2,689 results on '"Anders, F"'
Search Results
102. Extinction Maps towards the Milky Way Bulge: 2D and 3D Tests with APOGEE
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Schultheis, M., Zasowski, G., Prieto, C. Allende, Anders, F., Beaton, R. L., Beers, T. C., Bizyaev, D., Chiappini, C., Frinchaboy, P. M., Garcia-Perez, A. E., Ge, J., Hearty, F., Holtzman, J., Majewski, S. R., Muna, D., Nidever, D., Shetrone, M., and Schneider, D. P.
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Astrophysics - Astrophysics of Galaxies - Abstract
Galactic interstellar extinction maps are powerful and necessary tools for Milky Way structure and stellar population analyses, particularly toward the heavily-reddened bulge and in the midplane. However, due to the difficulty of obtaining reliable extinction measures and distances for a large number of stars that are independent of these maps, tests of their accuracy and systematics have been limited. Our goal is to assess a variety of photometric stellar extinction estimates, including both 2D and 3D extinction maps, using independent extinction measures based on a large spectroscopic sample of stars towards the Milky Way bulge. We employ stellar atmospheric parameters derived from high-resolution $H$-band APOGEE spectra, combined with theoretical stellar isochrones, to calculate line-of-sight extinction and distances for a sample of more than 2400 giants towards the Milky Way bulge. We compare these extinction values to those predicted by individual near-IR and near+mid-IR stellar colors, 2D bulge extinction maps and 3D extinction maps. The long baseline, near+mid-IR stellar colors are, on average, the most accurate predictors of the APOGEE extinction estimates, and the 2D and 3D extinction maps derived from different stellar populations along different sightlines show varying degrees of reliability. We present the results of all of the comparisons and discuss reasons for the observed discrepancies. We also demonstrate how the particular stellar atmospheric models adopted can have a strong impact on this type of analysis, and discuss related caveats., Comment: 10 pages, 12 pages, accepted for publication in AJ
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- 2014
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103. Exercise therapy and patient education versus intra-articular saline injections in the treatment of knee osteoarthritis: an evidence-based protocol for an open-label randomised controlled trial (the DISCO trial)
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Elisabeth Bandak, Anders F. Overgaard, Lars Erik Kristensen, Karen Ellegaard, Jørgen Guldberg-Møller, Cecilie Bartholdy, David J. Hunter, Roy D. Altman, Robin Christensen, Henning Bliddal, and Marius Henriksen
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Knee osteoarthritis ,Exercise ,Education ,Intra-articular saline injection ,Placebo ,Open-label ,Medicine (General) ,R5-920 - Abstract
Abstract Background Knee osteoarthritis (OA) is a highly prevalent musculoskeletal condition causing pain, physical disability, and reduced quality of life. Exercise and patient education are non-pharmacological interventions for knee OA unanimously recommended as first-line treatments based on extensive research evidence. However, none of the numerous randomised controlled trials of exercise and education for knee OA has used adequate sham/placebo comparison groups because the ‘active’ ingredients are unknown. Designing and executing an adequate and ‘blindable placebo’ version of an exercise and education intervention is impossible. Therefore, using an open-label study design, this trial compares the efficacy of a widely used ‘state-of-art’ exercise and education intervention (Good Life with osteoarthritis in Denmark; GLAD) with presumably inert intra-articular saline injections on improvement in knee pain in patients with knee OA. Methods In this open-label randomised trial, we will include 200 patients with radiographically verified OA of the knee and randomly allocate them to one of two interventions: (i) 8 weeks of exercise and education (GLAD) or (ii) Intra-articular injections of 5 ml isotonic saline every second week for a total of 4 injections. Outcomes are taken at baseline, after 8 weeks of treatment (week 9; primary endpoint) and after an additional 4 weeks of follow-up (week 12). The primary outcome is change from baseline in the Knee Injury and Osteoarthritis Outcome Score questionnaire (KOOS) pain subscale score. Secondary outcomes include the Physical function in Activities of Daily Living, Symptoms, and Knee-related Quality of Life subscales of the KOOS, the patients’ global assessment of disease impact, physical performance tests, and presence of knee joint swelling. Discussion This current trial compares a presumably active treatment (GLAD) with a presumably inert treatment (IA saline injections). Both study interventions have well-established and anticipated similar effects on knee OA symptoms, but the underlying mechanisms are unknown. The interpretation of the results of this trial will likely be difficult and controversial but will contribute to a better understanding of the bias introduced in the effect estimation of classically unblindable exercise and education interventions for knee OA. Trial registration www.ClinicalTrials.gov NCT03843931 . Prospectively registered on 18 February 2019.
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- 2021
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104. Caught in broad daylight : Topographic constraints of zooplankton depth distributions
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Aarflot, Johanna M., Aksnes, Dag L., Opdal, Anders F., Skjoldal, Hein Rune, and Fiksen, Øyvind
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- 2019
105. Salivary Microbiota and Host-Inflammatory Responses in Periodontitis Affected Individuals With and Without Rheumatoid Arthritis
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Kaja Eriksson, Anna Lundmark, Luis F. Delgado, Yue O. O. Hu, Guozhong Fei, Linkiat Lee, Carina Fei, Anca I. Catrina, Leif Jansson, Anders F. Andersson, and Tülay Yucel-Lindberg
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periodontitis ,rheumatoid arthritis ,microbiota ,saliva ,host inflammatory mediators ,cytokines ,Microbiology ,QR1-502 - Abstract
ObjectivesPeriodontitis and rheumatoid arthritis (RA) are two widespread chronic inflammatory diseases with a previously suggested association. The objective of the current study was to compare the oral microbial composition and host´s inflammatory mediator profile of saliva samples obtained from subjects with periodontitis, with and without RA, as well as to predict biomarkers, of bacterial pathogens and/or inflammatory mediators, for classification of samples associated with periodontitis and RA.MethodsSalivary samples were obtained from 53 patients with periodontitis and RA and 48 non-RA with chronic periodontitis. The microbial composition was identified using 16S rRNA gene sequencing and compared across periodontitis patients with and without RA. Levels of inflammatory mediators were determined using a multiplex bead assay, compared between the groups and correlated to the microbial profile. The achieved data was analysed using PCoA, DESeq2 and two machine learning algorithms, OPLS-DA and sPLS-DA.ResultsDifferential abundance DESeq2 analyses showed that the four most highly enriched (log2 FC >20) amplicon sequence variants (ASVs) in the non-RA periodontitis group included Alloprevotella sp., Prevotella sp., Haemophilus sp., and Actinomyces sp. whereas Granulicatella sp., Veillonella sp., Megasphaera sp., and Fusobacterium nucleatum were the most highly enriched ASVs (log2 FC >20) in the RA group. OPLS-DA with log2 FC analyses demonstrated that the top ASVs with the highest importance included Vampirovibrio sp. having a positive correlation with non-RA group, and seven ASVs belonging to Sphingomonas insulae, Sphingobium sp., Novosphingobium aromaticivorans, Delftia acidovorans, Aquabacterium spp. and Sphingomonas echinoides with a positive correlation with RA group. Among the detected inflammatory mediators in saliva samples, TWEAK/TNFSF12, IL-35, IFN-α2, pentraxin-3, gp130/sIL6Rb, sIL-6Ra, IL-19 and sTNF-R1 were found to be significantly increased in patients with periodontitis and RA compared to non-RA group with periodontitis. Moreover, correlations between ASVs and inflammatory mediators using sPLS-DA analysis revealed that TWEAK/TNFSF12, pentraxin-3 and IL-19 were positively correlated with the ASVs Sphingobium sp., Acidovorax delafieldii, Novosphingobium sp., and Aquabacterium sp.ConclusionOur results suggest that the combination of microbes and host inflammatory mediators could be more efficient to be used as a predictable biomarker associated with periodontitis and RA, as compared to microbes and inflammatory mediators alone.
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- 2022
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106. New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system
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Bittner, Meriel J, Bannon, Catherine C, Rowland, Elden, Sundh, John, Bertrand, Erin M, Andersson, Anders F, Paerl, Ryan W, Riemann, Lasse, Bittner, Meriel J, Bannon, Catherine C, Rowland, Elden, Sundh, John, Bertrand, Erin M, Andersson, Anders F, Paerl, Ryan W, and Riemann, Lasse
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Vitamin B1 (thiamin, B1) is an essential micronutrient for cells, yet intriguingly in aquatic systems most bacterioplankton are unable to synthesize it de novo (auxotrophy), requiring an exogenous source. Cycling of this valuable metabolite in aquatic systems has not been fully investigated and vitamers (B1-related compounds) have only begun to be measured and incorporated into the B1 cycle. Here, we identify potential key producers and consumers of B1 and gain new insights into the dynamics of B1 cycling through measurements of B1 and vitamers (HMP: 4-amino-5-hydroxymethyl-2-methylpyrimidine, HET: 4-methyl-5-thiazoleethanol, FAMP: N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine) in the particulate and dissolved pool in a temperate coastal system. Dissolved B1 was not the primary limiting nutrient for bacterial production and was relatively stable across seasons with concentrations ranging from 74–117 pM, indicating a balance of supply and demand. However, vitamer concentration changed markedly with season as did transcripts related to vitamer salvage and transport suggesting use of vitamers by certain bacterioplankton, e.g. Pelagibacterales. Genomic and transcriptomic analyses showed that up to 78% of the bacterioplankton taxa were B1 auxotrophs. Notably, de novo B1 production was restricted to a few abundant bacterioplankton (e.g. Vulcanococcus, BACL14 (Burkholderiales), Verrucomicrobiales) across seasons. In summer, abundant picocyanobacteria were important putative B1 sources, based on transcriptional activity, leading to an increase in the B1 pool. Our results provide a new dynamic view of the players and processes involved in B1 cycling over time in coastal waters, and identify specific priority populations and processes for future study.
