140 results on '"Altpeter, Fredy"'
Search Results
102. Stress inducible expression of the DREB1A transcription factor from xeric, Hordeum spontaneum L. in turf and forage grass (Paspalum notatum Flugge) enhances abiotic stress tolerance
- Author
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James, Victoria A., primary, Neibaur, Isaac, additional, and Altpeter, Fredy, additional
- Published
- 2007
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103. Flour Protein Composition and Functional Properties of Transgenic Rye Lines Expressing HMW Subunit Genes of Wheat
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Wieser, Herbert, primary, Seilmeier, Werner, additional, Kieffer, Rolf, additional, and Altpeter, Fredy, additional
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- 2005
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104. Perennial Ryegrass (Lolium perenne L.).
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Walker, John M., Wang, Kan, and Altpeter, Fredy
- Abstract
A protocol that facilitates rapid establishment of Agrobacterium-mediated transformation for perennial ryegrass is described. The synthetic green fluorescent protein (sgfpS65T) reporter gene is introduced in combination with the nptII selectable marker gene into axillary bud derived embryogenic calli of perennial ryegrass (Lolium perenne L.) by co-cultivation with Agrobacterium tumefaciens strain AGL0 harboring binary vector pYF132. Following the co-cultivation calli are cultured for 48 h in liquid callus medium containing timentin at 10°C and 70 rpm, which reduces Agrobacterium overgrowth. Using green fluorescent protein (GFP) as a nondestructive visual marker allows identification of responsive genotypes and transgenic cell clusters at an early stage. GFP screening is combined with paromomycin selection to suppress wild type cells. Transgenic plantlets ready to transfer to soil are obtained within 4 mo of explant culture. Between 8 and 16% of the Agrobacterium-inoculated calli regenerate independent, Southern positive transgenic plants. Reproducibility and efficiency in this perennial ryegrass transformation protocols is controlled by multiple factors including genotype dependent tissue culture and gene transfer response, a short tissue culture-and-selection period and the efficient suppression of Agrobacterium following Agrobacterium-mediated gene transfer. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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105. Cloning and characterization of a cDNA encoding a multifunctional gibberellin 20-oxidase from perennial ryegrass (Lolium perenne L.)
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Xu, Jianping, primary, Lange, Theo, additional, and Altpeter, Fredy, additional
- Published
- 2002
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106. Rye (Secale cereale L.).
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Walker, John M., Wang, Kan, and Altpeter, Fredy
- Abstract
Rye (Secale cereale L.) is one of the most recalcitrant plant species for tissue culture and genetic transformation. Embryogenic rye callus loses its ability to regenerate plants quickly in response to high density of Agrobacterium and other stressors. The cocultivation of Agrobacterium and rye immature embryos in liquid medium facilitated washing of the cultures to avoid Agrobacterium overgrowth and allowed a high throughput. More than 40 independent transgenic plants were regenerated with one to four Southern-positive, independent events from 100 inoculated immature embryos. Agrobacterium strain AGL0 supported stable integration of a constitutive nptII selectable marker expression cassette into the genome of rye inbred line L22, as indicated by regeneration of plantlets on paromomycin-containing culture medium, Southern blot, Western blot, and the analysis of T-DNA::plant DNA boundary sequences. Transgenic plants were phenotypically normal and fully fertile, which might be a consequence of the short time in tissue culture. [ABSTRACT FROM AUTHOR]
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- 2006
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107. Agrobacterium-mediated barley (Hordeum vulgare L.) transformation using green fluorescent protein as a visual marker and sequence analysis of the T-DNA∝barley genomic DNA junctions
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Fang, Yu-Da, primary, Akula, Chakradhar, additional, and Altpeter, Fredy, additional
- Published
- 2002
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108. Hilfe zur Meinungsbildung: Gentechnik bei Pflanzen. Von F. Kempken, R. Kempken. Springer, Heidelberg, 2000. 245 S., brosch., 32,‐ DM. ISBN 3‐540‐67547‐7
- Author
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Altpeter, Fredy, primary
- Published
- 2001
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109. Evaluation of baking properties and gluten protein composition of field grown transgenic wheat lines expressing high molecular weight glutenin gene 1Ax1
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Vasil, Indra K., primary, Bean, Scott, additional, Zhao, Jianmin, additional, McCluskey, Patrick, additional, Lookhart, George, additional, Zhao, Hua-Ping, additional, Altpeter, Fredy, additional, and Vasil, Vimla, additional
- Published
- 2001
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110. Rapid production of transgenic turfgrass (Festuca rubra L.) plants
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Altpeter, Fredy, primary and Xu, Jianping, additional
- Published
- 2000
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111. Improved Plant Regeneration from Cell Suspensions of Commercial Cultivars, Breeding- and Inbred Lines of Perennial Ryegrass (Lolium perenne L.)
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Altpeter, Fredy, primary and Posselt, Ulrich K., additional
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- 2000
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112. Integration and expression of the high-molecular-weight glutenin subunit 1Ax1 gene into wheat
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Altpeter, Fredy, primary, Vasil, Vimla, additional, Srivastava, Vibha, additional, and Vasil, Indra K., additional
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- 1996
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113. Improvement of snow mould resistance by conventional and in vitro techniques
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Posselt, Ulrich K., primary and Altpeter, Fredy, additional
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- 1994
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114. Comparative analysis of direct plant regeneration from immature leaf whorl and floral explants for three elite US sugarcane (Saccharum spp. hybrids) genotypes.
