2,788 results on '"Clay, J"'
Search Results
102. Phenotypic Variation in Phytochemical Defense of Trembling Aspen in Western North America: Genetics, Development, and Geography
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Richard L. Lindroth, Stuart C. Wooley, Jack R. Donaldson, Kennedy F. Rubert-Nason, Clay J. Morrow, and Karen E. Mock
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General Medicine ,Biochemistry ,Ecology, Evolution, Behavior and Systematics - Published
- 2023
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103. Online Variational Approximations to non-Exponential Family Change Point Models: With Application to Radar Tracking.
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Ryan D. Turner, Steven Bottone, and Clay J. Stanek
- Published
- 2013
104. The Octadecanoid Pathway, but Not COI1, Is Required for Nectar Secretion in Arabidopsis thaliana
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Anthony J. Schmitt, Rahul Roy, Peter M. Klinkenberg, Mengyuan Jia, and Clay J. Carter
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nectar ,nectaries ,jasmonic acid ,auxin ,F-box proteins ,SWEET9 ,Plant culture ,SB1-1110 - Abstract
Over 75% of crop species produce nectar and are dependent on pollinators to achieve maximum seed set, yet little is known about the mechanisms regulating nectar secretion. The phytohormone jasmonic acid (JA) is recognized to be involved in several plant processes including development and defense. JA was also recently shown to positively influence nectar secretion in both floral and extrafloral nectaries. For example, endogenous JA levels peak in flowers just prior to nectar secretion, but the details of how JA regulates nectar secretion have yet to be elucidated. We have found that the octadecanoid pathway does indeed play a role in the production and regulation of floral nectar in Arabidopsis. Null alleles for several JA biosynthesis and response genes had significantly reduced amounts of nectar, as well as altered expression of genes known to be involved in nectar production. We additionally identified crosstalk between the JA and auxin response pathways in nectaries. For example, the nectar-less JA synthesis mutant aos-2 showed no auxin response in nectaries, but both nectar production and the auxin response were restored upon exogenous JA and auxin treatment. Conversely, coi1-1, a JA-Ile-insensitive receptor mutant, displayed no auxin response in nectaries under any circumstance, even in older flowers that produced nectar. Surprisingly, opr3-1, a mutant for 12-oxophytodienoate reductase 3 [an enzyme further down the JA biosynthetic pathway that reduces 12-oxo phytodienoic acid (OPDA)], produced no nectar in newly opened flowers, but did secrete nectar in older flowers. Furthermore, a similar phenotype was observed in coi1-1. Cumulatively, these observations strongly suggest an indispensable role for an octadecanoic acid- and auxin-dependent, but JA- and COI1-dispensible, pathway in regulating nectar production in Arabidopsis.
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- 2018
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105. Sex-Dependent Variation of Pumpkin (Cucurbita maxima cv. Big Max) Nectar and Nectaries as Determined by Proteomics and Metabolomics
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Elizabeth C. Chatt, Patrick von Aderkas, Clay J. Carter, Derek Smith, Monica Elliott, and Basil J. Nikolau
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metabolomics ,proteomics ,nectar ,Cucurbita ,pumpkin ,floral sex ,Plant culture ,SB1-1110 - Abstract
Nectar is a floral reward that sustains mutualisms with pollinators, which in turn, improves fruit set. While it is known that nectar is a chemically complex solution, extensive identification and quantification of this complexity has been lacking. Cucurbita maxima cv. Big Max, like many cucurbits, is monoecious with separate male and female flowers. Attraction of bees to the flowers through the reward of nectar is essential for reproductive success in this economically valuable crop. In this study, the sex-dependent variation in composition of male and female nectar and the nectaries were defined using a combination of GC-MS based metabolomics and LC-MS/MS based proteomics. Metabolomics analysis of nectar detected 88 metabolites, of which 40 were positively identified, and includes sugars, sugar alcohols, aromatics, diols, organic acids, and amino acids. There are differences in 29 metabolites between male and female nectar. The nectar proteome consists of 45 proteins, of which 70% overlap between nectar types. Only two proteins are unique to female nectar, and 10 are specific to male nectar. The nectary proteome data, accessible at ProteomeXchange with identifier PXD009810, contained 339 identifiable proteins, 71% of which were descriptively annotatable by homology to Plantae. The abundance of 45 proteins differs significantly between male and female nectaries, as determined by iTRAQ labeling. This rich dataset significantly expands the known complexity of nectar composition, supports the hypothesis of H+-driven nectar solute export, and provides genetic and chemical targets to understand plant–pollinator interactions.
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- 2018
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106. Using Nectar-Related Traits to Enhance Crop-Pollinator Interactions
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Jarrad R. Prasifka, Rachel E. Mallinger, Zoe M. Portlas, Brent S. Hulke, Karen K. Fugate, Travis Paradis, Marshall E. Hampton, and Clay J. Carter
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nectar ,bees ,ecosystem services ,yield ,sunflower ,sucrose ,Plant culture ,SB1-1110 - Abstract
Floral nectar and other reward facilitate crop pollination, and in so doing, increase the amount and breadth of food available for humans. Though abundance and diversity of pollinators (particularly bees) have declined over the past several decades, a concomitant increase in reliance on pollinators presents a challenge to food production. Development of crop varieties with specific nectar or nectar-related traits to attract and retain pollinating insects is an appealing strategy to help address needs of agriculture and pollinators for several reasons. First, many crops have specific traits which have been identified to enhance crop–pollinator interactions. Also, an improved understanding of mechanisms that govern nectar-related traits suggest simplified phenotyping and breeding are possible. Finally, the use of nectar-related traits to enhance crop pollination should complement other measures promoting pollinators and will not limit options for crop production or require any changes by growers (other than planting varieties that are more attractive or rewarding to pollinators). In this article, we review the rationale for improving crop-pollinator interactions, the effects of specific plant traits on pollinator species, and use cultivated sunflowers as a case study. Recent research in sunflower has (i) associated variation in bee visitation with specific floral traits, (ii) quantified benefits of pollinators to hybrid yields, and (iii) used genetic resources in sunflower and other plants to find markers associated with key floral traits. Forthcoming work to increase pollinator rewards should enable sunflower to act as a model for using nectar-related traits to enhance crop–pollinator interactions.