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- 2024
107. Temperature, sediment resuspension, and salinity drive the prevalence of Vibrio vulnificus in the coastal Baltic Sea
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Fernández-juárez, Víctor, Riedinger, David J., Gusmao, Joao Bosco, Delgado-zambrano, Luis Fernando, Coll-garcía, Guillem, Papazachariou, Vasiliki, Herlemann, Daniel P. R., Pansch, Christian, Andersson, Anders F., Labrenz, Matthias, Riemann, Lasse, Fernández-juárez, Víctor, Riedinger, David J., Gusmao, Joao Bosco, Delgado-zambrano, Luis Fernando, Coll-garcía, Guillem, Papazachariou, Vasiliki, Herlemann, Daniel P. R., Pansch, Christian, Andersson, Anders F., Labrenz, Matthias, and Riemann, Lasse
- Abstract
The number of Vibrio-related infections in humans, e.g., by Vibrio vulnificus, has increased along the coasts of the Baltic Sea. Due to climate change, vibriosis risk is expected to increase. It is, therefore, pertinent to design a strategy for mitigation of the vibriosis threat in the Baltic Sea area, but a prerequisite is to identify the environmental conditions promoting the occurrence of pathogenic Vibrio spp., like V. vulnificus. To address this, we sampled three coastal Baltic sites in Finland, Germany, and Denmark with salinities between 6 and 21 from May to October 2022. The absolute and relative abundances of Vibrio spp. and V. vulnificus in water were compared to environmental conditions, including the presence of the eelgrass Zostera marina, which has been suggested to reduce pathogenic Vibrio species abundance. In the water column, V. vulnificus only occurred at the German station between July and August at salinity 8.1–11.2. Temperature and phosphate (PO43–) were identified as the most influencing factors for Vibrio spp. and V. vulnificus. The accumulation of Vibrio spp. in the sediment and the co-occurrence with sediment bacteria in the water column indicate that sediment resuspension contributed to V. vulnificus abundance. Interestingly, V. vulnificus co-occurred with specific cyanobacteria taxa, as well as specific bacteria associated with cyanobacteria. Although we found no reduction in Vibrio spp. or V. vulnificus associated with eelgrass beds, our study underscores the importance of extended heatwaves and sediment resuspension, which may elevate the availability of PO43–, for Vibrio species levels at intermediate salinities in the Baltic Sea., The number of Vibrio-related infections in humans, e.g., by Vibrio vulnificus, has increased along the coasts of the Baltic Sea. Due to climate change, vibriosis risk is expected to increase. It is, therefore, pertinent to design a strategy for mitigation of the vibriosis threat in the Baltic Sea area, but a prerequisite is to identify the environmental conditions promoting the occurrence of pathogenic Vibrio spp., like V. vulnificus. To address this, we sampled three coastal Baltic sites in Finland, Germany, and Denmark with salinities between 6 and 21 from May to October 2022. The absolute and relative abundances of Vibrio spp. and V. vulnificus in water were compared to environmental conditions, including the presence of the eelgrass Zostera marina, which has been suggested to reduce pathogenic Vibrio species abundance. In the water column, V. vulnificus only occurred at the German station between July and August at salinity 8.1–11.2. Temperature and phosphate (PO43–) were identified as the most influencing factors for Vibrio spp. and V. vulnificus. The accumulation of Vibrio spp. in the sediment and the co-occurrence with sediment bacteria in the water column indicate that sediment resuspension contributed to V. vulnificus abundance. Interestingly, V. vulnificus co-occurred with specific cyanobacteria taxa, as well as specific bacteria associated with cyanobacteria. Although we found no reduction in Vibrio spp. or V. vulnificus associated with eelgrass beds, our study underscores the importance of extended heatwaves and sediment resuspension, which may elevate the availability of PO43–, for Vibrio species levels at intermediate salinities in the Baltic Sea.
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- 2024
108. A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
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Latz, Meike, Andersson, Agneta, Brugel, Sonia, Hedblom, Mikael, Jurdzinski, Krzysztof T., Karlson, Bengt, Lindh, Markus, Lycken, Jenny, Torstensson, Anders, Andersson, Anders F., Latz, Meike, Andersson, Agneta, Brugel, Sonia, Hedblom, Mikael, Jurdzinski, Krzysztof T., Karlson, Bengt, Lindh, Markus, Lycken, Jenny, Torstensson, Anders, and Andersson, Anders F.
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The Baltic Sea is one of the largest brackish water environments on earth and is characterised by pronounced physicochemical gradients and seasonal dynamics. Although the Baltic Sea has a long history of microscopy-based plankton monitoring, DNA-based metabarcoding has so far mainly been limited to individual transect cruises or time-series of single stations. Here we report a dataset covering spatiotemporal variation in prokaryotic and eukaryotic microbial communities and physicochemical parameters. Within 13-months between January 2019 and February 2020, 341 water samples were collected at 22 stations during monthly cruises along the salinity gradient. Both salinity and seasonality are strongly reflected in the data. Since the dataset was generated with both metabarcoding and microscopy-based methods, it provides unique opportunities for both technical and ecological analyses, and is a valuable biodiversity reference for future studies, in the prospect of climate change., QC 20240115
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- 2024
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109. Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton
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Grujčić, Vesna, Saarenpää, Sami, Sundh, John, Sennblad, Bengt, Norgren, Benjamin, Latz, Meike, Giacomello, Stefania, Foster, Rachel A., Andersson, Anders F., Grujčić, Vesna, Saarenpää, Sami, Sundh, John, Sennblad, Bengt, Norgren, Benjamin, Latz, Meike, Giacomello, Stefania, Foster, Rachel A., and Andersson, Anders F.
- Abstract
Single-cell transcriptomics has the potential to provide novel insights into poorly studied microbial eukaryotes. Although several such technologies are available and benchmarked on mammalian cells, few have been tested on protists. Here, we applied a microarray single-cell sequencing (MASC-seq) technology, that generates microscope images of cells in parallel with capturing their transcriptomes, on three species representing important plankton groups with different cell structures; the ciliate Tetrahymena thermophila, the diatom Phaeodactylum tricornutum, and the dinoflagellate Heterocapsa sp. Both the cell fixation and permeabilization steps were adjusted. For the ciliate and dinoflagellate, the number of transcripts of microarray spots with single cells were significantly higher than for background spots, and the overall expression patterns were correlated with that of bulk RNA, while for the much smaller diatom cells, it was not possible to separate single-cell transcripts from background. The MASC-seq method holds promise for investigating "microbial dark matter”, although further optimizations are necessary to increase the signal-to-noise ratio., QC 20240201
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- 2024
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110. DNA-streckkodning av marina växtplankton : Ett nytt verktyg i miljöövervakningen
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Andersson, Agneta, Karlson, Bengt, Andersson, Anders F, Torstensson, Anders, Brugel, Sonia, Latz,, Meike AC, Jurdzinski, Krzysztof T, Hedblom, Mikael, Lycken, Jenny, Lindh, Markus, Andersson, Agneta, Karlson, Bengt, Andersson, Anders F, Torstensson, Anders, Brugel, Sonia, Latz,, Meike AC, Jurdzinski, Krzysztof T, Hedblom, Mikael, Lycken, Jenny, and Lindh, Markus
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Växtplankton utgör grunden i den marina näringsväven och används världen över för att bestämma miljöstatus i hav och sjöar. De ingår exempelvis som en kvalitetsfaktor i EU:s vattendirektiv och havsmiljödirektiv. Det finns långa tidsserier av växtplanktonövervakning där analyserna utförts med mikroskopi. Det sker nu en snabb internationell utveckling av DNA-metoder för att övervaka växtplankton. Målsättningen med detta projekt var att utveckla en praktisk och robust DNA analysmetod som kan implementeras i svensk marin miljöövervakning. Vårt tillvägagångssätt var att följa med på ordinarie marina miljöövervakningsexpeditioner under ett års tid (2019–2020) och ta parallella havsvattenprov för så kallad DNA-streckkodning av växtplankton. Sammanlagt tog vi prov vid 19 övervakningsstationer som var spridda från Bottenviken i norr till Skagerrak i söder. Provtagningsfrekvensen var cirka 1 gång per månad. Praktiska metoder utarbetades för fältprovtagning, DNA-extraktion, sekvensering, bioinformatisk analys och taxonomisk annotering. Vi har även tagit fram system för datahantering hos nationell datavärd och gett förslag på en ny datatyp för nationellt datavärdskap för marinbiologi och oceanografi vid Svenskt Oceanografiskt Datacentrum (https://sharkweb. smhi.se/hamta-data/). En viktig del har varit att jämföra resultaten av DNA-streckkodning och mikroskopi. Resultaten visar att DNA-streckkodning ger ungefär dubbelt så högt biodiversitetsmått än mikroskopering, även om det skiljer sig åt mellan olika grupper av växtplankton. För att undersöka om DNA-streckkodning kan användas för kvantitativ analys tillsatte vi en intern standard till proverna bestående av syntetiskt DNA, men eftersom resultatet varierade så behöver man arbeta vidare med detta. Den relativa fördelningen av vanliga eukaryota växtplanktongrupper visade sig ha relativt bra överensstämmelse mellan DNA-streckkodning och mikroskopimåttet kolbiomassa, medan biovolym och abundans skiljde sig åt mer. DNA-streckko
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- 2024
111. Discovery of a dormant 33 solar-mass black hole in pre-release Gaia astrometry
