1,474 results on '"Efron P"'
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102. Two Modeling Strategies for Empirical Bayes Estimation
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Efron, Bradley
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Statistics - Methodology - Abstract
Empirical Bayes methods use the data from parallel experiments, for instance, observations $X_k\sim\mathcal{N}(\Theta_k,1)$ for $k=1,2,\ldots,N$, to estimate the conditional distributions $\Theta_k|X_k$. There are two main estimation strategies: modeling on the $\theta$ space, called "$g$-modeling" here, and modeling on the $x$ space, called "$f$-modeling." The two approaches are described and compared. A series of computational formulas are developed to assess their frequentist accuracy. Several examples, both contrived and genuine, show the strengths and limitations of the two strategies., Comment: Published in at http://dx.doi.org/10.1214/13-STS455 the Statistical Science (http://www.imstat.org/sts/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2014
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103. Longitudinal Trajectories of Sustained Attention Development in Children and Adolescents with ADHD
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Thomson, Phoebe, Vijayakumar, Nandita, Johnson, Katherine A., Malpas, Charles B., Sciberras, Emma, Efron, Daryl, Hazell, Philip, and Silk, Timothy J.
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- 2020
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104. Clinical trials with cannabis medicines—guidance for ethics committees, governance officers and researchers to streamline ethics applications and ensuring patient safety: considerations from the Australian experience
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Jennifer H. Martin, Courtney Hill, Anna Walsh, Daryl Efron, Kaitlyn Taylor, Michael Kennedy, Rachel Galettis, Paul Lightfoot, Julie Hanson, Helen Irving, Meera Agar, and Judith Lacey
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Cannabinoids ,Human research ethics ,Clinical trials ,Cannabis medicines ,Investigational medicinal product ,Governance ,Medicine (General) ,R5-920 - Abstract
Abstract With cannabis medicines now obtaining legal status in many international jurisdictions (generally on the authorisation of a medical professional), a rapid increase in consumer demand for access to cannabis as a therapeutic option in the treatment and management of a range of indications is being noted. Despite this accessibility, knowledge on optimal use is lacking. Further drug development and clinical trials at regulatory standards are necessary both if a better understanding of the efficacy of cannabis medicines, optimal product formulation and indication-specific dosing is needed and to ensure the broader quality and safety of cannabis medicines in the clinical setting. To enable this, clinical, academic and public calls for the undertaking of rigorous clinical trials to establish an evidence base for the therapeutic use of cannabis medicines have been made internationally. While this commitment to undertake human studies with cannabis medicines is welcomed, it has highlighted unique challenges, notably in the review stages of ethics and governance. This often results in lengthy delays to approval by Human Research Ethics Committees (herein ‘HREC’, Australia’s nomenclature for Institutional Review Boards) and trial commencement. A principal concern in these cases is that in contrast to clinical trials using other more conventional pharmaceutical products, trials of cannabis medicines in humans often involve the use of an investigational product prior to some (or any) of the preclinical and pharmaceutical safety issues being established. This paucity of data around product safety, potential drug interactions, continuity of supply, shelf life and product storage results in apprehension by HRECs and governance bodies to endorse trials using cannabis medicines. This manuscript draws from the experiences of Australian researchers and staff involved in clinical trials of cannabis medicines to describe some of the common difficulties that may be faced in the HREC approval process. It also presents practical advice aimed to assist researchers, HRECs and governance officers navigate this complex terrain. While the authors’ experiences are situated within the Australian setting, many of the barriers described are applicable within the international context and thus, the solutions that have been proposed are typically adaptive for use within other jurisdictions.
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- 2020
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105. deconvolveR: A G-Modeling Program for Deconvolution and Empirical Bayes Estimation
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Balasubramanian Narasimhan and Bradley Efron
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bayes deconvolution ,g-modeling ,empirical bayes ,missing species ,r package deconvolver ,Statistics ,HA1-4737 - Abstract
Empirical Bayes inference assumes an unknown prior density g(θ) has yielded (unobservables) Θ1, Θ2, ..., ΘN, and each Θi produces an independent observation Xi from pi (Xi | Θi). The marginal density fi (Xi) is a convolution of the prior g and pi. The Bayes deconvolution problem is one of recovering g from the data. Although estimation of g - so called g-modeling - is difficult, the results are more encouraging if the prior g is restricted to lie within a parametric family of distributions. We present a deconvolution approach where g is restricted to be in a parametric exponential family, along with an R package deconvolveR designed for the purpose.
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- 2020
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106. Derivation and validation of a prognostic score for neonatal mortality in Ethiopia: a case-control study
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Rishi P. Mediratta, Ashenafi Tazebew Amare, Rasika Behl, Bradley Efron, Balasubramanian Narasimhan, Alemayehu Teklu, Abdulkadir Shehibo, Mulugeta Ayalew, and Saraswati Kache
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Neonatal early warning score ,Neonatal scoring systems ,Neonatal mortality ,Newborns ,Ethiopia ,Neonatal intensive care unit ,Pediatrics ,RJ1-570 - Abstract
Abstract Background Early warning scores for neonatal mortality have not been designed for low income countries. We developed and validated a score to predict mortality upon admission to a NICU in Ethiopia. Methods We conducted a retrospective case-control study at the University of Gondar Hospital, Gondar, Ethiopia. Neonates hospitalized in the NICU between January 1, 2016 to June 31, 2017. Cases were neonates who died and controls were neonates who survived. Results Univariate logistic regression identified variables associated with mortality. The final model was developed with stepwise logistic regression. We created the Neonatal Mortality Score, which ranged from 0 to 52, from the model’s coefficients. Bootstrap analysis internally validated the model. The discrimination and calibration were calculated. In the derivation dataset, there were 207 cases and 605 controls. Variables associated with mortality were admission level of consciousness, admission respiratory distress, gestational age, and birthweight. The AUC for neonatal mortality using these variables in aggregate was 0.88 (95% CI 0.85–0.91). The model achieved excellent discrimination (bias-corrected AUC) under internal validation. Using a cut-off of 12, the sensitivity and specificity of the Neonatal Mortality Score was 81 and 80%, respectively. The AUC for the Neonatal Mortality Score was 0.88 (95% CI 0.85–0.91), with similar bias-corrected AUC. In the validation dataset, there were 124 cases and 122 controls, the final model and the Neonatal Mortality Score had similar discrimination and calibration. Conclusions We developed, internally validated, and externally validated a score that predicts neonatal mortality upon NICU admission with excellent discrimination and calibration.
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- 2020
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107. Phenotypic heterogeneity by site of infection in surgical sepsis: a prospective longitudinal study
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Julie A. Stortz, Michael C. Cox, Russell B. Hawkins, Gabriela L. Ghita, Babette A. Brumback, Alicia M. Mohr, Lyle L. Moldawer, Philip A. Efron, Scott C. Brakenridge, and Frederick A. Moore
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Surgical sepsis ,Site of infection ,Phenotypes ,Chronic critical illness ,Heterogeneity ,Long-term outcomes ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Background The role of site of infection in sepsis has been poorly characterized. Additionally, sepsis epidemiology has evolved. Early mortality has decreased, but many survivors now progress into chronic critical illness (CCI). This study sought to determine if there were significant differences in the host response and current epidemiology of surgical sepsis categorized by site of infection. Study design This is a longitudinal study of surgical sepsis patients characterized by baseline predisposition, insult characteristics, serial biomarkers, hospital outcomes, and long-term outcomes. Patients were categorized into five anatomic sites of infection. Results The 316 study patients were predominantly Caucasian; half were male, with a mean age of 62 years, high comorbidity burden, and low 30-day mortality (10%). The primary sites were abdominal (44%), pulmonary (19%), skin/soft tissue (S/ST, 17%), genitourinary (GU, 12%), and vascular (7%). Most abdominal infections were present on admission and required source control. Comparatively, they had more prolonged proinflammation, immunosuppression, and persistent organ dysfunction. Their long-term outcome was poor with 37% CCI (defined as > 14 in ICU with organ dysfunction), 49% poor discharge dispositions, and 30% 1-year mortality. Most pulmonary infections were hospital-acquired pneumonia. They had similar protracted proinflammation and organ dysfunction, but immunosuppression normalized. Long-term outcomes are similarly poor (54% CCI, 47% poor disposition, 32% 1-year mortality). S/ST and GU infections occurred in younger patients with fewer comorbidities, less perturbed immune responses, and faster resolution of organ dysfunction. Comparatively, S/ST had better long-term outcomes (23% CCI, 39% poor disposition, 13% 1-year mortality) and GU had the best (10% CCI, 20% poor disposition, 10% 1-year mortality). Vascular sepsis patients were older males, with more comorbidities. Proinflammation was blunted with baseline immunosuppression and organ dysfunction that persisted. They had the worst long-term outcomes (38% CCI, 67% poor disposition, 57% 1-year mortality). Conclusion There are notable differences in baseline predisposition, host responses, and clinical outcomes by site of infection in surgical sepsis. While previous studies have focused on differences in hospital mortality, this study provides unique insights into the host response and long-term outcomes associated with different sites of infection.
