31,921 results on '"Biagio, A"'
Search Results
102. Explainable AI in drug discovery: self-interpretable graph neural network for molecular property prediction using concept whitening
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Proietti, Michela, Ragno, Alessio, Rosa, Biagio La, Ragno, Rino, and Capobianco, Roberto
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- 2024
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103. Sparse and smooth functional data clustering
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Centofanti, Fabio, Lepore, Antonio, and Palumbo, Biagio
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- 2024
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104. Parkinson’s disease motor progression in relation to the timing of REM sleep behavior disorder presentation: an exploratory retrospective study
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Bovenzi, Roberta, Pierantozzi, Mariangela, Conti, Matteo, Carignani, Silvia, Fernandes, Mariana, Schirinzi, Tommaso, Cerroni, Rocco, Mercuri, Nicola Biagio, Stefani, Alessandro, and Liguori, Claudio
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- 2024
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105. A property of strictly convex functions which differ from each other by a constant on the boundary of their domain
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Ricceri, Biagio
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Mathematics - Functional Analysis ,Mathematics - Optimization and Control - Abstract
In this paper, in particular, we prove the following result: Let $E$ be a reflexive real Banach space and let $C\subset E$ be a closed convex set, with non-empty interior, whose boundary is sequentially weakly closed and non-convex. Then, for every function $\varphi:\partial C\to {\bf R}$ and for every convex set $S\subseteq E^*$ dense in $E^*$, there exists $\tilde\gamma\in S$ having the following property: for every strictly convex lower semicontinuous function $J:C\to {\bf R}$, G\^ateaux differentiable in $\hbox {int}(C)$, such that $J_{|\partial C}-\varphi$ is constant in $\partial C$ and $\lim_{\|x\|\to +\infty}{{J(x)}\over {\|x\|}}=+\infty$ if $C$ is unbounded, $\tilde\gamma$ is an algebraically interior point of $J'(\hbox {int}(C))$ (with respect to $E^*$).
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- 2023
106. Existence, uniqueness, localization and minimization property of positive solutions for non-local problems involving discontinuous Kirchhoff functions
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Ricceri, Biagio
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Mathematics - Analysis of PDEs - Abstract
Let $\Omega\subset {\bf R}^n$ be a smooth bounded domain. In this paper, we prove a result of which the following is a by-product: Let $q\in ]0,1[$, $\alpha\in L^{\infty}(\Omega)$, with $\alpha>0$, and $k\in {\bf N}$. Then, the problem $$\cases {-\tan\left(\int_{\Omega}|\nabla u(x)|^2dx\right)\Delta u= \alpha(x)u^q & in $\Omega$\cr & \cr u>0 & in $\Omega$\cr & \cr u=0 & on $\partial \Omega$ \cr & \cr (k-1)\pi<\int_{\Omega}|\nabla u(x)|^2dx<(k-1)\pi+{{\pi}\over {2}} \cr}$$ has a unique weak solution $\tilde u$ which is the unique global minimum in $H^1_0(\Omega)$ of the functional $$u\to {{1}\over {2}}\tan\left (\int_{\Omega}|\nabla\tilde u(x)|^2dx\right)\int_{\Omega}|\nabla u(x)|^2dx-{{1}\over {q+1}}\int_{\Omega}\alpha(x)|u^+(x)|^{q+1}dx\ ,$$ where $u^+=\max\{0,u\}$.
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- 2023
107. First-order phase transitions in Yang-Mills theories and the density of state method
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Lucini, Biagio, Mason, David, Piai, Maurizio, Rinaldi, Enrico, and Vadacchino, Davide
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High Energy Physics - Lattice ,Astrophysics - Cosmology and Nongalactic Astrophysics ,General Relativity and Quantum Cosmology ,High Energy Physics - Phenomenology ,High Energy Physics - Theory - Abstract
When studied at finite temperature, Yang-Mills theories in $3+1$ dimensions display the presence of confinement/deconfinement phase transitions, which are known to be of first order -- the $SU(2)$ gauge theory being the exception. Theoretical as well as phenomenological considerations indicate that it is essential to establish a precise characterisation of these physical systems in proximity of such phase transitions. We present and test a new method to study the critical region of parameter space in non-Abelian quantum field theories on the lattice, based upon the Logarithmic Linear Relaxation (LLR) algorithm. We apply this method to the $SU(3)$ Yang Mills lattice gauge theory, and perform extensive calculations with one fixed choice of lattice size. We identify the critical temperature, and measure interesting physical quantities near the transition. Among them, we determine the free energy of the model in the critical region, exposing for the first time its multi-valued nature with a numerical calculation from first principles, providing this novel evidence in support of a first order phase transition. This study sets the stage for future high precision measurements, by demonstrating the potential of the method., Comment: 25 pages, 21 figures. Version accepted for publication
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- 2023
108. On the consistency of relative facts
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Cavalcanti, Eric G., Di Biagio, Andrea, and Rovelli, Carlo
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Quantum Physics - Abstract
Lawrence et al. have presented an argument purporting to show that "relative facts do not exist" and, consequently, "Relational Quantum Mechanics is incompatible with quantum mechanics". The argument is based on a GHZ-like contradiction between constraints satisfied by measurement outcomes in an extended Wigner's friend scenario. Here we present a strengthened version of the argument, and show why, contrary to the claim by Lawrence et al., these arguments do not contradict the consistency of a theory of relative facts. Rather, considering this argument helps clarify how one should not think about a theory of relative facts, like RQM., Comment: 4 pages
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- 2023
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109. Relativistic locality can imply subsystem locality
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Di Biagio, Andrea, Howl, Richard, Brukner, Časlav, Rovelli, Carlo, and Christodoulou, Marios
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Quantum Physics - Abstract
Locality is a central notion in modern physics, but different disciplines understand it in different ways. Quantum field theory focusses on relativistic locality, enforced by microcausality, while quantum information theory focuses on subsystem locality, which regulates how information and causal influences propagate in a system, with no direct reference to spacetime notions. Here we investigate how microcausality and subsystem locality are related. The question is relevant for understanding whether it is possible to formulate quantum field theory in quantum information language, and has bearing on the recent discussions on low-energy tests of quantum gravity. We present a first result in this direction: in the quantum dynamics of a massive scalar quantum field coupled to two localised systems, microcausality implies subsystem locality in a physically relevant approximation., Comment: 5 pages + 7 supplementary
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- 2023
110. Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach
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Palermo, Gianluca, Accordi, Gianmarco, Gadioli, Davide, Vitali, Emanuele, Silvano, Cristina, Guindani, Bruno, Ardagna, Danilo, Beccari, Andrea R., Bonanni, Domenico, Talarico, Carmine, Lunghini, Filippo, Martinovic, Jan, Silva, Paulo, Bohm, Ada, Beranek, Jakub, Krenek, Jan, Jansik, Branislav, Crisci, Luigi, Biagio, Cosenza, Thoman, Peter, Salzmann, Philip, Fahringer, Thomas, Alexander, Leila, Tauriello, Gerardo, Schwede, Torsten, Durairaj, Janani, Emerson, Andrew, Ficarelli, Federico, Wingbermuhle, Sebastian, Lindahl, Eric, Gregori, Daniele, Sana, Emanuele, Coletti, Silvano, and Gschwandtner, Philip
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Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
Today digital revolution is having a dramatic impact on the pharmaceutical industry and the entire healthcare system. The implementation of machine learning, extreme-scale computer simulations, and big data analytics in the drug design and development process offers an excellent opportunity to lower the risk of investment and reduce the time to the patient. Within the LIGATE project, we aim to integrate, extend, and co-design best-in-class European components to design Computer-Aided Drug Design (CADD) solutions exploiting today's high-end supercomputers and tomorrow's Exascale resources, fostering European competitiveness in the field. The proposed LIGATE solution is a fully integrated workflow that enables to deliver the result of a virtual screening campaign for drug discovery with the highest speed along with the highest accuracy. The full automation of the solution and the possibility to run it on multiple supercomputing centers at once permit to run an extreme scale in silico drug discovery campaign in few days to respond promptly for example to a worldwide pandemic crisis., Comment: Paper Accepted to the 20th ACM International Conference on Computing Frontiers (CF'23)
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- 2023
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111. Singlets in gauge theories with fundamental matter
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Bennett, Ed, Hsiao, Ho, Lee, Jong-Wan, Lucini, Biagio, Maas, Axel, Piai, Maurizio, and Zierler, Fabian
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High Energy Physics - Lattice ,High Energy Physics - Phenomenology - Abstract