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Panuzzo, P., Mazeh, T., Arenou, F., Holl, B., Caffau, E., Jorissen, A., Babusiaux, C., Gavras, P., Sahlmann, J., Bastian, U., Wyrzykowski, Ł., Eyer, L., Leclerc, N., Bauchet, N., Bombrun, A., Mowlavi, N., Seabroke, G. M., Teyssier, D., Balbinot, E., Helmi, A., Brown, A. G.A., Vallenari, A., Prusti, T., De Bruijne, J. H.J., Barbier, A., Biermann, M., Creevey, O. L., Ducourant, C., Evans, D. W., Guerra, R., Hutton, A., Jordi, C., Klioner, S. A., Lammers, U., Lindegren, L., Luri, X., Mignard, F., Nicolas, C., Randich, S., Sartoretti, P., Smiljanic, R., Tanga, P., Walton, N. A., Aerts, C., Bailer-Jones, C. A.L., Cropper, M., Drimmel, R., Jansen, F., Katz, D., Lattanzi, M. G., Soubiran, C., Thévenin, F., Van Leeuwen, F., Andrae, R., Audard, M., Bakker, J., Blomme, R., Castañeda, J., De Angeli, F., Fabricius, C., Fouesneau, M., Frémat, Y., Galluccio, L., Guerrier, A., Heiter, U., Masana, E., Messineo, R., Nienartowicz, K., Pailler, F., Riclet, F., Roux, W., Sordo, R., Gracia-Abril, G., Portell, J., Altmann, M., Benson, K., Berthier, J., Burgess, P. W., Busonero, D., Busso, G., Cacciari, C., Cánovas, H., Carrasco, J. M., Carry, B., Cellino, A., Cheek, N., Clementini, G., Damerdji, Y., Davidson, M., De Teodoro, P., Delchambre, L., Della Oro, A., Fraile Garcia, E., Garabato, D., García-Lario, P., Haigron, R., Hambly, N. C., Harrison, D. L., Hatzidimitriou, D., Hernández, J., Hestroffer, D., Hodgkin, S. T., Jamal, S., Jevardat De Fombelle, G., Jordan, S., Krone-Martins, A., Lanzafame, A. C., Löffler, W., Lorca, A., Marchal, O., Marrese, P. M., Moitinho, A., Muinonen, K., Nuñez Campos, M., Oreshina-Slezak, I., Osborne, P., Pancino, E., Pauwels, T., Recio-Blanco, A., Riello, M., Rimoldini, L., Robin, A. C., Roegiers, T., Sarro, L. M., Schultheis, M., Smith, M., Sozzetti, A., Utrilla, E., Van Leeuwen, M., Weingrill, K., Abbas, U., Ábrahám, P., Abreu Aramburu, A., Ahmed, S., Altavilla, G., Álvarez, M. A., Anders, F., Anderson, R. I., Anglada Varela, E., Antoja, T., Baig, S., Baines, D., Baker, S. G., Balaguer-Núñez, L., Balog, Z., Barache, C., Barros, M., Barstow, M. A., Bartolomé, S., Bashi, D., Bassilana, J. L., Baudeau, N., Becciani, U., Bedin, L. R., Bellas-Velidis, I., Bellazzini, M., Beordo, W., Bernet, M., Bertolotto, C., Bertone, S., Bianchi, L., Binnenfeld, A., Blanco-Cuaresma, S., Bland-Hawthorn, J., Blazere, A., Boch, T., Bossini, D., Bouquillon, S., Bragaglia, A., Braine, J., Bratsolis, E., Breedt, E., Bressan, A., Brouillet, N., Brugaletta, E., Bucciarelli, B., Butkevich, A. G., Buzzi, R., Camut, A., Cancelliere, R., Cantat-Gaudin, T., Capilla Guilarte, D., Carballo, R., Carlucci, T., Carnerero, M. I., Carretero, J., Carton, S., Casamiquela, L., Casey, A., Castellani, M., Castro-Ginard, A., Ceraj, L., Cesare, V., Charlot, P., Chaudet, C., Chemin, L., Chiavassa, A., Chornay, N., Chosson, D., Cooper, W. J., Cornez, T., Cowell, S., Crosta, M., Crowley, C., Cruz Reyes, M., Dafonte, C., Dal Ponte, M., David, M., De Laverny, P., De Luise, F., De March, R., De Torres, A., Del Peloso, E. F., Delbo, M., Delgado, A., Delisle, J. B., Demouchy, C., Denis, E., Dharmawardena, T. E., Di Giacomo, F., Diener, C., Distefano, E., Dolding, C., Dsilva, K., Enke, H., Fabre, C., Fabrizio, M., Faigler, S., Fatoviä, M., Fedorets, G., Fernández-Hernández, J., Fernique, P., Figueras, F., Fouron, C., Fragkoudi, F., Gai, M., Galinier, M., Garcia-Serrano, A., García-Torres, M., Garofalo, A., Gerlach, E., Geyer, R., Giacobbe, P., Gilmore, G., Girona, S., Giuffrida, G., Gomboc, A., Gomez, A., González-Santamaría, I., Gosset, E., Granvik, Mikael, Gregori Barrera, V., Gutiérrez-Sánchez, R., Haywood, M., Helmer, A., Hidalgo, S. L., Hilger, T., Hobbs, D., Hottier, C., Huckle, H. E., Jiménez-Arranz, Ó., Juaristi Campillo, J., Kaczmarek, Z., Kervella, P., Khanna, S., Kontizas, M., Kordopatis, G., Korn, A. J., Kóspál, Á., Kostrzewa-Rutkowska, Z., Kruszyåà  Ska, K., Kun, M., Lambert, S., Lanza, A. F., Lebreton, Y., Lebzelter, T., Leccia, S., Lecoutre, G., Liao, S., Liberato, L., Licata, E., Livanou, E., Lobel, A., López-Miralles, J., Loup, C., Madarász, M., Mahy, L., Mann, R. G., Manteiga, M., Marcellino, C. P., Marchant, J. M., Marconi, M., Marín Pina, D., Marinoni, S., Marshall, D. J., Martín Lozano, J., Martin Polo, L., Martín-Fleitas, J. M., Marton, G., Mascarenhas, D., Masip, A., Mastrobuono-Battisti, A., McMillan, P. J., Meichsner, J., Merc, J., Messina, S., Millar, N. R., Mints, A., Mohamed, D., Molina, D., Molinaro, R., Molnár, L., Monguió, M., Montegriffo, P., Monti, L., Mora, A., Morbidelli, R., Morris, D., Mudimadugula, R., Muraveva, T., Musella, I., Nagy, Z., Nardetto, N., Navarrete, C., Oh, S., Ordenovic, C., Orenstein, O., Pagani, C., Pagano, I., Palaversa, L., Palicio, P. A., Pallas-Quintela, L., Pawlak, M., Penttilä, A., Pesciullesi, P., Pinamonti, M., Plachy, E., Planquart, L., Plum, G., Poggio, E., Pourbaix, D., Price-Whelan, A. M., Pulone, L., Rabin, V., Rainer, M., Raiteri, C. M., Ramos, P., Ramos-Lerate, M., Ratajczak, M., Re Fiorentin, P., Regibo, S., Reylé, C., Ripepi, V., Riva, A., Rix, H. W., Rixon, G., Robert, G., Robichon, N., Robin, C., Romero-Gómez, M., Rowell, N., Ruz Mieres, D., Rybicki, K. A., Sadowski, G., Sagristà Sellés, A., Sanna, N., Santoveña, R., Sarasso, M., Sarmiento, M. H., Sarrate Riera, C., Sciacca, E., Ségransan, D., Semczuk, M., Shahaf, S., Siebert, A., Slezak, E., Smart, R. L., Snaith, O. N., Solano, E., Solitro, F., Souami, D., Souchay, J., Spitoni, E., Spoto, F., Squillante, L. A., Steele, I. A., Steidelmüller, H., Surdej, J., Szabados, L., Taris, F., Taylor, M. B., Teixeira, R., Tepper-Garcia, T., Thuillot, W., Tolomei, L., Tonello, N., Torra, F., Torralba Elipe, G., Trabucchi, M., Trentin, E., Tsantaki, M., Turon, C., Ulla, A., Unger, N., Valtchanov, I., Vanel, O., Vecchiato, A., Vicente, D., Villar, E., Weiler, M., Zhao, H., Zorec, J., Zucker, S., Župiä, A., Zwitter, T., Panuzzo, P., Mazeh, T., Arenou, F., Holl, B., Caffau, E., Jorissen, A., Babusiaux, C., Gavras, P., Sahlmann, J., Bastian, U., Wyrzykowski, Ł., Eyer, L., Leclerc, N., Bauchet, N., Bombrun, A., Mowlavi, N., Seabroke, G. M., Teyssier, D., Balbinot, E., Helmi, A., Brown, A. G.A., Vallenari, A., Prusti, T., De Bruijne, J. H.J., Barbier, A., Biermann, M., Creevey, O. L., Ducourant, C., Evans, D. W., Guerra, R., Hutton, A., Jordi, C., Klioner, S. A., Lammers, U., Lindegren, L., Luri, X., Mignard, F., Nicolas, C., Randich, S., Sartoretti, P., Smiljanic, R., Tanga, P., Walton, N. A., Aerts, C., Bailer-Jones, C. A.L., Cropper, M., Drimmel, R., Jansen, F., Katz, D., Lattanzi, M. G., Soubiran, C., Thévenin, F., Van Leeuwen, F., Andrae, R., Audard, M., Bakker, J., Blomme, R., Castañeda, J., De Angeli, F., Fabricius, C., Fouesneau, M., Frémat, Y., Galluccio, L., Guerrier, A., Heiter, U., Masana, E., Messineo, R., Nienartowicz, K., Pailler, F., Riclet, F., Roux, W., Sordo, R., Gracia-Abril, G., Portell, J., Altmann, M., Benson, K., Berthier, J., Burgess, P. W., Busonero, D., Busso, G., Cacciari, C., Cánovas, H., Carrasco, J. M., Carry, B., Cellino, A., Cheek, N., Clementini, G., Damerdji, Y., Davidson, M., De Teodoro, P., Delchambre, L., Della Oro, A., Fraile Garcia, E., Garabato, D., García-Lario, P., Haigron, R., Hambly, N. C., Harrison, D. L., Hatzidimitriou, D., Hernández, J., Hestroffer, D., Hodgkin, S. T., Jamal, S., Jevardat De Fombelle, G., Jordan, S., Krone-Martins, A., Lanzafame, A. C., Löffler, W., Lorca, A., Marchal, O., Marrese, P. M., Moitinho, A., Muinonen, K., Nuñez Campos, M., Oreshina-Slezak, I., Osborne, P., Pancino, E., Pauwels, T., Recio-Blanco, A., Riello, M., Rimoldini, L., Robin, A. C., Roegiers, T., Sarro, L. M., Schultheis, M., Smith, M., Sozzetti, A., Utrilla, E., Van Leeuwen, M., Weingrill, K., Abbas, U., Ábrahám, P., Abreu Aramburu, A., Ahmed, S., Altavilla, G., Álvarez, M. A., Anders, F., Anderson, R. I., Anglada Varela, E., Antoja, T., Baig, S., Baines, D., Baker, S. G., Balaguer-Núñez, L., Balog, Z., Barache, C., Barros, M., Barstow, M. A., Bartolomé, S., Bashi, D., Bassilana, J. L., Baudeau, N., Becciani, U., Bedin, L. R., Bellas-Velidis, I., Bellazzini, M., Beordo, W., Bernet, M., Bertolotto, C., Bertone, S., Bianchi, L., Binnenfeld, A., Blanco-Cuaresma, S., Bland-Hawthorn, J., Blazere, A., Boch, T., Bossini, D., Bouquillon, S., Bragaglia, A., Braine, J., Bratsolis, E., Breedt, E., Bressan, A., Brouillet, N., Brugaletta, E., Bucciarelli, B., Butkevich, A. G., Buzzi, R., Camut, A., Cancelliere, R., Cantat-Gaudin, T., Capilla Guilarte, D., Carballo, R., Carlucci, T., Carnerero, M. I., Carretero, J., Carton, S., Casamiquela, L., Casey, A., Castellani, M., Castro-Ginard, A., Ceraj, L., Cesare, V., Charlot, P., Chaudet, C., Chemin, L., Chiavassa, A., Chornay, N., Chosson, D., Cooper, W. J., Cornez, T., Cowell, S., Crosta, M., Crowley, C., Cruz Reyes, M., Dafonte, C., Dal Ponte, M., David, M., De Laverny, P., De Luise, F., De March, R., De Torres, A., Del Peloso, E. F., Delbo, M., Delgado, A., Delisle, J. B., Demouchy, C., Denis, E., Dharmawardena, T. E., Di Giacomo, F., Diener, C., Distefano, E., Dolding, C., Dsilva, K., Enke, H., Fabre, C., Fabrizio, M., Faigler, S., Fatoviä, M., Fedorets, G., Fernández-Hernández, J., Fernique, P., Figueras, F., Fouron, C., Fragkoudi, F., Gai, M., Galinier, M., Garcia-Serrano, A., García-Torres, M., Garofalo, A., Gerlach, E., Geyer, R., Giacobbe, P., Gilmore, G., Girona, S., Giuffrida, G., Gomboc, A., Gomez, A., González-Santamaría, I., Gosset, E., Granvik, Mikael, Gregori Barrera, V., Gutiérrez-Sánchez, R., Haywood, M., Helmer, A., Hidalgo, S. L., Hilger, T., Hobbs, D., Hottier, C., Huckle, H. E., Jiménez-Arranz, Ó., Juaristi Campillo, J., Kaczmarek, Z., Kervella, P., Khanna, S., Kontizas, M., Kordopatis, G., Korn, A. J., Kóspál, Á., Kostrzewa-Rutkowska, Z., Kruszyåà  Ska, K., Kun, M., Lambert, S., Lanza, A. F., Lebreton, Y., Lebzelter, T., Leccia, S., Lecoutre, G., Liao, S., Liberato, L., Licata, E., Livanou, E., Lobel, A., López-Miralles, J., Loup, C., Madarász, M., Mahy, L., Mann, R. G., Manteiga, M., Marcellino, C. P., Marchant, J. M., Marconi, M., Marín Pina, D., Marinoni, S., Marshall, D. J., Martín Lozano, J., Martin Polo, L., Martín-Fleitas, J. M., Marton, G., Mascarenhas, D., Masip, A., Mastrobuono-Battisti, A., McMillan, P. J., Meichsner, J., Merc, J., Messina, S., Millar, N. R., Mints, A., Mohamed, D., Molina, D., Molinaro, R., Molnár, L., Monguió, M., Montegriffo, P., Monti, L., Mora, A., Morbidelli, R., Morris, D., Mudimadugula, R., Muraveva, T., Musella, I., Nagy, Z., Nardetto, N., Navarrete, C., Oh, S., Ordenovic, C., Orenstein, O., Pagani, C., Pagano, I., Palaversa, L., Palicio, P. A., Pallas-Quintela, L., Pawlak, M., Penttilä, A., Pesciullesi, P., Pinamonti, M., Plachy, E., Planquart, L., Plum, G., Poggio, E., Pourbaix, D., Price-Whelan, A. M., Pulone, L., Rabin, V., Rainer, M., Raiteri, C. M., Ramos, P., Ramos-Lerate, M., Ratajczak, M., Re Fiorentin, P., Regibo, S., Reylé, C., Ripepi, V., Riva, A., Rix, H. W., Rixon, G., Robert, G., Robichon, N., Robin, C., Romero-Gómez, M., Rowell, N., Ruz Mieres, D., Rybicki, K. A., Sadowski, G., Sagristà Sellés, A., Sanna, N., Santoveña, R., Sarasso, M., Sarmiento, M. H., Sarrate Riera, C., Sciacca, E., Ségransan, D., Semczuk, M., Shahaf, S., Siebert, A., Slezak, E., Smart, R. L., Snaith, O. N., Solano, E., Solitro, F., Souami, D., Souchay, J., Spitoni, E., Spoto, F., Squillante, L. A., Steele, I. A., Steidelmüller, H., Surdej, J., Szabados, L., Taris, F., Taylor, M. B., Teixeira, R., Tepper-Garcia, T., Thuillot, W., Tolomei, L., Tonello, N., Torra, F., Torralba Elipe, G., Trabucchi, M., Trentin, E., Tsantaki, M., Turon, C., Ulla, A., Unger, N., Valtchanov, I., Vanel, O., Vecchiato, A., Vicente, D., Villar, E., Weiler, M., Zhao, H., Zorec, J., Zucker, S., Župiä, A., and Zwitter, T.