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Joshi, Sunil, Jain, Mukesh, Tillman, Barry L., Altpeter, Fredy, and Gallo, Maria
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REGENERATION (Biology) ,PLANTS ,LEAVES ,SACCHARUM ,FIELD crops ,ENERGY crops ,INTERNATIONAL competition - Abstract
Sugarcane ( Saccharum spp. hybrids) is an important commodity field crop in tropical and subtropical countries providing sugar and biofuel feedstock and occupying a critical and strategic position in the global economy. This study was conducted to evaluate, compare, and optimize a rapid direct regeneration tissue culture system from immature leaf whorl and pre-emergent floral explants for three elite US sugarcane genotypes: CP84-1198, CP88-1762, and CP89-2143. Direct regeneration of adventitious shoot buds from the immature leaf roll explants and subsequent elongation and rooting of shoot buds was successfully obtained on modified Murashige and Skoog salt medium supplemented with 5 mg l
–1 α-naphthaleneacetic acid and 0.5 mg l−1 kinetin. Significant genotype-specific differences in the morphogenetic potential of leaf roll explants were discernible with the explant developmental stage (explant position along the leaf roll axis) and orientation during in vitro culture. The highest number of shoots was regenerated from CP88-1762, followed by CP89-2143 and CP84-1198 from explants closest to the meristem that were oriented horizontally (CP88-1762) or vertically (CP89-2143 and CP84-1198) on the culture medium. Immature inflorescence-derived explants from all three genotypes when cultured on the above medium for 2 wk rapidly produced shoots, followed by rooting on medium supplemented with 4 mg l−1 indole-3-butyric acid. The regeneration protocols yielded robust rooted plantlets from immature leaf roll explants within 4 to 6 wk, which were readily acclimatized under greenhouse conditions. [ABSTRACT FROM AUTHOR]- Published
- 2013
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115. Constitutive expression of the barley HvWRKY38 transcription factor enhances drought tolerance in turf and forage grass ( Paspalum notatum Flugge).
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Xi Xiong, James, Victoria, Hangning Zhang, and Altpeter, Fredy
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BAHIA grass ,BIOMASS ,PLANT genetic transformation ,DEHYDRATION ,PROTEINS - Abstract
WRKY proteins constitute a family of transcription factors involved in many plant processes, including responses to biotic and abiotic stress. A constitutive HvWRKY38 expression cassette was introduced into apomictic bahiagrass cultivar ‘Argentine’ by biolistic gene transfer. HvWRKY38 integration and expression was detected in transgenic bahiagrass plants and their apomictic seed progeny by Southern blot, PCR and quantitative real-time RT-PCR analysis, respectively. Transgenic and wildtype plants were grown hydroponically to allow uniform dehydration and rehydration treatments and measure whole plant relative water content and biomass. Transgenic bahiagrass plants retained water better during dehydration, recovered faster and produced more biomass following rehydration and survived severe dehydration stress under controlled environment conditions in contrast to non-transgenic plants. The observed dehydration tolerance is very desirable in perennial grasses like bahiagrass, where seasonal droughts affect establishment, persistence or productivity. Our results confirm the regulatory role of HvWRKY38 in dehydration tolerance. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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116. Greater aperture counteracts effects of reduced stomatal density on water use efficiency: a case study on sugarcane and meta-analysis.
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Lunn, Daniel, Kannan, Baskaran, Germon, Amandine, Leverett, Alistair, Clemente, Tom E, Altpeter, Fredy, and Leakey, Andrew D B
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WATER efficiency , *SORGHUM , *WATER vapor , *STOMATA , *SACCHARUM , *SUGARCANE - Abstract
Stomata regulate CO2 and water vapor exchange between leaves and the atmosphere. Stomata are a target for engineering to improve crop intrinsic water use efficiency (iWUE). One example is by expressing genes that lower stomatal density (SD) and reduce stomatal conductance (g sw). However, the quantitative relationship between reduced SD, g sw, and the mechanisms underlying it is poorly understood. We addressed this knowledge gap using low-SD sugarcane (Saccharum spp. hybrid) as a case study alongside a meta-analysis of data from 10 species. Transgenic expression of EPIDERMAL PATTERNING FACTOR 2 from Sorghum bicolor (SbEPF2) in sugarcane reduced SD by 26–38% but did not affect g sw compared with the wild type. Further, no changes occurred in stomatal complex size or proxies for photosynthetic capacity. Measurements of gas exchange at low CO2 concentrations that promote complete stomatal opening to normalize aperture size between genotypes were combined with modeling of maximum g sw from anatomical data. These data suggest that increased stomatal aperture is the only possible explanation for maintaining g sw when SD is reduced. Meta-analysis across C3 dicots, C3 monocots, and C4 monocots revealed that engineered reductions in SD are strongly correlated with lower g sw (r 2=0.60–0.98), but this response is damped relative to the change in anatomy. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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117. The extent of multiallelic, co‐editing of LIGULELESS1 in highly polyploid sugarcane tunes leaf inclination angle and enables selection of the ideotype for biomass yield.
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Brant, Eleanor J., Eid, Ayman, Kannan, Baskaran, Baloglu, Mehmet Cengiz, and Altpeter, Fredy
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NUCLEOTIDE sequencing , *GENETIC transformation , *LIGHT transmission , *GENOME editing , *BIOMASS , *SUGARCANE - Abstract
Summary: Sugarcane (Saccharum spp. hybrid) is a prime feedstock for commercial production of biofuel and table sugar. Optimizing canopy architecture for improved light capture has great potential for elevating biomass yield. LIGULELESS1 (LG1) is involved in leaf ligule and auricle development in grasses. Here, we report CRISPR/Cas9‐mediated co‐mutagenesis of up to 40 copies/alleles of the putative LG1 in highly polyploid sugarcane (2n = 100–120, x = 10–12). Next generation sequencing revealed co‐editing frequencies of 7.4%–100% of the LG1 reads in 16 of the 78 transgenic lines. LG1 mutations resulted in a tuneable leaf angle phenotype that became more upright as co‐editing frequency increased. Three lines with loss of function frequencies of ~12%, ~53% and ~95% of lg1 were selected following a randomized greenhouse trial and grown in replicated, multi‐row field plots. The co‐edited LG1 mutations were stably maintained in vegetative progenies and the extent of co‐editing remained constant in field tested lines L26 and L35. Next generation sequencing confirmed the absence of potential off targets. The leaf inclination angle corresponded to light transmission into the canopy and tiller number. Line L35 displaying loss of function in ~12% of the lg1 NGS reads exhibited an 18% increase in dry biomass yield supported by a 56% decrease in leaf inclination angle, a 31% increase in tiller number, and a 25% increase in internode number. The scalable co‐editing of LG1 in highly polyploid sugarcane allows fine‐tuning of leaf inclination angle, enabling the selection of the ideotype for biomass yield. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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118. Expression of cry1Fain Bahiagrass Enhances Resistance to Fall Armyworm
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Luciani, Gabriela, Altpeter, Fredy, Yactayo‐Chang, Jessica, Zhang, Hangning, Gallo, Maria, Meagher, Robert L., and Wofford, David
- Abstract
Bahiagrass (Paspalum notatumvar. saurae) is the predominant forage grass in Florida and in other subtropical regions. To improve pest resistance against fall armyworm [Spodoptera frugiperda(J. E. Smith)], an optimized cry1Fagene encoding a δ‐endotoxin from Bacillus thuringiensiswas synthesized, subcloned under the transcriptional control of the constitutive ubi1promoter, and introduced into the bahiagrass cultivar Tifton 9 by particle bombardment. Three transgenic bahiagrass lines were generated using minimal transgene expression cassettes without vector backbone. Southern blot analyses showed independent cry1Fatransgene integration patterns for the three lines. Transcripts of cry1Fawere detected in all three transgenic lines by reverse transcriptase polymerase chain reaction. Cry1Fa protein was detected in two lines by immuno‐chromatography and quantitative Cry1Fa enzyme linked immunosorbent assay (ELISA). The Cry1Fa ELISA also indicated stable cry1Fatransgene expression in vegetative progeny plants of both lines. Cry1Faexpression levels correlated well to resistance levels determined by insect bioassays. An average mortality rate of 83% was observed when neonate larvae of fall armyworm were fed with transgenic leaves of the highest cry1Faexpressing line. These results indicate that minimal expression cassette technology supports stable and high level expression of cry1Fain bahiagrass which can control fall armyworm, a devastating pest of forage grasses.
