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101. List of contributors

Author

Akiyoshi, Takashi, primary, Beets-Tan, Regina, additional, Benson, Sean, additional, Bodalal, Zuhir, additional, Brouwer, Nelleke Pietronella Maria, additional, Burggraaf, Jacobus, additional, Cai, Lishan, additional, Ceelen, Wim P., additional, Chang, Daniel T., additional, De Clercq, Alexander, additional, Debbaut, Charlotte, additional, Delgado, Carlos Alejandro Silvera, additional, Elias, Alexandra, additional, Francke, Kai, additional, Frick, Melissa A., additional, Galema, Hidde A., additional, Hans, Dedecker, additional, Hans, Prenen, additional, Hardiman, Karin, additional, Hazen, Sanne-Marije J.A., additional, Hilling, Denise E., additional, Hoorens, Anne, additional, Hutteman, Merlijn, additional, Ikeda, Masataka, additional, Ito, Masaaki, additional, Jan, Albert, additional, Kanemitsu, Yukihide, additional, Kataoka, Kozo, additional, Keereweer, Stijn, additional, Koudehi, Ghazal Adeli, additional, Kusters, Miranda, additional, Laura, Wuyts, additional, Laure-Anne, Teuwen, additional, Lauwerends, Lorraine J., additional, Loo, Phoebe, additional, Maas, Monique, additional, Marc, Peeters, additional, Meijer, Ruben P.J., additional, Monson, John R.T., additional, Nagtegaal, Iris D., additional, Pollom, Erqi L., additional, Rey, Sergio, additional, Salavati, Hooman, additional, Schito, Luana, additional, Segers, Patrick, additional, Shiozawa, Manabu, additional, Sluckin, Tania C., additional, Smithson, Mary, additional, Struys, Mathieu J.R., additional, Tiernan, Jim P., additional, Tije, ten, additional, Timon, Vandamme, additional, Trebeschi, Stefano, additional, Tsukada, Yuichiro, additional, Vahrmeijer, Alexander L., additional, van Ramshorst, Gabrielle H., additional, Verhoef, Cornelis, additional, Vitzthum, Lucas K., additional, Waktola, Selam, additional, West, Nicholas P., additional, Westwood, Alice C., additional, Willaert, Wouter, additional, and Wright, Jesse P., additional

Published
2022
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102. NCCN Guidelines Insights: Hepatobiliary Cancers, Version 1.2017.

Author

Benson, Al B, D'Angelica, Michael I, Abbott, Daniel E, Abrams, Thomas A, Alberts, Steven R, Saenz, Daniel Anaya, Are, Chandrakanth, Brown, Daniel B, Chang, Daniel T, Covey, Anne M, Hawkins, William, Iyer, Renuka, Jacob, Rojymon, Karachristos, Andrea, Kelley, R Kate, Kim, Robin, Palta, Manisha, Park, James O, Sahai, Vaibhav, Schefter, Tracey, Schmidt, Carl, Sicklick, Jason K, Singh, Gagandeep, Sohal, Davendra, Stein, Stacey, Tian, G Gary, Vauthey, Jean-Nicolas, Venook, Alan P, Zhu, Andrew X, Hoffmann, Karin G, and Darlow, Susan

Subjects
Biomedical and Clinical Sciences, Oncology and Carcinogenesis, Digestive Diseases, Cancer, Rare Diseases, Liver Disease, Orphan Drug, Good Health and Well Being, Carcinoma, Hepatocellular, Humans, Liver Neoplasms, United States, Oncology & Carcinogenesis, Oncology and carcinogenesis, Health services and systems
Abstract

The NCCN Guidelines for Hepatobiliary Cancers provide treatment recommendations for cancers of the liver, gallbladder, and bile ducts. The NCCN Hepatobiliary Cancers Panel meets at least annually to review comments from reviewers within their institutions, examine relevant new data from publications and abstracts, and reevaluate and update their recommendations. These NCCN Guidelines Insights summarize the panel's discussion and most recent recommendations regarding locoregional therapy for treatment of patients with hepatocellular carcinoma.

Published
2017

104. Radiation Therapy for Rectal Cancer: Executive Summary of an ASTRO Clinical Practice Guideline

Author

Wo, Jennifer Y., Anker, Christopher J., Ashman, Jonathan B., Bhadkamkar, Nishin A., Bradfield, Lisa, Chang, Daniel T., Dorth, Jennifer, Garcia-Aguilar, Julio, Goff, David, Jacqmin, Dustin, Kelly, Patrick, Newman, Neil B., Olsen, Jeffrey, Raldow, Ann C., Ruiz-Garcia, Erika, Stitzenberg, Karyn B., Thomas, Charles R., Jr., Wu, Q. Jackie, and Das, Prajnan

Published
2021
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105. Hypergraph: A Unified and Uniform Definition with Application to Chemical Hypergraph

Author

Chang, Daniel T. and Chang, Daniel T.