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- 2018
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107. Varied Intrauterine Pressure- How to Ensure Complete Hysteroscopic Resection of Large Intramural Fibroids.
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Bar-El, L, Danneberger, J, Clay, J, and Bradley, LD
- Abstract
This video showcases the utilization of varied intrauterine pressure techniques to facilitate complete hysteroscopic resection of large intramural fibroids in a single procedure. This descriptive study presents the surgical technique with a visual demonstration of the procedure's execution. The video features surgical cases where hysteroscopic myomectomy is performed for the resection of intramural fibroids using the varied intrauterine pressure technique. Surgical cases demonstrating the implementation of varied intrauterine pressure techniques for hysteroscopic myomectomy are featured in the video. The video elucidates the dynamic nature of operative hysteroscopy, emphasizing the need for constant adjustment of intrauterine pressure throughout the procedure. Key concepts include strategic manipulation of pressure to optimize visualization on the one hand and minimize fluid extravasation on the other, facilitating the successful removal of large fibroids. By dynamically adjusting pressure, fibroids are enucleated from the myometrium into the cavity, enabling comprehensive resection. The technique underscores the importance of recognizing the border between the fibroid and the myometrial fascicles to prevent over-resection. Through immersive visual narration, viewers gain insight into the intricate execution of the procedure, elucidating the principles and intricacies of the varied intrauterine pressure technique. The video provides a comprehensive visual guide, demonstrating step-by-step execution of the procedure from a first-person perspective. Key concepts and intricacies of the technique are elucidated through narration and animation offering viewers an immersive learning experience. Varied intrauterine pressure techniques offer a promising approach for enhancing the efficacy of hysteroscopic myomectomy in the resection of large intramural fibroids. The video serves to illustrate this technique and its potential clinical applications. Achieving complete resection of large intramural fibroids through this technique has the potential to spare many patients from repeated surgeries and potential complications. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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108. Post-secretory synthesis of a natural analog of iron-gall ink in the black nectar ofMelianthusspp
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Evin T. Magner, Rahul Roy, Katrina Freund Saxhaug, Amod Zambre, Kaitlyn Bruns, Emilie C. Snell-Rood, Marshall Hampton, Adrian D. Hegeman, and Clay J. Carter
- Abstract
SUMMARYThe black nectar ofMelianthusflowers is thought to serve as a visual attractant to pollinators, but the chemical identity and synthesis of the black pigment are unknown. Here we report that the black nectar contains a natural analog of iron-gall ink, which humans have used since medieval times. Specifically, dark black nectar at anthesis contains high levels of ellagic acid and iron; synthetic solutions of ellagic acid and iron(III) recapitulate the black color of the nectar. Conversely, lightly colored nectars before and after anthesis contain significantly lower levels of ellagic acid and iron, but higher levels of gallic acid. We then explored the possibility of post-secretory synthesis of ellagic acid from gallic acid. Indeed,Melianthusnectar contains a peroxidase that oxidizes gallic acid to form ellagic acid. Reactions containing the nectar peroxidase, gallic acid, hydrogen peroxide, and iron can fully recreate the black color of the nectar. Visual modeling indicates that the black color is both visible and conspicuous to birds within the context of the flower. In summary, the black nectar ofMelianthusis derived from an ellagic acid-Fe complex analogous to iron-gall ink and is likely involved in the attraction of passerine bird pollinators.
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- 2022
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109. Acute localized pustular drug reaction to pembrolizumab
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Alexandra Pineiro, Kaitlin E Effle, Akhil Abraham, Clay J Cockerell, Stuart D Shanler, and Andrew L Ondo
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Dermatology ,General Medicine - Published
- 2022
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110. Characterization of cores from an in-situ recovery mined uranium deposit in Wyoming: Implications for post-mining restoration
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WoldeGabriel, G., Boukhalfa, H., Ware, S.D., Cheshire, M., Reimus, P., Heikoop, J., Conradson, S.D., Batuk, O., Havrilla, G., House, B., Simmons, A., Clay, J., Basu, A., Christensen, J.N., Brown, S.T., and DePaolo, D.J.
- Published
- 2014
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111. Artificial intelligence in Dermatopathology
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Jartarkar, Shishira R., primary, Cockerell, Clay J., additional, Patil, Anant, additional, Kassir, Martin, additional, Babaei, Mahsa, additional, Weidenthaler‐Barth, Beate, additional, Grabbe, Stephan, additional, and Goldust, Mohamad, additional
- Published
- 2022
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112. Post-secretory synthesis of a natural analog of iron-gall ink in the black nectar ofMelianthusspp.
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Magner, Evin T., primary, Roy, Rahul, additional, Saxhaug, Katrina Freund, additional, Zambre, Amod, additional, Bruns, Kaitlyn, additional, Snell-Rood, Emilie C., additional, Hampton, Marshall, additional, Hegeman, Adrian D., additional, and Carter, Clay J., additional
- Published
- 2022
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113. Update of pathophysiology and treatment options of seborrheic keratosis
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Gorai, Surajit, primary, Ahmad, Shahzaib, additional, Raza, Syeda Sadia Masood, additional, Khan, Hadin Darain, additional, Raza, Muhammad Asad, additional, Etaee, Farshid, additional, Cockerell, Clay J., additional, Apalla, Zoe, additional, and Goldust, Mohamad, additional
- Published
- 2022
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114. Progressive damage modeling of plain weave E-glass/phenolic composites
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Jordan, Joseph B., Naito, Clay J., and (Gama) Haque, Bazle Z.
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- 2014
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115. An experimental investigation of the effect of nose shape on fragments penetrating GFRP
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Jordan, Joseph B. and Naito, Clay J.
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- 2014
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116. Pemphigus Foliaceus
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McLennan, Alexandra L., Cockerell, Clay J., and Ren, Vicky Z.