- Published
- 2007
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119. Apomictic Bahiagrass Expressing the barGene Is Highly Resistant to Glufosinate under Field Conditions
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Sandhu, Sukhpreet, Altpeter, Fredy, and Blount, Ann R.
- Abstract
Bahiagrass (Paspalum notatumFlugge) is one of the most important low‐input turf and forage grasses in the southeastern USA and in other subtropical regions. Its open growth habit, however, facilitates weed encroachment and its low tolerance to commercially available herbicides complicates weed management. Genetic transformation protocols were recently developed for bahiagrass that allow now, among other approaches, the introduction of herbicide resistance genes. Integration of the bargene expression cassette into the genomic DNA of the apomictic bahiagrass cultivar Argentine was confirmed by Southern blot analysis. Stable expression of the bargene was detected by an immunochromatographic assay in primary transgenic lines and the seed‐derived progeny plants. Several independent transgenic lines showed no growth inhibition, chlorosis, or necrosis following a spray application of 1.0% glufosinate ammonium [2‐amino‐4‐(hydroxymethylphosphinyl)butanoic acid] under greenhouse conditions. The selected transgenic plants did not differ morphologically from wild‐type plants and produced viable seeds in the greenhouse and field. All weeds that coestablished during the field experiment, as well as wild‐type bahiagrass, displayed full leaf necrosis after application of 0.3% glufosinate ammonium. Transgenic bahiagrass plants were resistant to a field application of 0.6% glufosinate ammonium, which is twice the recommended rate for weed control, without any symptoms of phytotoxicity.
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- 2007
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120. Stable expression of 1Dx5and 1Dy10high-molecular-weight glutenin subunit genes in transgenic rye drastically increases the polymeric glutelin fraction in rye flour
- Author
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Altpeter, Fredy, Juan, Carlos, and Wieser, Herbert
- Abstract
We generated and characterized transgenic rye synthesizing substantial amounts of high-molecular-weight glutenin subunits (HMW-GS) from wheat. The unique bread-making characteristic of wheat flour is closely related to the elasticity and extensibility of the gluten proteins stored in the starchy endosperm, particularly the HMW-GS. Rye flour has poor bread-making quality, despite the extensive sequence and structure similarities of wheat and rye HMW-GS. The HMW-GS 1Dx5and 1Dy10genes from wheat, known to be associated with good bread-making quality were introduced into a homozygous rye inbred line by the biolistic gene transfer. The transgenic plants, regenerated from immature embryo derived callus cultures were normal, fertile, and transmitted the transgenes stably to the sexual progeny, as shown by Southern blot and SDS-PAGE analysis. Flour proteins were extracted by means of a modified Osborne fractionation from wildtype (L22) as well as transgenic rye expressing 1Dy10 (L26) or 1Dx5 and 1Dy10 (L8) and were quantified by RP-HPLC and GP-HPLC. The amount of transgenic HMW-GS in homozygous rye seeds represented 5.1% (L26) or 16.3% (L8) of the total extracted protein and 17% (L26) or 29% (L8) of the extracted glutelin fraction. The amount of polymerized glutelins was significantly increased in transgenic rye (L26) and more than tripled in transgenic rye (L8) compared to wildtype (L22). Gel permeation HPLC of the un-polymerized fractions revealed that the transgenic rye flours contained a significantly lower proportion of alcohol-soluble oligomeric proteins compared with the non-transgenic flour. The quantitative data indicate that the expression of wheat HMW-GS in rye leads to a high degree of polymerization of transgenic and native storage proteins, probably by formation of intermolecular disulfide bonds. Even γ-40k secalins, which occur in non-transgenic rye as monomers, are incorporated into these polymeric structures. The combination 1Dx5 + 1Dy10 showed stronger effects than 1Dy10 alone. Our results are the first example of genetic engineering to significantly alter the polymerization and composition of storage proteins in rye. This may be an important step towards improving bread-making properties of rye whilst conserving its superior stress resistance.
