron cloud distribution, which therefore enhances the ORR performance. This work not only provides new insight into the construction of a fully conjugated covalent organic framework but also promotes the development of new metal-free ORR catalysts., (© 2024 Wiley‐VCH GmbH.)- Published
- 2024
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135. Microporous Materials in Polymer Electrolytes: The Merit of Order.
- Author
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Xu M, Li D, Feng Y, Yuan Y, Wu Y, Zhao H, Kumar RV, Feng G, and Xi K
- Abstract
Solid-state batteries (SSBs) have garnered significant attention in the critical field of sustainable energy storage due to their potential benefits in safety, energy density, and cycle life. The large-scale, cost-effective production of SSBs necessitates the development of high-performance solid-state electrolytes. However, the manufacturing of SSBs relies heavily on the advancement of suitable solid-state electrolytes. Composite polymer electrolytes (CPEs), which combine the advantages of ordered microporous materials (OMMs) and polymer electrolytes, meet the requirements for high ionic conductivity/transference number, stability with respect to electrodes, compatibility with established manufacturing processes, and cost-effectiveness, making them particularly well-suited for mass production of SSBs. This review delineates how structural ordering dictates the fundamental physicochemical properties of OMMs, including ion transport, thermal transfer, and mechanical stability. The applications of prominent OMMs are critically examined, such as metal-organic frameworks, covalent organic frameworks, and zeolites, in CPEs, highlighting how structural ordering facilitates the fulfillment of property requirements. Finally, an outlook on the field is provided, exploring how the properties of CPEs can be enhanced through the dimensional design of OMMs, and the importance of uncovering the underlying "feature-function" mechanisms of various CPE types is underscored., (© 2024 Wiley‐VCH GmbH.)
- Published
- 2024
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136. An association weight matrix identified biological pathways associated with bull fertility traits in a multi-breed population.
- Author
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Tan WLA, Hudson NJ, Porto Neto LR, Reverter A, Afonso J, and Fortes MRS
- Subjects
- Male, Animals, Cattle genetics, Cattle physiology, Phenotype, Gene Regulatory Networks, Fertility genetics, Polymorphism, Single Nucleotide
- Abstract
Using seven indicator traits, we investigated the genetic basis of bull fertility and predicted gene interactions from SNP associations. We used percent normal sperm as the key phenotype for the association weight matrix-partial correlation information theory (AWM-PCIT) approach. Beyond a simple list of candidate genes, AWM-PCIT predicts significant gene interactions and associations for the selected traits. These interactions formed a network of 537 genes: 38 genes were transcription cofactors, and 41 genes were transcription factors. The network displayed two distinct clusters, one with 294 genes and another with 243 genes. The network is enriched in fertility-associated pathways: steroid biosynthesis, p53 signalling, and the pentose phosphate pathway. Enrichment analysis also highlighted gene ontology terms associated with 'regulation of neurotransmitter secretion' and 'chromatin formation'. Our network recapitulates some genes previously implicated in another network built with lower-density genotypes. Sequence-level data also highlights additional candidate genes relevant to bull fertility, such as FOXO4, FOXP3, GATA1, CYP27B1, and EBP. A trio of regulatory genes-KDM5C, LRRK2, and PME-was deemed core to the network because of their overarching connections. This trio probably influences bull fertility through their interaction with genes, both known and unknown as to their role in male fertility. Future studies may target the trio and their target genes to enrich our understanding of male fertility further., (© 2024 The Authors. Animal Genetics published by John Wiley & Sons Ltd on behalf of Stichting International Foundation for Animal Genetics.)
- Published
- 2024
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137. Multiplexable and Scalable Aqueous Synthesis Platform for Oleate-Based, Bilayer-Coated Gold Nanoparticles.