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- 2024
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117. 109 - Benign Epidermal Tumors and Proliferations
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Requena, Luis, Requena, Celia, and Cockerell, Clay J.
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- 2025
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118. Comorbidities in patients with central centrifugal cicatricial alopecia: a case–control study.
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Joshi, Tejas P., Duruewuru, Anthony, Garcia, Danielle, Mireles, Nabor, Truong, Paulina, and Cockerell, Clay J.
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ALOPECIA areata ,BALDNESS ,CASE-control method ,SJOGREN'S syndrome ,AUTOIMMUNE thyroiditis - Abstract
This article discusses the comorbidities associated with central centrifugal cicatricial alopecia (CCCA), a type of scarring hair loss that primarily affects middle-aged African American women. The study used the National Institute of Health's All of Us research program to investigate the prevalence of comorbid diseases in CCCA patients. The findings suggest that CCCA patients have a higher likelihood of metabolic abnormalities, autoimmune conditions, atopy, and psychiatric comorbidities. The study highlights the importance of screening for these comorbidities in CCCA patients and further research to understand the underlying mechanisms of the disease. [Extracted from the article]
- Published
- 2024
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119. Commentary on Atypical Melanocytic Proliferations
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Cockerell, Clay J.
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- 2018
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120. Subacute Cutaneous Lupus Erythematosus-Like Drug Eruption Related to Terbinafine in a Male
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Clay J. Cockerell, Sidra Ibad, Parneet Dhaliwal, Haley Danielle Heibel, and Sharif Currimbhoy
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medicine.medical_specialty ,business.industry ,Connective tissue ,medicine.disease ,Dermatology ,Drug eruption ,Subacute cutaneous lupus erythematosus ,medicine.anatomical_structure ,Male patient ,Collagen vascular disease ,medicine ,Terbinafine ,business ,medicine.drug - Abstract
Patients with a history of or a predisposition to autoimmune or collagen vascular diseases are inclined to develop drug-induced subacute cutaneous lupus erythematosus (SCLE) due to terbinafine therapy. Here, we report a case of terbinafine-induced SCLE in a male patient, although classic SCLE most commonly affects females, and he did not have a diagnosis of or a history suggestive of a predisposition to autoimmune or collagen vascular diseases. Although the mechanism for terbinafine-induced SCLE has not been fully elucidated, we suggest that there may be distinctive mechanisms of terbinafine-induced SCLE of patients with and without a predisposition to or history of autoimmune or connective tissue diseases, which should be a focus of future research.
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- 2021
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121. The Mediæval Hospitals of England
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Rotha Mary Clay, J. Charles (John Charles) Cox
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- 2015
122. Beyond "greening" and "browning": Trends in grassland ground cover fractions across Eurasia that account for spatial and temporal autocorrelation.
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Ewa Lewińska, Katarzyna, Ives, Anthony R., Morrow, Clay J., Rogova, Natalia, He Yin, Elsen, Paul R., de Beurs, Kirsten, Hostert, Patrick, and Radeloff, Volker C.
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GROUND cover plants ,GRASSLANDS ,LAND cover ,LAND degradation ,BIODIVERSITY conservation ,REMOTE sensing - Abstract
Grassland ecosystems cover up to 40% of the global land area and provide many ecosystem services directly supporting the livelihoods of over 1 billion people. Monitoring long-term changes in grasslands is crucial for food security, biodiversity conservation, achieving Land Degradation Neutrality goals, and modeling the global carbon budget. Although long-term grassland monitoring using remote sensing is extensive, it is typically based on a single vegetation index and does not account for temporal and spatial autocorrelation, which means that some trends are falsely identified while others are missed. Our goal was to analyze trends in grasslands in Eurasia, the largest continuous grassland ecosystems on Earth. To do so, we calculated Cumulative Endmember Fractions (annual sums of monthly ground cover fractions) derived from MODIS 2002-2020 time series, and applied a new statistical approach PARTS that explicitly accounts for temporal and spatial autocorrelation in trends. We examined trends in green vegetation, non-photosynthetic vegetation, and soil ground cover fractions considering their independent change trajectories and relations among fractions over time. We derived temporally uncorrelated pixel-based trend maps and statistically tested whether observed trends could be explained by elevation, land cover, SPEI3, climate, country, and their combinations, all while accounting for spatial autocorrelation. We found no statistical evidence for a decrease in vegetation cover in grasslands in Eurasia. Instead, there was a significant map-level increase in non-photosynthetic vegetation across the region and local increases in green vegetation with a concomitant decrease in soil fraction. Independent environmental variables affected trends significantly, but effects varied by region. Overall, our analyses show in a statistically robust manner that Eurasian grasslands have changed considerably over the past two decades. Our approach enhances remote sensing-based monitoring of trends in grasslands so that underlying processes can be discerned. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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123. Traffic-based quantitative risk analysis of structural fire damage to roadway tunnel linings.
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Guo, Qi, Quiel, Spencer E., and Naito, Clay J.