We provide the first determination of the mass of the lightest flavor-singlet pseudoscalar and scalar bound states (mesons), in the $\rm{Sp}(4)$ Yang-Mills theory coupled to two flavors of fundamental fermions, using lattice methods. This theory has applications both to composite Higgs and strongly-interacting dark matter scenarios. We find the singlets to have masses comparable to those of the light flavored states, which might have important implications for phenomenological models. We focus on regions of parameter space corresponding to a moderately heavy mass regime for the fermions. We compare the spectra we computed to existing and new results for $\rm{SU}(2)$ and $\rm{SU}(3)$ theories, uncovering an intriguing degree of commonality. As a by-product, in order to perform the aforementioned measurements, we implemented and tested, in the context of symplectic lattice gauge theories, several strategies for the treatment of disconnected-diagram contributions to two-point correlation functions. These technical advances set the stage for future studies of the singlet sector in broader portions of parameter space of this and other lattice theories with a symplectic gauge group., Comment: 26 pages, 7 figures, 6 tables; v2: added references to data and workflow release, minor changes
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- 2023
112. $Sp(2N)$ Lattice Gauge Theories and Extensions of the Standard Model of Particle Physics
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Bennett, Ed, Holligan, Jack, Hong, Deog Ki, Hsiao, Ho, Lee, Jong-Wan, Lin, C. -J. David, Lucini, Biagio, Mesiti, Michele, Piai, Maurizio, and Vadacchino, Davide
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High Energy Physics - Lattice ,High Energy Physics - Phenomenology ,High Energy Physics - Theory - Abstract
We review the current status of the long-term programme of numerical investigation of $Sp(2N)$ gauge theories with and without fermionic matter content. We start by introducing the phenomenological as well as theoretical motivations for this research programme, which are related to composite Higgs models, models of partial top compositeness, dark matter models, and in general to the physics of strongly coupled theories and their approach to the large-N limit. We summarise the results of lattice studies conducted so far in the $Sp(2N)$ Yang-Mills theories, measuring the string tension, the mass spectrum of glueballs and the topological susceptibility, and discuss their large-N extrapolation. We then focus our discussion on $Sp(4)$, and summarise numerical measurements of mass and decay constant of mesons in the theories with fermion matter in either the fundamental or the antisymmetric representation, first in the quenched approximation, and then with dynamical fermions. We finally discuss the case of dynamical fermions in mixed representations, and exotic composite fermion states such as the chimera baryons. We conclude by sketching the future stages of the programme. And we describe our approach to open access., Comment: 75 pages, 22 figures, 3 tables; contribution to the special issue of Universe "Numerical Studies of Strongly Coupled Gauge Theories (SCGTs) in the Search of New Physics"; version accepted for publication
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- 2023
113. OCELOT: Overlapped Cell on Tissue Dataset for Histopathology
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Ryu, Jeongun, Puche, Aaron Valero, Shin, JaeWoong, Park, Seonwook, Brattoli, Biagio, Lee, Jinhee, Jung, Wonkyung, Cho, Soo Ick, Paeng, Kyunghyun, Ock, Chan-Young, Yoo, Donggeun, and Pereira, Sérgio
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Cell detection is a fundamental task in computational pathology that can be used for extracting high-level medical information from whole-slide images. For accurate cell detection, pathologists often zoom out to understand the tissue-level structures and zoom in to classify cells based on their morphology and the surrounding context. However, there is a lack of efforts to reflect such behaviors by pathologists in the cell detection models, mainly due to the lack of datasets containing both cell and tissue annotations with overlapping regions. To overcome this limitation, we propose and publicly release OCELOT, a dataset purposely dedicated to the study of cell-tissue relationships for cell detection in histopathology. OCELOT provides overlapping cell and tissue annotations on images acquired from multiple organs. Within this setting, we also propose multi-task learning approaches that benefit from learning both cell and tissue tasks simultaneously. When compared against a model trained only for the cell detection task, our proposed approaches improve cell detection performance on 3 datasets: proposed OCELOT, public TIGER, and internal CARP datasets. On the OCELOT test set in particular, we show up to 6.79 improvement in F1-score. We believe the contributions of this paper, including the release of the OCELOT dataset at https://lunit-io.github.io/research/publications/ocelot are a crucial starting point toward the important research direction of incorporating cell-tissue relationships in computation pathology., Comment: Accepted for publication at CVPR'23
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- 2023
114. Improving computation efficiency using input and architecture features for a virtual screening application
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Accordi, Gianmarco, Vitali, Emanuele, Gadioli, Davide, Crisci, Luigi, Cosenza, Biagio, Bisson, Mauro, Fatica, Massimiliano, Beccari, Andrea, and Palermo, Gianluca
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Computer Science - Computational Engineering, Finance, and Science ,Computer Science - Hardware Architecture ,Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
Virtual screening is an early stage of the drug discovery process that selects the most promising candidates. In the urgent computing scenario it is critical to find a solution in a short time frame. In this paper, we focus on a real-world virtual screening application to evaluate out-of-kernel optimizations, that consider input and architecture features to improve the computation efficiency on GPU. Experiment results on a modern supercomputer node show that we can almost double the performance. Moreover, we implemented the optimization using SYCL and it provides a consistent benefit with the CUDA optimization. A virtual screening campaign can use this gain in performance to increase the number of evaluated candidates, improving the probability of finding a drug.
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- 2023
115. RAS-ON inhibition overcomes clinical resistance to KRAS G12C-OFF covalent blockade
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Marie-Julie Nokin, Alessia Mira, Enrico Patrucco, Biagio Ricciuti, Sophie Cousin, Isabelle Soubeyran, Sonia San José, Serena Peirone, Livia Caizzi, Sandra Vietti Michelina, Aurelien Bourdon, Xinan Wang, Daniel Alvarez-Villanueva, María Martínez-Iniesta, August Vidal, Telmo Rodrigues, Carmen García-Macías, Mark M. Awad, Ernest Nadal, Alberto Villanueva, Antoine Italiano, Matteo Cereda, David Santamaría, and Chiara Ambrogio
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Science - Abstract
Abstract Selective KRASG12C inhibitors have been developed to covalently lock the oncogene in the inactive GDP-bound state. Two of these molecules, sotorasib and adagrasib, are approved for the treatment of adult patients with KRASG12C-mutated previously treated advanced non-small cell lung cancer. Drug treatment imposes selective pressures leading to the outgrowth of drug-resistant variants. Mass sequencing from patients’ biopsies identified a number of acquired KRAS mutations -both in cis and in trans- in resistant tumors. We demonstrate here that disease progression in vivo can also occur due to adaptive mechanisms and increased KRAS-GTP loading. Using the preclinical tool tri-complex KRASG12C-selective covalent inhibitor, RMC-4998 (also known as RM-029), that targets the active GTP-bound (ON) state of the oncogene, we provide a proof-of-concept that the clinical stage KRASG12C(ON) inhibitor RMC-6291 alone or in combination with KRASG12C(OFF) drugs can be an alternative potential therapeutic strategy to circumvent resistance due to increased KRAS-GTP loading.
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- 2024
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116. HDAC3 genetic and pharmacologic inhibition radiosensitizes fusion positive rhabdomyosarcoma by promoting DNA double-strand breaks
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Matteo Cassandri, Antonella Porrazzo, Silvia Pomella, Beatrice Noce, Clemens Zwergel, Francesca Antonella Aiello, Francesca Vulcano, Luisa Milazzo, Simona Camero, Deborah Pajalunga, Massimo Spada, Valeria Manzi, Giovanni Luca Gravina, Silvia Codenotti, Michela Piccione, Miriam Tomaciello, Michele Signore, Giovanni Barillari, Cinzia Marchese, Alessandro Fanzani, Biagio De Angelis, Concetta Quintarelli, Christopher R. Vakoc, Eleanor Y. Chen, Francesca Megiorni, Franco Locatelli, Sergio Valente, Antonello Mai, Rossella Rota, and Francesco Marampon
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Abstract Radiotherapy (RT) plays a critical role in the management of rhabdomyosarcoma (RMS), the prevalent soft tissue sarcoma in childhood. The high risk PAX3-FOXO1 fusion-positive subtype (FP-RMS) is often resistant to RT. We have recently demonstrated that inhibition of class-I histone deacetylases (HDACs) radiosensitizes FP-RMS both in vitro and in vivo. However, HDAC inhibitors exhibited limited success on solid tumors in human clinical trials, at least in part due to the presence of off-target effects. Hence, identifying specific HDAC isoforms that can be targeted to radiosensitize FP-RMS is imperative. We, here, found that only HDAC3 silencing, among all class-I HDACs screened by siRNA, radiosensitizes FP-RMS cells by inhibiting colony formation. Thus, we dissected the effects of HDAC3 depletion using CRISPR/Cas9-dependent HDAC3 knock-out (KO) in FP-RMS cells, which resulted in Endoplasmatic Reticulum Stress activation, ERK inactivation, PARP1- and caspase-dependent apoptosis and reduced stemness when combined with irradiation compared to single treatments. HDAC3 loss-of-function increased DNA damage in irradiated cells augmenting H2AX phosphorylation and DNA double-strand breaks (DSBs) and counteracting irradiation-dependent activation of ATM and DNA-Pkcs as well as Rad51 protein induction. Moreover, HDAC3 depletion hampers FP-RMS tumor growth in vivo and maximally inhibits the growth of irradiated tumors compared to single approaches. We, then, developed a new HDAC3 inhibitor, MC4448, which showed specific cell anti-tumor effects and mirrors the radiosensitizing effects of HDAC3 depletion in vitro synergizing with ERKs inhibition. Overall, our findings dissect the pro-survival role of HDAC3 in FP-RMS and suggest HDAC3 genetic or pharmacologic inhibition as a new promising strategy to overcome radioresistance in this tumor.