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- 2004
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121. Generation of Rye (Secale cerealeL.) Plants With Low Transgene Copy Number After Biolistic Gene Transfer and Production of Instantly Marker-Free Transgenic Rye
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Popelka, Juan, Xu, Jianping, and Altpeter, Fredy
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Rye is extremely recalcitrant to tissue culture and genetic transformation. We describe the efficient and reproducible production of stably expressing transgenic rye plants after biolistic gene transfer to callus tissue derived from immature embryos. Key factors in the production of transgenic rye plants include the identification of biolistic gene transfer parameters and a selection protocol, which does not affect its regeneration ability. The bargene was used as a selectable marker and selection was performed by spraying the regenerated shoots with 0.05% Basta solution without any previous selection of tissue cultures. Based on Southern blot analysis, a total of 21 transgenic rye plants with independent transgene integration patterns were produced. A low transgene copy number was observed in most transgenic plants and 40% of the plants had a single transgene copy insert. The high frequency of single transgene copy inserts might be a consequence of the selection system, which is based on the identification of stably expressing transgenic plantlets rather than stably expressing tissue cultures. All transgenic rye lines with single transgene inserts showed stable transgene expression in sexual progenies, but indications of transcriptional and post-transcriptional gene silencing were observed in few transgenic lines with multiple transgene inserts. Tissue culture-based selection was not necessary for the generation of transgenic rye. The identification of 17 transgenic rye plants without using any selectable marker gene by PCR amplification of transgene sequences is also demonstrated. Instant generation of selectable marker-free transgenic rye avoids a negative impact of selective agents on the transgenic tissue cultures, responds to public concerns on the safety of selectable markers and will support multiple transformation cycles for transgene pyramiding.
- Published
- 2003
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122. Rapid production of transgenic turfgrass (Festuca rubraL.) plants
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Altpeter, Fredy and Xu, Jianping
- Abstract
Red or golf course fescue is a major turfgrass in the temperate regions. Regenerable mature embryo-derived callus cultures could be initiated from six out of seven European turf-type red fescue cultivars with significant genotypic differences in the callus induction- and -regeneration frequency and the number of regenerated plantlets per explant. The highly responsive cultivar Borfesta was chosen to develop a rapid transformation system. Biolistic gene transfer of a constitutive npt IIexpression cassette in freshly established callus was followed by paromomycin selection during callus subculture and regeneration. Transgenic plants were transferred to soil less than 5 months from the excision of explants. Between 3 and 5 % of the bombarded call i produced independent transgenic plants, which converts into 1 to 1.7 independent transgenic plants per bombardment. Transgene integration was confirmed by Southern blot analysis. No nontransgenic plants that escaped the selection process were regenerated, indicating a tight selection scheme. Transgene copy number and transgene expression were variable from line to line, as indicated by Southern- and Western blot analysis respectively. A transgenic plant with a high transgene copy number showed the highest transgene expression level. This is the first report on transgenic turf-type red fescue plants.
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- 2000
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123. New Plants for Florida: Molecular Genetics for Enhanced Plant Breeding
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Altpeter, Fredy, primary, Clark, Dave, primary, Gmitter, Fred, primary, Gray, Dennis, primary, Hannah, Curt, primary, Moore, Gloria, primary, Polsten, Jane, primary, Jones, Richard L., primary, Duryea, Mary, primary, and Treat, Berry J., primary
- Published
- 1969
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124. Triacylglycerol, total fatty acid, and biomass accumulation of metabolically engineered energycane grown under field conditions confirms its potential as feedstock for drop‐in fuel production.
- Author
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Cao, Viet Dang, Kannan, Baskaran, Luo, Guangbin, Liu, Hui, Shanklin, John, and Altpeter, Fredy
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BIOMASS , *FATTY acids , *FEEDSTOCK , *PLANT lipids , *BIOMASS production , *HARVESTING time , *ENERGY crops - Abstract
Metabolic engineering for hyperaccumulation of lipids in vegetative tissues of high biomass crops promises a step change in oil yields for the production of advanced biofuels. Energycane is the ideal feedstock for this approach due to its exceptional biomass production and persistence under marginal conditions. Here, we evaluated metabolically engineered energycane with constitutive expression of the lipogenic factors WRINKLED1 (WRI1), DIACYLGLYCEROL ACYLTRANSFERASE1 (DGAT1), and OLEOSIN1 (OLE1) for the accumulation of triacylglycerol (TAG), total fatty acid (TFA), and biomass under field conditions at the University of Florida‐IFAS experiment station near Citra, Florida. TAG and TFA accumulation were highest in leaves (up to 9.9% and 12.9% of DW, respectively), followed by juice from crushed stems, stems, and roots. TAG and TFA accumulation increased up to harvest time and correlated highest with OLE1 and DGAT1 expression. Biomass dry weight, TAG, and TFA content differed greatly depending on DGAT1 and OLE1 expression in transgenic lines with similar WRI1 expression. Biomass did not significantly differ between WT and line L2 with DAGT1 and OLE1 expressed at low levels and TAG and TFA accumulating to 12‐ and 1.6‐fold that of WT leaves, respectively. In contrast, line L13, with intron‐mediated enhancement of DGAT1 expression, displayed a 245‐ to 330‐fold increase in TAG and a 4.75‐ to 6.45‐fold increase in TFA content compared with WT leaves and a biomass reduction of 52%. These results provide the basis for developing novel feedstocks for expanding plant lipid production and point to new prospects for advanced biofuels. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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125. Intron-mediated enhancement of DIACYLGLYCEROL ACYLTRANSFERASE1 expression in energycane promotes a step change for lipid accumulation in vegetative tissues.
