143 results on '"Alghamdi, Norah"'
Search Results
102. Lung Segmentation-Based Pulmonary Disease Classification Using Deep Neural Networks
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Zaidi, S. Zainab Yousuf, primary, Akram, M. Usman, additional, Jameel, Amina, additional, and Alghamdi, Norah Saleh, additional
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- 2021
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103. Novel Algorithm Utilizing Deep Learning for Enhanced Arabic Lip Reading Recognition
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Khafaga, Doaa Sami, primary, Mahmoud, Hanan A. Hosni, additional, Alghamdi, Norah S., additional, and Albraikan, Amani A., additional
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- 2021
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104. Emerging of composition variations of SARS-CoV-2 spike protein and human ACE2 contribute to the level of infection: in silico approaches.
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AlGhamdi, Norah Ali, Alsuwat, Hind Saleh, Borgio, J. Francis, and AbdulAzeez, Sayed
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- 2022
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105. Time-Efficient Fire Detection Convolutional Neural Network Coupled with Transfer Learning.
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Hosni Mahmoud, Hanan A., Alharbi, Amal H., and Alghamdi, Norah S.
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CONVOLUTIONAL neural networks ,FIRE detectors ,VIDEO surveillance ,DEEP learning ,COMPUTER performance - Abstract
The detection of fires in surveillance videos are usually done by utilizing deep learning. In Spite of the advances in processing power, deep learning methods usually need extensive computations and require high memory resources. This leads to restriction in real time fire detection. In this research, we present a time-efficient fire detection convolutional neural network coupled with transfer learning for surveillance systems. The model utilizes CNN architecture with reasonable computational time that is deemed possible for real time applications. At the same time, the model will not compromise accuracy for time efficiency by tuning the model with respect to fire data. Extensive experiments are carried out on real fire data from benchmarks datasets. The experiments prove the accuracy and time efficiency of the proposed model. Also, validation of the model in fire detection in surveillance videos is proved and the performance of the model is compared to state-of-the-art fire detection models. [ABSTRACT FROM AUTHOR]
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- 2022
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106. Real Time Feature Extraction Deep-CNN for Mask Detection.
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Hosni Mahmoud, Hanan A., Alghamdi, Norah S., and Alharbi, Amal H.
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FEATURE extraction ,ARTIFICIAL neural networks ,OBJECT recognition (Computer vision) ,COVID-19 ,CONVOLUTIONAL neural networks ,PUBLIC spaces ,SIGNAL convolution - Abstract
COVID-19 pandemic outbreak became one of the serious threats to humans. As there is no cure yet for this virus, we have to control the spread of Coronavirus through precautions. One of the effective precautions as announced by the World Health Organization is mask wearing. Surveillance systems in crowded places can lead to detection of people wearing masks. Therefore, it is highly urgent for computerized mask detection methods that can operate in real-time. As for now, most countries demand mask-wearing in public places to avoid the spreading of this virus. In this paper, we are presenting an object detection technique using a single camera, which presents real-time mask detection in closed places. Our contributions are as follows: 1) presenting a real time feature extraction module to improve the detection computational time; 2) enhancing the extracted features learned from the deep convolutional neural network models to improve small objects detection. The proposed model is a lightweight backbone CNN which ensures real time mask detection. The accuracy is also enhanced by utilizing the feature enhancement module after some of the convolution layers in the CNN. We performed extensive experiments comparing our model to the single-shot detector (SDD) and YoloV3 neural network models, which are the state-of-the-art models in the literature. The comparison shows that the result of our proposed model achieves 95.9% accuracy which is 21% higher than SSD and 17.7% higher than YoloV3 accuracy. We also conducted experiments testing the mask detection speed. It was found that our model achieves average detection time of 0.85s for images of size 1024 × 1024 pixels, which is better than the speed achieved by SSD but slightly less than the speed of YoloV3. [ABSTRACT FROM AUTHOR]
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- 2022
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107. A deep learning approach for the classification of TB from NIH CXR dataset.