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- 2020
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108. Use and predictors of health services among Australian children with mental health problems: A national prospective study
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Harriet Hiscock, Melissa Mulraney, Daryl Efron, Gary Freed, David Coghill, Emma Sciberras, Hayley Warren, and Michael Sawyer
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children ,health service use ,medicare ,mental health ,sex ,socioeconomic status ,Psychology ,BF1-990 - Abstract
Objective Retrospective, parent‐reported data suggest that 50% of Australian children with mental health disorders miss out on care. In a national sample, we aimed to determine the proportion receiving mental health services and associated characteristics, using prospective, objective data. Method Prospective analysis of linked Medicare Benefits Scheme (MBS)‐rebated mental health service use in children aged 8–9, 10–11, and 12–13-years, from the Longitudinal Study of Australian Children K cohort (N = 4,983). Analyses were conducted separately for children scoring above the cut points on the Strength and Difficulties Questionnaire (SDQ) emotional and externalising problems subscales. Characteristics were compared using logistic regressions. Results Nine to 27% of children scoring above SDQ cut points accessed MBS‐rebated mental health services, typically from general practitioners, psychologists and paediatricians. Greater symptom severity, parent perception that child needs help, being a young boy and older were associated with increased service use. Children from more disadvantaged families or families speaking a language other than English were less likely to receive services for internalising problems. Conclusion In the first prospective, objective analysis, most children do not receive mental health services.
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- 2020
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109. Cardiovascular death and progression to end‐stage renal disease after major surgery in elderly patients
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N. Lysak, H. Hashemighouchani, A. Davoudi, N. Pourafshar, T. J. Loftus, M. Ruppert, P. A. Efron, P. Rashidi, A. Bihorac, and T. Ozrazgat‐Baslanti
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Surgery ,RD1-811 - Abstract
Background Reliable estimates for risk of cardiovascular‐specific mortality and progression to end‐stage renal disease (ESRD) among elderly patients undergoing major surgery are not available. This study aimed to develop simple risk scores to predict these events. Methods In a single‐centre cohort of elderly patients undergoing major surgery requiring hospital stay longer than 24 h, progression to ESRD and long‐term cardiovascular‐specific mortality were modelled using multivariable subdistribution hazard models, adjusting for co‐morbidity, frailty and type of surgery. Results Before surgery, 2·9 and 11·9 per cent of 16 655 patients had ESRD and chronic kidney disease (CKD) respectively. During the hospital stay, 46·9 per cent of patients developed acute kidney injury (AKI). Patients with kidney disease had a significantly higher risk of cardiovascular‐specific (CV) mortality compared with patients without kidney disease (adjusted hazard ratio (HR) for CKD without AKI 1·60, 95 per cent c.i. 1·25 to 2·01; AKI without CKD 1·70, 1·52 to 1·87; AKI with CKD 2·80, 2·50 to 3·20; ESRD 5·21, 4·32 to 6·27), as well as increased progression to ESRD (AKI without CKD 5·40, 3·44 to 8·35; CKD without AKI 8·80, 4·60 to 17·00; AKI with CKD 31·60, 19·90 to 49·90). CV Death and ESRD Risk scores were developed to predict CV mortality and progression to ESRD. Calculated CV Death and ESRD Risk scores performed well with c‐statistics: 0·77 (95 per cent c.i. 0·76 to 0·78) and 0·82 (0·78 to 0·86) respectively at 1 year. Conclusion Kidney disease in elderly patients undergoing major surgery is associated with a high risk of CV mortality and progression to ESRD. Risk scores can augment the shared decision‐making process of informed consent and identify patients requiring postoperative renal‐protective strategies.
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- 2020
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110. Uncertainty-aware deep learning in healthcare: A scoping review.
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Tyler J Loftus, Benjamin Shickel, Matthew M Ruppert, Jeremy A Balch, Tezcan Ozrazgat-Baslanti, Patrick J Tighe, Philip A Efron, William R Hogan, Parisa Rashidi, Gilbert R Upchurch, and Azra Bihorac
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Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Mistrust is a major barrier to implementing deep learning in healthcare settings. Entrustment could be earned by conveying model certainty, or the probability that a given model output is accurate, but the use of uncertainty estimation for deep learning entrustment is largely unexplored, and there is no consensus regarding optimal methods for quantifying uncertainty. Our purpose is to critically evaluate methods for quantifying uncertainty in deep learning for healthcare applications and propose a conceptual framework for specifying certainty of deep learning predictions. We searched Embase, MEDLINE, and PubMed databases for articles relevant to study objectives, complying with PRISMA guidelines, rated study quality using validated tools, and extracted data according to modified CHARMS criteria. Among 30 included studies, 24 described medical imaging applications. All imaging model architectures used convolutional neural networks or a variation thereof. The predominant method for quantifying uncertainty was Monte Carlo dropout, producing predictions from multiple networks for which different neurons have dropped out and measuring variance across the distribution of resulting predictions. Conformal prediction offered similar strong performance in estimating uncertainty, along with ease of interpretation and application not only to deep learning but also to other machine learning approaches. Among the six articles describing non-imaging applications, model architectures and uncertainty estimation methods were heterogeneous, but predictive performance was generally strong, and uncertainty estimation was effective in comparing modeling methods. Overall, the use of model learning curves to quantify epistemic uncertainty (attributable to model parameters) was sparse. Heterogeneity in reporting methods precluded the performance of a meta-analysis. Uncertainty estimation methods have the potential to identify rare but important misclassifications made by deep learning models and compare modeling methods, which could build patient and clinician trust in deep learning applications in healthcare. Efficient maturation of this field will require standardized guidelines for reporting performance and uncertainty metrics.
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- 2022
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111. How can the education sector support children’s mental health? Views of Australian healthcare clinicians
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Kate Paton, Lynn Gillam, Hayley Warren, Melissa Mulraney, David Coghill, Daryl Efron, Michael Sawyer, and Harriet Hiscock
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Medicine ,Science - Abstract
Objectives Policy makers in developed countries have long considered the education system an avenue for supporting mental health care for children. Whilst educators have identified many challenges to providing this support (e.g. non-core role, stigma, overcrowded curriculum), understanding clinicians’ views on the role of educators and schools and how clinicians and schools could work together to achieve good mental health outcomes are important questions. However, clinician voices in how schools and health should work together for children’s mental health care are frequently missing from the debate. We aimed to report clinicians’ views about how the education system could support student’s mental health and improve access to mental health care for children and adolescents. Methods 143 clinicians (approximately 35 each of child and adolescent psychiatrists, pediatricians, child psychologists and general practitioners (GPs)) from the states of Victoria and South Australia participated in semi-structured phone interviews between March 2018 and February 2019. Inductive content analysis was applied to address the broad study aims. Findings Key themes emerged: (1) The role of schools in supporting individual children; (2) School based programs to support children and families; and (3) Challenges of implementing these suggestions. Clinicians across all professional groups suggested the education system could play an important role in improving access to mental health services through harnessing existing staff or co-locating mental health clinicians. They also suggested schools could identify at risk children and implement coping and social skills programs. Conclusions Schools and educators could play a key role in prevention and early intervention of children’s mental health problems. However, before recommending exactly how to do this, key evidence gaps need to be addressed.
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- 2022
112. Overlapping but Disparate Inflammatory and Immunosuppressive Responses to SARS-CoV-2 and Bacterial Sepsis: An Immunological Time Course Analysis
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Tyler J. Loftus, Ricardo Ungaro, Marvin Dirain, Philip A. Efron, Monty B. Mazer, Kenneth E. Remy, Richard S. Hotchkiss, Luer Zhong, Rhonda Bacher, Petr Starostik, Lyle L. Moldawer, and Scott C. Brakenridge
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inflammation ,immune suppression ,ELISpot ,MDSC ,immune response ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Both severe SARS-CoV-2 infections and bacterial sepsis exhibit an immunological dyscrasia and propensity for secondary infections. The nature of the immunological dyscrasias for these differing etiologies and their time course remain unclear. In this study, thirty hospitalized patients with SARS-CoV-2 infection were compared with ten critically ill patients with bacterial sepsis over 21 days, as well as ten healthy control subjects. Blood was sampled between days 1 and 21 after admission for targeted plasma biomarker analysis, cellular phenotyping, and leukocyte functional analysis via enzyme-linked immunospot assay. We found that circulating inflammatory markers were significantly higher early after bacterial sepsis compared with SARS-CoV-2. Both cohorts exhibited profound immune suppression through 21 days (suppressed HLA-DR expression, reduced mononuclear cell IFN-gamma production), and expanded numbers of myeloid-derived suppressor cells (MDSCs). In addition, MDSC expansion and ex vivo production of IFN-gamma and TNF-alpha were resolving over time in bacterial sepsis, whereas in SARS-CoV-2, immunosuppression and inflammation were accelerating. Despite less severe initial physiologic derangement, SARS-CoV-2 patients had similar incidence of secondary infections (23% vs 30%) as bacterial sepsis patients. Finally, COVID patients who developed secondary bacterial infections exhibited profound immunosuppression evident by elevated sPD-L1 and depressed HLA-DR. Although both bacterial sepsis and SARS-CoV-2 are associated with inflammation and immune suppression, their immune dyscrasia temporal patterns and clinical outcomes are different. SARS-CoV-2 patients had less severe early inflammation and organ dysfunction but had persistent inflammation and immunosuppression and suffered worse clinical outcomes, especially when SARS-CoV-2 infection was followed by secondary bacterial infection.
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- 2021
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113. Prefrontal and frontostriatal structures mediate academic outcomes associated with ADHD symptoms
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Howard Chiu, Sila Genc, Charles B. Malpas, Emma Sciberras, Jan M. Nicholson, Daryl Efron, and Timothy J. Silk
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ADHD ,Academic achievement ,Working memory ,Frontostriatal ,Prefrontal ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Children with attention-deficit/hyperactivity disorder (ADHD) have poor academic functioning compared to typically developing children, with executive dysfunction mediating the relationship between ADHD symptoms and academic outcomes. This study investigated whether differences in prefrontal and frontostriatal structures explain this mediating relationship. 132 children aged 9–11 years (mean 10.4 years) completed a MRI including structural and diffusion acquisitions. Cortical regions were parcellated using Freesurfer. Frontostriatal tracts were generated using constrained spherical deconvolution (CSD) tractography. Executive functioning was assessed using working memory, sustained attention and response inhibition tasks. Academic achievement was measured by direct assessment of reading and mathematics, teacher report of academic competence, and national standardized academic testing. Serial mediation analysis tested whether executive function and frontostriatal structures mediate the poorer academic functioning seen in ADHD. Symptom severity (predominantly inattention) was associated with poorer academic outcomes. Working memory partially mediated the relationship between symptoms and academic outcomes. In a serial mediation model, left DLPFC volume, right orbitofrontal volume, and left striatal structures to DLPFC tract volumes partially mediated academic outcome. This study suggests that variability in frontostriatal structures explain the mediating effect of cognitive performance on the relationship between ADHD symptomatology and academic outcomes.
