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(1) Background: Reviewing biological material under the microscope is a demanding and time-consuming process, prone to diagnostic pitfalls. In this study, a methodology for tomographic imaging of tissue sections is presented, relying on the idea that each tissue sample has a finite thickness and, therefore, it is possible to create images at different levels within the sample, revealing details that would probably not be seen otherwise. (2) Methods: Optical slicing was possible by developing a custom-made microscopy stage controlled by an ARDUINO. The custom-made stage, besides the normal sample movements that it should provide along the x-, y-, and z- axes, may additionally rotate the sample around the horizontal axis of the microscope slide. This rotation allows the conversion of the optical microscope into a CT geometry, enabling optical slicing of the sample using projection-based tomographic reconstruction algorithms. (3) Results: The resulting images were of satisfactory quality, but they exhibited some artifacts, which are particularly evident in the axial plane images. (4) Conclusions: Using classical tomographic reconstruction algorithms at limited angles, it is possible to investigate the sample at any desired optical plane, revealing information that would be difficult to identify when focusing only on the conventional 2D images.

Accurate diagnosis and timely intervention are key to addressing common knee conditions effectively. In this work, we aim to identify textural changes in knee lesions based on bone marrow edema (BME), injury (INJ), and osteoarthritis (OST). One hundred and twenty-one MRI knee examinations were selected. Cases were divided into three groups based on radiological findings: forty-one in the BME, thirty-seven in the INJ, and forty-three in the OST groups. From each ROI, eighty-one radiomic descriptors were calculated, encoding texture information. The results suggested differences in the texture characteristics of regions of interest (ROIs) extracted from PD-FSE and STIR sequences. We observed that the ROIs associated with BME exhibited greater local contrast and a wider range of structural diversity compared to the ROIs corresponding to OST. When it comes to STIR sequences, the ROIs related to BME showed higher uniformity in terms of both signal intensity and the variability of local structures compared to the INJ ROIs. A combined radiomic descriptor managed to achieve a high separation ability, with AUC of 0.93 ± 0.02 in the test set. Radiomics analysis may provide a non-invasive and quantitative means to assess the spatial distribution and heterogeneity of bone marrow edema, aiding in its early detection and characterization.

The purpose of the study is to develop and automate a series of steps for enabling digital 3D tissue volume generation in conventional Brightfield microscopy for histopathology applications. Tissue samples were retrieved from the General Hospital of Athens "Hippocration", Greece. Samples were placed on a microtome that produced consecutive 2 μm sections. Each section was stained using Hematoxylin and Eosin and placed on microscope slides. A histopathologist specified the region of interest (ROI) on each slide. A 2D image was created from each ROI using a LEICA DM2500 microscope with a LEICA DFC 420C camera. Τhe 3D volume was created by stacking consecutive 2D images using a deep learning image interpolation method. The reconstructed 3D tissue volumes were evaluated by an expert histopathologist. Results showed that the 3D volumes might reveal information that is not clearly visible or even undetectable in the conventional 2D Brightfield images. In contrast to other 3D tissue imaging technologies, the proposed method (a) does not depend on the distance of the sample from the objectives producing 3D tissue volumes at any desired magnification, (b) does not require a special instrument, it may be implemented with any conventional Brightfield microscope, and (c) can be used for any given routine application, not only for some specialized clinical studies. The proposed study provides the basis for a feasible, cost-less and time-less upgrade of any standard 2D microscope into a 3D imaging instrument that may enhance the quality of diagnostic assessments in histopathology. HIGHLIGHTS: A method for 3D tissue volume generation. 3D volumes reveal information not clearly visible or even undetectable in 2D images. A method for feasible, cost-less and time-less upgrade of any Brightfield 2D microscope into a 3D imaging instrument., (© 2022 Wiley Periodicals LLC.)