- Author
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Backhaus A, Albrecht J, Alzhanova G, Long A, Arnold W, Lee J, Tse HY, Su TT, Cruz-Gomez S, Lee SSS, Menges F, Parent LR, Ratjen L, Burtness B, Fortner JD, and Zimmerman JB
- Subjects
- Water chemistry, Lipid Bilayers chemistry, Gold chemistry, Metal Nanoparticles chemistry, Oleic Acid chemistry
- Abstract
Despite gold-based nanomaterials having a unique role in nanomedicine, among other fields, synthesis limitations relating to reaction scale-up and control result in prohibitively high gold nanoparticle costs. In this work, a new preparation procedure for lipid bilayer-coated gold nanoparticles in water is presented, using sodium oleate as reductant and capping agent. The seed-free synthesis not only allows for size precision (8-30 nm) but also remarkable particle concentration (10 mm Au). These reaction efficiencies allow for multiplexing and reaction standardization in 96-well plates using conventional thermocyclers, in addition to simple particle purification via microcentrifugation. Such a multiplexing approach also enables detailed spectroscopic investigation of the nonlinear growth process and dynamic sodium oleate/oleic acid self-assembly. In addition to scalability (at gram-level), resulting gold nanoparticles are stable at physiological pH, in common cell culture media, and are autoclavable. To demonstrate the versatility and applicability of the reported method, a robust ligand exchange with thiolated polyethylene glycol analogues is also presented., (© 2024 Wiley‐VCH GmbH.)
- Published
- 2024
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138. Die momentane Struktur des Wanddruckes einer turbulenten Grenzschichtströmung.
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Emmerling, R., Meier, G. E. A., and Dinkelacker, A.
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- 1974
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139. Genome-Wide Association Study of Lactation Traits in Chinese Holstein Cows in Southern China.
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Su, Minqiang, Lin, Xiaojue, Xiao, Zupeng, She, Yuanhang, Deng, Ming, Liu, Guangbin, Sun, Baoli, Guo, Yongqing, Liu, Dewu, and Li, Yaokun
- Subjects
MILK proteins ,GENOME-wide association studies ,CATTLE genetics ,LOCUS (Genetics) ,LACTATION ,COWS ,CATTLE - Abstract
Simple Summary: Lactation traits are economically important traits in dairy production, with milk yield, milk fat percentage, and milk protein percentage being the main indicators of cow performance and milk quality. The interaction between environment and genetics has a great influence on the performance of dairy cows. Cows are susceptible to heat stress under conditions of high temperature and humidity, which in turn affects lactation traits. Therefore, the aim of this study was to identify single-nucleotide polymorphism loci and candidate genes related to lactation traits in Holstein dairy cows under conditions of high temperature and high humidity in southern China. Our study identified 23 single-nucleotide polymorphic sites significantly associated with lactation traits, and 10 key candidate genes associated with lactation traits. The results of this study may provide a theoretical basis for the molecular marker breeding of Chinese Holstein cows in high-temperature and high-humidity environments in southern China. Lactation traits are economically important for dairy cows. Southern China has a high-temperature and high-humidity climate, and environmental and genetic interactions greatly impact dairy cattle performance. The aim of this study was to identify novel single-nucleotide polymorphism sites and novel candidate genes associated with lactation traits in Chinese Holstein cows under high-temperature and humidity conditions in southern China. A genome-wide association study was performed for the lactation traits of 392 Chinese Holstein cows, using GGP Bovine 100 K SNP gene chips. Some 23 single nucleotide polymorphic loci significantly associated with lactation traits were screened. Among them, 16 were associated with milk fat rate, 7 with milk protein rate, and 3 with heat stress. A quantitative trait locus that significantly affects milk fat percentage in Chinese Holstein cows was identified within a window of approximately 0.5 Mb in the region of 0.4–0.9 Mb on Bos taurus autosome 14. According to Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses, ten genes (DGAT1, IDH2, CYP11B1, GFUS, CYC1, GPT, PYCR3, OPLAH, ALDH1A3, and NAPRT) associated with lactation fat percentage, milk yield, antioxidant activity, stress resistance, and inflammation and immune response were identified as key candidates for lactation traits. The results of this study will help in the development of an effective selection and breeding program for Chinese Holstein cows in high-temperature and humidity regions. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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140. Nanozyme‐Catalyzed Metasurface Plasmon Sensor‐Based Portable Ultrasensitive Optical Quantification Platform for Cancer Biomarker Screening.