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- 2024
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117. Milk Quality and Economic Sustainability in Dairy Farming: A Systematic Review of Performance Indicators
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Vitaliano Fiorillo and Biagio Maria Amico
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economic sustainability ,performance indicators ,dairy industry ,milk quality ,Dairy processing. Dairy products ,SF250.5-275 - Abstract
The dairy industry plays a vital role in the global food system, providing a wide range of dairy products that are consumed by millions of people worldwide. Dairy farming provides a daily source of income, creating employment opportunities not only on farms, but also in transportation, milk processing, and the agricultural supply and services sectors. The increasingly pressing challenges and the high competition in the dairy industry, particularly in saturated markets, emphasize the importance for farms to undertake a comprehensive economic sustainability analysis that extends beyond mere yield monitoring. Empirical studies have found a weak adoption of robust performance measurement and control systems in dairy farms. Given the intricate macroeconomic landscape in developed nations and the imperative to address the multifaceted challenges of the industry, this study employs a systematic literature review (SLR) to evaluate whether academic research offers adequate guidance on economic performance indicators. The study finds out that the current repertoire of indicators, while relevant and partially related to quality attributes, fails to encapsulate the intricate interplay of variables and the nature of economic sustainability, highlighting the need to adopt additional indicators into the dimensions of operational efficiency and effectiveness, strategic investments, and financial strength.
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- 2024
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118. The reversed halo sign with a reticulonodular pattern as unusual findings of pulmonary infarct in acute pulmonary embolism: case report and literature review
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Antonio Pierro, Antonio Totaro, Gianluca Testa, Biagio Francesco Pio Apollonio, Stefano Carafa, Attilio Bontempo, Antonio Vallo, Savino Cilla, and Raffaella Basilico
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Reversed halo sign ,Pulmonary infarct ,Pulmonary embolism ,CT pulmonary angiography ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background The reversed halo, also known as the atoll sign, is a distinct sign with ring-shaped consolidation and central lucency. The reversed halo sign, initially emerging in cryptogenic organizing pneumonia, has been observed in various pulmonary diseases, including pulmonary embolism. The presence of this sign in the subpleural, posterior basal parts of the lower lobes, predominantly when solitary, should raise the possibility of other causes, such as pulmonary infarction. Case presentation We present a case of acute pulmonary embolism with pulmonary infarction discovered on a CT pulmonary angiogram in our emergency department, where the pulmonary infarction appears as a reverse halo sign with a reticulonodular pattern. The reticular nodular pattern in the halo sign is not typical of a pulmonary infarct presenting with a reverse halo sign. Conclusions To our knowledge, this is the first case of pulmonary infarction in acute pulmonary embolism with the appearance of a reverse halo sign with a reticulonodular pattern.
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- 2024
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119. Soft-Tissue Management Dental Implants with Digitally Customized Healing Abutments: A Pilot Study
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Maurizio De Francesco, Elisabetta Ferrara, Francesco Inchingolo, Grazieli Dalmaschio, Alberto Pispero, Angelo Michele Inchingolo, Gianna Dipalma, Tiziano Testori, Gianluca Martino Tartaglia, and Biagio Rapone
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customized healing abutment ,CAD/CAM ,dental implant ,soft tissue stability ,immediate loading ,Medicine - Abstract
Background: This pilot study aimed to evaluate the effectiveness of digitally crafted customized healing abutments in stabilizing peri-implant soft tissues following tooth extraction and assess the preservation of peri-implant soft tissue architecture over 5 years. Material and Methods: Forty patients (age ≥ 25 years) were divided into test (n = 20) and control (n = 20) groups. The test group received dental implants with immediate loading after tooth extraction, along with customized healing abutments fabricated using CAD/CAM technology. The control group received dental implants with immediate loading without customized healing abutments. The primary outcome was the change in distance between the peri-implant soft tissue margin and implant fixture surface from baseline to 5 years post implantation. Results: In the test group, there was a significant decrease in the distance between the peri-implant soft tissue margin and fixture surface from baseline to 5 years (p < 0.001), with pairwise comparisons showing significant differences between multiple time points (p < 0.05). The control group showed less pronounced changes over time. Conclusions: Within the limitations of this pilot study, digitally fabricated customized healing abutments appear effective in stabilizing peri-implant soft tissues and preserving soft tissue architecture around dental implants over 5 years following immediate implant placement. Randomized controlled trials are needed to confirm these findings.
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- 2024
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120. COVID-19 in patients with thymic epithelial tumors with or without Good’s syndrome: a single-center retrospective study
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Erica Pietroluongo, Annarita Peddio, Pietro De Placido, Marianna Tortora, Margaret Ottaviano, Monica Gelzo, Gustavo Cernera, Maria Foggia, Antonio Riccardo Buonomo, Biagio Pinchera, Emanuela Zappulo, Simona Mercinelli, Letizia Cattaneo, Alessia Sardanelli, Giulio Viceconte, Riccardo Scotto, Nicola Schiano Moriello, Alberto Servetto, Carmine De Angelis, Grazia Arpino, Giovannella Palmieri, Sabino De Placido, Roberto Bianco, Giuseppe Castaldo, Ivan Gentile, and Mario Giuliano
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SARS-CoV-2 ,COVID-19, thymic epithelial tumors ,Good’s syndrome ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Introduction Thymic epithelial tumors (TETs) are rare neoplasms often associated with immune-related disorders. Patients with Good’s syndrome (GS), an adult-acquired TET-related immunodeficiency, are at a high risk of mortality due to infectious diseases. This study aims to examine COVID-19 occurrence and severity in TET patients, with or without GS. Methods Clinical records of TET patients referred to the Regional Coordinating Center for Rare Tumors of Campania Region were retrospectively collected. During the observation period, elapsing from March 2020 to April 2023, the following data were collected: occurrence of SARS-CoV-2 infection; COVID-19 severity, according to the National Institute of Health (NIH) illness categories; COVID-19 treatment. COVID-19 occurrence and severity were assessed in the overall population and correlated with the presence of GS and/or other immune-related dysregulations. Results Overall, 47 TET patients were included in the study; 27 of these (57.4%) had GS. All participants had received a full cycle of mRNA vaccine for SARS-CoV2., Thirty-one patients (66.0%) experienced COVID-19, of whom 18 (58.0%) had previously received a diagnosis of GS. No significant association of GS and/or other immune-related dysregulations with SARS-CoV-2 infection occurrence was detected (Fisher’s exact test p = 1 and p = 0.3587, respectively). Among patients with GS, 8 (45.0%) reported a COVID-19 severity score of ≥ 3; whereas, only 1 of the 13 patients without GS (7.7%) had a severity score of ≥ 3. The correlation between presence of GS and COVID-19 severity (score 1 or 2 vs. ≥ 3) was statistically significant (p = 0.0448). No statistically significant association between COVID-19 severity and other immune-related syndromes were found (p = 1). Of note, all the hospitalized patients for NIH 4 and 5 COVID-19 had GS. Conclusions Our data suggest that TET patients, especially those with GS, require a careful multidisciplinary monitoring for SARS-CoV-2 infection, in order to establish tailored treatments and prophylactic protocols.
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- 2024
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121. Antegrade long giant ileocolic intussusception via colon–cecum cancer lead points: case report with focus on the sign of the python colon
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Antonio Pierro, Biagio Francesco Pio Apollonio, Paolo Mirco, Antonio Vallo, Roberto Cristino, Pierpaolo Oriente, Teresa Bevere, Gianluca Testa, and Antonio Totaro
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Case report ,Transient intussusception ,Adult intussusception ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background Ileocolic intussusception is a rare condition that is difficult to diagnose. A pathological lead point, usually malignant, is often the cause of adult intussusception. In emergency scenarios, radiologists must be able to identify this entity and its causes and express their opinions on associated complications. Case presentation The hospital's emergency room admitted a 75-year-old woman who was suffering from intermittent abdominal pain and constipation. An abdominal contrast-enhanced computed tomography revealed a long giant ileocolic intussusception. Considering the clinical stability and the absence of signs of complications on CT, the patient did not undergo an urgent surgical procedure but underwent a colonoscopy the following day. Surprisingly, the colonoscopy highlighted the spontaneous resolution and revealed the presence of the three tumour lead points in the cecum and ascending colon. A CT was performed after the colonoscopy, confirming the intussusception's resolution. The surgeon performed a right oncological hemicolectomy. The malignant lead points on histological examination were moderate to poorly differentiated adenocarcinomas. Conclusions A giant and long ileocolic intussusception with a long embedded visceral segment (the python colon sign) could suggest pathological lead points in the cecum and ascending colon. Despite the large size, a spontaneous resolution of the python colon is possible. In this scenario, even if, on imaging, it is impossible to macroscopically identify a lead point, in cases of giant and long ileocolic intussusceptions, every effort must be undertaken to search for the cause of the intussusception.