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TUNNEL lining ,FIRE risk assessment ,RAILROAD tunnels ,HEAT release rates ,QUANTITATIVE research ,TRAFFIC flow ,FIREPROOFING agents ,FIRE resistant polymers - Abstract
This paper demonstrates a quantitative risk analysis (QRA) approach of fire-induced damage to the reinforced concrete linings in roadway tunnels. Large fire events associated with buses and heavy goods vehicles are the focus of this study because their impact on the tunnel linings is structurally significant versus fires from smaller vehicles. The proposed approach accounts for stochastic variations of fire severity and frequency (based on traffic volume and the percentage breakdown by vehicle type) as well as the consequences (structural and economic) of thermal exposure to tunnel linings. The probabilistic distribution of fire size is developed using available weight-in-motion data, and combustible vehicle mass is correlated with the peak heat release rate using published test data and forensic reports. The heat transfer from the vehicle fire to the tunnel linings was modelled by a fast-running computational tool that was previously developed by the authors. Fire-induced damage to the tunnel linings is categorized into three levels of progressive strength reduction and cracking potential. Economic impacts are calculated in terms of estimated repair costs. The proposed approach enables informed decision making for the design or renovation of tunnel fire protection by quantifying the loss potential for severe fire hazards in a given tunnel. [ABSTRACT FROM AUTHOR]
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- 2023
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124. Seismic performance of precast concrete frames with debonded reinforcement
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Yuan, Huang, Weijian, Yi, Naito, Clay J., and Rui, Zhang
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- 2018
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125. Clinical update on cutaneous and subcutaneous sarcomas
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Jyoti Kumari, Kinnor Das, Anant Patil, Mahsa Babaei, Clay J. Cockerell, and Mohamad Goldust
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610 Medical sciences ,610 Medizin ,Dermatology - Abstract
Cutaneous sarcomas are uncommon cancers that can have a wide range of clinical symptoms and lead to considerable cutaneous as well as systemic morbidity.The objective of this review article is to discuss epidemiology, clinical features, diagnosis, and therapy of different types of cutaneous sarcomas.Literature was screened to retrieve articles from PubMed/Medline and Google Scholar and related websites. Cross-references from the relevant articles were also considered for review. Review articles, clinical studies, systematic reviews, meta-analyses, and relevant information from selected websites were included.Cutaneous sarcomas have a negative effect on the quality of life. In their diagnosis, clinical presentation and histological evaluation are crucial. Complete surgical removal is the solution for more or less all cutaneous and subcutaneous sarcomas. The prognosis for cutaneous sarcomas is generally favorable since they tend to recur locally with distant metastases only on rare occasions. Patients having advanced disease should be treated in the setting of clinical trials if possible; choices include radiation therapy and systemic medicines. The value of innovative immunotherapy cannot be determined decisively at this time due to a paucity of relevant trials.As cutaneous sarcomas are rarely diagnosed based on clinical findings, histology plays an important role in the diagnosis. They have a relatively favorable prognosis if treated properly. Patients should be treated at specialized centres.
- Published
- 2022
126. Tensile behavior of half grouted sleeve connections: experimental study and analytical modeling
- Author
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Yuan, Huang, Zhenggeng, Zhu, Naito, Clay J., and Weijian, Yi
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Grout (Mortar) -- Models -- Materials -- Properties -- Research ,Bond strength -- Research -- Properties ,Business ,Construction and materials industries - Abstract
ABSTRACT Half grouted sleeve connections, consisting of a threaded end and a grouted sleeve end, are a convenient and economical solution in joining rebars together in precast concrete construction. In [...]
- Published
- 2017
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127. Case of Metastatic Malignant Melanoma Simulating Granuloma Annulare
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Etan Marks, Haley Danielle Heibel, Parneet Dhaliwal, and Clay J. Cockerell
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Pathology ,medicine.medical_specialty ,Metastatic melanoma ,Right forearm ,business.industry ,Melanoma ,Nodule (medicine) ,medicine.disease ,Malignancy ,Metastatic malignant melanoma ,medicine ,Immunohistochemistry ,medicine.symptom ,business ,neoplasms ,Granuloma annulare - Abstract
Malignant melanoma and particularly metastatic melanoma represent a diagnostic challenge due to the wide variety of histologic patterns, resemblance to benign entities, and extensive range of clinical presentations. A high index of suspicion for melanoma is important for accurate diagnosis, especially when there is a previous history of malignancy. Here, we present a patient with a history of melanoma and locally metastatic melanoma, who subsequently developed a nodule on his right forearm near the site of his previous melanoma excision. Histologically, the melanoma appeared as granuloma annulare (GA) with benign cytologic features, but was identified as metastatic melanoma using SOX-10 immunohistochemical staining. Other malignancies, including lymphomas, leukemias, sarcomas, and cutaneous metastases of internal malignancies, have mimicked GA and interstitial granulomatous processes. Therefore, further immunohistochemical staining should be performed to assess for metastatic disease in the setting of a histological pattern that resembles a benign granulomatous process in a patient with a history of malignancy, including malignant melanoma.
- Published
- 2021
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128. Clinical update on cutaneous and subcutaneous sarcomas
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Kumari, Jyoti, primary, Das, Kinnor, additional, Patil, Anant, additional, Babaei, Mahsa, additional, Cockerell, Clay J., additional, and Goldust, Mohamad, additional
- Published
- 2022
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129. Pathobiology of Cutaneous Manifestations Associated with COVID-19 and Their Management
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Masood, Waniyah, primary, Ahmad, Shahzaib, additional, Khan, Noor Ayman, additional, Shakir, Amaima, additional, Rokni, Ghasem Rahmatpour, additional, Gold, Michael H., additional, Cockerell, Clay J., additional, Schwartz, Robert A., additional, and Goldust, Mohamad, additional
- Published
- 2022
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130. Quality properties of chicken meatballs prepared with varying proportions of woody breast meat
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Di Zhou, Xiao Sun, Clay J. Maynard, Juan P. Caldas-Cueva, Jinjie You, Huazhen Cai, and Ligen Xu
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0303 health sciences ,Chemistry ,0402 animal and dairy science ,Economic feasibility ,04 agricultural and veterinary sciences ,040201 dairy & animal science ,03 medical and health sciences ,Chewiness ,Free water ,Bound water ,Original Article ,Food science ,Quality characteristics ,030304 developmental biology ,Food Science - Abstract
The objective of this study was to explore the effect of woody breast (WB) on quality characteristics of chicken meatballs paired with the feasibility of its inclusion. Cook loss (CL), color (CIE L*, a*, b*), texture (hardness, springiness, chewiness and resilience), low-field NMR (bound water, immobilized water, and free water), microstructure, and sensory characteristics of chicken meatballs with different WB inclusion levels (0%, 25%, 50%, 75%, 100%) were analyzed. The results showed that the impairment of product quality traits such as CL, color, texture (hardness, chewiness), free water, microstructure, and sensory scores (appearance, organization, total score) increased as the percentage of WB meat increased in the product formulation, particularly when the WB incorporation level exceeded 25%. Indeed, cook loss, L*, a*, b* parameters, bound water, and immobilized water increased when the WB inclusion level was higher than 25% (P ≤ 0.05). However, free water, sensory characteristics, hardness, and chewiness parameters decreased (P ≤ 0.05). The microstructure of chicken meatballs also changed as the proportion of WB meat increased. Even though data suggest that the inclusion of WB meat up to 30% could be feasible to produce acceptable chicken meatballs, the optimal maximum incorporation rate of WB meat into chicken meatball recipes was 25% based on economic feasibility and final overall quality.