- Author
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Li, Rui, Fan, Hongli, Zhou, Hanlin, Chen, Youqian, Yu, Qingcai, Hu, Wenjun, Liu, Gang L., and Huang, Liping
- Subjects
EARLY detection of cancer ,SURFACE plasmon resonance ,ENZYME-linked immunosorbent assay ,TUMOR markers ,CARCINOEMBRYONIC antigen ,ALPHA fetoproteins - Abstract
Developing plasmonic biosensors that are low‐cost, portable, and relatively simple to operate remains challenging. Herein, a novel metasurface plasmon‐etch immunosensor is described, namely a nanozyme‐linked immunosorbent surface plasmon resonance biosensor, for the ultrasensitive and specific detection of cancer biomarkers. Gold‐silver composite nano cup array metasurface plasmon resonance chip and artificial nanozyme‐labeled antibody are used in two‐way sandwich analyte detection. Changes in the biosensor's absorption spectrum are measured before and after chip surface etching, which can be applied to immunoassays without requiring separation or amplification. The device achieved a limit of alpha‐fetoprotein (AFP) detection < 21.74 fM, three orders of magnitude lower than that of commercial enzyme‐linked immunosorbent assay kits. Additionally, carcinoembryonic antigen (CEA) and carbohydrate antigen 125 (CA125) are used for quantitative detection to verify the universality of the platform. More importantly, the accuracy of the platform is verified using 60 clinical samples; compared with the hospital results, the three biomarkers achieve high sensitivity (CEA: 95.7%; CA125: 90.9%; AFP: 86.7%) and specificity (CEA: 97.3%; CA125: 93.9%; AFP: 97.8%). Due to its rapidity, ease of use, and high throughput, the platform has the potential for high‐throughput rapid detection to facilitate cancer screening or early diagnostic testing in biosensing. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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141. Biological soil crusts on agricultural soils of mesic regions promote microbial cross-kingdom co-occurrences and nutrient retention.
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Kurth, Julia Katharina, Albrecht, Martin, Glaser, Karin, Karsten, Ulf, Vestergaard, Gisle, Armbruster, Martin, Kublik, Susanne, Schmid, Christoph A. O., Schloter, Michael, and Schulz, Stefanie
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CRUST vegetation ,AGRICULTURE ,SOIL management ,ORGANIC fertilizers ,SOILS ,ARID regions - Abstract
Introduction: Biological soil crusts (biocrusts) are known as biological hotspots on undisturbed, nutrient-poor bare soil surfaces and until now, are mostly observed in (semi-) arid regions but are currently poorly understood in agricultural systems. This is a crucial knowledge gap because managed sites of mesic regions can quickly cover large areas. Thus, we addressed the questions (i) if biocrusts from agricultural sites of mesic regions also increase nutrients and microbial biomass as their (semi-) arid counterparts, and (ii) how microbial community assemblage in those biocrusts is influenced by disturbances like different fertilization and tillage regimes. Methods: We compared phototrophic biomass, nutrient concentrations as well as the abundance, diversity and co-occurrence of Archaea, Bacteria, and Fungi in biocrusts and bare soils at a site with low agricultural soil quality. Results and Discussion: Biocrusts built up significant quantities of phototrophic and microbial biomass and stored more nutrients compared to bare soils independent of the fertilizer applied and the tillage management. Surprisingly, particularly low abundant Actinobacteria were highly connected in the networks of biocrusts. In contrast, Cyanobacteria were rarely connected, which indicates reduced importance within the microbial community of the biocrusts. However, in bare soil networks, Cyanobacteria were the most connected bacterial group and, hence, might play a role in early biocrust formation due to their ability to, e.g., fix nitrogen and thus induce hotspot-like properties. The microbial community composition differed and network complexity was reduced by conventional tillage. Mineral and organic fertilizers led to networks that are more complex with a higher percentage of positive correlations favoring microbe-microbe interactions. Our study demonstrates that biocrusts represent a microbial hotspot on soil surfaces under agricultural use, which may have important implications for sustainable management of such soils in the future. [ABSTRACT FROM AUTHOR]
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- 2023
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142. Heterogeneity of variance and genetic parameters for milk production in cattle, using Bayesian inference.