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- 2021
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114. Experiencias comunitarias de conservación y defensa del patrimonio cultural: El District Six Museum, Ciudad del Cabo, Sudáfrica
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Laura Efron and Marisa Pineau
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Latin America. Spanish America ,F1201-3799 ,Social Sciences - Abstract
Entre 1948 y 1994, los gobiernos del apartheid en Sudáfrica desplazaron de forma forzada a miles de personas no blancas que vivían en ciertas zonas urbanas e impusieron la residencia exclusiva de la minoría blanca. En 1966, más de 60.000 personas que vivían en el Distrito Seis de Ciudad de Cabo sufrieron los desplazamientos forzados impuestos por el Estado. La Fundación del Museo del Distrito Seis surgió en 1989 como un proyecto comunitario que trabaja en pos de la revalorización de las historias silenciadas por el apartheid. El proyecto se propuso disputar los derechos a la propiedad de la tierra y buscar medidas de compensación por la desposesión y el trauma vivido durante el apartheid. En este trabajo nos proponemos describir las distintas facetas del proyecto del museo que promueven no solo la protección del Patrimonio Cultural del Distrito Seis sino también la restitución de tierras a las familias que fueron forzosamente desplazadas. Así, buscamos revalorizar una experiencia de producción colectiva de la memoria cuyo impacto en la actualidad local es sustancial en pos del desarrollo de políticas públicas reparativas.
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- 2021
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115. Clinical decision support recommending ventilator settings during noninvasive ventilation
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Tams, Carl, Stephan, Paul, Euliano, Neil, Gabrielli, Andrea, Martin, A. Daniel, Efron, Philip, and Patel, Rohit
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- 2020
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116. Minimally Invasive Proctectomy for Rectal Cancer: A National Perspective on Short-term Outcomes and Morbidity
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Taylor, James P., Stem, Miloslawa, Althumairi, Azah A., Gearhart, Susan L., Safar, Bashar, Fang, Sandy H., and Efron, Jonathan E.
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- 2020
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117. The Impact of Imatinib on Survival and Treatment Trends for Small Bowel and Colorectal Gastrointestinal Stromal Tumors
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Almaazmi, Hamda, Stem, Miloslawa, Lo, Brian D., Taylor, James P., Fang, Sandy H., Safar, Bashar, Efron, Jonathan E., and Atallah, Chady
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- 2020
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118. TRIF-Dependent Innate Immune Activation Is Critical for Survival to Neonatal Gram-Negative Sepsis
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Cuenca, Alex G, Joiner, Dallas N, Gentile, Lori F, Cuenca, Angela L, Wynn, James L, Kelly-Scumpia, Kindra M, Scumpia, Philip O, Behrns, Kevin E, Efron, Philip A, Nacionales, Dina, Lui, Chao, Wallet, Shannon M, Reeves, Westley H, Mathews, Clayton E, and Moldawer, Lyle L
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Hematology ,Pediatric ,Vaccine Related ,Infectious Diseases ,Sepsis ,Prevention ,Biodefense ,2.1 Biological and endogenous factors ,Aetiology ,Inflammatory and immune system ,Infection ,Adaptor Proteins ,Vesicular Transport ,Animals ,Animals ,Newborn ,Chemokine CXCL10 ,Chemokines ,Cytokines ,Disease Models ,Animal ,Disease Susceptibility ,Escherichia coli ,Female ,Genetic Predisposition to Disease ,Gram-Negative Bacterial Infections ,Granulocytes ,Immunity ,Innate ,Interferon Type I ,Macrophages ,Peritoneal ,Male ,Mice ,Mice ,Knockout ,Neutrophils ,Phagocytosis ,Reactive Oxygen Species ,Toll-Like Receptors ,Immunology - Abstract
Current evidence suggests that neonatal immunity is functionally distinct from adults. Although TLR signaling through the adaptor protein, MyD88, has been shown to be critical for survival to sepsis in adults, little is known about the role of MyD88 or TRIF in neonatal sepsis. We demonstrate that TRIF(-/-) but not MyD88(-/-) neonates are highly susceptible to Escherichia coli peritonitis and bacteremia. This was associated with decreased innate immune recruitment and function. Importantly, we found that the reverse was true in adults that MyD88(-/-) but not TRIF(-/-) or wild-type adults are susceptible to E. coli peritonitis and bacteremia. In addition, we demonstrate that TRIF but not MyD88 signaling is critical for the TLR4 protective adjuvant effect we have previously demonstrated. These data suggest a differential requirement for the survival of neonates versus adults to Gram-negative infection, and that modulation of TRIF in neonates can be used to augment survival to neonatal sepsis.
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- 2015
119. Optimizing perioperative Crohn's disease management: Role of coordinated medical and surgical care
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Bennett, Jennifer L, Ha, Christina Y, Efron, Jonathan E, Gearhart, Susan L, Lazarev, Mark G, and Wick, Elizabeth C
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Inflammatory Bowel Disease ,Cancer ,Aging ,Patient Safety ,Digestive Diseases ,Crohn's Disease ,Clinical Research ,8.1 Organisation and delivery of services ,Health and social care services research ,7.3 Management and decision making ,Management of diseases and conditions ,Oral and gastrointestinal ,Adult ,Baltimore ,Colonoscopy ,Combined Modality Therapy ,Crohn Disease ,Delivery of Health Care ,Integrated ,Female ,Gastrointestinal Agents ,Guideline Adherence ,Humans ,Laparoscopy ,Male ,Middle Aged ,Patient Care Team ,Patient Handoff ,Perioperative Care ,Practice Guidelines as Topic ,Practice Patterns ,Physicians' ,Predictive Value of Tests ,Quality Indicators ,Health Care ,Recurrence ,Remission Induction ,Retrospective Studies ,Risk Factors ,Tertiary Care Centers ,Time Factors ,Treatment Outcome ,Young Adult ,Coordinated care ,Crohn's disease ,Post-operative prophylaxis ,Multidisciplinary clinics ,Surgery ,Crohn’s disease ,Clinical Sciences ,Gastroenterology & Hepatology - Abstract
AimTo investigate rates of re-establishing gastroenterology care, colonoscopy, and/or initiating medical therapy after Crohn's disease (CD) surgery at a tertiary care referral center.MethodsCD patients having small bowel or ileocolonic resections with a primary anastomosis between 2009-2012 were identified from a tertiary academic referral center. CD-specific features, medications, and surgical outcomes were abstracted from the medical record. The primary outcome measure was compliance rates with medical follow-up within 4 wk of hospital discharge and surveillance colonoscopy within 12 mo of surgery.ResultsEighty-eight patients met study inclusion criteria with 92% (n=81) of patients returning for surgical follow-up compared to only 41% (n=36) of patients with documented gastroenterology follow-up within four-weeks of hospital discharge, P
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- 2015
120. Primary mucocutaneous histoplasmosis in an immunocompetent patient
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Kash, Natalie, Jahan-Tigh, Richard Reza, Efron-Everett, Melissa, and Vigneswaran, Nadarajah
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Histoplasmosis ,Histoplasma capsulatum ,Primary Mucocutaneous ,Immunocompetent ,Itraconazole ,Cirrhosis - Abstract
We report a case of primary mucocutaneous histoplasmosis in an immunocompetent individual. The patient, a 61-year-old woman, presented with a non-healing ulcer on the lateral border of her tongue. Excisional biopsy of the lesion was consistent with histoplasmosis and no evidence of pulmonary or disseminated infection was found. Although mucocutaneous infection has been well-described as a manifestation of disseminated disease, especially in immunocompromised individuals, oral infections in immunocompetent patients are rare.
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- 2015
121. Confidence Intervals for Random Forests: The Jackknife and the Infinitesimal Jackknife
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Wager, Stefan, Hastie, Trevor, and Efron, Bradley
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Statistics - Machine Learning ,Statistics - Computation ,Statistics - Methodology - Abstract
We study the variability of predictions made by bagged learners and random forests, and show how to estimate standard errors for these methods. Our work builds on variance estimates for bagging proposed by Efron (1992, 2012) that are based on the jackknife and the infinitesimal jackknife (IJ). In practice, bagged predictors are computed using a finite number B of bootstrap replicates, and working with a large B can be computationally expensive. Direct applications of jackknife and IJ estimators to bagging require B on the order of n^{1.5} bootstrap replicates to converge, where n is the size of the training set. We propose improved versions that only require B on the order of n replicates. Moreover, we show that the IJ estimator requires 1.7 times less bootstrap replicates than the jackknife to achieve a given accuracy. Finally, we study the sampling distributions of the jackknife and IJ variance estimates themselves. We illustrate our findings with multiple experiments and simulation studies., Comment: To appear in Journal of Machine Learning Research (JMLR)
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- 2013
122. Age and Sex Influence the Hippocampal Response and Recovery Following Sepsis
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Barter, Jolie, Kumar, Ashok, Stortz, Julie A., Hollen, McKenzie, Nacionales, Dina, Efron, Philip A., Moldawer, Lyle L., and Foster, Thomas C.