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Zaidi, S. Zainab Yousuf, Akram, M. Usman, Jameel, Amina, and Alghamdi, Norah Saleh
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DEEP learning ,TUBERCULOSIS diagnosis ,CHEST X rays ,IMAGE processing ,EXPERIMENTAL design - Abstract
In this research, a novel customized deep learning model is proposed to detect Tuberculosis (TB) from chest X‐rays (CXR). The model is utilized for three experimentations: (i) classification of CXR image as healthy or TB infected, (ii) sub‐classification of infected images to TB specific manifestations, and (iii) classification of CXR image to thoracic disease manifestations. The National Institute of Health (NIH) CXR is used for experimentation. For the first two experimentations, the subset of the dataset is used containing only 10 TB specific manifestations, whereas, the entire NIH CXR dataset is used for the third experiment. The F1 score for binary classification of TB in experiment 1 is calculated as 0.92 which is higher than the average F1 score of the radiologists. The average accuracy for classifying TB specific manifestations in experiment 2 is recorded as 0.84. Finally, the average accuracy of the thoracic disease classification is recorded as 0.82 in experiment 3. The proposed system outperformed the existing approaches reporting higher AUC for each manifestation. Whereas, to the best of knowledge it is the first such attempt on NIH CXR dataset for TB and TB specific manifestation classification and the proposed system showed promising results. [ABSTRACT FROM AUTHOR]
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- 2022
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108. Breast Cancer Detection Through Feature Clustering and Deep Learning.
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Hosni Mahmoud, Hanan A., Alharbi, Amal H., and Alghamdi, Norah S.
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EARLY detection of cancer ,DEEP learning ,CONVOLUTIONAL neural networks ,BREAST cancer ,MACHINE learning ,ALGORITHMS - Abstract
In this paper we propose a computerized breast cancer detection and breast masses classification system utilizing mammograms. The motivation of the proposed method is to detect breast cancer tumors in early stages with more accuracy and less negative false cases. Our proposed method utilizes clustering of different features by segmenting the breast mammogram and then extracts deep features using the presented Convolution Neural Network (CNN). The extracted features are then combined with subjective features such as shape, texture and density. The combined features are then utilized by the Extreme Learning Machine Clustering (ELMC) algorithm to combine segments together to identify the breast mass Region of Interest (ROI). We present a detection method utilizing the ELMC clustering technique. Building a multi-feature set, the ELMC classifier is utilized to perform classification of normal, benign and cancer breast masses. Feature fusion is performed on the extracted shape, texture and density features forming a fusion feature set. In the automated detection phase, we utilize the fusion feature sets for classification. Extensive experimentation has been carried out to validate the ability of our proposed method. We utilized a dataset of 600 female mammograms. The experiments measure the accuracy of our proposed detection and classification method. The CNN coupled with the Extreme Learning Machine Clustering algorithm achieves the highest accuracy, sensitivity, specificity and ROC measures when combined with a multi-feature set. The model achieves 98.53% cancer detection accuracy, 95.6% benign detection accuracy and 95% for normal cases. [ABSTRACT FROM AUTHOR]
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- 2022
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109. A graph neural network model to estimate cell-wise metabolic flux using single cell RNA-seq data
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Alghamdi, Norah, primary, Chang, Wennan, additional, Dang, Pengtao, additional, Lu, Xiaoyu, additional, Wan, Changlin, additional, Gampala, Silpa, additional, Huang, Zhi, additional, Wang, Jiashi, additional, Ma, Qin, additional, Zang, Yong, additional, Fishel, Melissa, additional, Cao, Sha, additional, and Zhang, Chi, additional
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- 2020
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110. Computer Aided Autism Diagnosis Using Diffusion Tensor Imaging
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Elnakieb, Yaser A., primary, Ali, Mohamed T., additional, Soliman, Ahmed, additional, Mahmoud, Ali H., additional, Shalaby, Ahmed M., additional, Alghamdi, Norah Saleh, additional, Ghazal, Mohammed, additional, Khalil, Ashraf, additional, Switala, Andrew, additional, Keynton, Robert S., additional, Barnes, Gregory Neal, additional, and El-Baz, Ayman, additional
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- 2020
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111. A Secure Framework for Authentication and Encryption Using Improved ECC for IoT-Based Medical Sensor Data
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Khan, Mohammad Ayoub, primary, Quasim, Mohammad Tabrez, additional, Alghamdi, Norah Saleh, additional, and Khan, Mohammad Yahiya, additional
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- 2020
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112. Predicting Depression Symptoms in an Arabic Psychological Forum
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Alghamdi, Norah Saleh, primary, Hosni Mahmoud, Hanan A., additional, Abraham, Ajith, additional, Alanazi, Samar Awadh, additional, and Garcia-Hernandez, Laura, additional
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- 2020
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113. Correction: Effects of interferons and double-stranded RNA on human prostate cancer cell apoptosis
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Tan, Haiyan, primary, Zeng, Chun, additional, Xie, Junbo, additional, Alghamdi, Norah J., additional, Song, Ya, additional, Zhang, Hongbing, additional, Zhou, Aimin, additional, and Jin, Di, additional
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- 2019
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114. Cobalt(II) Diphenylazodioxide Complexes Induce Apoptosis in SK-HEP-1 Cells
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Alghamdi, Norah J., primary, Balaraman, Lakshmi, additional, Emhoff, Kylin A., additional, Salem, Ahmed M. H., additional, Wei, Ruhan, additional, Zhou, Aimin, additional, and Boyd, W. Christopher, additional
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- 2019
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115. Monitoring Mental Health Using Smart Devices with Text Analytical Tool
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Alghamdi, Norah Saleh, primary
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- 2019
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116. Health Data Warehouses: Reviewing Advanced Solutions for Medical Knowledge Discovery
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Alghamdi, Norah, primary
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- 2019
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117. Evaluation of Classification Models for Predicting Mortality Rate Using Thyroid Cancer Data
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Alghamdi, Norah Saleh, primary
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- 2019
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118. Energy-Efficient and Blockchain-Enabled Model for Internet of Things (IoT) in Smart Cities.