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Júnior, Raimundo Nonato Colares Camargo, Fernandes, Luane da Silva, do Carmo Panetto, João Cláudio, Barbosa da Silva, Marcos Vinicius Gualberto, de Araújo, Cláudio Vieira, Maciel e Silva, André Guimarães, Felipe Marques, José Ribamar, Silva, Welligton Conceição da, de Araújo, Simone Inoe, Castro, Sâmia Rubielle Silva de, Silva, Lilian Kátia Ximenes, Castro, Simone Vieira, and Júnior, José de Brito Lourenço
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MILK yield ,BAYESIAN field theory ,FIXED effects model ,GIBBS sampling ,GENETIC correlations ,HETEROGENEITY ,CATTLE breeds ,HOLSTEIN-Friesian cattle - Abstract
The goal of this study was to verify the effect of heterogeneity of variance (HV) on milk production in up to 305 days of lactation (L305) of daughters of Girolando, Gir and Holstein sires, as well as in the genetic evaluation of these sires and their progenies. in Brazil. The model included contemporary groups (consisting of herd, year and calving season) as a fixed effect, cow age at calving (linear and quadratic effects) and heterozygosity (linear effect) as covariates, in addition to the random effects of direct additive genetic and environmental, permanent and residual. The first analysis consisted of the single-trait animal model, with L305 records (disregarding HV). The second considered classes of standard deviations (SD): two-trait model including low and high classes (considering HV), according to the standardized means of L305 for herd-year of calving. The low SD class was composed of herds with SD equal to or less than zero and the high class with positive SD values. Estimates of (co)variance components and breeding values were obtained separately for each scenario using Bayesian inference via Gibbs sampling. Different heritability was estimated. Higher for the high DP class in the Gir (0.20) and Holstein (0.15) breeds, not occurring the same in the Girolando breed, with a lower value among the classes for the high DP (0.10). High values of genetic correlations were also found between low and high SD classes (0.88; 0.85 and 0.79) for the Girolando, Gir and Holstein breeds, respectively. Like the order correlations (Spearman) which were also high for the three breeds analyzed (equal to or above 0.92). Thus, the presence of HV had a smaller impact for L305 and did not affect the genetic evaluation of sires. [ABSTRACT FROM AUTHOR]
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- 2023
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143. Regulating the Electron Structure of Covalent Organic Frameworks by Strong Electron‐Withdrawing Nitro to Construct Specific Li+ Oriented Channel.
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Yang, Yongxin, Zhang, Conghui, Zhao, Genfu, An, Qi, Mei, Zhi‐yuan, Sun, Yongjiang, Xu, Qijun, Wang, Xiaofeng, and Guo, Hong
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IONIC conductivity ,ELECTRIC charge ,ELECTRONS ,SURFACE charges ,SOLID electrolytes ,ELEVATING platforms - Abstract
The growth of disordered lithium dendrite and the notorious reaction between Li and electrolyte hamper the practical application of Li metal batteries (LMBs). Herein, an artificial solid electrolyte interphase (ASEI) constructed by a nitro‐functionalized covalent organic framework (NO2‐COF) is designed to regulate Li+ deposition and stable Li anodes. Strong electron‐withdrawing nitro groups can gather the surrounding electrons of connected monomer by the donor‐acceptor (D‐A) effect, thus regulating the electron structure of the covalent organic framework (COF) and constructing a specific cation‐oriented channel. The uniform Li+ deposition and inhibition of Li dendrites are achieved under such a high‐selective Li+ transportation channel and regulated surface electric charge. In addition, the nitro can also be reduced to NO2− and further react with Li to produce high ionic‐conductivity Li3N and LiNxOy during the charging/discharging, which contributes to the migration of Li+. As a result, NO2‐COF‐modified symmetrical batteries realize an ultra‐long cycling life of more than 6000 h under a current density of 5 mA cm−2 compared to bare Li and TpBD‐COF/Li (without nitro). The full cells coupled with LiFePO4 stably cycle 1000 times with a capacity retention of 91%. Hence, effectively optimizing electron structure by the donor‐acceptor (D‐A) effect provides a better platform to elevate the performance of LMB. [ABSTRACT FROM AUTHOR]
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- 2023
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144. Genomic dominance variance analysis of health and milk production traits in German Holstein cattle.