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- 2019
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123. Bayesian inference and the parametric bootstrap
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Efron, Bradley
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Statistics - Applications - Abstract
The parametric bootstrap can be used for the efficient computation of Bayes posterior distributions. Importance sampling formulas take on an easy form relating to the deviance in exponential families and are particularly simple starting from Jeffreys invariant prior. Because of the i.i.d. nature of bootstrap sampling, familiar formulas describe the computational accuracy of the Bayes estimates. Besides computational methods, the theory provides a connection between Bayesian and frequentist analysis. Efficient algorithms for the frequentist accuracy of Bayesian inferences are developed and demonstrated in a model selection example., Comment: Published in at http://dx.doi.org/10.1214/12-AOAS571 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2013
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124. A Transcriptomic Severity Metric That Predicts Clinical Outcomes in Critically Ill Surgical Sepsis Patients
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Scott C. Brakenridge, MD, Petr Starostik, MD, Gabriella Ghita, PhD, Uros Midic, PhD, Dijoia Darden, MD, Brittany Fenner, MD, James Wacker, MS, Philip A. Efron, MD, Oliver Liesenfeld, MD, Timothy E. Sweeney, MD, PhD, and Lyle L. Moldawer, PhD
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Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
OBJECTIVES:. Clinically deployable methods for the rapid and accurate prediction of sepsis severity that could elicit a meaningful change in clinical practice are currently lacking. We evaluated a whole-blood, multiplex host-messenger RNA expression metric, Inflammatix-Severity-2, for identifying septic, hospitalized patients’ likelihood of 30-day mortality, development of chronic critical illness, discharge disposition, and/or secondary infections. DESIGN:. Retrospective, validation cohort analysis. SETTING:. Single, academic health center ICU. PATIENTS:. Three hundred thirty-five critically ill adult surgical patients with sepsis. INTERVENTIONS:. None. MEASUREMENTS AND MAIN RESULTS:. Whole blood was collected in PAXgene Blood RNA collection tubes at 24 hours after sepsis diagnosis and analyzed using a custom 29-messenger RNA classifier (Inflammatix-Severity-2) in a Clinical Laboratory Improvement Amendments certified diagnostic laboratory using the NanoString FLEX platform. Among patients meeting Sepsis-3 criteria, the Inflammatix-Severity-2 severity score was significantly better (p < 0.05) at predicting secondary infections (area under the receiver operating curve 0.71) and adverse clinical outcomes (area under the receiver operating curve 0.75) than C-reactive protein, absolute lymphocyte counts, total WBC count, age, and Charlson comorbidity index (and better, albeit nonsignificantly, than interleukin-6 and Acute Physiology and Chronic Health Evaluation II). Using multivariate logistic regression analysis, only combining the Charlson comorbidity index (area under the receiver operating curve 0.80) or Acute Physiology and Chronic Health Evaluation II (area under the receiver operating curve 0.81) with Inflammatix-Severity-2 significantly improved prediction of adverse clinical outcomes, and combining with the Charlson comorbidity index for predicting 30-day mortality (area under the receiver operating curve 0.79). CONCLUSIONS:. The Inflammatix-Severity-2 severity score was superior at predicting secondary infections and overall adverse clinical outcomes compared with other common metrics. Combining a rapidly measured transcriptomic metric with clinical or physiologic indices offers the potential to optimize risk-based resource utilization and patient management adjustments that may improve outcomes in surgical sepsis. Hospitalized patients who are septic and present with an elevated IMX-SEV2 severity score and preexisting comorbidities may be ideal candidates for clinical interventions aimed at reducing the risk of secondary infections and adverse clinical outcomes.
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- 2021
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125. Machine Learning Applications in Solid Organ Transplantation and Related Complications
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Jeremy A. Balch, Daniel Delitto, Patrick J. Tighe, Ali Zarrinpar, Philip A. Efron, Parisa Rashidi, Gilbert R. Upchurch, Azra Bihorac, and Tyler J. Loftus
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machine learning ,transplantation ,artificial intelligence ,organ allocation ,critical care ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The complexity of transplant medicine pushes the boundaries of innate, human reasoning. From networks of immune modulators to dynamic pharmacokinetics to variable postoperative graft survival to equitable allocation of scarce organs, machine learning promises to inform clinical decision making by deciphering prodigious amounts of available data. This paper reviews current research describing how algorithms have the potential to augment clinical practice in solid organ transplantation. We provide a general introduction to different machine learning techniques, describing their strengths, limitations, and barriers to clinical implementation. We summarize emerging evidence that recent advances that allow machine learning algorithms to predict acute post-surgical and long-term outcomes, classify biopsy and radiographic data, augment pharmacologic decision making, and accurately represent the complexity of host immune response. Yet, many of these applications exist in pre-clinical form only, supported primarily by evidence of single-center, retrospective studies. Prospective investigation of these technologies has the potential to unlock the potential of machine learning to augment solid organ transplantation clinical care and health care delivery systems.
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- 2021
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126. Persistent Inflammation, Immunosuppression and Catabolism after Severe Injury or Infection
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Efron, P. A., Moore, F. A., Brakenridge, S. C., and Vincent, Jean-Louis, editor
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- 2018
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127. Cultural Considerations of Mentoring Teachers in Diverse School Settings
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Efron, Sara Efrat, Winter, Jeffrey S., and Bressman, Sherri
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Growing evidence indicates that trusting relationships between mentors and teachers is crucial for effective mentoring. In diverse communities, where the mentor's culture is distinctly different from that of the teachers, it is more difficult to form a trusting relationship because of different cultural norms, values, and beliefs (Johnson-Baily & Cerveno, 2002). The challenges of this cross-cultural mentoring are a fertile ground for mutual growth. This study focuses on the cultural considerations of mentoring teachers in diverse school settings. We examine the influence of differences in culture, religion and heritage on mentoring relationships. We examine the influence of differences in culture, religion and heritage on mentoring relationships within the context of a mentoring program in Orthodox Jewish day schools.
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- 2018
128. The Linguistic Provenance of the Hebrew King Arthur (1279) Reassessed
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Jacobowitz-Efron, Leon
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Based on its inclusion of non-Hebrew Italian loanwords and the sole surviving manuscript copy being Italian, the current consensus among scholars is that an Italian Jew authoredMelekh Artus(1279), the only extant medieval Hebrew translation of Arthurian material. The following study destabilizes this consensus opinion demonstrating why these loanwords are a precarious tool when ascertaining this text’s linguistic provenance. Not only are most of the said loanwords not necessarily Italian, but, using Italian copies of the French biblical commentator Rashi, this study establishes that Jewish Italian scribes sometimes Italianized Old French loanwords they encountered in their Hebrew sources. Thus, the few loanwords that are Italianisms do not prove Italian authorship but merely that the sole surviving copy was produced by an Italian-Jewish scribe adhering to the scribal conventions of his times.
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- 2024
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129. The effects of puberty and its hormones on subcortical brain development
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Nandita Vijayakumar, George Youssef, Nicholas B. Allen, Vicki Anderson, Daryl Efron, Lisa Mundy, George Patton, Julian G. Simmons, Tim Silk, and Sarah Whittle
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Puberty ,Hormones ,Brain development ,Structural MRI ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Psychology ,BF1-990 - Abstract
Puberty triggers a period of structural “re-organization” in the brain, when rising hormone levels act via receptors to influence morphology. However, our understanding of these neuroendocrine processes in humans remains poor. As such, the current longitudinal study characterized development of the human subcortex during puberty, including changes in relation to pubertal (Tanner) stage and hormone (testosterone, dehydroepiandrosterone [DHEA]) levels. Beyond normative group-level patterns of development, we also examined whether individual differences in the rate of pubertal maturation (i.e., “pubertal/hormonal tempo”) were associated with variations in subcortical trajectories. Participants (N = 192; scans = 366) completed up to three waves of MRI assessments between 8.5 and 14.5 years of age. Parents completed questionnaire assessments of pubertal stage at each wave, and adolescents provided hormone samples on a subset of waves. Generalized additive mixture models were used to characterize trajectories of subcortical development. Results showed that development of most subcortical structures was related to pubertal stage, although findings were mostly non-significant when controlling for age. Testosterone and DHEA levels were related to development of the amygdala, hippocampus and pallidum in both sexes, and findings in the amygdala remained significant when controlling for age. Additionally, we found that variability in hormonal (specifically testosterone) tempo was related to right hippocampal development in males, with an accelerated pattern of hippocampal development in those with greater increases in testosterone levels. Overall, our findings suggest prominent hormonal influences on the amygdala and hippocampus, consistent with the prevalence of androgen and estrogen receptors in these regions. We speculate that these findings are most likely reflective of the important role of adrenarcheal processes on adolescent brain development.