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Alghamdi, Norah Saleh and Khan, Mohammad Ayoub
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SMART cities ,INTERNET of things ,LINEAR network coding ,WIRELESS sensor networks ,SENSOR networks ,INTELLIGENT sensors - Abstract
Wireless sensor networks (WSNs) and Internet of Things (IoT) have gained more popularity in recent years as an underlying infrastructure for connected devices and sensors in smart cities. The data generated from these sensors are used by smart cities to strengthen their infrastructure, utilities, and public services. WSNs are suitable for long periods of data acquisition in smart cities. To make the networks of smart cities more reliable for sensitive information, the blockchain mechanism has been proposed. The key issues and challenges of WSNs in smart cities is efficiently scheduling the resources; leading to extending the network lifetime of sensors. In this paper, a linear network coding (LNC) for WSNs with blockchain- enabled IoT devices has been proposed. The consumption of energy is reduced for each node by applying LNC. The efficiency and the reliability of the proposed model are evaluated and compared to those of the existing models. Results from the simulation demonstrate that the proposed model increases the efficiency in terms of the number of live nodes, packet delivery ratio, throughput, and the optimized residual energy compared to other current techniques. [ABSTRACT FROM AUTHOR]
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- 2021
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119. Improving the performance of processing recursive structures of XML path queries and data
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Alghamdi, Norah Saleh, primary
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- 2016
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120. Effects of interferons and double-stranded RNA on human prostate cancer cell apoptosis
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Tan, Haiyan, primary, Zeng, Chun, additional, Xie, Junbo, additional, Alghamdi, Norah J., additional, Song, Ya, additional, Zhang, Hongbing, additional, Zhou, Aimin, additional, and Jin, Di, additional
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- 2015
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121. Efficient Processing of Queries over Recursive XML Data
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Alghamdi, Norah Saleh, primary, Rahayu, Wenny, additional, and Pardede, Eric, additional
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- 2015
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122. Semantic-based Structural and Content indexing for the efficient retrieval of queries over large XML data repositories
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Alghamdi, Norah Saleh, primary, Rahayu, Wenny, additional, and Pardede, Eric, additional
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- 2014
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123. OXDP & OXiP: the notion of objects for efficient large XML data queries
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Alghamdi, Norah Saleh, primary, Rahayu, Wenny, additional, and Pardede, Eric, additional
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- 2012
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124. Object-Based Methodology for XML Data Partitioning (OXDP)
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Alghamdi, Norah Saleh, primary, Rahayu, Wenny, additional, and Pardede, Eric, additional
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- 2011
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125. Object-Based Semantic Partitioning for XML Twig Query Optimization.
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Alghamdi, Norah Saleh, Rahayu, Wenny, and Pardede, Eric
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- 2013
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126. An Aggregated Mutual Information Based Feature Selection with Machine Learning Methods for Enhancing IoT Botnet Attack Detection.