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Schneider, Helen, Heise, Johannes, Tetens, Jens, Thaller, Georg, Wellmann, Robin, and Bennewitz, Jörn
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HOLSTEIN-Friesian cattle ,MILK yield ,HEALTH of cattle ,ANALYSIS of variance ,SOCIAL dominance ,DAIRY cattle ,MILK contamination ,VARIANCES - Abstract
Genomic analyses commonly explore the additive genetic variance of traits. The non‐additive variance, however, is usually small but often significant in dairy cattle. This study aimed at dissecting the genetic variance of eight health traits that recently entered the total merit index in Germany and the somatic cell score (SCS), as well as four milk production traits by analysing additive and dominance variance components. The heritabilities were low for all health traits (between 0.033 for mastitis and 0.099 for SCS), and moderate for the milk production traits (between 0.261 for milk energy yield and 0.351 for milk yield). For all traits, the contribution of dominance variance to the phenotypic variance was low, varying between 0.018 for ovarian cysts and 0.078 for milk yield. Inbreeding depression, inferred from the SNP‐based observed homozygosity, was significant only for the milk production traits. The contribution of dominance variance to the genetic variance was larger for the health traits, ranging from 0.233 for ovarian cysts to 0.551 for mastitis, encouraging further studies that aim at discovering QTLs based on their additive and dominance effects. [ABSTRACT FROM AUTHOR]
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- 2023
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145. Genomic prediction of service sire effect on female reproductive performance in Holstein cattle: A comparison between different methods, validation population and marker densities.
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Shi, Rui, Chen, Ziwei, Su, Guosheng, Luo, Hanpeng, Liu, Lin, Guo, Gang, and Wang, Yachun
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HOLSTEIN-Friesian cattle ,POPULATION density ,DAIRY cattle ,CATTLE reproduction ,FORECASTING ,SIMMENTAL cattle ,STILLBIRTH - Abstract
Reproductive traits of dairy cattle are bound to the actual efficiency of farm operation, which therefore show great economic importance. Among them, some traits were deemed to be simultaneously affected by service sire and mating cow. Service sires are proved to play an important role in reproduction process of cows. However, limited study explored the genetic effect of service sire (GESS), let alone the genomic prediction of this effect. In the present study, 2244 genotyped bulls together with phenotypic records were used to predict the GESS on conception rate, 56‐day non‐return rate, calving ease, stillbirth and gestation length. The feasibilities of multi‐step genomic best linear unbiased predictor (msGBLUP) and single‐step genomic best linear unbiased predictor (ssGBLUP) were investigated under different scenarios, that is, different marker densities and validation population. The predictive accuracies and unbiasedness for GESS ranged from 0.159 to 0.647 and from 0.202 to 2.018, respectively, when validated on young bulls, while the accuracies and unbiasedness ranged from 0.409 to 0.802 and 0.333 to 1.146 when validated on random split data sets. It is feasible to predict GESS on reproductive traits by using a linear mixed model and genomic data, and high‐density marker panel had limited contribution to the prediction. This research investigated the potential factors that influence the genomic prediction of GESS on reproductive traits and indicated the possibility of genomic selection on GESS, both in ideal and practical circumstances. [ABSTRACT FROM AUTHOR]
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- 2023
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146. Managing burnout from engagement-derived acting strategy.
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Prentice, Catherine, Snell, Lan, and Sok, Phyra
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- 2023
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147. A Frame-by-Frame Glance at Membrane Fusion Mechanisms: From Viral Infections to Fertilization.
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Azimi, Farshad C., Dean, Trevor T., Minari, Karine, Basso, Luis G. M., Vance, Tyler D. R., and Serrão, Vitor Hugo B.