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- 2021
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130. A Novel Single Cell RNA-seq Analysis of Non-Myeloid Circulating Cells in Late Sepsis
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Dijoia B. Darden, Xiaoru Dong, Maigan A. Brusko, Lauren Kelly, Brittany Fenner, Jaimar C. Rincon, Marvin L. Dirain, Ricardo Ungaro, Dina C. Nacionales, Marie Gauthier, Michael Kladde, Todd M. Brusko, Azra Bihorac, Frederick A. Moore, Tyler Loftus, Rhonda Bacher, Lyle L. Moldawer, Alicia M. Mohr, and Philip A. Efron
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lymphocytes ,immune cells ,sepsis ,transcriptome ,scRNA-seq ,chronic critical illness ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundWith the successful implementation of the Surviving Sepsis Campaign guidelines, post-sepsis in-hospital mortality to sepsis continues to decrease. Those who acutely survive surgical sepsis will either rapidly recover or develop a chronic critical illness (CCI). CCI is associated with adverse long-term outcomes and 1-year mortality. Although the pathobiology of CCI remains undefined, emerging evidence suggests a post-sepsis state of pathologic myeloid activation, inducing suboptimal lymphopoiesis and erythropoiesis, as well as downstream leukocyte dysfunction. Our goal was to use single-cell RNA sequencing (scRNA-seq) to perform a detailed transcriptomic analysis of lymphoid-derived leukocytes to better understand the pathology of late sepsis.MethodsA mixture of whole blood myeloid-enriched and Ficoll-enriched peripheral blood mononuclear cells from four late septic patients (post-sepsis day 14-21) and five healthy subjects underwent Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq).ResultsWe identified unique transcriptomic patterns for multiple circulating immune cell subtypes, including B- and CD4+, CD8+, activated CD4+ and activated CD8+ T-lymphocytes, as well as natural killer (NK), NKT, and plasmacytoid dendritic cells in late sepsis patients. Analysis demonstrated that the circulating lymphoid cells maintained a transcriptome reflecting immunosuppression and low-grade inflammation. We also identified transcriptomic differences between patients with bacterial versus fungal sepsis, such as greater expression of cytotoxic genes among CD8+ T-lymphocytes in late bacterial sepsis.ConclusionCirculating non-myeloid cells display a unique transcriptomic pattern late after sepsis. Non-myeloid leukocytes in particular reveal a host endotype of inflammation, immunosuppression, and dysfunction, suggesting a role for precision medicine-guided immunomodulatory therapy.
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- 2021
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131. The impact of hindlimb disuse on sepsis‐induced myopathy in mice
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Orlando Laitano, Jose Pindado, Isela Valera, Ray A. Spradlin, Kevin O. Murray, Katelyn R. Villani, Jamal M. Alzahrani, Terence E. Ryan, Philip A. Efron, Leonardo F. Ferreira, Elisabeth R. Barton, and Thomas L. Clanton
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atrophy ,infection ,inflammation ,muscle ,septic shock ,weakness ,Physiology ,QP1-981 - Abstract
Abstract Sepsis induces a myopathy characterized by loss of muscle mass and weakness. Septic patients undergo prolonged periods of limb muscle disuse due to bed rest. The contribution of limb muscle disuse to the myopathy phenotype remains poorly described. To characterize sepsis‐induced myopathy with hindlimb disuse, we combined the classic sepsis model via cecal ligation and puncture (CLP) with the disuse model of hindlimb suspension (HLS) in mice. Male C57bl/6j mice underwent CLP or SHAM surgeries. Four days after surgeries, mice underwent HLS or normal ambulation (NA) for 7 days. Soleus (SOL) and extensor digitorum longus (EDL) were dissected for in vitro muscle mechanics, morphological, and histological assessments. In SOL muscles, both CLP+NA and SHAM+HLS conditions elicited ~20% reduction in specific force (p
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- 2021
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132. ASA President’s Task Force Statement on Statistical Significance and Replicability
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Yoav Benjamini, Richard De Veaux, Bradley Efron, Scott Evans, Mark Glickman, Barry I. Graubard, Xuming He, Xiao-Li Meng, Nancy Reid, Stephen M. Stigler, Stephen B. Vardeman, Christopher K. Wikle, Tommy Wright, Linda J. Young, and Karen Kafadar
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Electronic computers. Computer science ,QA75.5-76.95 - Published
- 2021
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133. Rejoinder: The Future of Indirect Evidence
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Efron, Bradley
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Statistics - Methodology - Abstract
Rejoinder to "The Future of Indirect Evidence" [arXiv:1012.1161], Comment: Published in at http://dx.doi.org/10.1214/10-STS308REJ the Statistical Science (http://www.imstat.org/sts/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2010
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134. The Future of Indirect Evidence
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Efron, Bradley
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Statistics - Methodology - Abstract
Familiar statistical tests and estimates are obtained by the direct observation of cases of interest: a clinical trial of a new drug, for instance, will compare the drug's effects on a relevant set of patients and controls. Sometimes, though, indirect evidence may be temptingly available, perhaps the results of previous trials on closely related drugs. Very roughly speaking, the difference between direct and indirect statistical evidence marks the boundary between frequentist and Bayesian thinking. Twentieth-century statistical practice focused heavily on direct evidence, on the grounds of superior objectivity. Now, however, new scientific devices such as microarrays routinely produce enormous data sets involving thousands of related situations, where indirect evidence seems too important to ignore. Empirical Bayes methodology offers an attractive direct/indirect compromise. There is already some evidence of a shift toward a less rigid standard of statistical objectivity that allows better use of indirect evidence. This article is basically the text of a recent talk featuring some examples from current practice, with a little bit of futuristic speculation., Comment: This paper commented in: [arXiv:1012.1414], [arXiv:1012.1423], [arXiv:1012.1479]. Rejoinder in [arXiv:1012.1489]. Published in at http://dx.doi.org/10.1214/09-STS308 the Statistical Science (http://www.imstat.org/sts/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2010
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135. Are a set of microarrays independent of each other?
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Efron, Bradley
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Statistics - Applications - Abstract
Having observed an $m\times n$ matrix $X$ whose rows are possibly correlated, we wish to test the hypothesis that the columns are independent of each other. Our motivation comes from microarray studies, where the rows of $X$ record expression levels for $m$ different genes, often highly correlated, while the columns represent $n$ individual microarrays, presumably obtained independently. The presumption of independence underlies all the familiar permutation, cross-validation and bootstrap methods for microarray analysis, so it is important to know when independence fails. We develop nonparametric and normal-theory testing methods. The row and column correlations of $X$ interact with each other in a way that complicates test procedures, essentially by reducing the accuracy of the relevant estimators., Comment: Published in at http://dx.doi.org/10.1214/09-AOAS236 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2009
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136. Exosomal microRNA following severe trauma: Role in bone marrow dysfunction.
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Munley, Jennifer A., Willis, Micah L., Gillies, Gwendolyn S., Kannan, Kolenkode B., Polcz, Valerie E., Balch, Jeremy A., Barrios, Evan L., Wallet, Shannon M., Bible, Letitia E., Efron, Philip A., Maile, Robert, and Mohr, Alicia M.
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- 2024
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137. Does the treatment of anxiety in children with Attention-Deficit/Hyperactivity Disorder (ADHD) using cognitive behavioral therapy improve child and family outcomes? Protocol for a randomized controlled trial
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Emma Sciberras, Daryl Efron, Pooja Patel, Melissa Mulraney, Katherine J. Lee, Cathy Mihalopoulos, Lidia Engel, Ronald M. Rapee, Vicki Anderson, Jan M. Nicholson, Rachel Schembri, and Harriet Hiscock
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ADHD ,Anxiety ,Child ,Randomized controlled trial ,Efficacy ,Treatment ,Psychiatry ,RC435-571 - Abstract
Abstract Background Up to 60% of children with Attention-Deficit/Hyperactivity Disorder (ADHD) meet diagnostic criteria for at least one anxiety disorder, including Social, Generalized and/or Separation Disorder. Anxiety in children with ADHD has been shown to be associated with poorer child and family functioning. Small pilot studies suggest that treating anxiety in children with ADHD using cognitive-behavioral therapy (CBT) has promising benefits. In a fully powered randomized controlled trial (RCT), we aim to investigate the efficacy of an existing CBT intervention adapted for children with ADHD and comorbid anxiety compared with usual care. Methods This RCT is recruiting children aged 8–12 years (N = 228) from pediatrician practices in Victoria, Australia. Eligibility criteria include meeting full diagnostic criteria for ADHD and at least one anxiety disorder (Generalized, Separation or Social). Eligible children are randomized to receive a 10 session CBT intervention (Cool Kids) versus usual clinical care from their pediatrician. The intervention focuses on building child and parent skills and strategies to manage anxiety and associated impairments including cognitive restructuring and graded exposure. Minor adaptations have been made to the delivery of the intervention to meet the needs of children with ADHD including increased use of visual materials and breaks between activities. The primary outcome is change in the proportion of children meeting diagnostic criteria for an anxiety disorder at 5 months randomization. This will be assessed via diagnostic interview with the child’s parent (Anxiety Disorders Interview Schedule for Children V) conducted by a researcher blinded to intervention condition. Secondary outcomes include a range of child (e.g., anxiety symptoms, ADHD severity, behavior, quality of life, sleep, cognitive functioning, school attendance) and parent (e.g., mental health, parenting behaviors, work attendance) domains of functioning assessed at 5 and 12 months post-randomization. Outcomes will be analyzed using logistic and mixed effects regression. Discussion The results from this study will provide evidence on whether treating comorbid anxiety in children with ADHD using a CBT approach leads to improvements in anxiety and/or broader functional outcomes. Trial registration This trial was prospectively registered: Current Controlled Trials ISRCTN59518816 (https://doi.org/10.1186/ISRCTN59518816). The trial was first registered 29/9/15 and last updated 15/1/19.