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- 2024
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122. Mechanistic patterns and clinical implications of oncogenic tyrosine kinase fusions in human cancers
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Taek-Chin Cheong, Ahram Jang, Qi Wang, Giulia C. Leonardi, Biagio Ricciuti, Joao V. Alessi, Alessandro Di Federico, Mark M. Awad, Maria K. Lehtinen, Marian H. Harris, and Roberto Chiarle
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Science - Abstract
Abstract Tyrosine kinase (TK) fusions are frequently found in cancers, either as initiating events or as a mechanism of resistance to targeted therapy. Partner genes and exons in most TK fusions are followed typical recurrent patterns, but the underlying mechanisms and clinical implications of these patterns are poorly understood. By developing Functionally Active Chromosomal Translocation Sequencing (FACTS), we discover that typical TK fusions involving ALK, ROS1, RET and NTRK1 are selected from pools of chromosomal rearrangements by two major determinants: active transcription of the fusion partner genes and protein stability. In contrast, atypical TK fusions that are rarely seen in patients showed reduced protein stability, decreased downstream oncogenic signaling, and were less responsive to inhibition. Consistently, patients with atypical TK fusions were associated with a reduced response to TKI therapies. Our findings highlight the principles of oncogenic TK fusion formation and selection in cancers, with clinical implications for guiding targeted therapy.
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- 2024
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123. Securing the Internet of Medical Things with ECG‐based PUF encryption
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Biagio Boi and Christian Esposito
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ElectroCardioGram (ECG) Based Encryption ,Internet of Medical Things (IoMT) ,Physical Unclonable Function (PUF) ,Computer engineering. Computer hardware ,TK7885-7895 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Abstract The Internet of Things (IoT) is revolutionizing the healthcare industry by enhancing personalized patient care. However, the transmission of sensitive health data in IoT systems presents significant security and privacy challenges, further exacerbated by the difficulty of exploiting traditional protection means due to poor battery equipment and limited storage and computational capabilities of IoT devices. The authors analyze techniques applied in the medical context to encrypt sensible data and deal with the unique challenges of resource‐constrained devices. A technique that is facing increasing interest is the Physical Unclonable Function (PUF), where biometrics are implemented on integrated circuits' electric features. PUFs, however, demand special hardware, so in this work, instead of considering the physical device as a source of randomness, an ElectroCardioGram (ECG) can be taken into consideration to make a ‘virtual’ PUF. Such an mechanism leverages individual ECG signals to generate a cryptographic key for encrypting and decrypting data. Due to the poor stability of the ECG signal and the typical noise existing in the measurement process for such a signal, filtering and feature extraction techniques must be adopted. The proposed model considers the adoption of pre‐processing techniques in conjunction with a fuzzy extractor to add stability to the signal. Experiments were performed on a dataset containing ECG records gathered over 6 months, yielding good results in the short term and valuable outcomes in the long term, paving the way for adaptive PUF techniques in this context.
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- 2024
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124. Improved constraints on hematite refractive index for estimating climatic effects of dust aerosols
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Longlei Li, Natalie M. Mahowald, María Gonçalves Ageitos, Vincenzo Obiso, Ron L. Miller, Carlos Pérez García-Pando, Claudia Di Biagio, Paola Formenti, Philip G. Brodrick, Roger N. Clark, Robert O. Green, Raymond Kokaly, Gregg Swayze, and David R. Thompson
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Geology ,QE1-996.5 ,Environmental sciences ,GE1-350 - Abstract
Abstract Uncertainty in desert dust composition poses a big challenge to understanding Earth’s climate across different epochs. Of particular concern is hematite, an iron-oxide mineral dominating the solar absorption by dust particles, for which current estimates of absorption capacity vary by over two orders of magnitude. Here, we show that laboratory measurements of dust composition, absorption, and scattering provide valuable constraints on the absorption potential of hematite, substantially narrowing its range of plausible values. The success of this constraint is supported by results from an atmospheric transport model compared with station-based measurements. Additionally, we identify substantial bias in simulating hematite abundance in dust aerosols with current soil mineralogy descriptions, underscoring the necessity for improved data sources. Encouragingly, the next-generation imaging spectroscopy remote sensing data hold promise for capturing the spatial variability of hematite. These insights have implications for enhancing dust modeling, thus contributing to efforts in climate change mitigation and adaptation.
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- 2024
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125. Clinic and dermoscopy of genital basal cell carcinomas (gBCCs): a retrospective analysis among 169 patients referred with genital skin neoplasms
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Scotti, Biagio, Vaccari, Sabina, Maltoni, Lorenzo, Robuffo, Silvia, Veronesi, Giulia, and Dika, Emi
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- 2024
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126. What's new in the diagnosis of periprosthetic joint infections: Focus on synovial fluid biomarkers
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Solarino, Giuseppe, Bizzoca, Davide, Moretti, Lorenzo, Vicenti, Giovanni, Piazzolla, Andrea, and Moretti, Biagio
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- 2022
127. Comutations and KRASG12C Inhibitor Efficacy in Advanced NSCLC.
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Negrao, Marcelo, Araujo, Haniel, Lamberti, Giuseppe, Cooper, Alissa, Akhave, Neal, Zhou, Teng, Delasos, Lukas, Hicks, J, Aldea, Mihaela, Minuti, Gabriele, Hines, Jacobi, Aredo, Jacqueline, Dennis, Michael, Scott, Susan, Bironzo, Paolo, Scheffler, Matthias, Christopoulos, Petros, Stenzinger, Albrecht, Riess, Jonathan, Kim, So, Goldberg, Sarah, Li, Mingjia, Wang, Qi, Qing, Yun, Ni, Ying, Do, Minh, Lee, Richard, Ricciuti, Biagio, Alessi, Joao, Wang, Jing, Resuli, Blerina, Landi, Lorenza, Tseng, Shu-Chi, Nishino, Mizuki, Digumarthy, Subba, Rinsurongkawong, Waree, Rinsurongkawong, Vadeerat, Vaporciyan, Ara, Blumenschein, George, Zhang, Jianjun, Owen, Dwight, Mountzios, Giannis, Shu, Catherine, Bestvina, Christine, Garassino, Marina, Marrone, Kristen, Gray, Jhanelle, Patel, Sandip, Cummings, Amy, Wakelee, Heather, Wolf, Juergen, Scagliotti, Giorgio, Cappuzzo, Federico, Barlesi, Fabrice, Patil, Pradnya, Drusbosky, Leylah, Gibbons, Don, Meric-Bernstam, Funda, Lee, J, Heymach, John, Hong, David, Heist, Rebecca, Awad, Mark, Skoulidis, Ferdinandos, Blakely, Collin, and Chakrabarti, Turja
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Humans ,Carcinoma ,Non-Small-Cell Lung ,Lung Neoplasms ,Kelch-Like ECH-Associated Protein 1 ,Phosphatidylinositol 3-Kinases ,Mutation ,NF-E2-Related Factor 2 ,DNA Helicases ,Nuclear Proteins ,Transcription Factors - Abstract
UNLABELLED: Molecular modifiers of KRASG12C inhibitor (KRASG12Ci) efficacy in advanced KRASG12C-mutant NSCLC are poorly defined. In a large unbiased clinicogenomic analysis of 424 patients with non-small cell lung cancer (NSCLC), we identified and validated coalterations in KEAP1, SMARCA4, and CDKN2A as major independent determinants of inferior clinical outcomes with KRASG12Ci monotherapy. Collectively, comutations in these three tumor suppressor genes segregated patients into distinct prognostic subgroups and captured ∼50% of those with early disease progression (progression-free survival ≤3 months) with KRASG12Ci. Pathway-level integration of less prevalent coalterations in functionally related genes nominated PI3K/AKT/MTOR pathway and additional baseline RAS gene alterations, including amplifications, as candidate drivers of inferior outcomes with KRASG12Ci, and revealed a possible association between defective DNA damage response/repair and improved KRASG12Ci efficacy. Our findings propose a framework for patient stratification and clinical outcome prediction in KRASG12C-mutant NSCLC that can inform rational selection and appropriate tailoring of emerging combination therapies. SIGNIFICANCE: In this work, we identify co-occurring genomic alterations in KEAP1, SMARCA4, and CDKN2A as independent determinants of poor clinical outcomes with KRASG12Ci monotherapy in advanced NSCLC, and we propose a framework for patient stratification and treatment personalization based on the comutational status of individual tumors. See related commentary by Heng et al., p. 1513. This article is highlighted in the In This Issue feature, p. 1501.