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Al-Sarem, Mohammed, Saeed, Faisal, Alkhammash, Eman H., and Alghamdi, Norah Saleh
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BOTNETS ,FEATURE selection ,MACHINE learning ,INTERNET of things ,DEEP learning ,SUPPORT vector machines - Abstract
Due to the wide availability and usage of connected devices in Internet of Things (IoT) networks, the number of attacks on these networks is continually increasing. A particularly serious and dangerous type of attack in the IoT environment is the botnet attack, where the attackers can control the IoT systems to generate enormous networks of "bot" devices for generating malicious activities. To detect this type of attack, several Intrusion Detection Systems (IDSs) have been proposed for IoT networks based on machine learning and deep learning methods. As the main characteristics of IoT systems include their limited battery power and processor capacity, maximizing the efficiency of intrusion detection systems for IoT networks is still a research challenge. It is important to provide efficient and effective methods that use lower computational time and have high detection rates. This paper proposes an aggregated mutual information-based feature selection approach with machine learning methods to enhance detection of IoT botnet attacks. In this study, the N-BaIoT benchmark dataset was used to detect botnet attack types using real traffic data gathered from nine commercial IoT devices. The dataset includes binary and multi-class classifications. The feature selection method incorporates Mutual Information (MI) technique, Principal Component Analysis (PCA) and ANOVA f-test at finely-granulated detection level to select the relevant features for improving the performance of IoT Botnet classifiers. In the classification step, several ensemble and individual classifiers were used, including Random Forest (RF), XGBoost (XGB), Gaussian Naïve Bayes (GNB), k-Nearest Neighbor (k-NN), Logistic Regression (LR) and Support Vector Machine (SVM). The experimental results showed the efficiency and effectiveness of the proposed approach, which outperformed other techniques using various evaluation metrics. [ABSTRACT FROM AUTHOR]
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- 2022
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127. THE ROLE OF RNASE L IN THE KIDNEY FUNCTION
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Alghamdi, Norah
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- Chemistry, Immunology, Analytical Chemistry, Anatomy and Physiology, Animal Sciences, Animals, Biochemistry, Biology, Biomedical Research, Cellular Biology, RNase L, kidney, folic acid, acute kidney injury, creatinine, EGF, ADAM10, AKI
- Abstract
Renal diseases are a prevalent problem. The data released by the US Renal Data System show increasing of the incidence in acute kidney injury (AKI) at a rate of 14 % since 2001. AKI severity results in patient morbidity and mortality. Studies in the animal model of AKI reveal that epidermal growth factor (EGF) enhances recovery of renal function and structure after AKI by activating its receptor (EGF) that promotes renal tubular cell proliferation. However, it has been also reported that EGF/EGFR activation contributes to the development and progression of renal diseases such as obstructive nephropathy, diabetic nephropathy, hypertensive nephropathy, and glomerulonephritis through mechanisms involved in induction of tubular atrophy, overproduction of inflammatory factors, and/or promotion of glomerular and vascular injury. 2-5A dependent RNase L (RNase L) is an interferon (IFN)-inducible enzyme that plays an important role in the molecular mechanisms of IFN against viral and microbial infection. Studies have shown that RNase L has diverse and critical cellular functions, including cell differentiation, proliferation, senescence and apoptosis, autophagy, tumorigenesis, and the control of the innate immune response. By using RNase L knockout mice, we found that the absence of RNase L enhances kidney recovery from AKI. The lack of RNase L exclusively blocks EGF excretion from the kidney into urine. Mechanistic study revealed that A Disinterring and metalloproteinase (ADAM10), the enzyme responsible of EGF cleavage in kidney, is down regulated in the kidney of RNase L deficient mice. Interestingly, activation of EGFR which enhances kidney recovery after AKI was observed in RNase L deficient mice. Moreover, the level of serum creatinine, an important biomarker to assess kidney function, was significantly decreased in RNase L null mice. This study suggests that RNase L may play an important role in the kidney function, which is a novel target for treating kidney disorders such as AKI. Our findings suggest that RNase L may play an important role in kidney recovery from AKI by activating the EGF/EGFR/AKT signaling pathway.
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- 2019
128. Artificial intelligence‐enabled smart city management using multi‐objective optimization strategies.
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Pinki, Kumar, Rakesh, Vimal, S., Alghamdi, Norah Saleh, Dhiman, Gaurav, Pasupathi, Subbulakshmi, Sood, Aarna, Viriyasitavat, Wattana, Sapsomboon, Assadaporn, and Kaur, Amandeep
- Abstract
This article outlines an integrated strategy that combines fuzzy multi‐objective programming and a multi‐criteria decision‐making framework to achieve a number of transportation system management‐related objectives. To rank fleet cars using various criteria enhancement, the Fuzzy technique for order of preference by resemblance to optimum solution are initially integrated. We then offer a novel Multi‐Objective Possibilistic Linear Programming (MOPLP) model, based on the rankings of the vehicles, to determine the number of vehicles chosen for the work while taking into consideration the constraints placed on them. The search for optimal solutions to MOPs has benefited from the decades‐long development of classical optimisation techniques. As a result of its potential for use in the real world, multi‐objective optimisation (MOO) under uncertainty has gained traction in recent years. Recently, fuzzy set theory has been used to solve challenges in multi‐objective linear programming. In this paper, we present a method for solving MOPs that makes use of both linear and non‐linear membership functions to maximize user happiness. A hypothetical case study of transportation issue is taken here. This innovative approach improves management for the betterment of transportation networks in smart cities. The method is a more robust and versatile approach to the complex difficulties of contemporary urban transportation because it incorporates the TOPSIS method for vehicle ranking and then using Distance Operator and variable Membership Functions in fuzzy goal programming operation on the selected vehicles. The results provide valuable insights into the strengths and limitations of each technique, facilitating informed decision‐making in real‐world optimization scenarios. [ABSTRACT FROM AUTHOR]
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- 2024
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129. Longitudinal Relationship between Idylla Plasma ctBRAF V600 Mutation Detection and Tumor Burden in Patients with Metastatic Melanoma.