- Abstract
Context. Gravitational waves from black-hole (BH) merging events have revealed a population of extra-galactic BHs residing in short-period binaries with masses that are higher than expected based on most stellar evolution models-And also higher than known stellar-origin black holes in our Galaxy. It has been proposed that those high-mass BHs are the remnants of massive metal-poor stars. Aims. Gaia astrometry is expected to uncover many Galactic wide-binary systems containing dormant BHs, which may not have been detected before. The study of this population will provide new information on the BH-mass distribution in binaries and shed light on their formation mechanisms and progenitors. Methods. As part of the validation efforts in preparation for the fourth Gaia data release (DR4), we analysed the preliminary astrometric binary solutions, obtained by the Gaia Non-Single Star pipeline, to verify their significance and to minimise false-detection rates in high-mass-function orbital solutions. Results. The astrometric binary solution of one source, Gaia BH3, implies the presence of a 32.70a ±a 0.82aM- BH in a binary system with a period of 11.6 yr. Gaia radial velocities independently validate the astrometric orbit. Broad-band photometric and spectroscopic data show that the visible component is an old, very metal-poor giant of the Galactic halo, at a distance of 590 pc. Conclusions. The BH in the Gaia BH3 system is more massive than any other Galactic stellar-origin BH known thus far. The low metallicity of the star companion supports the scenario that metal-poor massive stars are progenitors of the high-mass BHs detected by gravitational-wave telescopes. The Galactic orbit of the system and its metallicity indicate that it might belong to the Sequoia halo substructure. Alternatively, and more plausibly, it could belong to the ED-2 stream, which likely originated from a globular cluster that had been disrupted by the Milky Way., Funder: for funder information see Appendix F in https://doi.org/10.1051/0004-6361/202449763;Full text license: CC BY 4.0
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- 2024
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112. Pulp Wastewater Treatment Using Anaerobic Moving Bed Biofilm Reactors: A Case-Study
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Bard, Sara, Jacobsson, Susanne, Pizzul, Leticia, Haglund, Emilie, Andersson, Anders F., Morgan-Sagastume, Fernando, Delgado, Luis F., Bard, Sara, Jacobsson, Susanne, Pizzul, Leticia, Haglund, Emilie, Andersson, Anders F., Morgan-Sagastume, Fernando, and Delgado, Luis F.
- Abstract
The pulp and paper (P&P) industry holds significant global importance. However, the industry’s processes substantially demand water and energy resources. Consequently, there is a pressing need for the industry to adopt more sustainable production practices, aiming to trim environmental impact and strengthen resilience against climate change. Recent research has highlighted the potential for substantial increases in Swedish biogas production using anaerobic wastewater (WW) treatment methods within P&P mills. The P&P sector traditionally relies on aerobic biological WW treatment, overlooking the valuable opportunity for WW resource recovery. This study aims to evaluate anaerobic moving bed biofilm reactors (AnMBBR) to enhance energy recovery while enabling treatment capacity for the P&P industry’s anaerobic WW treatment. The results of this study showed the resilience of the AnMBBR system. It proved capable of recovering from overload conditions and operating even during prolonged periods at low pH levels. However, the system removes mainly soluble COD, suggesting higher capabilities on P&P WW with a high fraction of soluble COD. Its ability to produce methane-rich biogas demonstrates efficient gas production while maintaining simple operational procedures., Part of ISBN 9783031633522QC 20240719
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- 2024
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113. Temperature and water availability drive insect seasonality across a temperate and a tropical region
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van Dijk, Laura J.A., Fisher, Brian L., Miraldo, Andreia, Goodsell, Robert M., Iwaszkiewicz-Eggebrecht, Elzbieta, Raharinjanahary, Dimby, Rajoelison, Eric Tsiriniaina, Łukasik, Piotr, Andersson, Anders F., Ronquist, Fredrik, Roslin, Tomas, Tack, Ayco J.M., van Dijk, Laura J.A., Fisher, Brian L., Miraldo, Andreia, Goodsell, Robert M., Iwaszkiewicz-Eggebrecht, Elzbieta, Raharinjanahary, Dimby, Rajoelison, Eric Tsiriniaina, Łukasik, Piotr, Andersson, Anders F., Ronquist, Fredrik, Roslin, Tomas, and Tack, Ayco J.M.
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The more insects there are, the more food there is for insectivores and the higher the likelihood for insect-associated ecosystem services. Yet, we lack insights into the drivers of insect biomass over space and seasons, for both tropical and temperate zones. We used 245 Malaise traps, managed by 191 volunteers and park guards, to characterize year-round flying insect biomass in a temperate (Sweden) and a tropical (Madagascar) country. Surprisingly, we found that local insect biomass was similar across zones. In Sweden, local insect biomass increased with accumulated heat and varied across habitats, while biomass in Madagascar was unrelated to the environmental predictors measured. Drivers behind seasonality partly converged: In both countries, the seasonality of insect biomass differed between warmer and colder sites, and wetter and drier sites. In Sweden, short-term deviations from expected season-specific biomass were explained by week-to-week fluctuations in accumulated heat, rainfall and soil moisture, whereas in Madagascar, weeks with higher soil moisture had higher insect biomass. Overall, our study identifies key drivers of the seasonal distribution of flying insect biomass in a temperate and a tropical climate. This knowledge is key to understanding the spatial and seasonal availability of insects-as well as predicting future scenarios of insect biomass change., QC 20240703
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- 2024
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114. Control of Vibrio vulnificus proliferation in the Baltic Sea through eutrophication and algal bloom management
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Riedinger, David J., Fernández-Juárez, Victor, Delgado, Luis F., Sperlea, Theodor, Hassenrück, Christiane, Herlemann, Daniel P. R., Pansch, Christian, Kataržytė, Marija, Bruck, Florian, Ahrens, Alwin, Rakowski, Marcin, Piwosz, Kasia, Stevenson, Angela, Reusch, Thorsten B. H., Gyraitė, Greta, Schulz-Bull, Detlef, Benterbusch-Brockmöller, Heike, Kube, Sandra, Dupke, Susann, Andersson, Anders F., Riemann, Lasse, Labrenz, Matthias, Riedinger, David J., Fernández-Juárez, Victor, Delgado, Luis F., Sperlea, Theodor, Hassenrück, Christiane, Herlemann, Daniel P. R., Pansch, Christian, Kataržytė, Marija, Bruck, Florian, Ahrens, Alwin, Rakowski, Marcin, Piwosz, Kasia, Stevenson, Angela, Reusch, Thorsten B. H., Gyraitė, Greta, Schulz-Bull, Detlef, Benterbusch-Brockmöller, Heike, Kube, Sandra, Dupke, Susann, Andersson, Anders F., Riemann, Lasse, and Labrenz, Matthias
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Due to climate change the pathogenic bacterium Vibrio vulnificus proliferates along brackish coastlines, posing risks to public health, tourism, and aquaculture. Here we investigated previously suggested regulation measures to reduce the prevalence of V. vulnificus, locally through seagrass and regionally through the reduction of eutrophication and consequential formation of algal blooms. Field samples collected in the summer of 2021 covered the salinity and eutrophication gradients of the Baltic Sea, one of the largest brackish areas worldwide. Physico-, biological- and hydrochemical parameters were measured and variables explaining V. vulnificus occurrence were identified by machine learning. The best V. vulnificus predictors were eutrophication-related features, such as particulate organic carbon and nitrogen, as well as occurrence of potential phytoplankton blooms and associated species. V. vulnificus abundance did not vary significantly between vegetated and non-vegetated areas. Thus, reducing nutrient inputs could be an effective method to control V. vulnificus populations in eutrophied brackish coasts., QC 20240524
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- 2024
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115. Weight Loss for Patients With Gout and Concomitant Obesity:A Proof-of-Concept Randomized Trial
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Christensen, Robin, Zobbe, Kristian, Nielsen, Sabrina M, Stamp, Lisa K, Henriksen, Marius, Overgaard, Anders F, Dreyer, Lene, Knop, Filip K, Singh, Jasvinder A, Doherty, Michael, Richette, Pascal, Astrup, Arne, Ellegaard, Karen, Bartels, Else M, Boesen, Mikael, Gudbergsen, Henrik, Bliddal, Henning, Kristensen, Lars Erik, Christensen, Robin, Zobbe, Kristian, Nielsen, Sabrina M, Stamp, Lisa K, Henriksen, Marius, Overgaard, Anders F, Dreyer, Lene, Knop, Filip K, Singh, Jasvinder A, Doherty, Michael, Richette, Pascal, Astrup, Arne, Ellegaard, Karen, Bartels, Else M, Boesen, Mikael, Gudbergsen, Henrik, Bliddal, Henning, and Kristensen, Lars Erik
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Objective Despite scarce evidence, guidelines recommend weight loss as a management strategy for patients with gout. We investigated the effect of an intensive dietary intervention on body weight and clinical measures of gout severity in individuals with obesity and gout. Methods We conducted a 16-week randomized nonmasked parallel-group trial in Denmark, randomly assigning (one-to-one) individuals with obesity and gout to a low-energy diet or a control diet. The primary outcome was change in body weight. Key secondary outcomes were changes in serum urate (SU) level and visual analog scale–assessed pain and fatigue. Results Between December 1, 2018, and June 1, 2019, 61 participants were included in the intention-to-treat population and randomly assigned to the intensive diet group (n = 29) or control diet group (n = 32). Participants had a mean age of 60.3 (SD 9.9) years and mean body mass index of 35.6 (SD 5.0), and 59 (97%) were men. After 16 weeks, there was a significant difference in change in body weight between the diet and control groups (−15.4 vs −7.7 kg; difference −7.7 kg [95% confidence interval −10.7 to −4.7], P < 0.001). Despite results being potentially in favor of a low-energy diet, we could not confirm differences in SU level changes and fatigue between groups. No differences in pain and gout flares were observed between groups. No serious adverse events or deaths occurred during the trial. Conclusion An intensive dietary intervention was safe and effectively lowered body weight in people with obesity and gout, but the weight loss did not directly translate into effects on SU level, fatigue, and pain., OBJECTIVE: Despite scarce evidence, guidelines recommend weight loss as a management strategy for patients with gout. We investigated the effect of an intensive dietary intervention on body weight and clinical measures of gout severity in individuals with obesity and gout.METHODS: We conducted a 16-week randomized nonmasked parallel-group trial in Denmark, randomly assigning (one-to-one) individuals with obesity and gout to a low-energy diet or a control diet. The primary outcome was change in body weight. Key secondary outcomes were changes in serum urate (SU) level and visual analog scale-assessed pain and fatigue.RESULTS: Between December 1, 2018, and June 1, 2019, 61 participants were included in the intention-to-treat population and randomly assigned to the intensive diet group (n = 29) or control diet group (n = 32). Participants had a mean age of 60.3 (SD 9.9) years and mean body mass index of 35.6 (SD 5.0), and 59 (97%) were men. After 16 weeks, there was a significant difference in change in body weight between the diet and control groups (-15.4 vs -7.7 kg; difference -7.7 kg [95% confidence interval -10.7 to -4.7], P < 0.001). Despite results being potentially in favor of a low-energy diet, we could not confirm differences in SU level changes and fatigue between groups. No differences in pain and gout flares were observed between groups. No serious adverse events or deaths occurred during the trial.CONCLUSION: An intensive dietary intervention was safe and effectively lowered body weight in people with obesity and gout, but the weight loss did not directly translate into effects on SU level, fatigue, and pain.