- Author
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Cao, Viet Dang, Luo, Guangbin, Korynta, Shelby, Liu, Hui, Liang, Yuanxue, Shanklin, John, and Altpeter, Fredy
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GENE expression , *ACYLTRANSFERASES , *ENERGY crops , *BIOMASS production , *LIPIDS , *TRANSGENE expression - Abstract
Background: Metabolic engineering for hyperaccumulation of lipids in vegetative tissues is a novel strategy for enhancing energy density and biofuel production from biomass crops. Energycane is a prime feedstock for this approach due to its high biomass production and resilience under marginal conditions. DIACYLGLYCEROL ACYLTRANSFERASE (DGAT) catalyzes the last and only committed step in the biosynthesis of triacylglycerol (TAG) and can be a rate-limiting enzyme for the production of TAG. Results: In this study, we explored the effect of intron-mediated enhancement (IME) on the expression of DGAT1 and resulting accumulation of TAG and total fatty acid (TFA) in leaf and stem tissues of energycane. To maximize lipid accumulation these evaluations were carried out by co-expressing the lipogenic transcription factor WRINKLED1 (WRI1) and the TAG protect factor oleosin (OLE1). Including an intron in the codon-optimized TmDGAT1 elevated the accumulation of its transcript in leaves by seven times on average based on 5 transgenic lines for each construct. Plants with WRI1 (W), DGAT1 with intron (Di), and OLE1 (O) expression (WDiO) accumulated TAG up to a 3.85% of leaf dry weight (DW), a 192-fold increase compared to non-modified energycane (WT) and a 3.8-fold increase compared to the highest accumulation under the intron-less gene combination (WDO). This corresponded to TFA accumulation of up to 8.4% of leaf dry weight, a 2.8-fold or 6.1-fold increase compared to WDO or WT, respectively. Co-expression of WDiO resulted in stem accumulations of TAG up to 1.14% of DW or TFA up to 2.08% of DW that exceeded WT by 57-fold or 12-fold and WDO more than twofold, respectively. Constitutive expression of these lipogenic "push pull and protect" factors correlated with biomass reduction. Conclusions: Intron-mediated enhancement (IME) of the expression of DGAT resulted in a step change in lipid accumulation of energycane and confirmed that under our experimental conditions it is rate limiting for lipid accumulation. IME should be applied to other lipogenic factors and metabolic engineering strategies. The findings from this study may be valuable in developing a high biomass feedstock for commercial production of lipids and advanced biofuels. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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126. Largely enhanced bioethanol production through the combined use of lignin-modified sugarcane and xylose fermenting yeast strain.
- Author
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Ko, Ja Kyong, Jung, Je Hyeong, Altpeter, Fredy, Kannan, Baskaran, Kim, Ha Eun, Kim, Kyoung Heon, Alper, Hal S., Um, Youngsoon, and Lee, Sun-Mi
- Subjects
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ETHANOL as fuel , *LIGNOCELLULOSE , *SUGARCANE , *XYLOSE , *FERMENTATION , *BIOMASS - Abstract
The recalcitrant structure of lignocellulosic biomass is a major barrier in efficient biomass-to-ethanol bioconversion processes. The combination of feedstock engineering via modification in the lignin synthesis pathway of sugarcane and co-fermentation of xylose and glucose with a recombinant xylose utilizing yeast strain produced 148% more ethanol compared to that of the wild type biomass and control strain. The lignin reduced biomass led to a substantially increased release of fermentable sugars (glucose and xylose). The engineered yeast strain efficiently co-utilized glucose and xylose for fermentation, elevating ethanol yields. In this study, it was experimentally demonstrated that the combined efforts of engineering both feedstock and microorganisms largely enhances the bioconversion of lignocellulosic feedstock to bioethanol. This strategy will significantly improve the economic feasibility of lignocellulosic biofuels production. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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127. Lipid‐enhanced Oilcane does not impact soil carbon dynamics compared with wild‐type Sugarcane.
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Pagliaro, Zoe, Burke, Jessica, Morrissey, Ember, Ridgeway, Joanna, Singh, Vijay, Altpeter, Fredy, and Brzostek, Edward R.
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SOIL dynamics , *SUGARCANE , *CARBON in soils , *FOREST litter , *CARBON offsetting , *FOREST soils , *LIGNINS - Abstract
The carbon neutral potential of bioenergy relies in part on the ability of feedstocks to sequester carbon (C) in the soil. Sugarcane is one of the most widely used bioenergy crops, yet there remain unknowns about how it impacts soil C dynamics. In addition, Oilcane, a genetically modified version of Sugarcane has been produced to accumulate more energy‐dense oils and less soluble lignin, which enhances conversion efficiency but may also impact soil C cycling. Thus, our objectives were to examine the impact of Sugarcane litter decomposition on soil C formation and losses and determine if the genetic modifications to produce Oilcane alter these dynamics. To do this, we incubated bagasse (processed stem litter) and leaf litter from Sugarcane and Oilcane in microcosms with forest soil for 11 weeks. We used differences in natural abundance δ13C between C3 forest soil and C4 litter to trace the fate of the litter into respiratory losses as well as stable and unstable soil C pools. Our results show that genetic modifications to Oilcane did not substantially alter soil C dynamics. Sugarcane and Oilcane litter both led to net soil C gains dominated by an accumulation of the added litter as unstable, particulate organic C (POC). Oilcane litter led to small but significantly greater net soil C gains than Sugarcane litter due to greater POC formation, but the formation of stable, mineral associated organic matter (MAOC) did not differ between crop types. Sugarcane and Oilcane had opposing effects on tissue type where Sugarcane bagasse formed more MAOC, while Oilcane leaves preferentially remained as POC which may have important management implications. These results suggest that genetic modifications to Sugarcane will not significantly impact soil C dynamics; however, this may not be universal to other crops particularly if modifications lead to greater differences in litter chemistry. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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128. Microbiome differences in sugarcane and metabolically engineered oilcane accessions and their implications for bioenergy production.
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Yang, Jihoon, Sooksa-nguan, Thanwalee, Kannan, Baskaran, Cano-Alfanar, Sofia, Liu, Hui, Kent, Angela, Shanklin, John, Altpeter, Fredy, and Howe, Adina
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GENE expression profiling , *PLANT lipids , *TRANSGENE expression , *SUGARCANE , *SUGARCANE growing - Abstract
Oilcane is a metabolically engineered sugarcane (Saccharum spp. hybrid) that hyper-accumulates lipids in its vegetable biomass to provide an advanced feedstock for biodiesel production. The potential impact of hyper-accumulation of lipids in vegetable biomass on microbiomes and the consequences of altered microbiomes on plant growth and lipid accumulation have not been explored so far. Here, we explore differences in the microbiome structure of different oilcane accessions and non-modified sugarcane. 16S SSU rRNA and ITS rRNA amplicon sequencing were performed to compare the characteristics of the microbiome structure from different plant compartments (leaf, stem, root, rhizosphere, and bulk soil) of four greenhouse-grown oilcane accessions and non-modified sugarcane. Significant differences were only observed in the bacterial microbiomes. In leaf and stem microbiomes, more than 90% of the entire microbiome of non-modified sugarcane and oilcane was dominated by similar core taxa. Taxa associated with Proteobacteria led to differences in the non-modified sugarcane and oilcane microbiome structure. While differences were observed between multiple accessions, accession 1566 was notable in that it was consistently observed to differ in its microbial membership than other accessions and had the lowest abundance of taxa associated with plant-growth-promoting bacteria. Accession 1566 is also unique among oilcane accessions in that it has the highest constitutive expression of the WRI1 transgene. The WRI1 transcription factor is known to contribute to significant changes in the global gene expression profile, impacting plant fatty acid biosynthesis and photomorphogenesis. This study reveals for the first time that genetically modified oilcanes associate with distinct microbiomes. Our findings suggest potential relationships between core taxa, biomass yield, and TAG in oilcane accessions and support further research on the relationship between plant genotypes and their microbiomes. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
129. <italic>Agrobacterium</italic>-mediated transformation of recalcitrant hexaploid wheat cultivars using morphogenic regulators and/or expressing effector <italic>AvrPto</italic> with the type III secretion system.