Our purpose was to employ microscopy images of amplified in breast cancer 1 (AIB1)-stained biopsy material of patients with colorectal cancer (CRC) to: (a) find statistically significant differences (SSDs) in the texture and color of the epithelial gland tissue, between 5-year survivors and non-survivors after the first diagnosis and (b) employ machine learning (ML) methods for predicting the CRC-patient 5-year survival. We collected biopsy material from 54 patients with diagnosed CRC from the archives of the University Hospital of Patras, Greece. Twenty-six of the patients had survived 5 years after the first diagnosis. We selected regions of interest containing the epithelial gland at different microscope lens magnifications. We computed 69 textural and color features. Furthermore, we identified features with SSDs between the two groups of patients and we designed a supervised ML system for predicting the CRC-patient 5-year survival. Additionally, we employed the VGG16 pretrained convolution neural network to extract deep learning (DL) features, the support vector machines classifier, and the bootstrap cross-validation method for boosting the accuracy of predicting 5-year survival. Fourteen features sustained SSDs between the two groups of patients. The supervised ML system achieved 87% accuracy in predicting 5-year survival. In comparison, the DL system, using images from all magnifications, gave 97% classification accuracy. Glandular texture in 5-year non-survivors appeared to be of lower contrast, coarseness, roughness, local pixel correlation, and lower AIB1 variation, all indicating loss of textural definition. The supervised ML system revealed useful information regarding features that discriminate between 5-year survivors and non-survivors while the DL system displayed superior accuracy by employing DL features., (© 2021 Wiley Periodicals LLC.)

The aim of the present study was to design an adaptable pattern recognition (PR) system to discriminate low- from high-grade squamous intraepithelial lesions (LSIL and HSIL, respectively) of the cervix using microscopy images of hematoxylin and eosin (H&E)-stained biopsy material from two different medical centers. Clinical material comprised H&E-stained biopsies of 66 patients diagnosed with LSIL (34 cases) or HSIL (32 cases). Regions of interest were selected from each patient's digitized microscopy images. Seventy-seven features were generated, regarding the texture, morphology and spatial distribution of nuclei. The probabilistic neural network (PNN) classifier, the exhaustive search feature selection method, the leave-one-out (LOO) and the bootstrap validation methods were used to design the PR system and to assess its precision. Optimal PR system design and evaluation were made feasible by the employment of graphics processing unit (GPU) and Compute Unified Device Architecture (CUDA) technologies. The accuracy of the PR-system was 93% and 88.6% when using the LOO and bootstrap validation methods, respectively. The proposed PR system for discriminating LSIL from HSIL of the cervix was designed to operate in a clinical environment, having the capability of being redesigned when new verified cases are added to its repository and when data from other medical centers are included, following similar biopsy material preparation procedures.

Objective: The purpose of this study is to propose a complete methodology for automatically registering three-dimensional (3D) pre-operative and post-operative CT scan dental volumes as well as to provide a toolset for quantifying and evaluating their volumetric differences., Methods: The proposed methodology was applied to cone beam CT (CBCT) data from 20 patients in order to assess the volume of augmented bone in the alveolar region. In each case, the pre-operative and post-operative data were registered using a 3D affine-based scheme. The performance of the 3D registration algorithm was evaluated by measuring the average distance between the edges of the registered sets. The differences between the registered sets were assessed through 3D subtraction radiography. The volume of the differences was finally evaluated by defining regions of interest in each slice of the subtracted 3D data and by combining all respective slices to model the desired volume of interest. The effectiveness of the algorithm was verified by applying it to several reference standard-shaped objects with known volumes., Results: Satisfactory alignment was achieved as a low average offset of 1.483 ± 1.558 mm was recorded between the edges of the registered sets. Moreover, the estimated volumes closely matched the volumes of the reference objects used for verification, as the recorded volume differences were less than 0.4 mm(3) in all cases., Conclusion: The proposed method allows for automatic registration of 3D CBCT data sets and the volumetric assessment of their differences in particular areas of interest. The proposed approach provides accurate volumetric measurements in three dimensions, requiring minimal user interaction.