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Linder, Mark William, Egger, Michael E., Van Meter, Tracy, Rai, Shesh N., Valdes, Roland, Hall, Melissa Barousse, Wu, Xiaoyong, Alghamdi, Norah, and Chesney, Jason A.
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- *
CIRCULATING tumor DNA , *COMPUTED tomography , *GENETIC mutation , *BRAF genes , *POLYMERASE chain reaction , *SOMATIC mutation , *METASTASIS - Abstract
Background: Circulating tumor DNA (ctDNA) may complement radiography for interim assessment of patients with cancer. Objective: Our objective was to explore the relationship between changes in plasma ctDNA versus radiographic imaging among patients with metastatic melanoma. Methods: Using the Idylla system, we measured B-Raf proto-oncogene (BRAF) V600 ctDNA in plasma from 15 patients with BRAF V600E/K-positive primary tumors undergoing standard-of-care monitoring, including cross-sectional computed tomography (CT) imaging. BRAF V600 mutant allele frequency (%MAF) was calculated from the Idylla Cq values and directly measured using droplet digital polymerase chain reaction (ddPCR). Results: The Idylla ctDNA assay demonstrated 91% sensitivity, 96% specificity, 91% positive predictive value, and 96% negative predictive value for the presence of > 93 mm metastatic disease. Qualitative ctDNA results corresponded to changes in RECIST (Response Evaluation Criteria in Solid Tumors) 1.1 status determined by CT imaging in 11 of 15 subjects (73%). Calculated %MAF results correlated with ddPCR (R2 = 0.94) and provided evidence of progressive disease 55 and 97 days in advance of CT imaging for two subjects with persistently positive qualitative results. Conclusions: Overall, interim ctDNA results provided evidence of partial response or progressive disease an average of 82 days before radiography. This pilot study supports the feasibility of using the Idylla plasma BRAF V600 ctDNA assay as a complement to CT scanning for routine monitoring of therapeutic response. Somatic mutation quantification based on Cq values shows promise for identifying disease progression and warrants further validation. [ABSTRACT FROM AUTHOR]
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- 2021
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130. A power prediction approach for a solar-powered aerial vehicle enhanced by stacked machine learning technique.
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Sehrawat, Neha, Vashisht, Sahil, Singh, Amritpal, Dhiman, Gaurav, Viriyasitavat, Wattana, and Alghamdi, Norah Saleh
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- *
MACHINE learning , *ENERGY harvesting , *SOLAR energy , *SOLAR panels , *DRONE aircraft , *ELECTRICITY - Abstract
This study aims to enhance the solar energy harvesting capabilities of Unmanned Aerial Vehicles (UAVs), with a focus on integrating solar power to improve overall energy harvesting systems. The proposed method combines two independent renewable systems to extract electricity from the environment. UAV wings equipped with solar panels capture solar energy, employing optimal power point tracking for increased efficiency. Simulation results utilize an ensemble machine learning algorithm, incorporating environmental variables and UAV data to predict solar power output. A comparative analysis involving various machine learning algorithms provides additional insights gleaned from the UAV dataset. [ABSTRACT FROM AUTHOR]
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- 2024
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131. A deep learning-based approach for automatic segmentation and quantification of the left ventricle from cardiac cine MR images.
