Search

By using recent developments for the Langevin dynamics of spatially asymmetric systems, we routinely generalize the Onsager-Machlup fluctuation theory of the second order in time. In this form, it becomes applicable to fluctuating variables, including hydrodynamic currents, in equilibrium as well as nonequilibrium steady states. From the solution of the obtained stochastic equations we derive an analytical expression for the time autocorrelation function of a general fluctuating quantity. This theoretical result is then tested in a study of a shear flow by molecular dynamics simulations. The proposed form of the time autocorrelation function yields an excellent fit to our computational data for both equilibrium and nonequilibrium steady states. Unlike the analogous result of the first-order Onsager-Machlup theory, our expression correctly describes the short-time correlations. Its utility is demonstrated in an application of the Green-Kubo formula for the transport coefficient. Curiously, the normalized time autocorrelation function for the shear flow, which only depends on the deterministic part of the fluctuation dynamics, appears independent of the external shear force in the linear nonequilibrium regime.

In this paper, we generalize the theory of Brownian motion and the Onsager-Machlup theory of fluctuations for spatially symmetric systems to equilibrium and nonequilibrium steady-state systems with a preferred spatial direction, due to an external force. To do this, we extend the Langevin equation to include a bias, which is introduced by the external force and alters the Gaussian structure of the system's fluctuations. By solving this extended equation, we demonstrate that the statistical properties of the fluctuations in these systems can be predicted from physical observables, such as the temperature and the hydrodynamic gradients., Comment: 1 figure

This paper consists of a few results, discovered and proved during the 2012-2013 research group at Eastern Oregon University. Inertia tables are a visual representation of the possible inertias of a given graph. The inertia of a graph counts the number of real positive and negative eigenvalues of its corresponding adjacency matrix. The problem of studying inertia tables is directly related to the inverse eigenvalue problem and can be used as a tool for the minimum rank problem. This paper describes the inverse eigenvalue problem, and tools used. We describe a number of new general formulas for various simple undirected graphs and improved upon an established notation for inertia tables., Comment: Published in Eastern Oregon Science Journal

We investigate the motion of a single particle moving on a two-dimensional square lattice whose sites are occupied by right and left rotators. These left and right rotators deterministically rotate the particle's velocity to the right or left, respectively and \emph{flip} orientation from right to left or from left to right after scattering the particle. We study three types of configurations of left and right rotators, which we think of as types of media, through with the particle moves. These are completely random (CR), random periodic (RP), and completely periodic (CP) configurations. For CR configurations the particle's dynamics depends on the ratio $r$ of right to left scatterers in the following way. For small $r\simeq0$, when the configuration is nearly homogeneous, the particle subdiffuses with an exponent of 2/3, similar to the diffusion of a macromolecule in a crowded environment. Also, the particle's trajectory has a fractal dimension of $d_f\simeq4/3$, comparable to that of a self-avoiding walk. As the ratio increases to $r\simeq 1$, the particle's dynamics transitions from subdiffusion to anomalous diffusion with a fractal dimension of $d_f\simeq 7/4$, similar to that of a percolating cluster in 2-d. In RP configurations, which are more structured than CR configurations but also randomly generated, we find that the particle has the same statistic as in the CR case. In contrast, CP configurations, which are highly structured, typically will cause the particle to go through a transient stage of subdiffusion, which then abruptly changes to propagation. Interestingly, the subdiffusive stage has an exponent of approximately 2/3 and a fractal dimension of $d_f\simeq4/3$, similar to the case of CR and RP configurations for small $r$., Comment: 16 pages, 9 figures

For systems in nonequilibrium steady states, a novel modulated Gaussian probability distribution is derived to incorporate a new phenomenon of biased current fluctuations, discovered by recent laboratory experiments and confirmed by molecular dynamics simulations. Our results consistently extend Onsager-Machlup fluctuation theory for systems in thermal equilibrium. Connections with the principles of Statistical Mechanics due to Boltzmann and Gibbs are discussed. At last, the modulated Gaussian distribution is of potential interest for other statistical disciplines, which make use of the Large Deviation theory., Comment: 10 pages, 2 figures

One of the most intriguing aspects of Quantum Mechanics is the impossibility of measuring at the same time observables corresponding to non-commuting operators. This impossibility can be partially relaxed when considering joint or sequential weak values evaluation. Indeed, weak measurements have been a real breakthrough in the quantum measurement framework that is of the utmost interest from both a fundamental and an applicative point of view. Here we show how we realized, for the first time, a sequential weak value evaluation of two incompatible observables on a single photon., Comment: 5 pages, 3 figures