Error processing in subjects performing actions has been associated with the Event-Related Potential (ERP) components called Error-Related Negativity (ERN) and Error Positivity (Pe). In this paper, features based on statistical measures of the sample of averaged ERP recordings are used for classifying correct from incorrect actions. Three feature selection techniques were used and compared. Classification was done by means of a kNN and a Support Vector Machines (SVM) classifier. The use of a leave-one-out approach in the feature selection provided sensitivity and specificity values concurrently higher than or equal to 87.5%, for both classifiers. The classification results were significantly better for the time window that included only the ERN, as compared to time windows including also Pe., (Copyright © 2010 Elsevier Ltd. All rights reserved.)

Contrast correction is often required in digital subtraction radiography when comparing medical data acquired over different time periods owing to dissimilarities in the acquisition process. This paper focuses on dental radiographs and introduces a novel approach for correcting the contrast in dental image pairs. The proposed method modifies the subject images by applying typical registration techniques on their histograms. The proposed histogram registration method reshapes the histograms of the two subject images in such a way that these images are matched in terms of their contrast deviation. The method was extensively tested over 4 sets of dental images, consisting of 72 registered dental image pairs with unknown contrast differences as well as 20 dental pairs with known contrast differences. The proposed method was directly compared against the well-known histogram-based contrast correction method. The two methods were qualitatively and quantitatively evaluated for all 92 available dental image pairs. The two methods were compared in terms of the contrast root mean square difference between the reference image and the corrected image in each case. The obtained results were also verified statistically using appropriate t-tests in each set. The proposed method exhibited superior performance compared with the well-established method, in terms of the contrast root mean square difference between the reference and the corrected images. After suitable statistical analysis, it was deduced that the performance advantage of the proposed approach was statistically significant.

Objectives: In this paper, the enhanced hexagonal centre-based inner search (EHCBIS) algorithm, for automatic point correspondence, is proposed for dental image registration., Methods: The presented algorithm is incorporated within a general registration scheme, which is based on extracting a set of candidate points on the reference image, finding their corresponding points in the image to be transformed (float image) using the proposed algorithm and applying a suitable geometrical transformation towards automatic registration. The performance of the proposed algorithm is evaluated against three well-known methods for automatic correspondence, the self-organizing maps, the automatic extraction of corresponding points and the trimmed iterative closest point method, in terms of registration accuracy., Results: Qualitative and quantitative results on registering 123 dental pairs show that the proposed algorithm outperforms the other methods for automatic correspondence with or without the presence of noise., Conclusions: The EHCBIS method is capable of defining automatically corresponding points in dental image pairs. It can be incorporated within a general scheme for point-based registration of dental radiographs acquired with or without rigorous a priori standardization. The applied projective transformation provides a reliable model for registering intraoral radiographs. The methodology does not require any segmentation prior to alignment providing subtraction radiographs and fused images for clinical evaluation regarding the evolution of a disease or the response to a therapeutic scheme.

In this paper, the relation between retinal vessel diameters and glaucoma by means of advanced image processing techniques is examined. Eighteen (18) patients with ocular hypertension who converted to early glaucoma (converters) and nineteen (19) patients with ocular hypertension who remain stable (non-converters) were imaged with a fundus camera at regular intervals. The first acquired image serves as the reference image, which is compared to each follow-up image. The proposed methodology involves the extraction of vessel centerlines by means of differential calculus, the geometrical alignment (registration) of the images using the chamfer matching algorithm, the estimation of vessel diameters by fitting a Gaussian function to intensity profiles. The statistical analysis of the variations of the vessels diameters revealed a significant difference between the two populations. This difference indicates a probable association between glaucoma and variations of the vessel diameter.

In this paper, an algorithm for automatic point correspondence is proposed towards retinal image registration. Given a pair of corresponding retinal images and a set of bifurcations or other salient points in one of the images, the algorithm detects effectively the set of corresponding points in the second image, by exploiting the properties of Kohonen's Self Organizing Maps and embedding them in a stochastic optimization procedure. The proposed algorithm was tested on 20 unimodal retinal pairs and the obtained results show an enhanced performance in terms of accuracy and robustness compared to the existing algorithm, on which it is based.