- Author
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Abdeltawab, Hisham, Khalifa, Fahmi, Taher, Fatma, Alghamdi, Norah Saleh, Ghazal, Mohammed, Beache, Garth, Mohamed, Tamer, Keynton, Robert, and El-Baz, Ayman
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HEART ventricles , *ARTIFICIAL neural networks , *LEFT heart ventricle , *MAGNETIC resonance imaging , *DEEP learning , *IMAGE segmentation , *MYOCARDIUM - Abstract
• The implementation of a novel fully automated method for the segmentation of LV cavity and myocardium and the estimation of physiological heart parameters from short-axis cine cardiac MR images. • A fully convolutional neural networks-based approach that has achieved competitive segmentation and LV quantification results when applied on a publicly available dataset (ACDC-2017). • A new fully convolutional neural network that has several bottleneck layers that refer to different representation to the input. • During cardiac segmentation, a novel loss function called radial loss that minimizes the difference between the predicted LV contours and the ground truth contours was incorporated with the cross-entropy loss. Cardiac MRI has been widely used for noninvasive assessment of cardiac anatomy and function as well as heart diagnosis. The estimation of physiological heart parameters for heart diagnosis essentially require accurate segmentation of the Left ventricle (LV) from cardiac MRI. Therefore, we propose a novel deep learning approach for the automated segmentation and quantification of the LV from cardiac cine MR images. We aim to achieve lower errors for the estimated heart parameters compared to the previous studies by proposing a novel deep learning segmentation method. Our framework starts by an accurate localization of the LV blood pool center-point using a fully convolutional neural network (FCN) architecture called FCN1. Then, a region of interest (ROI) that contains the LV is extracted from all heart sections. The extracted ROIs are used for the segmentation of LV cavity and myocardium via a novel FCN architecture called FCN2. The FCN2 network has several bottleneck layers and uses less memory footprint than conventional architectures such as U-net. Furthermore, a new loss function called radial loss that minimizes the distance between the predicted and true contours of the LV is introduced into our model. Following myocardial segmentation, functional and mass parameters of the LV are estimated. Automated Cardiac Diagnosis Challenge (ACDC-2017) dataset was used to validate our framework, which gave better segmentation, accurate estimation of cardiac parameters, and produced less error compared to other methods applied on the same dataset. Furthermore, we showed that our segmentation approach generalizes well across different datasets by testing its performance on a locally acquired dataset. To sum up, we propose a deep learning approach that can be translated into a clinical tool for heart diagnosis. [ABSTRACT FROM AUTHOR]
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- 2020
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132. Advanced OCTA imaging segmentation: Unsupervised, non-linear retinal vessel detection using modified self-organizing maps and joint MGRF modeling.
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Alksas A, Sharafeldeen A, Balaha HM, Haq MZ, Mahmoud A, Ghazal M, Alghamdi NS, Alhalabi M, Yousaf J, Sandhu H, and El-Baz A
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- Humans, Image Processing, Computer-Assisted methods, Markov Chains, Retinal Diseases diagnostic imaging, Models, Statistical, Diagnosis, Computer-Assisted methods, Angiography methods, Retinal Vessels diagnostic imaging, Tomography, Optical Coherence methods, Algorithms
- Abstract
Background and Objective: This paper proposes a fully automated and unsupervised stochastic segmentation approach using two-level joint Markov-Gibbs Random Field (MGRF) to detect the vascular system from retinal Optical Coherence Tomography Angiography (OCTA) images, which is a critical step in developing Computer-Aided Diagnosis (CAD) systems for detecting retinal diseases., Methods: Using a new probabilistic model based on a Linear Combination of Discrete Gaussian (LCDG), the first level models the appearance of OCTA images and their spatially smoothed images. The parameters of the LCDG model are estimated using a modified Expectation Maximization (EM) algorithm. The second level models the maps of OCTA images, including the vascular system and other retina tissues, using MGRF with analytically estimated parameters from the input images. The proposed segmentation approach employs modified self-organizing maps as a MAP-based optimizer maximizing the joint likelihood and handles the Joint MGRF model in a new, unsupervised way. This approach deviates from traditional stochastic optimization approaches and leverages non-linear optimization to achieve more accurate segmentation results., Results: The proposed segmentation framework is evaluated quantitatively on a dataset of 204 subjects. Achieving 0.92 ± 0.03 Dice similarity coefficient, 0.69 ± 0.25 95-percentile bidirectional Hausdorff distance, and 0.93 ± 0.03 accuracy, confirms the superior performance of the proposed approach., Conclusions: The conclusions drawn from the study highlight the superior performance of the proposed unsupervised and fully automated segmentation approach in detecting the vascular system from OCTA images. This approach not only deviates from traditional methods but also achieves more accurate segmentation results, demonstrating its potential in aiding the development of CAD systems for detecting retinal diseases., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
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- 2024
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133. Neurogliaform Cells Exhibit Laminar-specific Responses in the Visual Cortex and Modulate Behavioral State-dependent Cortical Activity.