- Published
- 2021
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131. Nectar biosynthesis is conserved among floral and extrafloral nectaries
- Author
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Rahul Roy, Peter M. Klinkenberg, Clay J. Carter, Nur Aziatull Mohd-Fadzil, Siti Nabilla Mahalim, Marshall Hampton, Harry T. Horner, Elizabeth C. Chatt, and Basil J. Nikolau
- Subjects
Crops, Agricultural ,0106 biological sciences ,Regular Issue ,Plant Nectar ,Pollination ,Physiology ,Flowers ,Plant Science ,Merocrine ,Biology ,01 natural sciences ,Transcriptome ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,Botany ,Genetics ,Nectar ,030304 developmental biology ,Ecological niche ,Gossypium ,0303 health sciences ,Herbivore ,Reproductive success ,food and beverages ,Trichomes ,Biosynthetic Pathways ,chemistry ,010606 plant biology & botany - Abstract
Nectar is a primary reward mediating plant–animal mutualisms to improve plant fitness and reproductive success. Four distinct trichomatic nectaries develop in cotton (Gossypium hirsutum), one floral and three extrafloral, and the nectars they secrete serve different purposes. Floral nectar attracts bees for promoting pollination, while extrafloral nectar attracts predatory insects as a means of indirect protection from herbivores. Cotton therefore provides an ideal system for contrasting mechanisms of nectar production and nectar composition between different nectary types. Here, we report the transcriptome and ultrastructure of the four cotton nectary types throughout development and compare these with the metabolomes of secreted nectars. Integration of these datasets supports specialization among nectary types to fulfill their ecological niche, while conserving parallel coordination of the merocrine-based and eccrine-based models of nectar biosynthesis. Nectary ultrastructures indicate an abundance of rough endoplasmic reticulum positioned parallel to the cell walls and a profusion of vesicles fusing to the plasma membranes, supporting the merocrine model of nectar biosynthesis. The eccrine-based model of nectar biosynthesis is supported by global transcriptomics data, which indicate a progression from starch biosynthesis to starch degradation and sucrose biosynthesis and secretion. Moreover, our nectary global transcriptomics data provide evidence for novel metabolic processes supporting de novo biosynthesis of amino acids secreted in trace quantities in nectars. Collectively, these data demonstrate the conservation of nectar-producing models among trichomatic and extrafloral nectaries.
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- 2021
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132. Genomic Atypia to Enrich Melanoma Positivity in Biopsied Lesions: Gene Expression and Pathology Findings From a Large U.S. Registry Study
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Anh Nguyen, Michael D. Howell, Gary L. Peck, Maral K Skelsey, Laura K. Ferris, Jim Rock, Burkhard Jansen, Clay J. Cockerell, Zuxu Yao, and Brook Brouha
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medicine.medical_specialty ,PRAME ,Pathology ,medicine.diagnostic_test ,business.industry ,Melanoma ,Registry study ,Genomic signature ,medicine.disease ,Biopsy ,medicine ,Atypia ,Biomarker (medicine) ,Histopathology ,business - Abstract
Importance: Melanoma is diagnosed in approximately 200,000 people within the US each year and is responsible for more than 6,850 deaths. Currently, clinical suspicion guides biopsy decisions and melanoma is confirmed in approximately 4% of biopsied lesions. A non-invasive two-gene expression test (2-GEP) was shown to enhance the physical exam by evaluating genomic atypia to guide biopsy decisions. This study examines the corresponding histopathology of real-world 2-GEP-positive cases. Methods: Cutaneous lesions suspicious for melanoma (n=3,418) were 2-GEP tested by 90 licensed clinicians in real-world practice. 2-GEP-positive lesions (genomically atypical as indicated by the detection of LINC and/or PRAME) were biopsied in 316 out of 324 (97.5%) cases and 313 pathology reports were available for analysis. Results: Biopsied 2-GEP-positive lesions were separated into diagnostic subgroups based on corresponding pathology reports. The prevalence of melanoma in biopsies of 2-GEP-positive lesions was 18.7%. Gene expression of both LINC and PRAME was present in ever-increasing percentages of melanocytic lesions as pathology reports demonstrated increasing levels of atypia. Notably, 47.5% of the histopathologically-confirmed melanomas demonstrated this double positive genomic signature while 23.7% were single-positive for LINC and 28.8% were single-positive for PRAME. Discussion: These data show that biopsied 2-GEP-positive lesions are enriched almost five-fold for advanced histopathologic features compared to those biopsied based solely on visual assessment criteria. The close correlation between genomic atypia and atypical pathology should be considered when planning treatment of a 2-GEP-positive lesion. Consideration of genomic atypia may be a superior approach to guide biopsy decisions and manage pigmented lesions.