Abstract

The conventional definition of hypergraph has two major issues: (1) there is not a standard definition of directed hypergraph and (2) there is not a formal definition of nested hypergraph. To resolve these issues, we propose a new definition of hypergraph that unifies the concepts of undirected, directed and nested hypergraphs, and that is uniform in using hyperedge as a single construct for representing high-order correlations among things, i.e., nodes and hyperedges. Specifically, we define a hyperedge to be a simple hyperedge, a nesting hyperedge, or a directed hyperedge. With this new definition, a hypergraph is nested if it has nesting hyperedge(s), and is directed if it has directed hyperedge(s). Otherwise, a hypergraph is a simple hypergraph. The uniformity and power of this new definition, with visualization, should facilitate the use of hypergraph for representing (hierarchical) high-order correlations in general and chemical systems in particular. Graph has been widely used as a mathematical structure for machine learning on molecular structures and 3D molecular geometries. However, graph has a major limitation: it can represent only pairwise correlations between nodes. Hypergraph extends graph with high-order correlations among nodes. This extension is significant or essential for machine learning on chemical systems. For molecules, this is significant as it allows the direct, explicit representation of multicenter bonds and molecular substructures. For chemical reactions, this is essential since most chemical reactions involve multiple participants. We propose the use of chemical hypergraph, a multilevel hypergraph with simple, nesting and directed hyperedges, as a single mathematical structure for representing chemical systems. We apply the new definition of hypergraph to chemical hypergraph and, as simplified versions, molecular hypergraph and chemical reaction hypergraph., Comment: arXiv admin note: text overlap with arXiv:2310.03623 by other authors

Published
2024

108. Advancing clinical trial equity through integration of telehealth and decentralized treatment.

Author

Brown, Eleanor, Fisher, George Albert, Shelton, Andrew, Chang, Daniel T, and Pollom, Erqi

Subjects
CLINICAL trials, TELEMEDICINE, EXPERIMENTAL design, MEDICAL research, RETROSPECTIVE studies
Abstract

Innovative strategies to increase clinical trial accessibility and equity are needed. We conducted a retrospective review of a phase II investigator-initiated trial to determine whether the modification of clinical trial design to decentralize study treatment can improve trial accessibility among underrepresented groups. Sociodemographic characteristics, including area deprivation indices, as well as study site travel distance, time, and costs were compared between enrolled participants who received chemotherapy locally and participants who did not. Participants who received chemotherapy locally lived substantially farther from the study site (median = 95.90 vs 25.20 miles, P  = .004), faced a greater time burden traveling to the study site (median = 115.00 vs 34.00 minutes, P  = .002), and had higher travel-related costs for a single trip to the study site (median = $62.81 vs $16.51, P  = .004). This study highlights opportunities for alleviating financial and time burdens associated with clinical trial participation, promoting equity in clinical research. Trial Registration: ClinicalTrials.gov identifier: NCT04380337. [ABSTRACT FROM AUTHOR]

Published
2024
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113. Australasian Gastrointestinal Trials Group (AGITG) and Trans-Tasman Radiation Oncology Group (TROG) Guidelines for Pancreatic Stereotactic Body Radiation Therapy (SBRT)

Author

Oar, Andrew, Lee, Mark, Le, Hien, Hruby, George, Dalfsen, Raymond, Pryor, David, Lee, Dominique, Chu, Julie, Holloway, Lois, Briggs, Adam, Barbour, Andrew, Chander, Sarat, Ng, Sweet Ping, Samra, Jas, Shakeshaft, John, Goldstein, David, Nguyen, Nam, Goodman, Karyn A., Chang, Daniel T., and Kneebone, Andrew

Published
2020
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116. Abstract A005: A multi-institutional randomized phase III trial of chemotherapy alone versus chemotherapy and ablative 5-fraction MRI-guided adaptive radiation therapy for locally advanced pancreatic cancer (LAP-ABLATE)

Author

Chuong, Michael D., primary, Frakes, Jessica M., additional, Mittauer, Kathryn E., additional, Good, James, additional, Kim, Josh, additional, Chang, Daniel, additional, Kim, Dae Won, additional, Corradini, Stefanie, additional, Boldrini, Luca, additional, Malafa, Mokenge, additional, and O'Reilly, Eileen, additional

Published
2024
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117. Abstract A035: Stromal composition, fibroblast heterogeneity and spatial organization in pancreatic adenocarcinoma