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- 2023
128. The Hubble constant tension: current status and future perspectives through new cosmological probes
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Dainotti, Maria, De Simone, Biagio, Montani, Giovanni, Schiavone, Tiziano, and Lambiase, Gaetano
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Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
The Hubble constant ($H_0$) tension is one of the major open problems in modern cosmology. This tension is the discrepancy, ranging from 4 to 6 $\sigma$, between the $H_0$ value estimated locally with the combination of Supernovae Ia (SNe Ia) + Cepheids and the cosmological $H_0$ obtained through the study of the Cosmic Microwave Background (CMB) radiation. The approaches adopted in Dainotti et al. 2021 (ApJ) and Dainotti et al. 2022 (Galaxies) are introduced. Through a binning division of the Pantheon sample of SNe Ia (Scolnic et al. 2018), the value of $H_0$ has been estimated in each of the redshift-ordered bins and fitted with a function lowering with the redshift. The results show a decreasing trend of $H_0$ with redshift. If this is not due to astrophysical biases or residual redshift evolution of the SNe Ia parameters, it can be explained in light of modified gravity theories, e.g., the $f(R)$ scenarios. We also briefly describe the possible impact of high-$z$ probes on the Hubble constant tension, such as Gamma-ray bursts (GRBs) and Quasars (QSOs), reported in Dainotti et al. 2022 (Galaxies) and Lenart et al. 2022 (ApJ), respectively., Comment: 60 pages, 4 figures, 7 panels, PoS 2022 proceeding
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- 2023
129. Phase Transitions in Particle Physics -- Results and Perspectives from Lattice Quantum Chromo-Dynamics
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Aarts, Gert, Aichelin, Joerg, Allton, Chris, Athenodorou, Andreas, Bachtis, Dimitrios, Bonanno, Claudio, Brambilla, Nora, Bratkovskaya, Elena, Bruno, Mattia, Caselle, Michele, Conti, Costanza, Contino, Roberto, Cosmai, Leonardo, Cuteri, Francesca, Del Debbio, Luigi, D'Elia, Massimo, Dimopoulos, Petros, Di Renzo, Francesco, Galatyuk, Tetyana, Guenther, Jana N., Houtz, Rachel, Karsch, Frithjof, Kotov, Andrey Yu., Lombardo, Maria Paola, Lucini, Biagio, Maio, Lorenzo, Panero, Marco, Pawlowski, Jan M., Pelissetto, Andrea, Philipsen, Owe, Rago, Antonio, Ratti, Claudia, Ryan, Sinéad M., Sannino, Francesco, Sasaki, Chihiro, Schicho, Philipp, Schmidt, Christian, Sharma, Sipaz, Soloveva, Olga, Sorba, Marianna, and Wiese, Uwe-Jens
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High Energy Physics - Lattice ,High Energy Physics - Phenomenology ,High Energy Physics - Theory ,Nuclear Theory - Abstract
Phase transitions in a non-perturbative regime can be studied by ab initio Lattice Field Theory methods. The status and future research directions for LFT investigations of Quantum Chromo-Dynamics under extreme conditions are reviewed, including properties of hadrons and of the hypothesized QCD axion as inferred from QCD topology in different phases. We discuss phase transitions in strong interactions in an extended parameter space, and the possibility of model building for Dark Matter and Electro-Weak Symmetry Breaking. Methodological challenges are addressed as well, including new developments in Artificial Intelligence geared towards the identification of different phases and transitions., Comment: 94 pages, 23 figures, GGI workshop "Phase Transitions in Particle Physics" review - v2: minor revisions and typo corrected, matches accepted version on PPNP
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- 2023
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130. Tuberculosis Infection Control: Experiences and Considerations from a Web Based Tool Implementation
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Murgia, Ylenia, primary, Sepulcri, Chiara, additional, Crupi, Lorenzo, additional, Bonetto, Monica, additional, Di Biagio, Antonio, additional, Bassetti, Matteo, additional, and Giacomini, Mauro, additional
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- 2024
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131. Advanced Monte Carlo simulation techniques
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D'Elia, Massimo, primary, Langfeld, Kurt, additional, and Lucini, Biagio, additional
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- 2024
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132. Data Analytics and Statistical Systems
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Langfeld, Kurt, primary and Lucini, Biagio, additional
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- 2024
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133. Statistical models
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Lucini, Biagio, primary
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- 2024
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134. Update on $SU(2)$ with one adjoint Dirac flavor
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Bennett, Ed, Athenodorou, Andreas, Bergner, Georg, Butti, Pietro, and Lucini, Biagio
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High Energy Physics - Lattice - Abstract
We present an update of our ongoing study of the SU(2) gauge theory with one flavor of Dirac fermion in the adjoint representation. Compared to our previous results we now have data at larger lattice volumes, smaller values of the fermion mass, and also larger values of $\beta$. We present data for the spectrum of mesons, baryons, glueballs, and the hybrid fermion-glue state, as well as new estimates of the mass anomalous dimension from both finite-size hyperscaling and the Dirac mode number, and discuss the implications of these data for the presence or otherwise of chiral symmetry breaking in this theory., Comment: 8 pages, 6 figures. Contribution to the 39th International Symposium on Lattice Field Theory, 8th-13th August, 2022, Bonn, Germany. Version accepted for publication in Proceedings of Science
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- 2022
135. The density of state method for first-order phase transitions in Yang-Mills theories
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Mason, David, Lucini, Biagio, Piai, Maurizio, Rinaldi, Enrico, and Vadacchino, Davide
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High Energy Physics - Lattice ,Astrophysics - Cosmology and Nongalactic Astrophysics ,High Energy Physics - Phenomenology ,High Energy Physics - Theory - Abstract
Lattice Field Theory can be used to study finite temperature first-order phase transitions in new, strongly-coupled gauge theories of phenomenological interest. Metastable dynamics arising in proximity of the phase transition can lead to large, uncontrolled numerical errors when analysed with standard methods. In this contribution, we discuss a prototype lattice calculation in which the first-order deconfinement transition in the strong Yang-Mills sector of the standard model is analysed using a novel lattice method, the logarithmic linear relaxation algorithm. This method provides a determination of the density of states of the system with exponential error suppression., Comment: Minor improvements in abstract and notation. Content and results unchanged
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- 2022
136. Pulmonary artery banding to treat end-stage heart failure in infants and young children: A multicenter study
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Massimo A. Padalino, MD, PhD, Domenico Crea, MD, Matteo Ponzoni, MD, Luca Vedovelli, PhD, Andrzey Kansy, MD, Thierry Bove, MD, Joseph Panzer, MD, PhD, Marc Gewillig, MD, Bjorn Cools, MD, Thomas Salaets, MD, Dexter Cheng, MD, Andrea Francavilla, MD, Alessia Cerutti, MD, Vladimiro Vida, MD, PhD, Giovanni Di Salvo, MD, PhD, and Biagio Castaldi, MD
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multicenter study ,end-stage heart failure ,dilated cardiomyopathy ,pulmonary artery banding ,late outcomes ,Surgery ,RD1-811 ,Specialties of internal medicine ,RC581-951 - Abstract
Background: Conventional treatment options for end-stage heart failure (ESHF) in children include heart transplantation (HT) and ventricular assist devices (VADs), both with significant drawbacks in the pediatric population. Pulmonary artery banding (PAB) has been effectively used as bridge to transplant or recovery in pediatric ESHF. We herein describe the early and mid-term clinical outcomes from a multicenter international experience. Methods: This is a multicenter retrospective study including children admitted for ESHF caused by dilated cardiomyopathy and treated with PAB. The primary outcome was the freedom from death/VAD/HT. Results: Thirty-one patients (median age 210 days [131-357]) with ESHF underwent PAB in 5 centers. Pediatric Interagency Registry for Mechanically Assisted Circulatory Support (PEDIMACS) score was I to III in 90%; 15 patients were intubated preoperatively. Preoperative left ventricular (LV) ejection fraction was
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- 2024
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137. Re‐evaluation of argon (E 938) and helium (E 939) as food additives
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EFSA FAF Panel (EFSA Panel on Food Additives and Flavourings), Laurence Castle, Monica Andreassen, Gabriele Aquilina, Maria Bastos, Polly Boon, Biagio Fallico, Reginald Fitzgerald, Maria Jose Frutos Fernandez, Bettina Grasl‐Kraupp, Ursula Gundert‐Remy, Rainer Gürtler, Eric Houdeau, Marcin Kurek, Henriqueta Louro, Patricia Morales, Sabina Passamonti, Salvatore Multari, Josef Daniel Rasinger, Ana Maria Rincon, Sam Vermeiren, and Camilla Smeraldi
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argon ,CAS No 7440‐37‐1 ,CAS No 7440‐59‐7 ,food additives ,helium ,noble gases ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract The Panel on Food Additives and Flavourings (FAF) provides a scientific opinion re‐evaluating the safety of the two food additives argon (E 938) and helium (E 939). Argon (Ar) and helium (He) are two noble gases, highly stable single atoms. Their chemical inertness is well known. Their physicochemical properties have served as a basis for their previous evaluations by SCF and JECFA, which have considered the use of these food additives safe even in the absence of a toxicological evaluation. No business operator or other interested party provided information in response to the call for data published by EFSA to support the re‐evaluation of these two food additives with respect to their identity and specifications, manufacturing process (including the identification and quantification of potential impurities) and how they are applied to food to exert their technological function. One business operator replied to the call for data issued by EFSA reporting use levels of E 938 as a packaging gas in one food category. Based on their physicochemical properties, both gases are considered by the Panel to be of low toxicological concern when used as food additives. No information was available on the potential presence of impurities of toxicological concern resulting from the manufacturing process(es) applied to the production of the food additives E 938 and E 939. The Panel however noted that a minimum purity of 99.0% is required to comply with existing specifications. The Panel concluded that the use of argon (E 938) and helium (E 939) as food additives does not raise a safety concern. The Panel recommended an amendment of the existing EU specifications to introduce the respective CAS numbers.