- Published
- 2021
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133. A Case of Granulomatous Hypersensitivity Reactions to a Dermal Filler Precipitated by PD-1 Checkpoint Inhibitor Therapy
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Parneet Dhaliwal, Sidra Ibad, Clay J. Cockerell, and Diana Losak
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medicine.medical_specialty ,Side effect ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Immunotherapy ,Dermal Fillers ,Dermatology ,Hypersensitivity reaction ,Biopsy ,medicine ,Dermatopathology ,Nivolumab ,Granulomatous Dermatitis ,business - Abstract
Injection of filler material has become routine in dermatology in improving the appearance of rhytides and increasing skin volume associated with aging. While the vast majority of injections are accomplished without complications, foreign body reactions may develop in a certain percentage of individuals. We recently encountered a 65-year-old woman with recurrent malignant melanoma who presented with marked thickening along the sides of her face for approximately 2 months. She recently received nivolumab infusions for recurrent malignant melanoma and noted that symptoms worsened after each infusion. She reported having had cosmetic procedures done three years prior, one of which was an injection of a long-lasting dermal filler, polymethylmethacrylate microsphere enhanced bovine collagen (Bellafill). A biopsy of two areas revealed nodular infiltrates of histiocytes with small round lobules recognizable as polymethylmethacrylate microspheres. Based on clinical and histopathologic findings, a diagnosis of granulomatous dermatitis filler reaction was rendered. Nivolumab is a PD-1 checkpoint inhibitor that disrupts T-cell inhibitory pathways leading to increased immune activation. In this case, the immune activation triggered a florid granulomatous reaction to the filler the patient had been injected with 3 years previously. We present this case as the second report of this phenomenon and the first in the dermatologic literature. This is a newly recognized side effect of PD-1 checkpoint immunotherapy and patients who are about to initiate such therapy who have had filler injections should be warned about this potential complication.
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- 2021
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134. Russian Spiritual Christianity and the Closing of the Black-Earth Frontier: The First Heresy Trials of the Dukhobors in the 1760s
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Clay, J. Eugene
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- 2013
135. Centers and Peripheries in Eastern Christianity: An Introduction
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Martin, Russell E., Skinner, Barbara J., and Clay, J. Eugene
- Published
- 2013
136. Androgens and COVID-19
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Kinnor Das, Anant Patil, Andy Goren, Clay J. Cockerell, and Mohamad Goldust
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Male ,SARS-CoV-2 ,Androgens ,COVID-19 ,Humans ,RNA, Viral ,Female ,Dermatology ,Retrospective Studies - Abstract
The humans have been disproportionately affected by the coronavirus disease (COVID-19) pandemic. The novel coronavirus or the severe acute respiratory syndrome coronavirus 2 (SARS-COV2) causing coronavirus disease (COVID-19) has spread across the globe. Androgens have been suggested to have a role in COVID-19 pathogenesis.The objective of this review article is to study the link between androgens and COVID-19.PubMed and Google Scholar search was performed to retrieve literature related to the topic. Review articles, clinical trials, retrospective studies, observational studies, and case-control studies were considered for the review.Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infected men are more inclined to be hospitalized for intensive care unit (ICU) as compared with women. This difference in the ICU admissions provides some clue for possible influence of androgens in the severity of COVID-19. The contribution of androgen and androgen receptor in COVID-19 disease and its severity, as well as the numerous medications targeting androgen and its receptor for lowering COVID-19 disease severity, are discussed in this review. Available literature suggests the role of androgen in the pathogenesis and severity of COVID-19. Sensitivity for androgen may be an important factor in regulating the severity of COVID-19 disease.There is a scope for the development of COVID-19 treatments based on androgen suppression. Clinical trials may furnish pivotal data and add more evidence-based options for the management of COVID-19.
- Published
- 2022
137. Primary low‐grade neuroendocrine carcinoma of the skin: An exceedingly rare entity
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Chen, Tiffany Y., Morrison, Annie O., Susa, Joe, and Cockerell, Clay J.
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- 2017
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138. Cutaneous malignancies simulating seborrheic keratoses: An underappreciated phenomenon?
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Chen, Tiffany Y., Morrison, Annie O., and Cockerell, Clay J.
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- 2017
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139. Artificial intelligence in Dermatopathology.
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Jartarkar, Shishira R., Cockerell, Clay J., Patil, Anant, Kassir, Martin, Babaei, Mahsa, Weidenthaler‐Barth, Beate, Grabbe, Stephan, and Goldust, Mohamad
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- *
ARTIFICIAL intelligence , *CONVOLUTIONAL neural networks , *DERMATOPATHOLOGY , *ONLINE databases , *IMAGE recognition (Computer vision) - Abstract
Introduction: Ever evolving research in medical field has reached an exciting stage with advent of newer technologies. With the introduction of digital microscopy, pathology has transitioned to become more digitally oriented speciality. The potential of artificial intelligence (AI) in dermatopathology is to aid the diagnosis, and it requires dermatopathologists' guidance for efficient functioning of artificial intelligence. Method: Comprehensive literature search was performed using electronic online databases "PubMed" and "Google Scholar." Articles published in English language were considered for the review. Results: Convolutional neural network, a type of deep neural network, is considered as an ideal tool in image recognition, processing, classification, and segmentation. Implementation of AI in tumor pathology is involved in the diagnosis, grading, staging, and prognostic prediction as well as in identification of genetic or pathological features. In this review, we attempt to discuss the use of AI in dermatopathology, the attitude of patients and clinicians, its challenges, limitation, and potential opportunities in future implementation. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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140. Androgens and COVID ‐19
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Das, Kinnor, primary, Patil, Anant, additional, Goren, Andy, additional, Cockerell, Clay J., additional, and Goldust, Mohamad, additional
- Published
- 2022
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141. Feasibility of Bridge Deicing Using Geothermal Energy Piles in Different U.S. Climates
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Xiao, Suguang, primary, Suleiman, Muhannad T., additional, Sudhakar, Neti, additional, Naito, Clay J., additional, and Zhang, Guozhu, additional
- Published
- 2022
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142. Experimental Cyclic Heat Stress on Intestinal Permeability, Bone Mineralization, Leukocyte Proportions and Meat Quality in Broiler Chickens
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Rocchi, Alessandro, primary, Ruff, Jared, additional, Maynard, Clay J., additional, Forga, Aaron J., additional, Señas-Cuesta, Roberto, additional, Greene, Elizabeth S., additional, Latorre, Juan D., additional, Vuong, Christine N., additional, Graham, Brittany D., additional, Hernandez-Velasco, Xochitl, additional, Tellez, Guillermo, additional, Petrone-Garcia, Victor M., additional, Laverty, Lauren, additional, Hargis, Billy M., additional, Erf, Gisela F., additional, Owens, Casey M., additional, and Tellez-Isaias, Guillermo, additional
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- 2022
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143. A Case of Cutaneous Metastatic Tonsillar Squamous Cell Carcinoma in a Female
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Heibel, Haley Danielle, primary, Bandel, Chris, additional, Reddick, Claire, additional, and Cockerell, Clay J., additional
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- 2022
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144. The Woman Clothed in the Sun: Pacifism and Apocalyptic Discourse among Russian Spiritual Christian Molokan-Jumpers
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Clay, J. Eugene
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- 2011
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145. The Involvement of hybrid cluster protein 4, HCP4, in Anaerobic Metabolism in Chlamydomonas reinhardtii.