Author

Elganainy, Dalia, primary, Costa, Andressa Dias, additional, Jordan, Alexander, additional, Kim, Suryun, additional, Väyrynen, Sara A., additional, Williams, Hannah L., additional, Yuan, Chen, additional, Rubinson, Douglas A., additional, Perez, Kimberly, additional, Singh, Harshabad, additional, Dunne, Richard F., additional, Clancy, Thomas E., additional, Linehan, David C., additional, Chang, Daniel T., additional, Hezel, Aram F., additional, Koong, Albert C., additional, Aguirre, Andrew, additional, Wolpin, Brian M., additional, and Nowak, Jonathan A., additional

Published
2024
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118. BIOGUIDE-X: A First-in-Human Study of the Performance of Positron Emission Tomography-Guided Radiotherapy

Author

Vitzthum, Lucas K, primary, Surucu, Murat, additional, Gensheimer, Michael F., additional, Kovalchuk, Nataliya, additional, Han, Bin, additional, Pham, Daniel, additional, Chang, Daniel, additional, Shirvani, Shervin M., additional, Aksoy, Didem, additional, Maniyedath, Arjun, additional, Narayanan, Manoj, additional, Da Silva, Angela J., additional, Mazin, Samuel, additional, Feghali, Karine A. Al, additional, Iyengar, Puneeth, additional, Dan, Tu, additional, Pompos, Arnold, additional, Timmerman, Robert, additional, Öz, Orhan, additional, Cai, Bin, additional, and Garant, Aurelie, additional

Published
2023
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124. Host–parasite interaction associated with major mental illness

Author

Kano, Shin-ichi, Hodgkinson, Colin A., Jones-Brando, Lorraine, Eastwood, Sharon, Ishizuka, Koko, Niwa, Minae, Choi, Eric Y., Chang, Daniel J., Chen, Yian, Velivela, Swetha D., Leister, Flora, Wood, Joel, Chowdari, Kodavali, Ducci, Francesca, Caycedo, Daniel A., Heinz, Elizabeth, Newman, Emily R., Cascella, Nicola, Mortensen, Preben B., Zandi, Peter P., Dickerson, Faith, Nimgaonkar, Vishwajit, Goldman, David, Harrison, Paul J., Yolken, Robert H., and Sawa, Akira

Published
2020
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125. The Pan-STARRS Moving Object Processing System

Author

Denneau, Larry, Jedicke, Robert, Grav, Tommy, Granvik, Mikael, Kubica, Jeremy, Milani, Andrea, Veres, Peter, Wainscoat, Richard, Chang, Daniel, Pierfederici, Francesco, Kaiser, N., Chambers, K. C., Heasley, J. N., Magnier, Eugene. A., Price, P. A., Myers, Jonathan, Kleyna, Jan, Hsieh, Henry, Farnocchia, Davide, Waters, Chris, Sweeney, W. H., Green, Denver, Bolin, Bryce, Burgett, W. S., Morgan, J. S., Tonry, John L., Hodapp, K. W., Chastel, Serge, Chesley, Steve, Fitzsimmons, Alan, Holman, Matthew, Spahr, Tim, Tholen, David, Williams, Gareth V., Abe, Shinsuke, Armstrong, J. D., Bressi, Terry H., Holmes, Robert, Lister, Tim, McMillan, Robert S., Micheli, Marco, Ryan, Eileen V., Ryan, William H., and Scotti, James V.

Subjects
Astrophysics - Instrumentation and Methods for Astrophysics, Astrophysics - Earth and Planetary Astrophysics
Abstract

We describe the Pan-STARRS Moving Object Processing System (MOPS), a modern software package that produces automatic asteroid discoveries and identifications from catalogs of transient detections from next-generation astronomical survey telescopes. MOPS achieves > 99.5% efficiency in producing orbits from a synthetic but realistic population of asteroids whose measurements were simulated for a Pan-STARRS4-class telescope. Additionally, using a non-physical grid population, we demonstrate that MOPS can detect populations of currently unknown objects such as interstellar asteroids. MOPS has been adapted successfully to the prototype Pan-STARRS1 telescope despite differences in expected false detection rates, fill-factor loss and relatively sparse observing cadence compared to a hypothetical Pan-STARRS4 telescope and survey. MOPS remains >99.5% efficient at detecting objects on a single night but drops to 80% efficiency at producing orbits for objects detected on multiple nights. This loss is primarily due to configurable MOPS processing limits that are not yet tuned for the Pan-STARRS1 mission. The core MOPS software package is the product of more than 15 person-years of software development and incorporates countless additional years of effort in third-party software to perform lower-level functions such as spatial searching or orbit determination. We describe the high-level design of MOPS and essential subcomponents, the suitability of MOPS for other survey programs, and suggest a road map for future MOPS development., Comment: 57 Pages, 26 Figures, 13 Tables