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- 2024
116. A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
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Latz, Meike A.C., Andersson, Agneta, Brugel, Sonia, Hedblom, Mikael, Jurdzinski, Krzysztof T., Karlson, Bengt, Lindh, Markus, Lycken, Jenny, Torstensson, Anders, Andersson, Anders F., Latz, Meike A.C., Andersson, Agneta, Brugel, Sonia, Hedblom, Mikael, Jurdzinski, Krzysztof T., Karlson, Bengt, Lindh, Markus, Lycken, Jenny, Torstensson, Anders, and Andersson, Anders F.
- Abstract
The Baltic Sea is one of the largest brackish water environments on earth and is characterised by pronounced physicochemical gradients and seasonal dynamics. Although the Baltic Sea has a long history of microscopy-based plankton monitoring, DNA-based metabarcoding has so far mainly been limited to individual transect cruises or time-series of single stations. Here we report a dataset covering spatiotemporal variation in prokaryotic and eukaryotic microbial communities and physicochemical parameters. Within 13-months between January 2019 and February 2020, 341 water samples were collected at 22 stations during monthly cruises along the salinity gradient. Both salinity and seasonality are strongly reflected in the data. Since the dataset was generated with both metabarcoding and microscopy-based methods, it provides unique opportunities for both technical and ecological analyses, and is a valuable biodiversity reference for future studies, in the prospect of climate change., The Baltic Sea is one of the largest brackish water environments on earth and is characterised by pronounced physicochemical gradients and seasonal dynamics. Although the Baltic Sea has a long history of microscopy-based plankton monitoring, DNA-based metabarcoding has so far mainly been limited to individual transect cruises or time-series of single stations. Here we report a dataset covering spatiotemporal variation in prokaryotic and eukaryotic microbial communities and physicochemical parameters. Within 13-months between January 2019 and February 2020, 341 water samples were collected at 22 stations during monthly cruises along the salinity gradient. Both salinity and seasonality are strongly reflected in the data. Since the dataset was generated with both metabarcoding and microscopy-based methods, it provides unique opportunities for both technical and ecological analyses, and is a valuable biodiversity reference for future studies, in the prospect of climate change.
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- 2024
117. Active sulfur cycling in the terrestrial deep subsurface
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Bell, Emma, Lamminmäki, Tiina, Alneberg, Johannes, Andersson, Anders F., Qian, Chen, Xiong, Weili, Hettich, Robert L., Frutschi, Manon, and Bernier-Latmani, Rizlan
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- 2020
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118. THE ELEVENTH and TWELFTH DATA RELEASES of the SLOAN DIGITAL SKY SURVEY: FINAL DATA from SDSS-III
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Alam, S, Albareti, FD, Prieto, CA, Anders, F, Anderson, SF, Anderton, T, Andrews, BH, Armengaud, E, Aubourg, É, Bailey, S, Basu, S, Bautista, JE, Beaton, RL, Beers, TC, Bender, CF, Berlind, AA, Beutler, F, Bhardwaj, V, Bird, JC, Bizyaev, D, Blake, CH, Blanton, MR, Blomqvist, M, Bochanski, JJ, Bolton, AS, Bovy, J, Bradley, AS, Brandt, WN, Brauer, DE, Brinkmann, J, Brown, PJ, Brownstein, JR, Burden, A, Burtin, E, Busca, NG, Cai, Z, Capozzi, D, Rosell, AC, Carr, MA, Carrera, R, Chambers, KC, Chaplin, WJ, Chen, YC, Chiappini, C, Chojnowski, SD, Chuang, CH, Clerc, N, Comparat, J, Covey, K, Croft, RAC, Cuesta, AJ, Cunha, K, Costa, LND, Rio, ND, Davenport, JRA, Dawson, KS, Lee, ND, Delubac, T, Deshpande, R, Dhital, S, Dutra-Ferreira, L, Dwelly, T, Ealet, A, Ebelke, GL, Edmondson, EM, Eisenstein, DJ, Ellsworth, T, Elsworth, Y, Epstein, CR, Eracleous, M, Escoffier, S, Esposito, M, Evans, ML, Fan, X, Fernández-Alvar, E, Feuillet, D, Ak, NF, Finley, H, Finoguenov, A, Flaherty, K, Fleming, SW, Font-Ribera, A, Foster, J, Frinchaboy, PM, Galbraith-Frew, JG, García, RA, García-Hernández, DA, Pérez, AEG, Gaulme, P, Ge, J, Génova-Santos, R, Georgakakis, A, Ghezzi, L, Gillespie, BA, Girardi, L, Goddard, D, Gontcho, SGA, Hernández, JIG, Grebel, EK, and Green, PJ
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atlases ,catalogs ,surveys ,astro-ph.IM ,astro-ph.GA ,astro-ph.SR ,Astronomy & Astrophysics ,Astronomical and Space Sciences ,Atomic ,Molecular ,Nuclear ,Particle and Plasma Physics ,Physical Chemistry ,Atomic ,Molecular ,Nuclear ,Particle and Plasma Physics ,Physical Chemistry (incl. Structural) - Abstract
The third generation of the Sloan Digital Sky Survey (SDSS-III) took data from 2008 to 2014 using the original SDSS wide-field imager, the original and an upgraded multi-object fiber-fed optical spectrograph, a new near-infrared high-resolution spectrograph, and a novel optical interferometer. All of the data from SDSS-III are now made public. In particular, this paper describes Data Release 11 (DR11) including all data acquired through 2013 July, and Data Release 12 (DR12) adding data acquired through 2014 July (including all data included in previous data releases), marking the end of SDSS-III observing. Relative to our previous public release (DR10), DR12 adds one million new spectra of galaxies and quasars from the Baryon Oscillation Spectroscopic Survey (BOSS) over an additional 3000 deg2 of sky, more than triples the number of H-band spectra of stars as part of the Apache Point Observatory (APO) Galactic Evolution Experiment (APOGEE), and includes repeated accurate radial velocity measurements of 5500 stars from the Multi-object APO Radial Velocity Exoplanet Large-area Survey (MARVELS). The APOGEE outputs now include the measured abundances of 15 different elements for each star. In total, SDSS-III added 5200 deg2 of ugriz imaging; 155,520 spectra of 138,099 stars as part of the Sloan Exploration of Galactic Understanding and Evolution 2 (SEGUE-2) survey; 2,497,484 BOSS spectra of 1,372,737 galaxies, 294,512 quasars, and 247,216 stars over 9376 deg2; 618,080 APOGEE spectra of 156,593 stars; and 197,040 MARVELS spectra of 5513 stars. Since its first light in 1998, SDSS has imaged over 1/3 of the Celestial sphere in five bands and obtained over five million astronomical spectra.
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- 2015
119. CONCOCT: Clustering cONtigs on COverage and ComposiTion
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Alneberg, Johannes, Bjarnason, Brynjar Smari, de Bruijn, Ino, Schirmer, Melanie, Quick, Joshua, Ijaz, Umer Z., Loman, Nicholas J., Andersson, Anders F., and Quince, Christopher
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Quantitative Biology - Genomics - Abstract
Metagenomics enables the reconstruction of microbial genomes in complex microbial communities without the need for culturing. Since assembly typically results in fragmented genomes the grouping of genome fragments (contigs) belonging to the same genome, a process referred to as binning, remains a major informatics challenge. Here we present CONCOCT, a computer program that combines three types of information - sequence composition, coverage across multiple sample, and read-pair linkage - to automatically bin contigs into genomes. We demonstrate high recall and precision rates of the program on artificial as well as real human gut metagenome datasets., Comment: 28 pages, 14 figures
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- 2013
120. Chemodynamics of the Milky Way. I. The first year of APOGEE data
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Anders, F., Chiappini, C., Santiago, B. X., Rocha-Pinto, H. J., Girardi, L., da Costa, L. N., Maia, M. A. G., Steinmetz, M., Minchev, I., Schultheis, M., Boeche, C., Miglio, A., Montalbán, J., Schneider, D. P., Beers, T. C., Cunha, K., Prieto, C. Allende, Balbinot, E., Bizyaev, D., Brauer, D. E., Brinkmann, J., Frinchaboy, P. M., Pérez, A. E. García, Hayden, M. R., Hearty, F. R., Holtzman, J., Johnson, J., Kinemuchi, K., Majewski, S. R., Malanushenko, E., Malanushenko, V., Nidever, D. L., O'Connell, R. W., Pan, K., Robin, A. C., Schiavon, R. P., Shetrone, M., Skrutskie, M. F., Smith, V. V., Stassun, K., and Zasowski, G.