We study the motion of a particle moving on a two-dimensional honeycomb lattice, whose sites are randomly occupied by either right or left rotators, which rotate the particle's velocity to its right or left, according to deterministic rules. In the model we consider, the scatterers are each initially oriented to the right with probability $p\in[0,1]$. This is done independently, so that the initial configuration of scatterers, which forms the medium through which the particle moves, are both independent and identically distributed. For $p\in(0,1)$, we show that as the particle moves through the lattice, it creates a number of reflecting structures. These structures ultimately \emph{limit} the particle's motion, causing it to have a periodic trajectory. As $p$ approaches either 0 or 1, and the medium becomes increasingly homogenous, the particle's dynamics undergoes a discontinuous transition from this self-limiting, periodic motion to a self-avoiding motion, where the particle's trajectory, away from its initial position, is a self-avoiding walk. Additionally, we show that the periodic dynamics observed for $p\in(0,1)$ can persist, even if the initial configuration of scatterers are not identically distributed. Furthermore, we show that if these orientations are not chosen independently, this can drastically change the particle's motion causing it to have a behavior that is nonperiodic., Comment: 35 pages, 14 figures

The Cramer-Rao lower bound for the estimation of the affine transformation parameters in a multivariate heteroscedastic errors-in-variables model is derived. The model is suitable for feature-based image registration in which both sets of control points are localized with errors whose covariance matrices vary from point to point. With focus given to the registration of fluorescence microscopy images, the Cramer-Rao lower bound for the estimation of a feature's position (e.g. of a single molecule) in a registered image is also derived. In the particular case where all covariance matrices for the localization errors are scalar multiples of a common positive definite matrix (e.g. the identity matrix), as can be assumed in fluorescence microscopy, then simplified expressions for the Cramer-Rao lower bound are given. Under certain simplifying assumptions these expressions are shown to match asymptotic distributions for a previously presented set of estimators. Theoretical results are verified with simulations and experimental data.

It is shown that the most important feature of Non-Equilibrium Thermodynamics is not the entropy production, but the organization of the currents in order to flow. This is also needed to obtain the maximum entropy in the equilibrium state, as is required by Equilibrium Thermodynamics., Comment: 6 pages, 1 figure

A dynamical theory for the organization and dissipation of a current in a non-equilibrium fluid near equilibrium is presented. This is based on the Lyapunov exponents of the phase space of the system., Comment: 4pgs

We study the motion of a particle on the two-dimensional honeycomb lattice, whose sites are occupied by either flipping rotators or flipping mirrors, which scatter the particle according to a deterministic rule. For both types of scatterers we find a new type of motion that has not been observed in a Lorentz Lattice gas, where the particle's trajectory is a self-avoiding walk between returns to its initial position. We show that this behavior is a consequence of the deterministic scattering rule and the particular class of initial scatterer configurations we consider. Since self-avoiding walks are one of the main tools used to model the growth of crystals and polymers, the particle's motion in this class of systems is potentially important for the study of these processes., Comment: 32 pages, 18 figures

Conventional Non-equilibrium Thermodynamics is mainly concerned with systems in local equilibrium and their entropy production, due to the irreversible processes which take place in these systems. In this paper fluids will be considered in a state of local equilibrium. We argue that the main feature of such systems is not the entropy production, but the organization of the flowing currents in such systems. These currents do not only have entropy production, but must also have an organization needed to flow in a certain direction. It is the latter, which is the source of the equilibrium entropy, when the fluid goes from a local equilibrium state and to an equilibrium state. This implies a transmutation of the local equilibrium current's organization into the equilibrium entropy. Alternatively, when a fluid goes from an equilibrium state to a local equilibrium state, its entropy transmutes into the organization of the currents of that state.

Is is argued that the stretching experiments done on RNA in water can be described as a reversible process by Classical Thermodynamics., Comment: 3 pages

The transition from a non-equilibrium state to an equilibrium state is characterized not only by the disappearance of the entropy production, but mainly by the disappearance of the organized currents, due to the gradients present in a non-equilibrium system. Their disappearance is necessary to obtain maximum entropy in the equilibrium state.

Boltzmann's Principle S = k ln W was repeatedly criticized by Einstein since it lacked a proper dynamical foundation in view of the thermal motion of the particles, out of which a physical system consists. This suggests, in particular, that the statistical mechanics of a system in thermal equilibrium should be based on dynamics. As an example, a dynamical derivation of the density expansions of the two-particle distribution function, as well as of the thermodynamic properties of a moderately dense gas in thermal equilibrium, is outlined here. This is a different derivation than the usual one based on Gibbs' probabilistic canonical ensemble, where dynamics is eliminated at the beginning and equilibrium statistical mechanics is reduced to statics. It is argued that the present derivation in this paper could, in principle, also be applied to other equilibrium properties and perhaps also to other fields.