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- 2019
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138. Myeloid-derived suppressor cell function and epigenetic expression evolves over time after surgical sepsis
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McKenzie K. Hollen, Julie A. Stortz, Dijoia Darden, Marvin L. Dirain, Dina C. Nacionales, Russell B. Hawkins, Michael C. Cox, Maria-Cecilia Lopez, Jaimar C. Rincon, Ricardo Ungaro, Zhongkai Wang, Quran Wu, Babette Brumback, Marie-Pierre L. Gauthier, Michael Kladde, Christiaan Leeuwenburgh, Mark Segal, Azra Bihorac, Scott Brakenridge, Frederick A. Moore, Henry V. Baker, Alicia M. Mohr, Lyle L. Moldawer, and Philip A. Efron
- Subjects
Myeloid-derived suppressor cells ,Sepsis ,Surgery ,Human ,Epigenetics ,miRNA ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Background Sepsis is an increasingly significant challenge throughout the world as one of the major causes of patient morbidity and mortality. Central to the host immunologic response to sepsis is the increase in circulating myeloid-derived suppressor cells (MDSCs), which have been demonstrated to be present and independently associated with poor long-term clinical outcomes. MDSCs are plastic cells and potentially modifiable, particularly through epigenetic interventions. The objective of this study was to determine how the suppressive phenotype of MDSCs evolves after sepsis in surgical ICU patients, as well as to identify epigenetic differences in MDSCs that may explain these changes. Methods Circulating MDSCs from 267 survivors of surgical sepsis were phenotyped at various intervals over 6 weeks, and highly enriched MDSCs from 23 of these samples were co-cultured with CD3/CD28-stimulated autologous T cells. microRNA expression from enriched MDSCs was also identified. Results We observed that MDSC numbers remain significantly elevated in hospitalized sepsis survivors for at least 6 weeks after their infection. However, only MDSCs obtained at and beyond 14 days post-sepsis significantly suppressed T lymphocyte proliferation and IL-2 production. These same MDSCs displayed unique epigenetic (miRNA) expression patterns compared to earlier time points. Conclusions We conclude that in sepsis survivors, immature myeloid cell numbers are increased but the immune suppressive function specific to MDSCs develops over time, and this is associated with a specific epigenome. These findings may explain the chronic and persistent immune suppression seen in these subjects.
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- 2019
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139. Sequential short-course radiation therapy and chemotherapy in the neoadjuvant treatment of rectal adenocarcinoma
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Angela Y. Jia, Amol Narang, Bashar Safar, Atif Zaheer, Adrian Murphy, Nilofer S. Azad, Susan Gearhart, Sandy Fang, Jonathan Efron, Tam Warczynski, Amy Hacker-Prietz, and Jeffrey Meyer
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Rectal cancer ,Short-course chemoradiotherapy ,Watch and wait ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background There is continued debate regarding the optimal combinations of radiation therapy and chemotherapy in the preoperative treatment of locally advanced rectal adenocarcinomas. We report our single-institution experience of feasibility and early oncologic outcomes of short-course preoperative radiation therapy (5 Gy X 5 fractions) followed by consolidation neoadjuvant chemotherapy. Methods We reviewed the records of 26 patients with locally advanced rectal adenocarcinoma. All patients underwent short course radiotherapy (5 Gy X 5 fractions) followed by chemotherapy [either modified infusional and bolus 5-fluorouracail and oxalipatin (mFOLFOX6) or capecitabine and oxaliplatin] prior to consideration for surgery. A full course of chemotherapy was defined as at least 8 weeks of chemotherapy. Results There were five clinical (c) T2, 16 cT3, and five cT4 rectal tumors, with 88% cN+. Twenty-five patients received a median of 4 cycles (range 3 to 8) of mFOLFOX6 (with one cycle defined as a two-week period); one patient received 3 cycles of capecitabine and oxaliplatin. All patients completed SCRT; 81% completed the full course of neoadjuvant chemotherapy with 19% requiring dose reductions in chemotherapy, most commonly due to neuropathy. Nineteen patients underwent post-treatment endoscopic evaluation, and nine patients were noted to achieve a complete clinical response (CCR). Six of the nine patients who achieved CCR opted for a non-operative approach of watch-and-wait. Twenty patients underwent surgical resection; pathologic complete response was observed in seven (35%) of these twenty. The main radiation-associated toxicity was proctitis with CTCAE Grade 2 proctitis observed in seven patients (27%). Post-operative Clavien-Dindo Grade 3 complications within 30 days of surgery were identified in six patients (30%), with no Grade 4 or 5 adverse events. Median length of hospital stay was 4.5 days (range 2–16 days); three patients were readmitted within a 30 day period. Conclusions Short course preoperative radiotherapy followed by neoadjuvant chemotherapy was well-tolerated and achieved oncologic outcomes that compare favorably with short-course radiation therapy alone or long-course chemoradiotherapy. This regimen is associated with high rates of clinical and pathologic complete response.
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- 2019
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140. Rejoinder: Microarrays, Empirical Bayes and the Two-Groups Model
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Efron, Bradley
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Statistics - Methodology - Abstract
Rejoinder to ``Microarrays, Empirical Bayes and the Two-Groups Model'' [arXiv:0808.0572], Comment: Published in at http://dx.doi.org/10.1214/08-STS236REJ the Statistical Science (http://www.imstat.org/sts/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2008
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141. Microarrays, Empirical Bayes and the Two-Groups Model
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Efron, Bradley
- Subjects
Statistics - Methodology - Abstract
The classic frequentist theory of hypothesis testing developed by Neyman, Pearson and Fisher has a claim to being the twentieth century's most influential piece of applied mathematics. Something new is happening in the twenty-first century: high-throughput devices, such as microarrays, routinely require simultaneous hypothesis tests for thousands of individual cases, not at all what the classical theory had in mind. In these situations empirical Bayes information begins to force itself upon frequentists and Bayesians alike. The two-groups model is a simple Bayesian construction that facilitates empirical Bayes analysis. This article concerns the interplay of Bayesian and frequentist ideas in the two-groups setting, with particular attention focused on Benjamini and Hochberg's False Discovery Rate method. Topics include the choice and meaning of the null hypothesis in large-scale testing situations, power considerations, the limitations of permutation methods, significance testing for groups of cases (such as pathways in microarray studies), correlation effects, multiple confidence intervals and Bayesian competitors to the two-groups model., Comment: This paper commented in: [arXiv:0808.0582], [arXiv:0808.0593], [arXiv:0808.0597], [arXiv:0808.0599]. Rejoinder in [arXiv:0808.0603]. Published in at http://dx.doi.org/10.1214/07-STS236 the Statistical Science (http://www.imstat.org/sts/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2008
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142. Prognostic value of NT-proBNP levels in the acute phase of sepsis on lower long-term physical function and muscle strength in sepsis survivors
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Carlo Custodero, Quran Wu, Gabriela L. Ghita, Stephen D. Anton, Scott C. Brakenridge, Babette A. Brumback, Philip A. Efron, Anna K. Gardner, Christiaan Leeuwenburgh, Lyle L. Moldawer, John W. Petersen, Frederick A. Moore, and Robert T. Mankowski
- Subjects
Sepsis ,Prognostic value ,N-terminal pro-brain natriuretic peptide ,Short physical performance battery ,Hand grip strength ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Background Sepsis survivors often develop chronic critical illness (CCI) and demonstrate the persistent inflammation, immunosuppression, and catabolism syndrome predisposing them to long-term functional limitations and higher mortality. There is a need to identify biomarkers that can predict long-term worsening of physical function to be able to act early and prevent mobility loss. N-terminal pro-brain natriuretic peptide (NT-proBNP) is a well-accepted biomarker of cardiac overload, but it has also been shown to be associated with long-term physical function decline. We explored whether NT-proBNP blood levels in the acute phase of sepsis are associated with physical function and muscle strength impairment at 6 and 12 months after sepsis onset. Methods This is a retrospective analysis conducted in 196 sepsis patients (aged 18–86 years old) as part of the University of Florida (UF) Sepsis and Critical Illness Research Center (SCIRC) who consented to participate in the 12-month follow-up study. NT-proBNP was measured at 24 h after sepsis onset. Patients were followed to determine physical function by short physical performance battery (SPPB) test score (scale 0 to12—higher score corresponds with better physical function) and upper limb muscle strength by hand grip strength test (kilograms) at 6 and 12 months. We used a multivariate linear regression model to test an association between NT-proBNP levels, SPPB, and hand grip strength scores. Missing follow-up data or absence due to death was accounted for by using inverse probability weighting based on concurrent health performance status scores. Statistical significance was set at p ≤ 0.05. Results After adjusting for covariates (age, gender, race, Charlson comorbidity index, APACHE II score, and presence of CCI condition), higher levels of NT-proBNP at 24 h after sepsis onset were associated with lower SPPB scores at 12 months (p
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- 2019
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143. Simultaneous inference: When should hypothesis testing problems be combined?
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Efron, Bradley
- Subjects
Statistics - Applications - Abstract
Modern statisticians are often presented with hundreds or thousands of hypothesis testing problems to evaluate at the same time, generated from new scientific technologies such as microarrays, medical and satellite imaging devices, or flow cytometry counters. The relevant statistical literature tends to begin with the tacit assumption that a single combined analysis, for instance, a False Discovery Rate assessment, should be applied to the entire set of problems at hand. This can be a dangerous assumption, as the examples in the paper show, leading to overly conservative or overly liberal conclusions within any particular subclass of the cases. A simple Bayesian theory yields a succinct description of the effects of separation or combination on false discovery rate analyses. The theory allows efficient testing within small subclasses, and has applications to ``enrichment,'' the detection of multi-case effects., Comment: Published in at http://dx.doi.org/10.1214/07-AOAS141 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2008
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144. Discussion: The Dantzig selector: Statistical estimation when $p$ is much larger than $n$
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Efron, Bradley, Hastie, Trevor, and Tibshirani, Robert
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Mathematics - Statistics Theory - Abstract
Discussion of ``The Dantzig selector: Statistical estimation when $p$ is much larger than $n$'' [math/0506081], Comment: Published in at http://dx.doi.org/10.1214/009053607000000433 the Annals of Statistics (http://www.imstat.org/aos/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2008
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145. The Impact of Circadian Misalignment on Athletic Performance in Professional Football Players
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Smith, Roger S, Efron, Bradley, Mah, Cheri D, and Malhotra, Atul
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Sleep Research ,Clinical Research ,Athletes ,Athletic Performance ,Circadian Rhythm ,Football ,Humans ,Retrospective Studies ,Time Factors ,United States ,Circadian rhythm ,athlete ,performance ,football ,sleep ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Neurology & Neurosurgery - Abstract
ObjectiveWe hypothesized that professional football teams would perform better than anticipated during games occurring close to their circadian peak in performance.DesignWe reviewed the past 40 years of evening and daytime professional football games between west coast and east coast United States teams. In order to account for known factors influencing football game outcomes we compared the results to the point spread which addresses all significant differences between opposing teams for sports betting purposes. One sample t-tests, Wilcoxon signed ranked tests, and linear regression were performed. Comparison to day game data was included as a control.SettingAcademic medical center.ParticipantsN/A.InterventionsN/A.ResultsThe results were strongly in favor of the west coast teams during evening games against east coast teams, with the west coast teams beating the point spread about twice as often (t = 3.95, P < 0.0001) as east coast teams. For similar daytime game match-ups, we observed no such advantage.ConclusionsSleep and circadian physiology have profound effects on human function including the performance of elite athletes. Professional football players playing close to the circadian peak in performance demonstrate a significant athletic advantage over those who are playing at other times. Application of this knowledge is likely to enhance human performance.