- Subjects
Astrophysics - Galaxy Astrophysics - Abstract
We investigate the chemo-kinematic properties of the Milky Way disc by exploring the first year of data from the Apache Point Observatory Galactic Evolution Experiment (APOGEE), and compare our results to smaller optical high-resolution samples in the literature, as well as results from lower resolution surveys such as GCS, SEGUE and RAVE. We start by selecting a high-quality sample in terms of chemistry ($\sim$ 20.000 stars) and, after computing distances and orbital parameters for this sample, we employ a number of useful subsets to formulate constraints on Galactic chemical and chemodynamical evolution processes in the Solar neighbourhood and beyond (e.g., metallicity distributions -- MDFs, [$\alpha$/Fe] vs. [Fe/H] diagrams, and abundance gradients). Our red giant sample spans distances as large as 10 kpc from the Sun. We find remarkable agreement between the recently published local (d $<$ 100 pc) high-resolution high-S/N HARPS sample and our local HQ sample (d $<$ 1 kpc). The local MDF peaks slightly below solar metallicity, and exhibits an extended tail towards [Fe/H] $= -$1, whereas a sharper cut-off is seen at larger metallicities. The APOGEE data also confirm the existence of a gap in the [$\alpha$/Fe] vs. [Fe/H] abundance diagram. When expanding our sample to cover three different Galactocentric distance bins, we find the high-[$\alpha$/Fe] stars to be rare towards the outer zones, as previously suggested in the literature. For the gradients in [Fe/H] and [$\alpha$/Fe], measured over a range of 6 $ < $ R $ <$ 11 kpc in Galactocentric distance, we find a good agreement with the gradients traced by the GCS and RAVE dwarf samples. For stars with 1.5 $<$ z $<$ 3 kpc, we find a positive metallicity gradient and a negative gradient in [$\alpha$/Fe]., Comment: 25 pages, 17 figures. A&A, in press
- Published
- 2013
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121. Double Occupancy and Magnetic Susceptibility of the Anderson Impurity Model out of Equilibrium
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Dirks, A., Schmitt, S., Han, J. E., Anders, F., Werner, P., and Pruschke, T.
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Condensed Matter - Strongly Correlated Electrons - Abstract
We use different numerical approaches to calculate the double occupancy and mag- netic susceptibility as a function of a bias voltage in an Anderson impurity model. Specifically, we compare results from the Matsubara-voltage quantum Monte-Carlo approach (MV-QMC), the scattering-states numerical renormalization group (SNRG), and real-time quantum Monte-Carlo (RT-QMC), covering Coulomb repulsions ranging from the weak-coupling well into the strong- coupling regime. We observe a distinctly different behavior of the double occupancy and the magnetic response. The former measures charge fluctuations and thus only indirectly exhibits the Kondo scale, while the latter exhibits structures on the scale of the equilibrium Kondo tempera- ture. The Matsubara-voltage approach and the scattering-states numerical renormalization group yield consistent values for the magnetic susceptibility in the Kondo limit. On the other hand, all three numerical methods produce different results for the behavior of charge fluctuations in strongly interacting dots out of equilibrium., Comment: 6 pages, 4 figures
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- 2013
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122. Antibiotic Treatment, Mechanisms for Failure, and Adjunctive Therapies for Infections by Group A Streptococcus
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Anders F. Johnson and Christopher N. LaRock
- Subjects
group A Streptococcus ,Streptococcus pyogenes ,antibiotic resistance ,treatment failure ,experimental therapeutics ,Microbiology ,QR1-502 - Abstract
Group A Streptococcus (GAS; Streptococcus pyogenes) is a nearly ubiquitous human pathogen responsible for a significant global disease burden. No vaccine exists, so antibiotics are essential for effective treatment. Despite a lower incidence of antimicrobial resistance than many pathogens, GAS is still a top 10 cause of death due to infections worldwide. The morbidity and mortality are primarily a consequence of the immune sequelae and invasive infections that are difficult to treat with antibiotics. GAS has remained susceptible to penicillin and other β-lactams, despite their widespread use for 80 years. However, the failure of treatment for invasive infections with penicillin has been consistently reported since the introduction of antibiotics, and strains with reduced susceptibility to β-lactams have emerged. Furthermore, isolates responsible for outbreaks of severe infections are increasingly resistant to other antibiotics of choice, such as clindamycin and macrolides. This review focuses on the challenges in the treatment of GAS infection, the mechanisms that contribute to antibiotic failure, and adjunctive therapeutics. Further understanding of these processes will be necessary for improving the treatment of high-risk GAS infections and surveillance for non-susceptible or resistant isolates. These insights will also help guide treatments against other leading pathogens for which conventional antibiotic strategies are increasingly failing.
- Published
- 2021
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123. Machine Learning Predicts the Presence of 2,4,6-Trinitrotoluene in Sediments of a Baltic Sea Munitions Dumpsite Using Microbial Community Compositions
- Author
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René Janßen, Aaron J. Beck, Johannes Werner, Olaf Dellwig, Johannes Alneberg, Bernd Kreikemeyer, Edmund Maser, Claus Böttcher, Eric P. Achterberg, Anders F. Andersson, and Matthias Labrenz
- Subjects
munition compounds ,Kolberger Heide ,mercury ,random forest ,16S rRNA gene amplicon sequencing ,monitoring ,Microbiology ,QR1-502 - Abstract
Bacteria are ubiquitous and live in complex microbial communities. Due to differences in physiological properties and niche preferences among community members, microbial communities respond in specific ways to environmental drivers, potentially resulting in distinct microbial fingerprints for a given environmental state. As proof of the principle, our goal was to assess the opportunities and limitations of machine learning to detect microbial fingerprints indicating the presence of the munition compound 2,4,6-trinitrotoluene (TNT) in southwestern Baltic Sea sediments. Over 40 environmental variables including grain size distribution, elemental composition, and concentration of munition compounds (mostly at pmol⋅g–1 levels) from 150 sediments collected at the near-to-shore munition dumpsite Kolberger Heide by the German city of Kiel were combined with 16S rRNA gene amplicon sequencing libraries. Prediction was achieved using Random Forests (RFs); the robustness of predictions was validated using Artificial Neural Networks (ANN). To facilitate machine learning with microbiome data we developed the R package phyloseq2ML. Using the most classification-relevant 25 bacterial genera exclusively, potentially representing a TNT-indicative fingerprint, TNT was predicted correctly with up to 81.5% balanced accuracy. False positive classifications indicated that this approach also has the potential to identify samples where the original TNT contamination was no longer detectable. The fact that TNT presence was not among the main drivers of the microbial community composition demonstrates the sensitivity of the approach. Moreover, environmental variables resulted in poorer prediction rates than using microbial fingerprints. Our results suggest that microbial communities can predict even minor influencing factors in complex environments, demonstrating the potential of this approach for the discovery of contamination events over an integrated period of time. Proven for a distinct environment future studies should assess the ability of this approach for environmental monitoring in general.
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- 2021
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124. Expression of Sex Hormone Receptor and Immune Response Genes in Peripheral Blood Mononuclear Cells During the Menstrual Cycle
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Peik M. A. Brundin, Britt-Marie Landgren, Peter Fjällström, Mohamed M. Shamekh, Jan-Åke Gustafsson, Anders F. Johansson, and Ivan Nalvarte
- Subjects
menstrual cycle ,estrogen receptor ,progesterone ,sex hormone ,immune response ,estrogen ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Sex hormones are known to interact with the immune system on multiple levels but information on the types of sex hormone receptors (SHR) and their expression levels in immune cells is scarce. Estrogen, testosterone and progesterone are all considered to interact with the immune system through their respective cell receptors (ERα and ERβ including the splice variant ERβ2, AR and PGR). In this study expression levels of SHR genes in peripheral blood mononuclear cells (PBMCs) and cell subsets (CD4+ and CD8+ T-cells, CD56+ NK-cells, CD14+ monocytes and CD19+ B-cells) were analyzed using standard manual qPCR or a qPCR array (TLDA). Nine healthy individuals including men (n = 2), premenopausal (Pre-MP, n = 5) and postmenopausal (post-MP, n = 2) women were sampled for PBMCs which were separated to cell subsets using FACS. Ten Pre-MP women were longitudinally sampled for total PBMCs at different phases of the menstrual cycle. We found that ERα was most abundant and, unexpectedly, that ERβ2 was the dominant ERβ variant in several FACS sorted cell subsets. In total PBMCs, SHR (ERα, ERβ1, ERβ2, and AR) expression did not fluctuate according to the phase of the menstrual cycle and PGR was not expressed. However, several immune response genes (GATA3, IFNG, IL1B, LTA, NFKB1, PDCD1, STAT3, STAT5A, TBX21, TGFB1, TNFA) were more expressed during the ovulatory and mid-luteal phases. Sex hormone levels did not correlate significantly with gene expression of SHR or immune response genes, but sex hormone-binding globulin (SHBG), a steroid hormone transporting protein, was positively correlated to expression of ERβ1 gene. This study provides new insights in the distribution of ERs in immune cells. Furthermore, expression patterns of several immune response genes differ significantly between phases of the menstrual cycle, supporting a role for sex hormones in the immune response.
- Published
- 2021
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125. Ab initio study of a mechanically gated molecule: From weak to strong correlation
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Greuling, A., Rohlfing, M., Temirov, R., Tautz, F. S., and Anders, F. B.
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Condensed Matter - Materials Science - Abstract
The electronic spectrum of a chemically contacted molecule in the junction of a scanning tunneling microscope can be modified by tip retraction. We analyze this effect by a combination of density functional, many-body perturbation and numerical renormalization group theory, taking into account both the non-locality and the dynamics of electronic correlation. Our findings, in particular the evolution from a broad quasiparticle resonance below to a narrow Kondo resonance at the Fermi energy, correspond to the experimental observations., Comment: 4 pages, 3 figures
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- 2010
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126. Socioeconomic Disparities in Anal Cancer: Effect on Treatment Delay and Survival
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Nepal, Pramod, primary, Zafar, Muhammad, additional, Liu, Li C, additional, Xu, Ziqiao, additional, Abdulhai, Mohamad A., additional, Perez-Tamayo, Alejandra M, additional, Chaudhry, Vivek, additional, Mellgren, Anders F, additional, and Gantt, Gerald, additional
- Published
- 2024
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127. Weight Loss for Patients With Gout and Concomitant Obesity: A Proof‐of‐Concept Randomized Trial
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Christensen, Robin, primary, Zobbe, Kristian, additional, Nielsen, Sabrina M., additional, Stamp, Lisa K., additional, Henriksen, Marius, additional, Overgaard, Anders F., additional, Dreyer, Lene, additional, Knop, Filip K., additional, Singh, Jasvinder A., additional, Doherty, Michael, additional, Richette, Pascal, additional, Astrup, Arne, additional, Ellegaard, Karen, additional, Bartels, Else M., additional, Boesen, Mikael, additional, Gudbergsen, Henrik, additional, Bliddal, Henning, additional, and Kristensen, Lars Erik, additional
- Published
- 2024
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128. Premises for a digital twin of the Atlantic salmon in its world: Agency, robustness, subjectivity and prediction
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Budaev, Sergey, primary, Dumitru, Magda L., additional, Enberg, Katja, additional, Handeland, Sigurd Olav, additional, Higginson, Andrew D., additional, Kristiansen, Tore S., additional, Opdal, Anders F., additional, Railsback, Steven F., additional, Rønnestad, Ivar, additional, Vollset, Knut Wiik, additional, Mangel, Marc, additional, and Giske, Jarl, additional
- Published
- 2024
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129. Treatment Outcome of Severe Respiratory Type B Tularemia Using Fluoroquinolones
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Widerström, Micael, primary, Mörtberg, Sara, additional, Magnusson, Mattias, additional, Fjällström, Peter, additional, and Johansson, Anders F, additional
- Published
- 2024
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130. Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton
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Grujčić, Vesna, primary, Saarenpää, Sami, additional, Sundh, John, additional, Sennblad, Bengt, additional, Norgren, Benjamin, additional, Latz, Meike, additional, Giacomello, Stefania, additional, Foster, Rachel A., additional, and Andersson, Anders F., additional
- Published
- 2024
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131. New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system
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Bittner, Meriel J, primary, Bannon, Catherine C, additional, Rowland, Elden, additional, Sundh, John, additional, Bertrand, Erin M, additional, Andersson, Anders F, additional, Paerl, Ryan W, additional, and Riemann, Lasse, additional
- Published
- 2024
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132. Epidemiological and environmental investigation of the 'big four' Vibrio species, 1994 to 2021: a Baltic Sea retrospective study.