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Adam C Olson and Clay J Carter
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Medicine ,Science - Abstract
The unicellular green algae Chlamydomonas reinhardtii has long been studied for its unique fermentation pathways and has been evaluated as a candidate organism for biofuel production. Fermentation in C. reinhardtii is facilitated by a network of three predominant pathways producing four major byproducts: formate, ethanol, acetate and hydrogen. Previous microarray studies identified many genes as being highly up-regulated during anaerobiosis. For example, hybrid cluster protein 4 (HCP4) was found to be one of the most highly up-regulated genes under anoxic conditions. Hybrid cluster proteins have long been studied for their unique spectroscopic properties, yet their biological functions remain largely unclear. To probe its role during anaerobiosis, HCP4 was silenced using artificial microRNAs (ami-hcp4) followed by extensive phenotypic analyses of cells grown under anoxic conditions. Both the expression of key fermentative enzymes and their respective metabolites were significantly altered in ami-hcp4, with nitrogen uptake from the media also being significantly different than wild-type cells. The results strongly suggest a role for HCP4 in regulating key fermentative and nitrogen utilization pathways.
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- 2016
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146. The role of alanine synthesis and nitrate‐induced nitric oxide production during hypoxia stress in Cucurbita pepo nectaries
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Rodney T. Venterea, Clay J. Carter, Rahul Roy, and Erik M. Solhaug
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0106 biological sciences ,0301 basic medicine ,Plant Nectar ,Nitrogen ,Flowers ,Plant Science ,Nitric Oxide ,Nitrate reductase ,Nitrate Reductase ,01 natural sciences ,03 medical and health sciences ,Cucurbita pepo ,chemistry.chemical_compound ,Cucurbita ,Nitrate ,Gene Expression Regulation, Plant ,Stress, Physiological ,Genetics ,Nectar ,Amino Acids ,Hypoxia ,Plant Proteins ,Alanine ,chemistry.chemical_classification ,Nitrates ,biology ,food and beverages ,Alanine Transaminase ,Nectar secretion ,Cell Biology ,Metabolism ,biology.organism_classification ,Amino acid ,030104 developmental biology ,Biochemistry ,chemistry ,Sugars ,010606 plant biology & botany - Abstract
Floral nectar is a sugary solution produced by nectaries to attract and reward pollinators. Nectar metabolites, such as sugars, are synthesized within the nectary during secretion from both pre-stored and direct phloem-derived precursors. In addition to sugars, nectars contain nitrogenous compounds such as amino acids; however, little is known about the role(s) of nitrogen (N) compounds in nectary function. In this study, we investigated N metabolism in Cucurbita pepo (squash) floral nectaries in order to understand how various N-containing compounds are produced and determine the role of N metabolism in nectar secretion. The expression and activity of key enzymes involved in primary N assimilation, including nitrate reductase (NR) and alanine aminotransferase (AlaAT), were induced during secretion in C. pepo nectaries. Alanine (Ala) accumulated to about 35% of total amino acids in nectaries and nectar during peak secretion; however, alteration of vascular nitrate supply had no impact on Ala accumulation during secretion, suggesting that nectar(y) amino acids are produced by precursors other than nitrate. In addition, nitric oxide (NO) is produced from nitrate and nitrite, at least partially by NR, in nectaries and nectar. Hypoxia-related processes are induced in nectaries during secretion, including lactic acid and ethanolic fermentation. Finally, treatments that alter nitrate supply affect levels of hypoxic metabolites, nectar volume and nectar sugar composition. The induction of N metabolism in C. pepo nectaries thus plays an important role in the synthesis and secretion of nectar sugar.
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- 2020
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147. Development and Validation of a Diagnostic 35-Gene Expression Profile Test for Ambiguous or Difficult-to-Diagnose Suspicious Pigmented Skin Lesions
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Clay J. Cockerell, Howard Martin, Brooke Russell, Sarah Estrada, Matthew S. Goldberg, Stephen Lencioni, Lauren Meldi Sholl, Olga Zolochevska, Kyle R. Covington, Michael Berg, Aaron S. Farberg, Jeffrey B. Shackelton, Natalie Depcik-Smith, Jeffrey Wilkinson, Nathan Cleaver, Pedram Gerami, and Gregory A. Hosler
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High rate ,medicine.medical_specialty ,business.industry ,Melanoma ,medicine.disease ,Test (assessment) ,Lesion ,Gene selection ,medicine ,Radiology ,Dermatopathology ,medicine.symptom ,Medical diagnosis ,Pigmented skin ,business - Abstract
Purpose: A clinical hurdle for dermatopathology is the accurate diagnosis of melanocytic neoplasms. While histopathologic assessment is frequently sufficient, high rates of diagnostic discordance are reported. The development and validation of a 35-gene expression profile (35-GEP) test that accurately differentiates benign and malignant pigmented lesions is described. Methods: Lesion samples were reviewed by at least three independent dermatopathologists and included in the study if 2/3 or 3/3 diagnoses were concordant. Diagnostic utility of 76 genes was assessed with quantitative RT-PCR; neural network modeling and cross-validation were utilized for diagnostic gene selection using 200 benign nevi and 216 melanomas for training. To reflect the complex biology of melanocytic neoplasia, the 35-GEP test was developed to include an intermediate-risk zone. Results: Validation of the 35-GEP was performed in an independent set of 273 benign and 230 malignant lesions. The test demonstrated 99.1% sensitivity, 94.3% specificity, 93.6% positive predictive value and 99.2% negative predictive value. 96.4% of cases received a differential result and 3.6% had intermediate-risk. Conclusions: The 35-GEP test was developed to refine diagnoses of melanocytic neoplasms by providing clinicians with an objective tool. A test with these accuracy metrics could alleviate uncertainty in difficult-to-diagnose lesions leading to decreased unnecessary procedures while appropriately identifying at-risk patients.