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MEMBRANE fusion ,VIRUS diseases ,VIRAL envelopes ,VIRAL proteins ,BIOLOGICAL membranes ,PLANT viruses ,SYNTHETIC biology - Abstract
Viral entry and fertilization are distinct biological processes that share a common mechanism: membrane fusion. In viral entry, enveloped viruses attach to the host cell membrane, triggering a series of conformational changes in the viral fusion proteins. This results in the exposure of a hydrophobic fusion peptide, which inserts into the host membrane and brings the viral and host membranes into close proximity. Subsequent structural rearrangements in opposing membranes lead to their fusion. Similarly, membrane fusion occurs when gametes merge during the fertilization process, though the exact mechanism remains unclear. Structural biology has played a pivotal role in elucidating the molecular mechanisms underlying membrane fusion. High-resolution structures of the viral and fertilization fusion-related proteins have provided valuable insights into the conformational changes that occur during this process. Understanding these mechanisms at a molecular level is essential for the development of antiviral therapeutics and tools to influence fertility. In this review, we will highlight the biological importance of membrane fusion and how protein structures have helped visualize both common elements and subtle divergences in the mechanisms behind fusion; in addition, we will examine the new tools that recent advances in structural biology provide researchers interested in a frame-by-frame understanding of membrane fusion. [ABSTRACT FROM AUTHOR]
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- 2023
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148. Characteristics of meat production traits in the Hungarian Simmental herd selected for the simultaneous improvement of milk and meat production.
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Polgár, József Péter, Szabó, Ferenc, Kovács, Ákos, Kovács-Mesterházy, Zoltán, and Bene, Szabolcs
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MILK yield ,PARAMETERS (Statistics) ,ANIMAL herds ,REGRESSION analysis ,WEIGHT gain - Abstract
Phenotypic and genetic trends, population genetic parameters, and the heritability and breeding values of the fattening and slaughter traits – namely muscularity score (MUS), final fattening weight (FFW), weight gain per day of life (WGD), slaughter weight (SLW), carcass weight (CAR), dressing percentage (DRP), bone–meat production per day of life (BMP), SEUROP conformation and fat coverage score (EUR, FAT), and meat percentage (MEP) – of 1162 Hungarian Simmental bulls were evaluated with the progeny test database of the Association of Hungarian Simmental Breeders. Trends were calculated by weighted linear regression analysis, while the population genetic parameters and breeding values used the BLUP (best linear unbiased prediction) animal model and general linear model (GLM). According to the results, the lowest heritability value (h2=0.23) was found in FAT. In the case of MUS, EUR and MEP, the values were moderate (h2=0.32 , 0.26 and 0.32), and in the case of the other traits, high heritability values (h2 = 0.42–0.52) were estimated. The phenotypic trends of the fattening and slaughter traits of bull progeny born between 2001 and 2019 showed a stagnant direction. Between the sires, the differences in the breeding values for some traits (WDG, CAR and BMP) were large, and with other traits (DRP, EUR and FAT), small differences were found. According to the data of the genetic-trend calculation, the steepness values of the evaluated traits were positive, and the genetic trends showed a slightly improving direction in the estimated period. [ABSTRACT FROM AUTHOR]
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- 2023
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149. Approximating prediction error variances and accuracies of estimated breeding values from a SNP–BLUP model for genotyped individuals.
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Li, L., Gurman, P. M., Swan, A. A., and Tier, B.