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- 2013
146. Size, power and false discovery rates
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Efron, Bradley
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Mathematics - Statistics Theory ,62J07, 62G07 (Primary) - Abstract
Modern scientific technology has provided a new class of large-scale simultaneous inference problems, with thousands of hypothesis tests to consider at the same time. Microarrays epitomize this type of technology, but similar situations arise in proteomics, spectroscopy, imaging, and social science surveys. This paper uses false discovery rate methods to carry out both size and power calculations on large-scale problems. A simple empirical Bayes approach allows the false discovery rate (fdr) analysis to proceed with a minimum of frequentist or Bayesian modeling assumptions. Closed-form accuracy formulas are derived for estimated false discovery rates, and used to compare different methodologies: local or tail-area fdr's, theoretical, permutation, or empirical null hypothesis estimates. Two microarray data sets as well as simulations are used to evaluate the methodology, the power diagnostics showing why nonnull cases might easily fail to appear on a list of ``significant'' discoveries., Comment: Published in at http://dx.doi.org/10.1214/009053606000001460 the Annals of Statistics (http://www.imstat.org/aos/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2007
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147. A longitudinal analysis of puberty‐related cortical development
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Nandita Vijayakumar, George J. Youssef, Nicholas B Allen, Vicki Anderson, Daryl Efron, Philip Hazell, Lisa Mundy, Jan M Nicholson, George Patton, Marc L Seal, Julian G Simmons, Sarah Whittle, and Tim Silk
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Pubertal stage ,Pubertal tempo ,Cortical thickness ,Structural MRI ,Longitudinal analyses ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The brain undergoes extensive structural changes during adolescence, concurrent to puberty-related physical and hormonal changes. While animal research suggests these biological processes are related to one another, our knowledge of brain development in humans is largely based on age-related processes. Thus, the current study characterized puberty-related changes in human brain structure, by combining data from two longitudinal neuroimaging cohorts. Beyond normative changes in cortical thickness, we examined whether individual differences in the rate of pubertal maturation (or “pubertal tempo”) was associated with variations in cortical trajectories. Participants (N = 192; scans = 366) completed up to three waves of MRI assessments between 8.5 and 14.5 years of age, as well as questionnaire assessments of pubertal stage at each wave. Generalized additive mixture models were used to characterize trajectories of cortical development. Results revealed widespread linear puberty-related changes across much of the cortex. Many of these changes, particularly within the frontal and parietal cortices, were independent of age-related development. Males exhibiting faster pubertal tempo demonstrated greater thinning in the precuneus and frontal cortices than same-aged and -sex peers. Findings suggest that the unique influence of puberty on cortical development may be more extensive than previously identified, and also emphasize important individual differences in the coupling of these developmental processes.
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- 2021
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148. On testing the significance of sets of genes
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Efron, Bradley and Tibshirani, Robert
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Mathematics - Statistics Theory ,Quantitative Biology - Molecular Networks ,Statistics - Applications - Abstract
This paper discusses the problem of identifying differentially expressed groups of genes from a microarray experiment. The groups of genes are externally defined, for example, sets of gene pathways derived from biological databases. Our starting point is the interesting Gene Set Enrichment Analysis (GSEA) procedure of Subramanian et al. [Proc. Natl. Acad. Sci. USA 102 (2005) 15545--15550]. We study the problem in some generality and propose two potential improvements to GSEA: the maxmean statistic for summarizing gene-sets, and restandardization for more accurate inferences. We discuss a variety of examples and extensions, including the use of gene-set scores for class predictions. We also describe a new R language package GSA that implements our ideas., Comment: Published at http://dx.doi.org/10.1214/07-AOAS101 in the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org)
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- 2006
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149. Search for First-Generation Scalar Leptoquarks in $\bm{p \bar{p}}$ collisions at $\sqrt{s}$=1.96 TeV
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The CDF Collaboration, Acosta, D., Adelman, J., Affolder, T., Akimoto, T., Albrow, M. G., Ambrose, D., Amerio, S., Amidei, D., Anastassov, A., Anikeev, K., Annovi, A., Antos, J., Aoki, M., Apollinari, G., Arisawa, T., Arguin, J-F., Artikov, A., Ashmanskas, W., Attal, A., Azfar, F., Azzi-Bacchetta, P., Bacchetta, N., Bachacou, H., Badgett, W., Barbaro-Galtieri, A., Barker, G. J., Barnes, V. E., Barnett, B. A., Baroiant, S., Bauer, G., Bedeschi, F., Behari, S., Belforte, S., Bellettini, G., Bellinger, J., Belloni, A., Ben-Haim, E., Benjamin, D., Beretvas, A., Berry, T., Bhatti, A., Binkley, M., Bisello, D., Bishai, M., Blair, R. E., Blocker, C., Bloom, K., Blumenfeld, B., Bocci, A., Bodek, A., Bolla, G., Bolshov, A., Bortoletto, D., Boudreau, J., Bourov, S., Brau, B., Bromberg, C., Brubaker, E., Budagov, J., Budd, H. S., Burkett, K., Busetto, G., Bussey, P., Byrum, K. L., Cabrera, S., Campanelli, M., Campbell, M., Canelli, F., Canepa, A., Casarsa, M., Carlsmith, D., Carosi, R., Carron, S., Cavalli-Sforza, M., Castro, A., Catastini, P., Cauz, D., Cerri, A., Cerrito, L., Chapman, J., Chen, Y. C., Chertok, M., Chiarelli, G., Chlachidze, G., Chlebana, F., Cho, I., Cho, K., Chokheli, D., Chou, J. P., Chuang, S., Chung, K., Chung, W-H., Chung, Y. S., Cijliak, M., Ciobanu, C. I., Ciocci, M. A., Clark, A. G., Clark, D., Coca, M., Connolly, A., Convery, M., Conway, J., Cooper, B., Copic, K., Cordelli, M., Cortiana, G., Cranshaw, J., Cuevas, J., Cruz, A., Culbertson, R., Currat, C., Cyr, D., Dagenhart, D., DaRonco, S., D'Auria, S., deBarbaro, P., DeCecco, S., Deisher, A., DeLentdecker, G., Dell'Orso, M., Demers, S., Demortier, L., Deninno, M., DePedis, D., Derwent, P. F., Devlin, T., Dionisi, C., Dittmann, J. R., DiTuro, P., Dörr, C., Dominguez, A., Donati, S., Donega, M., Donini, J., D'Onofrio, M., Dorigo, T., Ebina, K., Efron, J., Ehlers, J., Erbacher, R., Erdmann, M., Errede, D., Errede, S., Eusebi, R., Fang, H-C., Farrington, S., Fedorko, I., Fedorko, W. T., Feild, R. G., Feindt, M., Fernandez, J. P., Field, R. D., Flanagan, G., Flores-Castillo, L. R., Foland, A., Forrester, S., Foster, G. W., Franklin, M., Freeman, J. C., Fujii, Y., Furic, I., Gajjar, A., Gallinaro, M., Galyardt, J., Garcia-Sciveres, M., Garfinkel, A. F., Gay, C., Gerberich, H., Gerdes, D. W., Gerchtein, E., Giagu, S., Giannetti, P., Gibson, A., Gibson, K., Ginsburg, C., Giolo, K., Giordani, M., Giunta, M., Giurgiu, G., Glagolev, V., Glenzinski, D., Gold, M., Goldschmidt, N., Goldstein, D., Goldstein, J., Gomez, G., Gomez-Ceballos, G., Goncharov, M., González, O., Gorelov, I., Goshaw, A. T., Gotra, Y., Goulianos, K., Gresele, A., Griffiths, M., Grosso-Pilcher, C., Grundler, U., GuimaraesdaCosta, J., Haber, C., Hahn, K., Hahn, S. R., Halkiadakis, E., Hamilton, A., Han, B-Y., Handler, R., Happacher, F., Hara, K., Hare, M., Harr, R. F., Harris, R. M., Hartmann, F., Hatakeyama, K., Hauser, J., Hays, C., Hayward, H., Heinemann, B., Heinrich, J., Hennecke, M., Herndon, M., Hill, C., Hirschbuehl, D., Hocker, A., Hoffman, K. D., Holloway, A., Hou, S., Houlden, M. A., Huffman, B. T., Huang, Y., Hughes, R. E., Huston, J., Ikado, K., Incandela, J., Introzzi, G., Iori, M., Ishizawa, Y., Issever, C., Ivanov, A., Iwata, Y., Iyutin, B., James, E., Jang, D., Jayatilaka, B., Jeans, D., Jensen, H