Published
2013
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127. Dosimetry and Physics Quality Assurance

Author

Kovalchuk, Nataliya, Niedermayr, Thomas R., Russo, Suzanne, Chang, Daniel T., Lee, Nancy Y., Series editor, Lu, Jiade J., Series editor, Russo, Suzanne, editor, Hoffe, Sarah, editor, and Kim, Edward, editor

Published
2018
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129. Deep 3D Dose Analysis for Prediction of Outcomes After Liver Stereotactic Body Radiation Therapy

Author

Ibragimov, Bulat, Toesca, Diego A. S., Yuan, Yixuan, Koong, Albert C., Chang, Daniel T., Xing, Lei, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Weikum, Gerhard, Series Editor, Frangi, Alejandro F., editor, Schnabel, Julia A., editor, Davatzikos, Christos, editor, Alberola-López, Carlos, editor, and Fichtinger, Gabor, editor

Published
2018
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131. Academic Dishonesty in a Post-Secondary Multilingual Institution

Author

Chang, Daniel

Abstract

While plagiarism is a continuing educational writing issue in many post-secondary institutions, instances of contract cheating are also rising. Plagiarism is usually conceptualized as a type of writing misconduct or violation of existing institutional academic standards, but very little attention has been paid to contract cheating--when students seek paid tutors to write their course assignments. The present paper focuses on one multilingual undergraduate student's contract cheating experience, demonstrating her views on academic dishonesty and help seeking, and how she witnessed her multilingual peers engaging in contract cheating activities. Findings reveal that the participant's learning might be driven by her attempts to maintain her academic status. Her participation in several paid tutorial services might be due to her bringing her own cultural values to post-secondary learning and trying to maximize her GPA as well as fulfil the learning needs of the courses she was taking. Important implications related to the present research encourage educators to revisit multilingual students' learning needs related to academic misconduct and academic integrity in post-secondary education.

Published
2018

137. Platinum-based chemotherapy attenuates the effector response of CD8 T cells to concomitant PD-1 blockade

Author

Mariniello, Annapaola, primary, Nasti, Tahseen H., additional, Chang, Daniel Y., additional, Hashimoto, Masao, additional, Malik, Sakshi, additional, McManus, Daniel, additional, Lee, Judong, additional, McGuire, Donald, additional, Cardenas, Maria A., additional, Umana, Pablo, additional, Nicolini, Valeria, additional, Antia, Rustom, additional, Saha, Ananya, additional, Buchwald, Zachary, additional, Kissick, Haydn, additional, Ghorani, Ehsan, additional, Novello, Silvia, additional, Sangiolo, Dario, additional, Scagliotti, Giorgio V., additional, Ramalingam, Suresh S., additional, and Ahmed, Rafi, additional

Published
2023
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139. Consequences of a telomerase-related fitness defect and chromosome substitution technology in yeast synIX strains

Author

McCulloch, Laura H., primary, Sambasivam, Vijayan, additional, Hughes, Amanda L., additional, Annaluru, Narayana, additional, Ramalingam, Sivaprakash, additional, Fanfani, Viola, additional, Lobzaev, Evgenii, additional, Mitchell, Leslie A., additional, Cai, Jitong, additional, Jiang, Hua, additional, LaCava, John, additional, Taylor, Martin S., additional, Bishai, William R., additional, Stracquadanio, Giovanni, additional, Steinmetz, Lars M., additional, Bader, Joel S., additional, Zhang, Weimin, additional, Boeke, Jef D., additional, Chandrasegaran, Srinivasan, additional, Anderson, Breeana G., additional, Apaw, Abena, additional, Bohutskyi, Pavlo, additional, Buchanan, Erin, additional, Chang, Daniel, additional, Chen, Melinda, additional, Cooper, Eric, additional, Deliere, Amanda, additional, Drakos, Kallie, additional, Dubin, Justin, additional, Fernandez, Christopher, additional, Guo, Zheyuan, additional, Harrelson, Thomas, additional, Lee, Dongwon, additional, McDade, Jessica, additional, Melamed, Scott, additional, Müller, Héloise, additional, Murali, Adithya, additional, Niño Rivera, José U., additional, Patel, Mira, additional, Rodley, Mary, additional, Schwarz, Jenna, additional, Shelat, Nirav, additional, Sims, Josh S., additional, Steinberg, Barrett, additional, Steinhardt, James, additional, Trivedi, Rishi K., additional, Von Dollen, Christopher, additional, Wang, Tianyi, additional, Wong, Remus, additional, Xu, Yijie, additional, Young, Noah, additional, Zeller, Karen, additional, and Zhang, Allen, additional