- Author
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Lee, Geon Hee, Kim, Taekyeom, Park, Yong-Jin, Altpeter, Fredy, and Kim, Jae Yoon
- Subjects
- *
REGULATOR genes , *TRANSGENIC plants , *GENETIC transformation , *FOOD supply , *TISSUE culture , *WHEAT breeding , *SECRETION - Abstract
Wheat (
Triticum aestivum L.) is a key crop for the global food supply. Its complex polyploid genome and recalcitrance to tissue culture pose challenges for genetic transformation, especially for elite cultivars. This study aimed to improve transformation efficiency in elite Korean wheat cultivars by integrating morphogenic regulator genes (GRF4–GIF1 ), using an engineeredAgrobacterium tumefaciens strain . By integrating speed breeding to accelerate donor plant growth, we also reduced the time required to generate transgenic plants. Modifying the resting period and incorporatingGRF4–GIF1 significantly improved the outcomes, leading to a transformation efficiency of 4.46% ± 0.93% in Bobwhite cultivar. Application of these methods to Korean elite cultivars also successfully yielded transformations with Keumkang and Baekkang cultivars. Furthermore, using a T3SS AGL-1 strain expressing the type III effectorAvrPto enhanced the transformation efficiency in Baekkang cultivar by 2.27 times (17.7%) compared to the standard AGL-1 strain. Using the protocol as described here, we successfully developed stable transgenic lines of the Korean wheat cultivar, marking a pioneering achievement in Korean wheat molecular breeding. The modified protocol can contribute to wheat genetic research and breeding programs in Korea. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
130. Towards oilcane: preliminary field evaluation of metabolically engineered sugarcane with hyper-accumulation of triacylglycerol in vegetative tissues.
- Author
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Kannan, Baskaran, Liu, Hui, Shanklin, John, and Altpeter, Fredy
- Subjects
- *
ENERGY crops , *AGRICULTURAL productivity , *SUGARCANE growing , *PLANT yields , *BIOMASS , *ATP-binding cassette transporters , *SUGARCANE - Abstract
We recently generated oilcane, a metabolically engineered sugarcane with hyper-accumulation of energy dense triacylglycerol in vegetative tissues. Refinement of this strategy in high biomass crops like sugarcane may result in elevated lipid yields that exceed traditional oilseed crops for biodiesel production. This is the first report of agronomic performance, stable co-expression of lipogenic factors, and TAG accumulation in transgenic sugarcane under field conditions. Co-expression of WRI1; DGAT1, OLE1, and RNAi suppression of PXA1 was stable during the 2-year field evaluation and resulted in TAG accumulation up to 4.4% of leaf DW. This TAG accumulation was 70-fold higher than in non-transgenic sugarcane and more than 2-fold higher than previously reported for the same line under greenhouse conditions. TAG accumulation correlated highest with the expression of WRI1. However, constitutive expression of WRI1 was negatively correlated with biomass accumulation. Transgenic lines without WRI1 expression accumulated TAG up to 1.6% of leaf DW and displayed no biomass yield penalty in the plant cane. These findings confirm sugarcane as a promising platform for the production of vegetative lipids and will be used to inform strategies to maximize future biomass and lipid yields. The main conclusion is that constitutive expression of WRI1 in combination with additional lipogenic factors (DGAT1-2, OLE1, PXA1) in sugarcane under field conditions leads to hyper-accumulation of TAG and reduces biomass yield. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
131. Metabolic engineering of energycane to hyperaccumulate lipids in vegetative biomass.
- Author
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Luo, Guangbin, Cao, Viet Dang, Kannan, Baskaran, Liu, Hui, Shanklin, John, and Altpeter, Fredy
- Subjects
- *
SUGARCANE , *PEARSON correlation (Statistics) , *ENERGY crops , *BIOMASS , *AGRICULTURAL productivity , *LIPIDS - Abstract
Background: The metabolic engineering of high-biomass crops for lipid production in their vegetative biomass has recently been proposed as a strategy to elevate energy density and lipid yields for biodiesel production. Energycane and sugarcane are highly polyploid, interspecific hybrids between Saccharum officinarum and Saccharum spontaneum that differ in the amount of ancestral contribution to their genomes. This results in greater biomass yield and persistence in energycane, which makes it the preferred target crop for biofuel production. Results: Here, we report on the hyperaccumulation of triacylglycerol (TAG) in energycane following the overexpression of the lipogenic factors Diacylglycerol acyltransferase1-2 (DGAT1-2) and Oleosin1 (OLE1) in combination with RNAi suppression of SUGAR-DEPENDENT1 (SDP1) and Trigalactosyl diacylglycerol1 (TGD1). TAG accumulated up to 1.52% of leaf dry weight (DW,) a rate that was 30-fold that of non-modified energycane, in addition to almost doubling the total fatty acid content in leaves to 4.42% of its DW. Pearson's correlation analysis showed that the accumulation of TAG had the highest correlation with the expression level of ZmDGAT1-2, followed by the level of RNAi suppression for SDP1. Conclusions: This is the first report on the metabolic engineering of energycane and demonstrates that this resilient, high-biomass crop is an excellent target for the further optimization of the production of lipids from vegetative tissues. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
132. Metabolic engineering of sugarcane to accumulate energy-dense triacylglycerols in vegetative biomass
- Author
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Altpeter, Fredy [Univ. of Florida, Gainesville, FL (United States). Genetics Inst.]