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- 2024
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138. Cancer-associated foam cells hamper protective T cell immunity and favor tumor progression in human colon carcinogenesis
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Barbara Vergani, Massimo Milione, Marco Vitellaro, Giulio Ferrero, Veronica Huber, Luca Lalli, Agata Cova, Paola Frati, Flavio Arienti, Licia Rivoltini, Simonetta Guarrera, Laura Cattaneo, Luca Sorrentino, Elena Daveri, Elena Casiraghi, Marta Zorza, Manuela Gariboldi, Patrizia Pasanisi, Daniele Morelli, Paola A Corsetto, Angela M Rizzo, Martina Stroscia, Vincenzo Lagano, Giovanna Sabella, and Biagio E Leone
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Colorectal cancer (CRC) remains a significant healthcare burden worldwide, characterized by a complex interplay between obesity and chronic inflammation. While the relationship between CRC, obesity and altered lipid metabolism is not fully understood, there are evidences suggesting a link between them. In this study, we hypothesized that dysregulated lipid metabolism contributes to local accumulation of foam cells (FC) in CRC, which in turn disrupts antitumor immunosurveillance.Methods Tumor infiltrating FC and CD8+ were quantified by digital pathology in patients affected by T2–T4 CRC with any N stage undergoing radical upfront surgery (n=65) and correlated with patients’ clinical outcomes. Multiparametric high-resolution flow cytometry analysis and bulk RNAseq of CRC tissue were conducted to evaluate the phenotype and transcriptomic program of immune cell infiltrate in relation to FC accumulation. The immunosuppressive effects of FC and mechanistic studies on FC-associated transforming growth factor-beta (TGF-β) and anti-PD-L1 inhibition were explored using an in-vitro human model of lipid-engulfed macrophages.Results FC (large CD68+ Bodipy+ macrophages) accumulated at the tumor margin in CRC samples. FChigh tumors exhibited reduced CD8+ T cells and increased regulatory T cells (Tregs). Functional transcriptional profiling depicted an immunosuppressed milieu characterized by reduced interferon gamma, memory CD8+ T cells, and activated macrophages mirrored by increased T-cell exhaustion and Treg enrichment. Furthermore, FChigh tumor phenotype was independent of standard clinical factors but correlated with high body mass index (BMI) and plasma saturated fatty acid levels. In CD8low tumors, the FChigh phenotype was associated with a 3-year disease-free survival rate of 8.6% compared with 28.7% of FClow (p=0.001). In-vitro studies demonstrated that FC significantly impact on CD8 proliferation in TFG-β dependent manner, while inhibition of TGF-β FC-related factors restored antitumor immunity.Conclusions FC exert immunosuppressive activity through a TGF-β-related pathway, resulting in a CD8-excluded microenvironment and identifying immunosuppressed tumors with worse prognosis in patients with primary CRC. FC association with patient BMI and dyslipidemia might explain the link of CRC with obesity, and offers novel therapeutic and preventive perspectives in this specific clinical setting.
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- 2024
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139. Clinical Improvement of Bullous Pemphigoid with Hyperkeratosis and Palmoplantar Keratoderma in Two Patients Treated with Dupilumab
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Giulia Pascolini, Feliciana Mariotti, Anna Pira, Biagio Didona, and Giovanni Di Zenzo
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Bullous pemphigoid ,dupilumab ,palmoplantar hyperkeratosis ,Dermatology ,RL1-803 - Abstract
Abstract missing (Short communication)
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- 2024
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140. Stage-dependent phosphoproteome remodeling of Parkinson's disease blood cells
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Giorgia Massacci, Veronica Venafra, Maximilian Zwiebel, Maria Wahle, Rocco Cerroni, Jacopo Bissacco, Livia Perfetto, Vito Michienzi, Alessandro Stefani, Nicola Biagio Mercuri, Tommaso Schirinzi, and Francesca Sacco
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Parkinson's disease ,Peripheral blood ,Phosphoproteomic ,Biomarker ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The complexity and heterogeneity of PD necessitate advanced diagnostic and prognostic tools to elucidate its molecular mechanisms accurately. In this study, we addressed this challenge by conducting a pilot phospho-proteomic analysis of peripheral blood mononuclear cells (PBMCs) from idiopathic PD patients at varying disease stages to delineate the functional alterations occurring in these cells throughout the disease course and identify key molecules and pathways contributing to PD progression. By integrating clinical data with phospho-proteomic profiles across various PD stages, we identify potential stage-specific molecular signatures indicative of disease progression. This integrative approach allows for the discernment of distinct disease states and enhances our understanding of PD heterogeneity.
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- 2024
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141. Safety evaluation of curdlan as a food additive
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EFSA Panel on Food Additives and Flavourings (FAF), Monica Andreassen, Gabriele Aquilina, Maria Lourdes Bastos, Polly Boon, Biagio Fallico, Reginald FitzGerald, Maria Jose Frutos Fernandez, Bettina Grasl‐Kraupp, Ursula Gundert‐Remy, Rainer Gürtler, Eric Houdeau, Marcin Kurek, Henriqueta Louro, Patricia Morales, Sabina Passamonti, José Manuel Barat Baviera, Gisela Degen, David Gott, Lieve Herman, Jean‐Charles Leblanc, Peter Moldeus, Ine Waalkens‐Berendsen, Detlef Wölfle, Consuelo Civitella, Jaime Aguilera Entrena, Agnieszka Mech, Salvatore Multari, Laura Ruggeri, Camilla Smeraldi, Alexandra Tard, Sam Vermeiren, and Laurence Castle
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CAS number 54724‐00‐4 ,gut microbiota ,INS No.: 424 ,Rhizobium radiobacter biovar 1 ,stabiliser ,β‐1,3‐glucan ,Nutrition. Foods and food supply ,TX341-641 ,Chemical technology ,TP1-1185 - Abstract
Abstract The EFSA Panel on Food Additives and Flavourings (FAF) provides a scientific opinion on the safety of curdlan as a new food additive used as firming and gelling agent, stabiliser, thickener. Curdlan is a high molecular weight polysaccharide consisting of β‐1,3‐linked glucose units, produced by fermentation from Rhizobium radiobacter biovar 1 strain NTK‐u. The toxicological dataset consisted of sub‐chronic, chronic and carcinogenicity, reproductive and developmental toxicity studies as well as genotoxicity. In vivo data showed that curdlan is not absorbed as such but is extensively metabolised by the gut microbiota into CO2 and other innocuous compounds. Curdlan was not genotoxic and was well‐tolerated with no overt organ‐specific toxicity. Effects observed at very high doses of curdlan, such as decreased growth and increased cecum weight, are common for indigestible bulking compounds and therefore considered physiological responses. In a combined three‐generation reproductive and developmental toxicity study, decreased pup weight was observed during lactation at 7500 mg curdlan/kg body weight (bw) per day, the highest dose tested. The Panel considered the observed effects as treatment‐related and adverse, although likely secondary to nutritional imbalance and identified a conservative no observed adverse effect level (NOAEL) of 2500 mg/kg bw per day. Despite the limitations noted in the dataset, the Panel was able to conclude applying the margin of exposure (MOE) approach. Given that curdlan and its break‐down products are not absorbed and that the identified adverse effect is neither systemic nor local, no adjustment factor was deemed necessary. Thus, an MOE of at least 1 was considered sufficient. The highest exposure estimate was 1441 mg/kg bw per day in toddlers at the 95th percentile of the proposed maximum use level exposure assessment scenario. The Panel concluded that there is no safety concern for the use of curdlan as a food additive at the proposed uses and use levels.