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Huang S, Rizzo D, Wu SJ, Xu Q, Ziane L, Alghamdi N, Stafford DA, Daigle TL, Tasic B, Zeng H, Ibrahim LA, and Fishell G
- Abstract
Neurogliaform cells are a distinct type of GABAergic cortical interneurons known for their 'volume transmission' output property. However, their activity and function within cortical circuits remain unclear. Here, we developed two genetic tools to target these neurons and examine their function in the primary visual cortex. We found that the spontaneous activity of neurogliaform cells positively correlated with locomotion. Silencing these neurons increased spontaneous activity during locomotion and impaired visual responses in L2/3 pyramidal neurons. Furthermore, the contrast-dependent visual response of neurogliaform cells varies with their laminar location and is constrained by their morphology and input connectivity. These findings demonstrate the importance of neurogliaform cells in regulating cortical behavioral state-dependent spontaneous activity and indicate that their functional engagement during visual stimuli is influenced by their laminar positioning and connectivity., Competing Interests: Additional Declarations: Yes there is potential Competing Interest. The senior author is a founder of Regel Therapeutics
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- 2024
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134. Prostate Cancer Diagnosis via Visual Representation of Tabular Data and Deep Transfer Learning.
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El-Melegy M, Mamdouh A, Ali S, Badawy M, El-Ghar MA, Alghamdi NS, and El-Baz A
- Abstract
Prostate cancer (PC) is a prevalent and potentially fatal form of cancer that affects men globally. However, the existing diagnostic methods, such as biopsies or digital rectal examination (DRE), have limitations in terms of invasiveness, cost, and accuracy. This study proposes a novel machine learning approach for the diagnosis of PC by leveraging clinical biomarkers and personalized questionnaires. In our research, we explore various machine learning methods, including traditional, tree-based, and advanced tabular deep learning methods, to analyze tabular data related to PC. Additionally, we introduce the novel utilization of convolutional neural networks (CNNs) and transfer learning, which have been predominantly applied in image-related tasks, for handling tabular data after being transformed to proper graphical representations via our proposed Tab2Visual modeling framework. Furthermore, we investigate leveraging the prediction accuracy further by constructing ensemble models. An experimental evaluation of our proposed approach demonstrates its effectiveness in achieving superior performance attaining an F1-score of 0.907 and an AUC of 0.911. This offers promising potential for the accurate detection of PC without the reliance on invasive and high-cost procedures.
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- 2024
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135. Precise Prostate Cancer Assessment Using IVIM-Based Parametric Estimation of Blood Diffusion from DW-MRI.
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Balaha HM, Ayyad SM, Alksas A, Shehata M, Elsorougy A, Badawy MA, Abou El-Ghar M, Mahmoud A, Alghamdi NS, Ghazal M, Contractor S, and El-Baz A
- Abstract
Prostate cancer is a significant health concern with high mortality rates and substantial economic impact. Early detection plays a crucial role in improving patient outcomes. This study introduces a non-invasive computer-aided diagnosis (CAD) system that leverages intravoxel incoherent motion (IVIM) parameters for the detection and diagnosis of prostate cancer (PCa). IVIM imaging enables the differentiation of water molecule diffusion within capillaries and outside vessels, offering valuable insights into tumor characteristics. The proposed approach utilizes a two-step segmentation approach through the use of three U-Net architectures for extracting tumor-containing regions of interest (ROIs) from the segmented images. The performance of the CAD system is thoroughly evaluated, considering the optimal classifier and IVIM parameters for differentiation and comparing the diagnostic value of IVIM parameters with the commonly used apparent diffusion coefficient (ADC). The results demonstrate that the combination of central zone (CZ) and peripheral zone (PZ) features with the Random Forest Classifier (RFC) yields the best performance. The CAD system achieves an accuracy of 84.08% and a balanced accuracy of 82.60%. This combination showcases high sensitivity (93.24%) and reasonable specificity (71.96%), along with good precision (81.48%) and F1 score (86.96%). These findings highlight the effectiveness of the proposed CAD system in accurately segmenting and diagnosing PCa. This study represents a significant advancement in non-invasive methods for early detection and diagnosis of PCa, showcasing the potential of IVIM parameters in combination with machine learning techniques. This developed solution has the potential to revolutionize PCa diagnosis, leading to improved patient outcomes and reduced healthcare costs.
- Published
- 2024
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136. A non-invasive AI-based system for precise grading of anosmia in COVID-19 using neuroimaging.