In this paper, an automatic method for registering multimodal retinal images is presented. The method consists of three steps: the vessel centerline detection and extraction of bifurcation points only in the reference image, the automatic correspondence of bifurcation points in the two images using a novel implementation of the Self Organized Maps (SOMs) and the extraction of the parameters of the affine transform using the previously obtained correspondences. The proposed registration algorithm was tested on 24 multimodal retinal pairs and the obtained results show an advantageous performance in terms of accuracy with respect to the manual registration.

In this paper a modified version of the center-based inner search algorithm, the enhanced hexagonal center-based inner search algorithm, for automatic point correspondence is proposed towards dental registration. The modified algorithm is incorporated within a general registration scheme which is based on extracting a set of candidate points on the reference image, finding their corresponding points in the other image (float image) using the proposed algorithm and applying an affine geometrical transformation towards automatic registration. The performance of the proposed algorithm is evaluated against a well-known method for automatic correspondence, in terms of the registration accuracy. Qualitative and quantitative results on registering 24 dental pairs showed that the proposed algorithm outperforms the other method for automatic correspondence.

Objectives: To establish a digital subtraction radiography scheme for aligning clinical in vivo radiographs based on the implementations of an automatic geometric registration method and a contrast correction technique., Methods: Thirty-five pairs of in vivo dental radiographs from four clinical studies were used in this work. First, each image pair was automatically aligned by applying a multiresolution registration strategy using the affine transformation followed by the implementation of the projective transformation at full resolution. Then, a contrast correction technique was applied in order to produce subtraction radiographs and fused images for further clinical evaluation. The performance of the proposed registration method was assessed against a manual method based on the projective transformation., Results: The qualitative assessment of the experiments based on visual inspection has shown advantageous performance of the proposed automatic registration method against the manual method. Furthermore, the quantitative analysis showed statistical difference in terms of the root mean square (RMS) error estimated over the whole images and specific regions of interest., Conclusions: The proposed automatic geometric registration method is capable of aligning radiographs acquired with or without rigorous a priori standardization. The methodology is pixel-based and does not require the application of any segmentation process prior to alignment. The employed projective transformation provides a reliable model for registering intraoral radiographs. The implemented contrast correction technique sequentially applied provides subtraction radiographs and fused images for clinical evaluation regarding the evolution of a disease or the response to a therapeutic scheme.

In this paper a World Wide Web (WWW)-based medical system, called MITIS, is designed and developed for the management and processing of obstetrical, gynecological and radiological medical data. The system records all the necessary medical information in terms of patient data, examinations, and operations and provides the user-expert with advanced image processing tools for the manipulation, processing and storage of ultrasound and mammographic images. The system can be installed in a hospital's Local Area Network (LAN) where it can access picture archival and communication systems (PACS) servers (if available), or any other server within the radiology department, for image archiving and retrieval, based on the digital imaging and communication in medicine (DICOM) 3.0 protocol, over TCP/IP and also it is accessible to external physicians via the hospital's Internet connection. MITIS is composed as a set of independent WWW modules (ISAPI server extension dlls) and a Win32 application (COM+ server) for mammography image processing and evaluation.

In this paper, a pilot study regarding carotid atherosclerotic plaque instability using B-mode ultrasound (US) images was carried out. The fractal dimension of plaques obtained from ten symptomatic subjects (i.e., subjects having experienced neurological symptoms) as well as from nine asymptomatic subjects, was estimated using a novel method, called the kth nearest neighbour (KNN) method. The results indicated a significant difference, as per the fractal dimension, between the two groups, providing a significantly lower value for the asymptomatic group. Moreover, the phase of the cardiac cycle (systole/diastole) during which the fractal dimension was estimated had no systematic effect on the calculations. The fractal dimension of the plaques was also estimated using a well-known method, namely the box-counting (BC) method. No significant differences between the two groups, as per the fractal dimension, were observed using the BC method. The presented pilot study suggests that the fractal dimension, estimated by the proposed method, could be used as a single determinant for the discrimination of symptomatic and asymptomatic subjects., (Copyright 2002 World Federation for Ultrasound in Medicine & Biology)