The theoretical Green-Kubo relation for viscosity is tested using experimentally obtained data. In a dusty plasma experiment, micron-size dust particles are introduced into a partially-ionized argon plasma, where they become negatively charged. They are electrically levitated to form a single-layer Wigner crystal, which is subsequently melted using laser heating. In the liquid phase, these dust particles experience interparticle electric repulsion, laser heating, and friction from the ambient neutral argon gas, and they can be considered to be in a nonequilibrium steady state. Direct measurements of the positions and velocities of individual dust particles are then used to obtain a time series for an off-diagonal element of the stress tensor and its time autocorrelation function. This calculation also requires the interparticle potential, which was not measured experimentally, but was obtained using a Debye-H\"{u}ckel-type model with experimentally determined parameters. Integrating the autocorrelation function over time yields the viscosity for shearing motion amongst dust particles. The viscosity so obtained is found to agree with results from a previous experiment using a hydrodynamical Navier-Stokes equation. This comparison serves as a test of the Green-Kubo relation for viscosity. Our result is also compared to the predictions of several simulations., Comment: 11 pages, 5 figures, 1 table, in press Physical Review E 2011

We analyze the tunneling of vortex states from elliptically shaped traps. Using the hydrodynamic representation of the Gross-Pitaevskii (Nonlinear Schr\"odinger) equation, we derive analytically and demonstrate numerically a novel type of quantum fluid flow: a jet-like singularity formed by the interaction between the vortex and the nonhomogenous field. For strongly elongated traps, the ellipticity overwhelms the circular rotation, resulting in the ejection of field in narrow, well-defined directions. These jets can also be understood as a formation of caustics since they correspond to a convergence of trajectories starting from the top of the potential barrier and meeting at a certain point on the exit line. They will appear in any coherent wave system with angular momentum and non-circular symmetry, such as superfluids, Bose-Einstein condensates, and light., Comment: 4 pages, 4 figures

We investigate a model for the dynamics of a solid object, which moves over a randomly vibrating solid surface and is subject to a constant external force. The dry friction between the two solids is modeled phenomenologically as being proportional to the sign of the object's velocity relative to the surface, and therefore shows a discontinuity at zero velocity. Using a path integral approach, we derive analytical expressions for the transition probability of the object's velocity and the stationary distribution of the work done on the object due to the external force. From the latter distribution, we also derive a fluctuation relation for the mechanical work fluctuations, which incorporates the effect of the dry friction., Comment: v1: 23 pages, 9 figures; v2: Reference list corrected; v3: Published version, typos corrected, references added

The Terrestrial Planet Finder Coronagraph (TPF-C) mission presented here is an existence proof for a flagship-class internal coronagraph space mission capable of detecting and characterizing Earth-like planets and planetary systems at visible wavelengths around nearby stars, using an existing launch vehicle. TPF-C will use spectroscopy to measure key properties of exoplanets including the presence of atmospheric water or oxygen, powerful signatures in the search for habitable worlds.

Using a path integral approach, we derive an analytical solution of a nonlinear and singular Langevin equation, which has been introduced previously by P.-G. de Gennes as a simple phenomenological model for the stick-slip motion of a solid object on a vibrating horizontal surface. We show that the optimal (or most probable) paths of this model can be divided into two classes of paths, which correspond physically to a sliding or slip motion, where the object moves with a non-zero velocity over the underlying surface, and a stick-slip motion, where the object is stuck to the surface for a finite time. These two kinds of basic motions underlie the behavior of many more complicated systems with solid/solid friction and appear naturally in de Gennes' model in the path integral framework., Comment: 18 pages, 3 figures

We consider a particle, confined to a moving harmonic potential, under the influence of friction and external asymmetric Poissonian shot noise (PSN). We study the fluctuations of the work done to maintain this system in a nonequilibrium steady state. PSN generalizes the usual Gaussian noise and can be considered to be a paradigm of external noise, where fluctuation and dissipation originate from physically independent mechanisms. We consider two scenarios: (i) the noise is given purely by PSN and (ii) in addition to PSN the particle is subject to white Gaussian noise. In both cases we derive exact expressions for the large deviation form of the work distribution, which are characterized by the time scales of the system. We show that the usual steady state fluctuation theorem is violated in our model and that in a certain parameter regime large negative work fluctuations are more likely to occur than the corresponding positive ones, though the average work is always positive., Comment: 22 pages, 17 figures

We complement and extend our work on fluctuation relations arising in nonequilibrium systems in steady states driven by L\'evy noise [Phys. Rev. E 76, 020101(R) (2006)]. As a concrete example, we consider a particle subjected to a drag force and a L\'evy white noise with tail index $\mu\in (0,2]$, and calculate the probability distribution of the work done on the particle by the drag force, as well as the probability distribution of the work dissipated by the dragged particle in a nonequilibrium steady state. For $0<\mu<2$, both distributions satisfy what we call an anomalous fluctuation relation, characterized by positive and negative fluctuations that asymptotically have the same probability. For $\mu=2$, by contrast, the work and dissipated work distributions satisfy the known conventional and extended fluctuation relations, respectively, which are both characterized by positive fluctuations that are exponentially more probable than negative fluctuations. The difference between these different fluctuation relations is discussed in the context of large deviation theory. Experiments that could probe or reveal anomalous fluctuation relations are also discussed., Comment: v1: 14 pages, 5 figures, RevTeX format. v2: 12 pages, many changes to the text, close to published version