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- 2024
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142. Three-Year Overall Survival Outcomes and Correlative Analyses in Patients With NSCLC and High (50%–89%) Versus Very High (≥90%) Programmed Death-Ligand 1 Expression Treated With First-Line Pembrolizumab or Cemiplimab
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Biagio Ricciuti, MD, PhD, Arielle Elkrief, MD, Jessica Lin, MD, Jianjun Zhang, MD, Joao V. Alessi, MD, Giuseppe Lamberti, MD, PhD, Malini Gandhi, MD, Alessandro Di Federico, MD, Federica Pecci, MD, Xinan Wang, PhD, Maisam Makarem, MD, PhD, Cassio Murilo Hidalgo Filho, MD, Teresa Gorria, MD, Arushi Saini, BS, Cindy Pabon, MD, James Lindsay, PhD, Kathleen L. Pfaff, PhD, Emma L. Welsh, BS, Mizuki Nishino, MD, Lynette M. Sholl, MD, Scott Rodig, MD, Saadettin Kilickap, MD, Petra Rietschel, MD, Debra AG. McIntyre, PhD, Jean-Francois Pouliot, MD, Mehmet Altan, MD, Justin F. Gainor, MD, John V. Heymach, MD, Adam J. Schoenfeld, MD, and Mark M. Awad, MD, PhD
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PD-L1 ,Cemiplimab ,Pembrolizumab ,Long-term outcomes ,Biomarkers ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Introduction: Responses to first-line programmed cell death protein 1 inhibition vary among patients with metastatic NSCLC and a programmed death-ligand 1 (PD-L1) tumor proportion score (TPS) greater than or equal to 50%. We previously reported improved clinical outcomes to first-line programmed cell death protein 1 inhibition in patients with metastatic NSCLC with a PD-L1 TPS of greater than or equal to 90% versus 50% to 89% in a pilot study. Here, we report the three-year survival with first-line pembrolizumab and cemiplimab in two large independent cohorts of patients with PD-L1 TPS greater than or equal to 90% versus 50% to 89% and characterize genomic and immunophenotypic differences between these PD-L1 expression groups, which were largely unknown. Methods: We analyzed three-year outcomes of the following two independent cohorts: (1) a multicenter cohort of patients from four academic centers in the United States treated with pembrolizumab and (2) EMPOWER-Lung 1, randomized, phase III trial comparing first-line cemiplimab with chemotherapy. Tumor genomic profiling and multiplexed immunofluorescence were performed to evaluate genomic and immunophenotypic correlates of very high PD-L1 expression. Results: At three years of follow-up, progression-free survival (hazard ratio [HR], 0.69; p < 0.001) and overall survival (HR, 0.70; p < 0.01) to first-line commercial pembrolizumab were significantly improved in patients with a PD-L1 TPS greater than or equal to 90% versus 50% to 89%. In the EMPOWER-Lung 1, patients assigned to the cemiplimab arm with a PD-L1 TPS greater than or equal to 90% also had significant improvements in progression-free survival (HR, 0.53; p < 0.0001) and overall survival (HR, 0.63; p = 0.007) compared with those with a PD-L1 of 50% to 89%. Tumor genomic profiling of 553 NSCLC samples revealed that mutations in STK11 and SMARCA4 were significantly more frequent in tumors with a PD-L1 TPS of 50% to 89% compared with those with a PD-L1 TPS greater than or equal to 90% (Q < 0.15), whereas BRCA2 was enriched in NSCLC samples with a PD-L1 TPS greater than or equal to 90% (Q < 0.15). Multiplexed immunofluorescence on 93 NSCLC samples identified higher intratumoral CD8+PD1+ T cells (p = 0.02) in tumors with PD-L1 TPS greater than or equal to 90% versus 50% to 89%. Conclusion: Pembrolizumab and cemiplimab were found to have long-term survival benefit and favorable genomic and immunophenotypic profile in patients with advanced NSCLC with PD-L1 TPS greater than or equal to 90% compared with TPS 50% to 89%.
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- 2024
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143. Multimodality imaging and functional assessment in patients with systemic right ventricle and biventricular physiology: a retrospective single-center study
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Alice Pozza, Martina Avesani, Irene Cattapan, Elena Reffo, Annachiara Cavaliere, Jolanda Sabatino, Sofia Piana, Anna Molinaroli, Domenico Sirico, Biagio Castaldi, Alessia Cerutti, Roberta Biffanti, and Giovanni di Salvo
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Systemic right ventricle ,cardiac magnetic resonance imaging ,cardiopulmonary exercise test ,echocardiography ,Medicine - Abstract
Systemic right ventricle (sRV) dysfunction is frequent in patients with congenitally corrected transposition of great arteries (cc-TGA) and those with dextro-transposition of great arteries (D-TGA) after Mustard/Senning operations. This condition should be identified promptly. We aimed to compare echocardiographic parameters with cardiac magnetic resonance (CMR)-derived parameters in patients with sRV and to evaluate their correlation with clinical variables and exercise capacity. Patients with cc-TGA and D-TGA after Mustard/Senning who underwent standard and advanced (speckle tracking and 3D) echocardiography and CMR (including feature-speckle tracking) were included. Clinical and imaging parameters were collected. Echocardiographic-derived right ventricle end-diastolic area and end-systolic area correlated with 3D echocardiographic-derived right ventricle end-diastolic and end-systolic volume (r=0.6, p=0.006 and r=0.8, p=0.002). 3D ejection fraction (EF) correlated with fractional area change and tricuspid annular plane systolic excursion (TAPSE) (r=0.8, p=0.001 and r=0.7, p=0.03). sRV global longitudinal strain correlated with systemic atrial strain (sAS) (r=-0.6, p=0.01). CMR-derived EF correlated with CMR-derived global longitudinal strain (GLS) both endocardial and myocardial (r=-0.7, p=0.007 and r=-0.6, p=0.005). sRV areas as assessed by echo correlated with CMR-derived volumes (r=0.9, p=0.0001 for diastole and r=0.8, p=0.0001 for systole). Similarly, a correlation was found between sRV echo-derived GLS and CMR-derived GLS, both endocardial and myocardial (r=0.8, p=0.001 and r=0.7, p=0.01). The only imaging parameter which correlated with peak V02 was sAS (r=0.55, p=0.04). When comparing cc-TGA and D-TGA, the former showed better GLS-derived values as assessed by CMR (CMR-derived right ventricle endocardial longitudinal strain -23.2% versus -17.2%, p=0.002; CMR-derived right ventricle myocardial longitudinal strain -21.2% versus -16.7%; p=0.05), bigger systemic atrial area (20.2 cm2/m2 versus 8.4 cm2/m2, p=0.005) and higher TAPSE values (16.2 mm versus 12.2 mm, p=0.04). Echocardiography is valid to screen for sRV dilatation and function and to guide the timing for CMR. The investigation of atrial deformation imaging may help to better understand diastolic function. Patients with cc-TGA show better cardiac function compared to patients after atrial switch. Further investigations are needed to identify imaging parameters linked to exercise capacity.
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- 2024
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144. Clinical and laboratory predictors of mpox severity and duration: an Italian multicentre cohort study (mpox-Icona)Research in context
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Valentina Mazzotta, Silvia Nozza, Simone Lanini, Davide Moschese, Alessandro Tavelli, Roberto Rossotti, Francesco Maria Fusco, Lorenzo Biasioli, Giulia Matusali, Angelo Roberto Raccagni, Davide Mileto, Chiara Maci, Giuseppe Lapadula, Antonio Di Biagio, Luca Pipitò, Enrica Tamburrini, Antonella d’Arminio Monforte, Antonella Castagna, Andrea Antinori, Spinello Antinori, Chiara Baiguera, Gianmaria Baldin, Matteo Bassetti, Paolo Bonfanti, Giorgia Brucci, Elena Bruzzesi, Caterina Candela, Antonio Cascio, Antonella d'Arminio Monforte, Andrea Delama, Gabriella D'Ettorre, Damiano Farinacci, Maria Rita Gismondo, Andrea Gori, Massimiliano Lanzafame, Miriam Lichtner, Giulia Mancarella, Alessandro Mancon, Giulia Marchetti, Emanuele Nicastri, Alessandro Pandolfo, Francesca Panzo, Stefania Piconi, Carmela Pinnetti, Alessandro Raimondi, Marco Ridolfi, Giuliano Rizzardini, Alessandra Rodanò, Margherita Sambo, Vincenzo Sangiovanni, Nadia Sangiovanni, Daniele Tesoro, and Serena Vita
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mpox ,Severity ,MPOXV ,Evolution ,Recovery ,Ct-value ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Severe and prolonged mpox courses have been described during the 2022–2023 outbreak. Identifying predictors of severe evolution is crucial for improving management and therapeutic strategies. We explored the predictors of mpox severity and tested the association between mpox severity and viral load in biological fluids. We also analysed the predictors of disease duration and kinetics of inflammatory markers and described the viral presence and duration of shedding in biological fluids. Methods: This multicentre historical cohort study included adults diagnosed with laboratory-confirmed mpox diagnosis between May 2022 and September 2023 at 15 Italian centres. Patients were followed up from the day of diagnosis until clinical recovery. Biological fluids (blood, urine, saliva, and oropharyngeal and rectal swabs) were collected from each subgroup during the course of the disease and after healing. The primary outcomes were disease severity (presence of mucosal involvement, extended rash, or need for hospitalisation) and its association with the cycle threshold value (Ct-value, surrogate of viral load) in biological fluids, using standard linear and linear mixed-effect logistic regression models. Among the secondary outcomes, predictors of disease duration were assessed using a linear regression model. Findings: A total of 541 patients were enrolled, including four (0.74%) women, with a median age of 38 years (IQR 33–44). Among the 235 people living with HIV (PLWH) (43.44%), 22 (4.07%) had a CD4 count lower than 350 cells/μL. Severe mpox was reported in 215 patients (39.74%). No patient died. Multivariable analysis showed that, severe mpox was more likely among Caucasians (OR 1.82; 95% CI 1.14–2.90, p = 0.012) and patients who had an onset of fever (1.95; 1.27–2.99, p = 0.002), lymphadenopathy (2.30; 1.52–3.48, p
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- 2024
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145. Protocol for detecting mitochondria extracellular vesicles of brown adipose tissue in mice
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Flavia Tortolici, Claudia Di Biagio, Daniele Lettieri-Barbato, and Katia Aquilano
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Cell Biology ,Cell culture ,Cell Membrane ,Flow Cytometry ,Metabolism ,Molecular Biology ,Science (General) ,Q1-390 - Abstract
Summary: Brown adipose tissue (BAT) is mitochondria rich, enabling high oxidative metabolism for non-shivering thermogenesis. The release of large/small extracellular vesicles (EVs) containing mitochondria or mitochondrial fragments, termed mito-EVs, may support mitochondrial quality control or intercellular communication. We present a protocol to isolate and characterize mito-EVs. We detail steps for BAT processing, cell debris removal, differential centrifugation (dC), and mito-EV analysis by flow cytometry and immunoblotting assays.For complete details on the use and execution of this protocol, please refer to Rosina et al.1 : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.