- Published
- 2015
- Full Text
- View/download PDF
133. CRISPR/Cas-mediated genome editing in sorghum — recent progress, challenges and prospects.
- Author
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Parikh, Aalap, Brant, Eleanor J., Baloglu, Mehmet Cengiz, and Altpeter, Fredy
- Subjects
- *
GENOME editing , *SORGHUM , *PLANT breeding , *CALORIC content of foods , *CROP improvement , *FUNCTIONAL genomics , *CROP rotation - Abstract
Sorghum is a versatile crop with great potential as a sustainable food, feed, and bioenergy source. To mitigate the severely negative impact of climate change and population growth on food and energy security, further elevation of the crops stress tolerance is urgently needed. Genome editing technologies such as CRISPR/Cas have great potential to accelerate functional genomics and crop improvement by supporting targeted modification of almost any crop gene sequence. We describe the recent progress in genome editing of sorghum. In addition, we review remaining challenges and prospects of emerging gene editing technologies for rapid precision breeding of this crop. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
134. Sustainable co-production of plant lipids and cellulosic sugars from transgenic energycane at an industrially relevant scale: A proof of concept for alternative feedstocks.
- Author
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Maitra, Shraddha, Cheng, Ming-Hsun, Liu, Hui, Cao, Viet Dang, Kannan, Baskaran, Long, Stephen P., Shanklin, John, Altpeter, Fredy, and Singh, Vijay
- Subjects
- *
PLANT lipids , *LIGNOCELLULOSE , *PROOF of concept , *CARBON offsetting , *CROP yields , *SUGARS - Abstract
[Display omitted] • Commercially viable alternative feedstock for drop-in fuel and bioproduct production. • Sustainable and dedicated supply of feedstock without competing for food or land. • Proof-of-concept for bioprocessing at an industrially relevant scale. • Field grown energycane-oilcane hyperaccumulated 0.42 MT/ha of vegetative lipids. • 0.38 MT/ha of vegetative lipid was recovered with a recovery efficiency of 88.7% • Green pretreatment prevented lipid degeneration and improved recovery by 18.7% Development of sustainable and scalable technologies to convert lignocellulosic biomass to biofuels is critical to achieving carbon neutrality. The potential of transgenic bioenergy crops as a renewable source of sugars and lipids has been demonstrated at bench-scale. However, scaling up these processes is important for holistic analysis. Here proof-of-concept for chemical-free hydrothermal pretreatment of transgenic energycane-oilcane line L13 at an industrially relevant scale to recover vegetative lipids along with cellulosic sugars is presented. Pilot-scale processing of 97 kg of transgenic energycane-oilcane L13 stems and high solids pretreatment of bagasse enhanced the recovery of cellulosic glucose and xylose by 5-fold as compared to untreated bagasse and helped in the enrichment of vegetative lipids in the biomass residues which allowed its recovery at the end of the bioprocess. Palmitic and oleic acids were the predominant fatty acids (FAs) extracted from stems and leaves. The processing did not affect lipid composition. The efficiency of lipid recovery from untreated biomass was 75.9% which improved to 88.7% upon pretreatment. The vegetative tissues of transgenic energycane-oilcane L13 contained 0.42 metric tons/hectare of lipids. Processing vegetative tissues yielded 0.38 metric tons/hectare of lipids. This approaches an oil yield similar to soybean (global average 0.44 metric tons/hectare) and is almost twice as high as the oil yield from sugarcane engineered to hyperaccumulate lipids (0.20 metric tons/hectare). The study suggests that further optimization by state-of-the-art metabolic engineering and biomass processing can establish transgenic bioenergy crops for commercial drop-in fuel production. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
135. Advances in genomics and genome editing for improving strawberry ( Fragaria ×ananassa ).
- Author
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Vondracek K, Altpeter F, Liu T, and Lee S
- Abstract
The cultivated strawberry, Fragaria ×ananassa , is a recently domesticated fruit species of economic interest worldwide. As such, there is significant interest in continuous varietal improvement. Genomics-assisted improvement, including the use of DNA markers and genomic selection have facilitated significant improvements of numerous key traits during strawberry breeding. CRISPR/Cas-mediated genome editing allows targeted mutations and precision nucleotide substitutions in the target genome, revolutionizing functional genomics and crop improvement. Genome editing is beginning to gain traction in the more challenging polyploid crops, including allo-octoploid strawberry. The release of high-quality reference genomes and comprehensive subgenome-specific genotyping and gene expression profiling data in octoploid strawberry will lead to a surge in trait discovery and modification by using CRISPR/Cas. Genome editing has already been successfully applied for modification of several strawberry genes, including anthocyanin content, fruit firmness and tolerance to post-harvest disease. However, reports on many other important breeding characteristics associated with fruit quality and production are still lacking, indicating a need for streamlined genome editing approaches and tools in Fragaria ×ananassa . In this review, we present an overview of the latest advancements in knowledge and breeding efforts involving CRISPR/Cas genome editing for the enhancement of strawberry varieties. Furthermore, we explore potential applications of this technology for improving other Rosaceous plant species., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2024 Vondracek, Altpeter, Liu and Lee.)
- Published
- 2024
- Full Text
- View/download PDF
136. dCas9-3xSRDX-mediated transcriptional repression in sugarcane.
- Author
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Hooghvorst I and Altpeter F
- Abstract
Key Message: Targeting dCas9 fused with the 3xSRDX effector to the 5'UTR leads to strong repression of magnesium chelatase in highly polyploid sugarcane., (© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
- Published
- 2023
- Full Text
- View/download PDF
137. Generation of a selectable marker free, highly expressed single copy locus as landing pad for transgene stacking in sugarcane.