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Gyraitė, Greta, Kataržytė, Marija, Bučas, Martynas, Kalvaitienė, Greta, Kube, Sandra, Herlemann, Daniel PR, Pansch, Christian, Andersson, Anders F., Pitkanen, Tarja, Hokajärvi, Anna-Maria, Annus-Urmet, Aune, Hauk, Gerhard, Hippelein, Martin, Lastauskienė, Eglė, and Labrenz, Matthias
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- 2024
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133. Pelvic Necrosis with Formation of a Pelvic "Cloaca" and Necrotizing Soft Tissue Infection After Radiation for Anal Squamous Cell Carcinoma.
- Author
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Rivkin, Angeline C., Khan, Adil H., Mellgren, Anders F., Perez-Tamayo, Alejandra M., Chaudhry, Vivek, Bianchi, Elisa M., and Abdulhai, Mohamad A.
- Subjects
INTENSITY modulated radiotherapy ,SOFT tissue infections ,URETERIC obstruction ,ANUS ,TECHNOLOGICAL innovations ,ANAL cancer - Abstract
Objective: Unusual clinical course Background: Anal squamous cell carcinoma (SCC) is a rare cancer commonly treated with the Nigro protocol, which combines chemotherapy and radiation. Patients who received radiation therapy prior to modern advances, such as computer-based tumor targeting, volumetric planning, and intensity-modulated radiation therapy, experience more acute and chronic adverse effects. Though exceedingly rare, radiation necrosis is of particular concern, as it can result in significant morbidity and mortality, including complex pelvic fistula formation and predisposition to potentially life-threatening necrotizing soft-tissue infections. Case Report: Here, we present a case of a 66-year-old woman with a prior history of anal SCC stage T3N×M0 who was treated with the Nigro protocol. Her treatment course was complicated by radiation proctitis, necessitating fecal diversion and ureteral strictures, requiring frequent stent exchanges. She presented 18 years after her cancer treatment, with widespread necrosis of her pelvic organs and surrounding soft tissue, resulting in formation of a large pelvic "cloaca", with a superimposed necrotizing soft-tissue infection. She was successfully treated by expedited resuscitation, septic source control, using multiple extensive debridements, and complete urinary diversion, utilizing a multidisciplinary team. Conclusions: This case highlights the importance of monitoring patients for signs of radiation toxicity, particularly in patients who received radiation prior to the latest technological advancements, as they are at increased risk of developing severe, late adverse effects decades after treatment. When these complications are recognized, early and aggressive intervention is required to spare the patient significant morbidity and mortality. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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134. Temperature and water availability drive insect seasonality across a temperate and a tropical region.
- Author
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van Dijk, Laura J. A., Fisher, Brian L., Miraldo, Andreia, Goodsell, Robert M., Iwaszkiewicz-Eggebrecht, Elzbieta, Raharinjanahary, Dimby, Rajoelison, Eric Tsiriniaina, Łukasik, Piotr, Andersson, Anders F., Ronquist, Fredrik, Roslin, Tomas, and Tack, Ayco J. M.
- Subjects
INSECT phenology ,WATER supply ,TEMPERATE climate ,TROPICAL climate ,RAINFALL - Abstract
The more insects there are, the more food there is for insectivores and the higher the likelihood for insect-associated ecosystem services. Yet, we lack insights into the drivers of insect biomass over space and seasons, for both tropical and temperate zones. We used 245 Malaise traps, managed by 191 volunteers and park guards, to characterize year-round flying insect biomass in a temperate (Sweden) and a tropical (Madagascar) country. Surprisingly, we found that local insect biomass was similar across zones. In Sweden, local insect biomass increased with accumulated heat and varied across habitats, while biomass in Madagascar was unrelated to the environmental predictors measured. Drivers behind seasonality partly converged: In both countries, the seasonality of insect biomass differed between warmer and colder sites, and wetter and drier sites. In Sweden, short-term deviations from expected season-specific biomass were explained by week-to-week fluctuations in accumulated heat, rainfall and soil moisture, whereas in Madagascar, weeks with higher soil moisture had higher insect biomass. Overall, our study identifies key drivers of the seasonal distribution of flying insect biomass in a temperate and a tropical climate. This knowledge is key to understanding the spatial and seasonal availability of insects—as well as predicting future scenarios of insect biomass change. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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135. AFISsys - An autonomous instrument for the preservation of brackish water samples for microbial metatranscriptome analysis
- Author
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Charvet, Sophie, Riemann, Lasse, Alneberg, Johannes, Andersson, Anders F., von Borries, Julian, Fischer, Uwe, and Labrenz, Matthias
- Published
- 2019
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136. Excited-State Phase Diagram of a Ferromagnetic Quantum Gas
- Author
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Meyer-Hoppe, B., primary, Anders, F., additional, Feldmann, P., additional, Santos, L., additional, and Klempt, C., additional
- Published
- 2023
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137. Dissipative Two-Electron Transfer
- Author
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Tornow, S., Bulla, R., Anders, F. B., and Nitzan, A.
- Subjects
Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Materials Science - Abstract
We investigate non-equilibrium two-electron transfer in a model redox system represented by a two-site extended Hubbard model and embedded in a dissipative environment. The influence of the electron-electron interactions and the coupling to a dissipative bosonic bath on the electron transfer is studied in different temperature regimes. At high temperatures Marcus transfer rates are evaluated and at low temperatures, we calculate equilibrium and non-equilibrium population probabilities of the donor and acceptor with the non-perturbative Numerical Renormalization Group approach. We obtain the non-equilibrium dynamics of the system prepared in an initial state of two electrons at the donor site and identify conditions under which the electron transfer involves one concerted two-electron step or two sequential single-electron steps. The rates of the sequential transfer depend non-monotonically on the difference between the inter-site and on-site Coulomb interaction which become renormalized in the presence of the bosonic bath. If this difference is much larger than the hopping matrix element, the temperature as well as the reorganization energy, simultaneous transfer of both electrons between donor and acceptor can be observed.
- Published
- 2008
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138. A Numerical Renormalization Group approach to Non-Equilibrium Green's Functions for Quantum Impurity Models
- Author
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Anders, F. B.
- Subjects
Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
We present a method for the calculation of dynamical correlation functions of quantum impurity systems out of equilibrium using Wilson's numerical renormalization group. Our formulation is based on a complete basis set of the Wilson chain and embeds the recently derived algorithm for equilibrium spectral functions. Our method fulfills the spectral weight conserving sum-rule exactly by construction. A local Coulomb repulsion $U>0$ is switched on at $t=0$, and the asymptotic steady-state spectral functions are obtained for various values of $U$ as well as magnetic field strength $H$ and temperature $T$. These benchmark tests show excellent agreement between the time-evolved and the directly calculated equilibrium NRG spectra for finite $U$. This method could be used for calculating steady-state non-equilibrium spectral functions at finite bias through interacting nano-devices., Comment: 21 pages, 6 figures
- Published
- 2008
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139. Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability
- Author
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Paerl, Ryan W., Sundh, John, Tan, Demeng, Svenningsen, Sine L., Hylander, Samuel, Pinhassi, Jarone, Andersson, Anders F., and Riemann, Lasse
- Published
- 2018
140. Playing With Fire: Proinflammatory Virulence Mechanisms of Group A Streptococcus
- Author
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Shyra Wilde, Anders F. Johnson, and Christopher N. LaRock
- Subjects
Group A Streptococcus ,Streptococcus pyogenes ,inflammation ,virulence factors ,pathogenesis ,toxins ,Microbiology ,QR1-502 - Abstract
Group A Streptococcus is an obligate human pathogen that is a major cause of infectious morbidity and mortality. It has a natural tropism for the oropharynx and skin, where it causes infections with excessive inflammation due to its expression of proinflammatory toxins and other virulence factors. Inflammation directly contributes to the severity of invasive infections, toxic shock syndrome, and the induction of severe post-infection autoimmune disease caused by autoreactive antibodies. This review discusses what is known about how the virulence factors of Group A Streptococcus induce inflammation and how this inflammation can promote disease. Understanding of streptococcal pathogenesis and the role of hyper-immune activation during infection may provide new therapeutic targets to treat the often-fatal outcome of severe disease.
- Published
- 2021
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141. Kondo effect by controlled cleavage of a single molecule contact
- Author
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Temirov, R., Lassise, A. C., Anders, F., and Tautz, F. S.
- Subjects
Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Materials Science - Abstract
Conductance measurements of a molecular wire, contacted between an epitaxial molecule-metal bond and the tip of a scanning tunneling microscope, are reported. Controlled retraction of the tip gradually de-hybridizes the molecule from the metal substrate. This tunes the wire into the Kondo regime in which the renormalized molecular transport orbital serves as spin impurity at half filling and the Kondo resonance opens up an additional transport channel. Numerical renormalization group simulations suggest this type of behavior to be generic for a common class of metal molecule bonds. The results demonstrate a new approach to single-molecule experiments with atomic-scale contact control and prepare the way for the ab initio simulation of many-body transport through single-molecule junctions., Comment: Main text: 41 pages including references and captions, 9 figures. Supplementary information: 5 pages including 2 figures New experimental and theoretical data supporting initial claims are added. The paper has been reworked from the letter format into a longer version
- Published
- 2006
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142. Influence of Correlated Hybridization on the Conductance of Molecular Transistors
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Lin, J. C., Anders, F. B., and Cox, D. L.