Published
2023
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140. Individualized Stereotactic Ablative Radiotherapy for Lung Tumors

Author

Gensheimer, Michael F., primary, Gee, Harriet, additional, Shirato, Hiroki, additional, Taguchi, Hiroshi, additional, Snyder, John M., additional, Chin, Alexander L., additional, Vitzthum, Lucas K., additional, Maxim, Peter G., additional, Wakelee, Heather A., additional, Neal, Joel, additional, Das, Millie, additional, Chang, Daniel T., additional, Kidd, Elizabeth, additional, Hancock, Steven L., additional, Shultz, David B., additional, Horst, Kathleen C., additional, Le, Quynh-Thu, additional, Wong, Samantha, additional, Brown, Eleanor, additional, Nguyen, Ngan, additional, Liang, Rachel, additional, Loo, Billy W., additional, and Diehn, Maximilian, additional

Published
2023
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142. ASO Visual Abstract: Patterns of Recurrence after Poor Response to Neoadjuvant Chemotherapy in Gastric Cancer and the Role for Adjuvant Radiation

Author

Hui, Caressa, primary, Ewongwo, Agnes, additional, Lau, Brianna, additional, Fisher, George, additional, Delitto, Daniel, additional, Poultsides, George, additional, Ho, Quoc-Anh, additional, Rahimy, Elham, additional, Pollom, Erqi, additional, Chang, Daniel T., additional, and Vitzthum, Lucas K., additional

Published
2023
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144. Gut Microbiome Wellness Index 2 for Enhanced Health Status Prediction from Gut Microbiome Taxonomic Profiles

Author

Chang, Daniel, primary, Gupta, Vinod K., additional, Hur, Benjamin, additional, Cobo-López, Sergio, additional, Cunningham, Kevin Y., additional, Han, Nam Soo, additional, Lee, Insuk, additional, Kronzer, Vanessa L., additional, Teigen, Levi M., additional, Karnatovskaia, Lioudmila V., additional, Longbrake, Erin E., additional, Davis, John M., additional, Nelson, Heidi, additional, and Sung, Jaeyun, additional

Published
2023
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147. Outcomes up to age 36 months after congenital Zika virus infection—U.S. states

Author

Neelam, Varsha, primary, Woodworth, Kate R., additional, Chang, Daniel J., additional, Roth, Nicole M., additional, Reynolds, Megan R., additional, Akosa, Amanda, additional, Carr, Christopher P., additional, Anderson, Kayla N., additional, Mulkey, Sarah B., additional, DeBiasi, Roberta L., additional, Biddle, Cara, additional, Lee, Ellen H., additional, Elmore, Amanda L., additional, Scotland, Sarah J., additional, Sowunmi, Similoluwa, additional, Longcore, Nicole D., additional, Ahmed, Muhammad, additional, Langlois, Peter H., additional, Khuwaja, Salma, additional, Browne, Shea Elizabeth, additional, Lind, Leah, additional, Shim, Kyoo, additional, Gosciminski, Michael, additional, Blumenfeld, Rachel, additional, Khuntia, Shreya, additional, Halai, Umme-Aiman, additional, Locklear, Autumn, additional, Chan, Mary, additional, Willabus, Teri’, additional, Tonzel, Julius, additional, Marzec, Natalie S., additional, Barreto, Nianest Alers, additional, Sanchez, Connie, additional, Fornoff, Jane, additional, Hale, Shelby, additional, Nance, Amy, additional, Iguchi, Lisa, additional, Adibhatla, Sowmya N., additional, Potts, Emily, additional, Schiffman, Elizabeth, additional, Raman, Devin, additional, McDonald, Morgan F., additional, Stricklin, Brandi, additional, Ludwig, Elizabeth, additional, Denson, Lindsay, additional, Contreras, Dianna, additional, Romitti, Paul A., additional, Ferrell, Emily, additional, Marx, Meghan, additional, Signs, Kimberly, additional, Cook, Amie, additional, Leedom, Vinita Oberoi, additional, Beauregard, Suzann, additional, Orantes, Lucia C., additional, Cronquist, Laura, additional, Roush, Lesley, additional, Godfred-Cato, Shana, additional, Gilboa, Suzanne M., additional, Meaney-Delman, Dana, additional, Honein, Margaret A., additional, Moore, Cynthia A., additional, and Tong, Van T., additional

Published
2023
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