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- 2020
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148. A Postherpetic Isotopic Response Presenting as a Granuloma Annulare-Like Inflammatory Reaction
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Haley D Heibel and Clay J. Cockerell
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Tissue antigens ,business.industry ,Inflammation ,Disease ,medicine.disease ,Immune complex ,Hypersensitivity reaction ,Immune system ,Immunology ,Etiology ,Medicine ,medicine.symptom ,business ,Granuloma annulare - Abstract
Isotopic response refers to the occurrence of a new, unrelated cutaneous disease occurring at the same location of a previous healed disease. The etiology of isotopic responses is still not completely understood. Theories have included that viral particles may lead to the development of the second disease, the destruction of nerve fibers by herpes zoster may lead to an indirect influence on the immune system, an alteration of microcirculation from inflammation that causes future insults to localize to the same site, and an exaggerated and atypical hypersensitivity reaction to tissue antigens, viral antigens, or immune complex deposition. A wide variety of disease processes have been reported as the second disease in an isotopic response.Here, we discuss a case of an isotopic response following herpes zoster in which the second disease involved a granuloma annulare (GA)-like inflammatory reaction that resolved and recurred. These findings support the theory that the skin affected by herpes zoster is affected in a way that makes it a focus for the manifestation of further skin diseases.
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- 2020
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149. Growing up aspen: ontogeny and trade-offs shape growth, defence and reproduction in a foundation species
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Richard L. Lindroth, Jennifer F L Riehl, Hilary L. Barker, Nathalie D. Lackus, Kennedy F. Rubert-Nason, Clay J. Morrow, Christopher T. Cole, and Tobias G. Köllner
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Male ,Herbivore ,Genotype ,Specific leaf area ,Range (biology) ,Ecology ,Reproduction ,Ontogeny ,media_common.quotation_subject ,Original Articles ,Plant Science ,Biology ,Heritability ,Intraspecific competition ,Trees ,Plant Leaves ,Populus ,Foundation species ,Ecosystem ,media_common - Abstract
Background and AimsIntraspecific variation in foundation species of forest ecosystems can shape community and ecosystem properties, particularly when that variation has a genetic basis. Traits mediating interactions with other species are predicted by simple allocation models to follow ontogenetic patterns that are rarely studied in trees. The aim of this research was to identify the roles of genotype, ontogeny and genotypic trade-offs shaping growth, defence and reproduction in aspen.MethodsWe established a common garden replicating >500 aspen genets in Wisconsin, USA. Trees were measured through the juvenile period into the onset of reproduction, for growth, defence chemistry (phenolic glycosides and condensed tannins), nitrogen, extrafloral nectaries, leaf morphology (specific leaf area), flower production and foliar herbivory and disease. We also assayed the TOZ19 sex marker and heterozygosity at ten microsatellite loci.Key ResultsWe found high levels of genotypic variation for all traits, and high heritabilities for both the traits and their ontogenetic trajectories. Ontogeny strongly shaped intraspecific variation, and trade-offs among growth, defence and reproduction supported some predictions while contradicting others. Both direct resistance (chemical defence) and indirect defence (extrafloral nectaries) declined during the juvenile stage, prior to the onset of reproduction. Reproduction was higher in trees that were larger, male and had higher individual heterozygosity. Growth was diminished by genotypic allocation to both direct and indirect defence as well as to reproduction, but we found no evidence of trade-offs between defence and reproduction.ConclusionsKey traits affecting the ecological communities of aspen have high levels of genotypic variation and heritability, strong patterns of ontogeny and clear trade-offs among growth, defence and reproduction. The architecture of aspen’s community genetics – its ontogeny, trade-offs and especially its great variability – is shaped by both its broad range and the diverse community of associates, and in turn further fosters that diversity.
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- 2020
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150. Clinician-Dermatopathologist Communication via the Requisition Form in the Era of Electronic Medical Records: A Review of the Literature
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Clay J. Cockerell and Haley D Heibel
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medicine.medical_specialty ,Standardization ,business.industry ,Medical record ,MEDLINE ,Medicine ,Context (language use) ,Medical physics ,CINAHL ,Dermatopathology ,Requisition ,business ,Terminology - Abstract
Background: There are shortcomings in the quality and accuracy of submitted clinical information on skin biopsy requisition forms (SBRFs). Most SBRFs are completed via electronic medical records (EMR), and the effect of this on the work flow and the quality of submitted clinical information must be evaluated to identify targets in clinician-dermatopathologist communication for improvement.Objective: This review of the literature explored how SBRFs are currently handled by clinicians in the context of EMR, barriers to effective clinician-dermatopathologist communication, and suggestions for improvement.Methods: A literature search was conducted on Medline, Cinahl, and Scopus including the keywords of dermatology*, dermapatholog*, dermatopathology*, and requisition*. 20 articles were retrieved. 17 articles were included from this search and from cross-referencing articles.Results: This review reaffirmed the inadequacy of clinical information provided to dermatopathologists. Standardization of and formal education in completing SBRFs, along with dermatopathologist access to information and images via shared EMR may improve histopathologic interpretation of specimens and allow for cost-effective patient care.Limitations: This review was restricted to the English language. Previous studies have primarily been retrospective study designs and survey studies.Conclusion: The development of user-friendly standardized SBRFs with validated criteria are necessary. Clinician awareness of how to appropriately convey information and terminology on the SBRF may significantly improve the work flow of both clinicians and dermatopathologists and patient outcomes.
- Published
- 2020
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