., Jeon, E. J., Jones, M., Joo, K. K., Jun, S. Y., Junk, T., Kamon, T., Kang, J., KaragozUnel, M., Karchin, P. E., Kato, Y., Kemp, Y., Kephart, R., Kerzel, U., Khotilovich, V., Kilminster, B., Kim, D. H., Kim, H. S., Kim, J. E., Kim, M. J., Kim, M. S., Kim, S. B., Kim, S. H., Kim, Y. K., Kirby, M., Kirsch, L., Klimenko, S., Klute, M., Knuteson, B., Ko, B. R., Kobayashi, H., Kong, D. J., Kondo, K., Konigsberg, J., Kordas, K., Korn, A., Korytov, A., Kotwal, A. V., Kovalev, A., Kraus, J., Kravchenko, I., Kreymer, A., Kroll, J., Kruse, M., Krutelyov, V., Kuhlmann, S. E., Kwang, S., Laasanen, A. T., Lai, S., Lami, S., Lammel, S., Lancaster, M., Lander, R., Lannon, K., Lath, A., Latino, G., Lazzizzera, I., Lecci, C., LeCompte, T., Lee, J., Lee, S. W., Lefèvre, R., Leonardo, N., Leone, S., Levy, S., Lewis, J. D., Li, K., Lin, C., Lin, C. S., Lindgren, M., Lipeles, E., Liss, T. M., Lister, A., Litvintsev, D. O., Liu, T., Liu, Y., Lockyer, N. S., Loginov, A., Loreti, M., Loverre, P., Lu, R-S., Lucchesi, D., Lujan, P., Lukens, P., Lungu, G., Lyons, L., Lys, J., Lysak, R., Lytken, E., MacQueen, D., Madrak, R., Maeshima, K., Maksimovic, P., Manca, G., Margaroli, F., Marginean, R., Marino, C., Martin, A., Martin, M., Martin, V., Martínez, M., Maruyama, T., Matsunaga, H., Mattson, M., Mazzanti, P., McFarland, K. S., McGivern, D., McIntyre, P. M., McNamara, P., McNulty, R., Mehta, A., Menzemer, S., Menzione, A., Merkel, P., Mesropian, C., Messina, A., Miao, T., Miladinovic, N., Miles, J., Miller, L., Miller, R., Miller, J. S., Mills, C., Miquel, R., Miscetti, S., Mitselmakher, G., Miyamoto, A., Moggi, N., Mohr, B., Moore, R., Morello, M., MovillaFernandez, P. A., Muelmenstaedt, J., Mukherjee, A., Mulhearn, M., Muller, T., Mumford, R., Munar, A., Murat, P., Nachtman, J., Nahn, S., Nakano, I., Napier, A., Napora, R., Naumov, D., Necula, V., Nielsen, J., Nelson, T., Neu, C., Neubauer, M. S., Nigmanov, T., Nodulman, L., Norniella, O., Ogawa, T., Oh, S. H., Oh, Y. D., Ohsugi, T., Okusawa, T., Oldeman, R., Orava, R., Orejudos, W., Osterberg, K., Pagliarone, C., Palencia, E., Paoletti, R., Papadimitriou, V., Paramonov, A. A., Pashapour, S., Patrick, J., Pauletta, G., Paulini, M., Paus, C., Pellett, D., Penzo, A., Phillips, T. J., Piacentino, G., Piedra, J., Pitts, K. T., Plager, C., Pondrom, L., Pope, G., Portell, X., Poukhov, O., Pounder, N., Prakoshyn, F., Pronko, A., Proudfoot, J., Ptohos, F., Punzi, G., Rademacker, J., Rahaman, M. A., Rakitine, A., Rappoccio, S., Ratnikov, F., Ray, H., Reisert, B., Rekovic, V., Renton, P., Rescigno, M., Rimondi, F., Rinnert, K., Ristori, L., Robertson, W. J., Robson, A., Rodrigo, T., Rolli, S., Roser, R., Rossin, R., Rott, C., Russ, J., Rusu, V., Ruiz, A., Ryan, D., Saarikko, H., Sabik, S., Safonov, A., Denis, R. St., Sakumoto, W. K., Salamanna, G., Saltzberg, D., Sanchez, C., Santi, L., Sarkar, S., Sato, K., Savard, P., Savoy-Navarro, A., Schlabach, P., Schmidt, E. E., Schmidt, M. P., Schmitt, M., Schwarz, T., Scodellaro, L., Scott, A. L., Scribano, A., Scuri, F., Sedov, A., Seidel, S., Seiya, Y., Semenov, A., Semeria, F., Sexton-Kennedy, L., Sfiligoi, I., Shapiro, M. D., Shears, T., Shepard, P. F., Sherman, D., Shimojima, M., Shochet, M., Shon, Y., Shreyber, I., Sidoti, A., Sill, A., Sinervo, P., Sisakyan, A., Sjolin, J., Skiba, A., Slaughter, A. J., Sliwa, K., Smirnov, D., Smith, J. R., Snider, F. D., Snihur, R., Soderberg, M., Soha, A., Somalwar, S. V., Spalding, J., Spezziga, M., Spinella, F., Squillacioti, P., Stadie, H., Stanitzki, M., Stelzer, B., Stelzer-Chilton, O., Stentz, D., Strologas, J., Stuart, D., Suh, J. S., Sukhanov, A., Sumorok, K., Sun, H., Suzuki, T., Taffard, A., Tafirout, R., Takano, H., Takashima, R., Takeuchi, Y., Takikawa, K., Tanaka, M., Tanaka, R., Tanimoto, N., Tecchio, M., Teng, P. K., Terashi, K., Tesarek, R. J., Tether, S., Thom, J., Thompson, A. S., Thomson, E., Tipton, P., Tiwari, V., Tkaczyk, S., Toback, D., Tollefson, K., Tomura, T., Tonelli, D., Tönnesmann, M., Torre, S., Torretta, D., Tourneur, S., Trischuk, W., Tsuchiya, R., Tsuno, S., Tsybychev, D., Turini, N., Ukegawa, F., Unverhau, T., Uozumi, S., Usynin, D., Vacavant, L., Vaiciulis, A., Varganov, A., VejcikIII, S., Velev, G., Veszpremi, V., Veramendi, G., Vickey, T., Vidal, R., Vila, I., Vilar, R., Vollrath, I., Volobouev, I., vonderMey, M., Wagner, P., Wagner, R. G., Wagner, R. L., Wagner, W., Wallny, R., Walter, T., Wan, Z., Wang, M. J., Wang, S. M., Warburton, A., Ward, B., Waschke, S., Waters, D., Watts, T., Weber, M., WesterIII, W. C., Whitehouse, B., Whiteson, D., Wicklund, A. B., Wicklund, E., Williams, H. H., Wilson, P., Winer, B. L., Wittich, P., Wolbers, S., Wolfe, C., Wolter, M., Worcester, M., Worm, S., Wright, T., Wu, X., Würthwein, F., Wyatt, A., Yagil, A., Yamashita, T., Yamamoto, K., Yamaoka, J., Yang, C., Yang, U. K., Yao, W., Yeh, G. P., Yoh, J., Yorita, K., Yoshida, T., Yu, I., Yu, S., Yun, J. C., Zanello, L., Zanetti, A., Zaw, I., Zetti, F., Zhou, J., and Zucchelli, S.
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High Energy Physics - Experiment - Abstract
We report on a search for pair production of first-generation scalar leptoquarks ($LQ$) in $p \bar{p}$ collisions at $\sqrt{s}$=1.96 TeV using an integrated luminosity of 203 $pb^{-1}$ collected at the Fermilab Tevatron collider by the CDF experiment. We observe no evidence for $LQ$ production in the topologies arising from $LQ \bar{LQ} \to eqeq$ and $LQ \bar{LQ} \to eq \nu q$, and derive 95% C.L. upper limits on the $LQ$ production cross section. %as a function of $\beta$, where $\beta$ is the branching fraction for $LQ \to eq$. The results are combined with those obtained from a separately reported CDF search in the topology arising from $LQ\bar{LQ} \to \nu q \nu q$ and 95% C.L. lower limits on the LQ mass as a function of $\beta = BR(LQ \to eq) $ are derived. The limits are 236, 205 and 145 GeV/c$^2$ for $\beta$ = 1, $\beta$ = 0.5 and $\beta$ = 0.1, respectively., Comment: submitted to PRL
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- 2005
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150. Manual dexterity in late childhood is associated with maturation of the corticospinal tract
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Ian Fuelscher, Christian Hyde, Daryl Efron, and Timothy J. Silk
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Corticospinal tract ,Fixel-based analysis ,Manual dexterity ,White matter ,Development ,Longitudinal ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Purpose: Despite the important role of manual dexterity in child development, the neurobiological mechanisms associated with manual dexterity in childhood remain unclear. We leveraged fixel-based analysis (FBA) to examine the longitudinal association between manual dexterity and the development of white matter structural properties in the corticospinal tract (CST). Methods: High angular diffusion weighted imaging (HARDI) data were acquired for 44 right-handed typically developing children (22 female) aged 9-13 across two timepoints (timepoint 1: mean age 10.5 years ± 0.5 years, timepoint 2: 11.8 ± 0.5 years). Manual dexterity was assessed using the Grooved Pegboard Test, a widely used measure of manual dexterity. FBA-derived measures of fiber density and morphology were generated for the CST at each timepoint. Connectivity-based fixel enhancement and mixed linear modelling were used to examine the longitudinal association between manual dexterity and white matter structural properties of the CST. Results: Longitudinal mixed effects models showed that greater manual dexterity of the dominant hand was associated with increased fiber cross-section in the contralateral CST. Analyses further demonstrated that the rate of improvement in manual dexterity was associated with the rate of increase in fiber cross-section in the contralateral CST between the two timepoints. Conclusion: Our longitudinal data suggest that the development of manual dexterity in late childhood is associated with maturation of the CST. These findings significantly enhance our understanding of the neurobiological systems that subserve fine motor development and provide an important step toward mapping normative trajectories of fine motor function against microstructural and morphological development in childhood.
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- 2021
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