- Subjects
Condensed Matter - Strongly Correlated Electrons - Abstract
We study the spin-1/2 single-channel Anderson impurity model with correlated (occupancy dependent) hybridization for molecular transistors using the numerical renormalization-group method. Correlated hybridization can induce nonuniversal deviations in the normalized zero-bias conductance and, for some parameters, modestly enhance the spin polarization of currents in applied magnetic field. Correlated hybridization can also explain a gate-voltage dependence to the Kondo scale similar to what has been observed in recent experiments., Comment: 4 pages, 5 figures
- Published
- 2006
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143. Unusual Non-Fermi Liquid Behavior of Ce$_{1-x}$La$_{x}$Ni$_{9}$Ge$_4$ Analyzed in a Single Impurity Anderson Model with Crystal Field Effects
- Author
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Scheidt, E. -W., Mayr, F., Killer, U., Scherer, W., Michor, H., Bauer, E., Kehrein, S., Pruschke, Th., and Anders, F.
- Subjects
Condensed Matter - Strongly Correlated Electrons - Abstract
CeNi$_{9}$Ge$_4$ exhibits unusual non-Fermi liquid behavior with the largest ever recorded value of the electronic specific heat $\Delta C/T \cong 5.5$ JK$^{-2}$mol$^{-1}$ without showing any evidence of magnetic order. Specific heat measurements show that the logarithmic increase of the Sommerfeld coefficient flattens off below 200 mK. In marked contrast, the local susceptibility $\Delta\chi$ levels off well above 200 mK and already becomes constant below 1 K. Furthermore, the entropy reaches 2$R$ln2 below 20 K corresponding to a four level system. An analysis of $C$ and $\chi$ was performed in terms of an $SU(N=4)$ single impurity Anderson model with additional crystal electric field (CEF) splitting. Numerical renormalization group calculations point to a possible consistent description of the different low temperature scales in $\Delta c$ and $\Delta \chi$ stemming from the interplay of Kondo effect and crystal field splitting., Comment: 2 pages, 2 figures
- Published
- 2005
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144. Corrigendum to 'Blood hormones and torque teno virus in peripheral blood mononuclear cells' [Heliyon 6 (11) (2020) e05535]
- Author
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Peik M.A. Brundin, Britt-Marie Landgren, Peter Fjällström, Anders F. Johansson, and Ivan Nalvarte
- Subjects
Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Published
- 2021
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145. The tenth data release of the Sloan digital sky survey: First spectroscopic data from the SDSS-iii apache point observatory galactic evolution experiment
- Author
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Gott, JR, Mack, CE, Ahn, CP, Alexandroff, R, Allende Prieto, C, Anders, F, Anderson, SF, Anderton, T, Andrews, BH, Aubourg, E, Bailey, S, Bastien, FA, Bautista, JE, Beers, TC, Beifiori, A, Bender, CF, Berlind, AA, Beutler, F, Bhardwaj, V, Bird, JC, Bizyaev, D, Blake, CH, Blanton, MR, Blomqvist, M, Bochanski, JJ, Bolton, AS, Borde, A, Bovy, J, Bradley, AS, Brandt, WN, Brauer, D, Brinkmann, J, Brownstein, JR, Busca, NG, Carithers, W, Carlberg, JK, Carnero, AR, Carr, MA, Chiappini, C, Chojnowski, SD, Chuang, CH, Comparat, J, Crepp, JR, Cristiani, S, Croft, RAC, Cuesta, AJ, Cunha, K, Da Costa, LN, Dawson, KS, De Lee, N, Dean, JDR, Delubac, T, Deshpande, R, Dhital, S, Ealet, A, Ebelke, GL, Edmondson, EM, Eisenstein, DJ, Epstein, CR, Escoffier, S, Esposito, M, Evans, ML, Fabbian, D, Fan, X, Favole, G, Femenía Castellá, B, Fernández Alvar, E, Feuillet, D, Filiz Ak, N, Finley, H, Fleming, SW, Font-Ribera, A, Frinchaboy, PM, Galbraith-Frew, JG, García-Hernández, DA, Pérez, AEG, Ge, J, Génova-Santos, R, Gillespie, BA, Girardi, L, González Hernández, JI, Gunn, JE, Guo, H, Halverson, S, Harding, P, Harris, DW, Hasselquist, S, Hawley, SL, Hayden, M, Hearty, FR, Herrero Davó, A, Ho, S, Hogg, DW, Holtzman, JA, Honscheid, K, Huehnerhoff, J, Ivans, II, Jackson, KM, Jiang, P, and Johnson, JA
- Subjects
atlases ,catalogs ,surveys ,astro-ph.IM ,astro-ph.CO ,astro-ph.GA ,Astronomy & Astrophysics ,Astronomical and Space Sciences ,Atomic ,Molecular ,Nuclear ,Particle and Plasma Physics ,Physical Chemistry ,Atomic ,Molecular ,Nuclear ,Particle and Plasma Physics ,Physical Chemistry (incl. Structural) - Abstract
The Sloan Digital Sky Survey (SDSS) has been in operation since 2000 April. This paper presents the Tenth Public Data Release (DR10) from its current incarnation, SDSS-III. This data release includes the first spectroscopic data from the Apache Point Observatory Galaxy Evolution Experiment (APOGEE), along with spectroscopic data from the Baryon Oscillation Spectroscopic Survey (BOSS) taken through 2012 July. The APOGEE instrument is a near-infrared R 22,500 300 fiber spectrograph covering 1.514-1.696 μm. The APOGEE survey is studying the chemical abundances and radial velocities of roughly 100,000 red giant star candidates in the bulge, bar, disk, and halo of the Milky Way. DR10 includes 178,397 spectra of 57,454 stars, each typically observed three or more times, from APOGEE. Derived quantities from these spectra (radial velocities, effective temperatures, surface gravities, and metallicities) are also included. DR10 also roughly doubles the number of BOSS spectra over those included in the Ninth Data Release. DR10 includes a total of 1,507,954 BOSS spectra comprising 927,844 galaxy spectra, 182,009 quasar spectra, and 159,327 stellar spectra selected over 6373.2 deg2. © 2014. The American Astronomical Society. All rights reserved..
- Published
- 2014
146. Mutations in RNA Polymerase III genes and defective DNA sensing in adults with varicella-zoster virus CNS infection
- Author
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Carter-Timofte, Madalina E., Hansen, Anders F., Christiansen, Mette, Paludan, Søren R., and Mogensen, Trine H.
- Published
- 2019
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147. Antibiotic-Selected Gene Amplification Heightens Metal Resistance
- Author
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David A. Hufnagel, Jacob E. Choby, Samantha Hao, Anders F. Johnson, Eileen M. Burd, Charles Langelier, and David S. Weiss
- Subjects
Microbiology ,QR1-502 - Abstract
To inhibit bacterial transmission and infection, health care facilities use bactericidal metal coatings to prevent colonization of surfaces and implanted devices. In these environments, antibiotics are commonly used, but their effect on metal resistance is unclear.
- Published
- 2021
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148. Deltaproteobacteria and Spirochaetes-Like Bacteria Are Abundant Putative Mercury Methylators in Oxygen-Deficient Water and Marine Particles in the Baltic Sea
- Author
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Eric Capo, Andrea G. Bravo, Anne L. Soerensen, Stefan Bertilsson, Jarone Pinhassi, Caiyan Feng, Anders F. Andersson, Moritz Buck, and Erik Björn
- Subjects
mercury methylation ,hgcAB ,Baltic Sea ,deltaproteobacteria ,spirochaetes-like bacteria ,Microbiology ,QR1-502 - Abstract
Methylmercury (MeHg), a neurotoxic compound biomagnifying in aquatic food webs, can be a threat to human health via fish consumption. However, the composition and distribution of the microbial communities mediating the methylation of mercury (Hg) to MeHg in marine systems remain largely unknown. In order to fill this knowledge gap, we used the Baltic Sea Reference Metagenome (BARM) dataset to study the abundance and distribution of the genes involved in Hg methylation (the hgcAB gene cluster). We determined the relative abundance of the hgcAB genes and their taxonomic identity in 81 brackish metagenomes that cover spatial, seasonal and redox variability in the Baltic Sea water column. The hgcAB genes were predominantly detected in anoxic water, but some hgcAB genes were also detected in hypoxic and normoxic waters. Phylogenetic analysis identified putative Hg methylators within Deltaproteobacteria, in oxygen-deficient water layers, but also Spirochaetes-like and Kiritimatiellaeota-like bacteria. Higher relative quantities of hgcAB genes were found in metagenomes from marine particles compared to free-living communities in anoxic water, suggesting that such particles are hotspot habitats for Hg methylators in oxygen-depleted seawater. Altogether, our work unveils the diversity of the microorganisms with the potential to mediate MeHg production in the Baltic Sea and pinpoint the important ecological niches for these microorganisms within the marine water column.
- Published
- 2020
- Full Text
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149. A low-gluten diet induces changes in the intestinal microbiome of healthy Danish adults
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Lea B. S. Hansen, Henrik M. Roager, Nadja B. Søndertoft, Rikke J. Gøbel, Mette Kristensen, Mireia Vallès-Colomer, Sara Vieira-Silva, Sabine Ibrügger, Mads V. Lind, Rasmus B. Mærkedahl, Martin I. Bahl, Mia L. Madsen, Jesper Havelund, Gwen Falony, Inge Tetens, Trine Nielsen, Kristine H. Allin, Henrik L. Frandsen, Bolette Hartmann, Jens Juul Holst, Morten H. Sparholt, Jesper Holck, Andreas Blennow, Janne Marie Moll, Anne S. Meyer, Camilla Hoppe, Jørgen H. Poulsen, Vera Carvalho, Domenico Sagnelli, Marlene D. Dalgaard, Anders F. Christensen, Magnus Christian Lydolph, Alastair B. Ross, Silas Villas-Bôas, Susanne Brix, Thomas Sicheritz-Pontén, Karsten Buschard, Allan Linneberg, Jüri J. Rumessen, Claus T. Ekstrøm, Christian Ritz, Karsten Kristiansen, H. Bjørn Nielsen, Henrik Vestergaard, Nils J. Færgeman, Jeroen Raes, Hanne Frøkiær, Torben Hansen, Lotte Lauritzen, Ramneek Gupta, Tine Rask Licht, and Oluf Pedersen
- Subjects
Science - Abstract
Gluten-free diets are increasingly common in the general population. Here, the authors report the results of a randomised cross-over trial involving middle-aged, healthy Danish adults, showing evidence that a low-gluten diet leads to gut microbiome changes, possibly due to variations in dietary fibres.
- Published
- 2018
- Full Text
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150. Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential
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Linda Wampach, Anna Heintz-Buschart, Joëlle V. Fritz, Javier Ramiro-Garcia, Janine Habier, Malte Herold, Shaman Narayanasamy, Anne Kaysen, Angela H. Hogan, Lutz Bindl, Jean Bottu, Rashi Halder, Conny Sjöqvist, Patrick May, Anders F. Andersson, Carine de Beaufort, and Paul Wilmes
- Subjects
Science - Abstract
The effects of caesarean section delivery on mother-to-neonate transmission of microbiota are unclear. Here the authors show that caesarean section delivery can affect the transmission of specific microbial strains and the immunomodulatory potential of the microbiota.
- Published
- 2018
- Full Text
- View/download PDF
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