- Author
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Zhao Y, Kim JY, Karan R, Jung JH, Pathak B, Williamson B, Kannan B, Wang D, Fan C, Yu W, Dong S, Srivastava V, and Altpeter F
- Subjects
- Biofuels, Cell Culture Techniques, Cell Line, Gene Expression Regulation, Plant, Genes, Plant genetics, Genetic Markers, Kanamycin Kinase genetics, Plant Proteins genetics, Gene Editing methods, Genome, Plant, Plants, Genetically Modified genetics, Recombination, Genetic, Saccharum genetics
- Abstract
Key Message: A selectable marker free, highly expressed single copy locus flanked by insulators was created as landing pad for transgene stacking in sugarcane. These events displayed superior transgene expression compared to single-copy transgenic lines lacking insulators. Excision of the selectable marker gene from transgenic sugarcane lines was supported by FLPe/FRT site-specific recombination. Sugarcane, a tropical C4 grass in the genus Saccharum (Poaceae), accounts for nearly 80% of sugar produced worldwide and is also an important feedstock for biofuel production. Generating transgenic sugarcane with predictable and stable transgene expression is critical for crop improvement. In this study, we generated a highly expressed single copy locus as landing pad for transgene stacking. Transgenic sugarcane lines with stable integration of a single copy nptII expression cassette flanked by insulators supported higher transgene expression along with reduced line to line variation when compared to single copy events without insulators by NPTII ELISA analysis. Subsequently, the nptII selectable marker gene was efficiently excised from the sugarcane genome by the FLPe/FRT site-specific recombination system to create selectable marker free plants. This study provides valuable resources for future gene stacking using site-specific recombination or genome editing tools.
- Published
- 2019
- Full Text
- View/download PDF
138. Sugarcane (Saccharum spp. hybrids).
- Author
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Wu H and Altpeter F
- Subjects
- Agrobacterium tumefaciens genetics, Agrobacterium tumefaciens growth & development, Coculture Techniques, Environment, Controlled, Regeneration, Saccharum physiology, Transformation, Genetic, Genetic Engineering methods, Saccharum genetics, Saccharum growth & development
- Abstract
Genetic transformation of sugarcane has a tremendous potential to complement traditional breeding in crop improvement and will likely transform sugarcane into a bio-factory for value-added products. We describe here Agrobacterium tumefaciens-mediated transformation of sugarcane. Embryogenic callus induced from immature leaf whorls was used as target for transformation with the hypervirulent Agrobacterium strain AGL1 carrying a constitutive nptII expression cassette in vector pPZP200. Selection with 30 mg/L geneticin during the callus phase and 30 mg/L paromomycin during regeneration of shoots and roots effectively suppressed the development of non-transgenic plants. This protocol was successful with a commercially important sugarcane cultivar, CP-88-1762, at a transformation efficiency of two independent transgenic plants per g of callus.
- Published
- 2015
- Full Text
- View/download PDF
139. Rye (Secale cereale L.).
- Author
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Altpeter F
- Subjects
- Agrobacterium tumefaciens growth & development, DNA, Bacterial genetics, Drug Resistance genetics, Fertility genetics, Genetic Markers, Genotype, Plants, Genetically Modified embryology, Plants, Genetically Modified microbiology, Secale embryology, Secale immunology, Seeds embryology, Seeds microbiology, Agrobacterium tumefaciens genetics, Gene Transfer Techniques, Plants, Genetically Modified genetics, Secale genetics, Seeds genetics, Transformation, Genetic
- Abstract
Rye (Secale cereale L.) is one of the most recalcitrant plant species for tissue culture and genetic transformation. Embryogenic rye callus loses its ability to regenerate plants quickly in response to high density of Agrobacterium and other stressors. The cocultivation of Agrobacterium and rye immature embryos in liquid medium facilitated washing of the cultures to avoid Agrobacterium overgrowth and allowed a high throughput. More than 40 independent transgenic plants were regenerated with one to four Southern-positive, independent events from 100 inoculated immature embryos. Agrobacterium strain AGL0 supported stable integration of a constitutive nptII selectable marker expression cassette into the genome of rye inbred line L22, as indicated by regeneration of plantlets on paromomycin-containing culture medium, Southern blot, Western blot, and the analysis of T-DNA::plant DNA boundary sequences. Transgenic plants were phenotypically normal and fully fertile, which might be a consequence of the short time in tissue culture.
- Published
- 2006
- Full Text
- View/download PDF
140. Perennial Ryegrass (Lolium perenne L.).
- Author
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Altpeter F
- Subjects
- Agrobacterium tumefaciens cytology, Coculture Techniques, Culture Media, Gene Transfer Techniques, Genes, Reporter, Genetic Markers, Genetic Vectors, Genotype, Green Fluorescent Proteins analysis, Green Fluorescent Proteins genetics, Lolium growth & development, Plants, Genetically Modified, Tissue Culture Techniques, Agrobacterium tumefaciens genetics, Lolium genetics, Transformation, Genetic
- Abstract
A protocol that facilitates rapid establishment of Agrobacterium-mediated transformation for perennial ryegrass is described. The synthetic green fluorescent protein (sgfpS65T) reporter gene is introduced in combination with the nptII selectable marker gene into axillary bud derived embryogenic calli of perennial ryegrass (Lolium perenne L.) by co-cultivation with Agrobacterium tumefaciens strain AGL0 harboring binary vector pYF132. Following the co-cultivation calli are cultured for 48 h in liquid callus medium containing timentin at 10 degrees C and 70 rpm, which reduces Agrobacterium overgrowth. Using green fluorescent protein (GFP) as a nondestructive visual marker allows identification of responsive genotypes and transgenic cell clusters at an early stage. GFP screening is combined with paromomycin selection to suppress wild type cells. Transgenic plantlets ready to transfer to soil are obtained within 4 mo of explant culture. Between 8 and 16% of the Agrobacterium-inoculated calli regenerate independent, Southern positive transgenic plants. Reproducibility and efficiency in this perennial ryegrass transformation protocols is controlled by multiple factors including genotype dependent tissue culture and gene transfer response, a short tissue culture-and-selection period and the efficient suppression of Agrobacterium following Agrobacterium-mediated gene transfer.
- Published
- 2006
- Full Text
- View/download PDF
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