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Context: The accuracy of estimated breeding values (EBVs) is an important metric in genetic evaluation systems in Australia. With reduced costs for DNA genotyping due to advances in molecular technology, more and more animals have been genotyped for EBVs. The rapid increase in genotyped animals has grown beyond the capacity of the current genomic best linear unbiased prediction (GBLUP) method. Aims: This study aimed to implement and evaluate a new single-nucleotide polymorphism (SNP)–BLUP model for the computation of prediction error variances (PEVs) to accommodate the increasing number of genotyped animals in beef and sheep single-step genetic evaluations in Australia. Methods: First, the equivalence of PEV estimates obtained from both GBLUP and SNP-BLUP models was demonstrated. Second, the computing resources required by each model were compared. Third, within the SNP-BLUP model, the PEVs obtained from subsets of SNP were evaluated against those from the complete dataset. Fourth, the new model was tested in the Australian Merino sheep and Angus beef cattle datasets. Key results: The PEVs of genotyped animals calculated from the SNP–BLUP model were equivalent to the PEVs derived from the GBLUP model. The SNP–BLUP model used much less time than did the GBLUP model when the number of genotyped animals was larger than the number of SNPs. Within the SNP–BLUP model, the running time could be further reduced using a subset of SNPs makers, with high correlations (>0.97) observed between the PEVs obtained from the complete dataset and subsets. However, it is important to exercise caution when selecting the size of the subsets in the SNP–BLUP model, as reducing the subset size may result in an increase in the bias of the PEVs. Conclusions: The new SNP-BLUP model for PEV calculation for genotyped animals outperforms the current GBLUP model. A new accuracy program has been developed for the Australian genetic evaluation system which uses much less memory and time to compute accuracies. Implications: The new model has been implemented in routine sheep and beef genetic evaluation systems in Australia. This development ensures that the calculation of accuracies is sustainable, with increasing numbers of animals with genotypes. The accuracy of estimated breeding values is routinely provided to breeders as part of genetic evaluations in Australia. A new method to approximate accuracies using genomic information has been developed and is presented in this paper. The new model has been implemented in Australia's routine sheep and beef genetic evaluation systems. This development ensures that the calculation of accuracies is sustainable with increasing numbers of animals with genotypes. [ABSTRACT FROM AUTHOR]
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- 2023
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150. The impact of QTL sharing and properties on multi-breed GWAS in cattle: a simulation study.
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van den Berg, Irene and MacLeod, Iona M.
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Context: Genome-wide association studies (GWAS) and meta-analyses can be used to detect variants that affect quantitative traits. Multi-breed GWAS may lead to increased power and precision compared with within-breed GWAS. However, not all causal variants segregate in all breeds, and variants that segregate in multiple breeds may have different allele frequencies in different breeds. It is not known how differences in minor allele frequency (MAF) affect multi-breed GWAS and meta-analyses. Aims: Our aim was to study the impact of differences in MAF at causal variants on mapping power and precision. Methods: We used real imputed sequence data to simulate quantitative traits in three dairy cattle breeds. Causal variants (QTN) were simulated according to the following three scenarios: variants with a similar MAF in all breeds, variants with a lower MAF in one breed than the other, and variants that each only segregated in one of the breeds. We analysed the simulated quantitative traits with three methods to compare mapping power and precision: within-breed GWAS, multi-breed GWAS and meta-analysis. Key results: Our results indicated that the multi-breed analyses (multi-breed GWAS or meta-analysis) detected similar or more QTN than did within-breed GWAS, with improved mapping precision in most scenarios. However, when MAF differed between breeds, or variants were breed specific, the advantage of the multi-breed analyses over within breed GWAS decreased. Regardless of the type of QTN (similar MAF in all breeds, different MAF in different breeds, or only segregating in one breed), multi-breed GWAS and meta-analyses performed similar or better than did within-breed GWAS, demonstrating the benefits of multi-breed GWAS. We did not find large differences between the results obtained with the meta-analysis and multi-breed GWAS, confirming that a meta-analysis can be a suitable approximation of a multi-breed GWAS. Conclusions: Our results showed that multi-breed GWAS and meta-analysis generally detect more QTN with improved precision than does within-breed GWAS, and that even with differences in MAF, multi-breed analyses did not perform worse than within-breed GWAS. Implications: Our study confirmed the benefits of multi-breed GWAS and meta-analysis. Combining data from multiple cattle breeds may help identify variants that affect important quantitative traits. However, when these variants occur with different allele frequencies in different breeds, the advantage of multi-breed analyses over within breed analyses can reduce. Our results demonstrated the potential benefits and limitations of multi-breed analyses. [ABSTRACT FROM AUTHOR]
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- 2023
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