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- 2024
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146. Last interglacial and MIS 9e relative sea-level highstands in the Central Mediterranean: a reappraisal from coastal cave deposits in the Cilento area, Southern Italy
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Ilaria Isola, Monica Bini, Andrea Columbu, Mauro Antonio Di Vito, Biagio Giaccio, Hsun-Ming Hu, Fabio Martini, Francesca Pasquetti, Lucia Sarti, Federica Mulè, Antonio Mazzoleni, Chuan-Chou Shen, and Giovanni Zanchetta
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Lithophaga burrows ,Notches ,Last interglacial highstand ,MIS 5e ,MIS 9e highstand ,U/Th dating ,Geography. Anthropology. Recreation ,Archaeology ,CC1-960 - Abstract
A revaluation of the relative sea-level (RSL) indicators in the Baia di Infreschi (Cilento, Southern Italy) supported by new 30 U/Th dating on speleothems indicates that the upper level of Lithophaga burrows identified by Bini et al. (2020) at ∼9 m a.s.l. and correlated to the Last Interglacial (LIG) highstand should be referred to the highstand of the MIS 9e, whereas the local RSL for the highstand of the LIG is now reassessed at 5.3 ± 0.18 m a.s.l. The upper level of the Lithophaga marker can be followed for ∼12 km along the coast, suggesting a substantial absence of important relative tectonic movements. In the Baia di Infreschi an additional marine indicator, a notch sealed by a flowstone dated ∼110 ka, indicates several phases of RSL stationing below the maximum highstand of the LIG. The presence of flowstones as low as 2 m a.s.l. dated to the MIS 7 shows that the highstand of MIS 7 was probably below the present sea level. All these evidences allow us to reassess the stratigraphy of some archaeological caves in the area, indicating that the sedimentary successions preserved there are older than what was previously believed.
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- 2024
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147. A holistic evaluation of patients with chronic Hepatitis D virus (HDV) infection enrolled in the Italian PITER-B and delta cohort
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Loreta A. Kondili, Giuseppina Brancaccio, Maria Elena Tosti, Barbara Coco, Maria Giovanna Quaranta, Vincenzo Messina, Alessia Ciancio, Filomena Morisco, Valentina Cossiga, Ernesto Claar, Valerio Rosato, Marianna Ciarallo, Irene Cacciola, Francesca Romana Ponziani, Lucia Cerrito, Roberta Coppola, Francesco Longobardi, Elisa Biliotti, Alessia Rianda, Francesco Barbaro, Nicola Coppola, Maria Stanzione, Francesco Barchiesi, Stefano Fagiuoli, Mauro Viganò, Marco Massari, Francesco Paolo Russo, Alberto Ferrarese, Diletta Laccabue, Vito Di Marco, Pierluigi Blanc, Aldo Marrone, Giulia Morsica, Alessandro Federico, Donatella Ieluzzi, Alba Rocco, Francesco Giuseppe Foschi, Alessandro Soria, Ivana Maida, Luchino Chessa, Michele Milella, Elena Rosselli Del Turco, Salvatore Madonia, Liliana Chemello, Ivan Gentile, Pierluigi Toniutto, Matteo Bassetti, Lorenzo Surace, Leonardo Baiocchi, Adriano Pellicelli, Adriano De Santis, Massimo Puoti, Elisabetta Degasperi, Grazia Anna Niro, Anna Linda Zignego, Antonio Craxi, Giovanni Raimondo, Teresa Antonia Santantonio, Maurizia Rossana Brunetto, Giovanni Battista Gaeta, Alessio Aghemo, Chiara Baiguera, Pier Maria Battezzati, Sara Battistella, Maria Grazia Bavetta, Costanza Bertoni, Carolina Boni, Paola Brambilla, Antonella Bray, Federica Briano, Enrico Carmenini, Francesco Castelli, Luisa Cavalletto, Federica Cerini, Luciana Chidichimo, Elisa Colella, Giuliana Cologni, Silvia Como, Romina Corsini, Chiara Costa, Rosa Cotugno, Silvia Cretella, Fernando De Angelis, Pasqualina De Leo, Giovanni Di Perri, Elisabetta Falbo, Luigina Ferrigno, Ezio Fornasiere, Daniela Francisci, Pietro Gatti, Pietro Lampertico, Ilaria Lenci, Anna Licata, Alfredo Marzano, Antonio Mastroianni, Cesare Mazzaro, Monica Monti, Gerardo Nardone, Laura Ambra Nicolini, Nicola Passigato, Maria Bruna Pasticci, Piera Pierotti, Biagio Pinchera, Teresa Pollicino, Carmen Porcu, Giulia Quartini, Gabriele Rancatore, Mario Romeo, Maria Grazia Rumi, Annalisa Saracino, Ornella Schioppa, Ilaria Serio, Roberta Soffredini, Xhimi Tata, Marco Tizzani, Matteo Tonnini, Carlo Torti, Daniela Valenti, Serena Zaltron, and Alessia Zoncada
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Cohort ,IFN treatment ,Comorbidities ,Infectious and parasitic diseases ,RC109-216 - Abstract
Background and Aims: We aimed to characterize the epidemiologic and comorbidities profiles of patients with chronic Hepatitis D (CHD) followed in clinical practice in Italy and explored their interferon (IFN) eligibility. Methods: This was a cross-sectional study of the PITER cohort consisting of consecutive HBsAg-positive patients from 59 centers over the period 2019-2023. Multivariable analysis was performed by logistic regression model. Results: Of 5492 HBsAg-positive enrolled patients, 4152 (75.6%) were screened for HDV, 422 (10.2%) were anti-HDV positive. Compared with HBsAg mono-infected, anti-HDV positive patients were more often younger, non-Italians, with a history of drug use, had elevated alanine transaminase (ALT), cirrhosis, or hepatocellular carcinoma (HCC). Compared with Italians, anti-HDV positive non-Italians were younger (42.2% age ≤ 40 years vs. 2.1%; P < 0.001), more often females (males 43.0% vs. 68.6%; P < 0.001) with less frequent cirrhosis and HCC. HDV-RNA was detected in 63.2% of anti-HDV-positive patients, who were more likely to have elevated ALT, cirrhosis, and HCC. Extrahepatic comorbidities were present in 47.4% of anti-HDV positive patients and could affect the eligibility of IFN-containing therapies in at least 53.0% of patients in care. Conclusions: CHD affects young, foreign-born patients and older Italians, of whom two-thirds had cirrhosis or HCC. Comorbidities were frequent in both Italians and non-Italians and impacted eligibility for IFN.
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- 2024
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148. Tuberculosis Infection Control: Experiences and Considerations from a Web Based Tool Implementation.
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Chiara Sepulcri, Lorenzo Crupi, Monica Bonetto, Antonio Di Biagio, Matteo Bassetti, and Mauro Giacomini
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- 2024
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149. Multisensor Validation of Snow Albedo and Grain Size Retrieval in Mountain Areas.
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Claudia Notarnicola, Benedita Milheiro Santos, Riccardo Barella, Michele Claus, Edoardo Cremonese, Ludovica De Gregorio, Biagio Di Mauro, Gabriele Schwaizer, and Thomas Nagler
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- 2024
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150. Machine Learning Algorithms Assessment for Snow LWC Retrieval from SAR Data.
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Emanuele Santi, Simonetta Paloscia, Simone Pettinato, Fabrizio Baroni, Simone Pilia, Roberto Colombo, Claudia Ravasio, and Biagio Di Mauro
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- 2024
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