- Author
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Balaha HM, Elgendy M, Alksas A, Shehata M, Alghamdi NS, Taher F, Ghazal M, Ghoneim M, Abdou EH, Sherif F, Elgarayhi A, Sallah M, Abdelbadie Salem M, Kamal E, Sandhu H, and El-Baz A
- Abstract
COVID-19 (Coronavirus), an acute respiratory disorder, is caused by SARS-CoV-2 (coronavirus severe acute respiratory syndrome). The high prevalence of COVID-19 infection has drawn attention to a frequent illness symptom: olfactory and gustatory dysfunction. The primary purpose of this manuscript is to create a Computer-Assisted Diagnostic (CAD) system to determine whether a COVID-19 patient has normal, mild, or severe anosmia. To achieve this goal, we used fluid-attenuated inversion recovery (FLAIR) Magnetic Resonance Imaging (FLAIR-MRI) and Diffusion Tensor Imaging (DTI) to extract the appearance, morphological, and diffusivity markers from the olfactory nerve. The proposed system begins with the identification of the olfactory nerve, which is performed by a skilled expert or radiologist. It then proceeds to carry out the subsequent primary steps: (i) extract appearance markers (i.e., 1 s t and 2 n d order markers), morphology/shape markers (i.e., spherical harmonics), and diffusivity markers (i.e., Fractional Anisotropy (FA) & Mean Diffusivity (MD)), (ii) apply markers fusion based on the integrated markers, and (iii) determine the decision and corresponding performance metrics based on the most-promising classifier. The current study is unusual in that it ensemble bags the learned and fine-tuned ML classifiers and diagnoses olfactory bulb (OB) anosmia using majority voting. In the 5-fold approach, it achieved an accuracy of 94.1%, a balanced accuracy (BAC) of 92.18%, precision of 91.6%, recall of 90.61%, specificity of 93.75%, F1 score of 89.82%, and Intersection over Union (IoU) of 82.62%. In the 10-fold approach, stacking continued to demonstrate impressive results with an accuracy of 94.43%, BAC of 93.0%, precision of 92.03%, recall of 91.39%, specificity of 94.61%, F1 score of 91.23%, and IoU of 84.56%. In the leave-one-subject-out (LOSO) approach, the model continues to exhibit notable outcomes, achieving an accuracy of 91.6%, BAC of 90.27%, precision of 88.55%, recall of 87.96%, specificity of 92.59%, F1 score of 87.94%, and IoU of 78.69%. These results indicate that stacking and majority voting are crucial components of the CAD system, contributing significantly to the overall performance improvements. The proposed technology can help doctors assess which patients need more intensive clinical care., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Author(s).)
- Published
- 2024
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137. Transformer-based framework for multi-class segmentation of skin cancer from histopathology images.
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Imran M, Islam Tiwana M, Mohsan MM, Alghamdi NS, and Akram MU
- Abstract
Introduction: Non-melanoma skin cancer comprising Basal cell carcinoma (BCC), Squamous cell carcinoma (SCC), and Intraepidermal carcinoma (IEC) has the highest incidence rate among skin cancers. Intelligent decision support systems may address the issue of the limited number of subject experts and help in mitigating the parity of health services between urban centers and remote areas., Method: In this research, we propose a transformer-based model for the segmentation of histopathology images not only into inflammation and cancers such as BCC, SCC, and IEC but also to identify skin tissues and boundaries that are important in decision-making. Accurate segmentation of these tissue types will eventually lead to accurate detection and classification of non-melanoma skin cancer. The segmentation according to tissue types and their visual representation before classification enhances the trust of pathologists and doctors being relatable to how most pathologists approach this problem. The visualization of the confidence of the model in its prediction through uncertainty maps is also what distinguishes this study from most deep learning methods., Results: The evaluation of proposed system is carried out using publicly available dataset. The application of our proposed segmentation system demonstrated good performance with an F1 score of 0.908, mean intersection over union (mIoU) of 0.653, and average accuracy of 83.1%, advocating that the system can be used as a decision support system successfully and has the potential of subsequently maturing into a fully automated system., Discussion: This study is an attempt to automate the segmentation of the most occurring non-melanoma skin cancer using a transformer-based deep learning technique applied to histopathology skin images. Highly accurate segmentation and visual representation of histopathology images according to tissue types by the proposed system implies that the system can be used for skin-related routine pathology tasks including cancer and other anomaly detection, their classification, and measurement of surgical margins in the case of cancer cases., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Imran, Islam Tiwana, Mohsan, Alghamdi and Akram.)
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- 2024
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138. A concentrated machine learning-based classification system for age-related macular degeneration (AMD) diagnosis using fundus images.
- Author
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Abd El-Khalek AA, Balaha HM, Alghamdi NS, Ghazal M, Khalil AT, Abo-Elsoud MEA, and El-Baz A
- Subjects
- Humans, Aged, Fundus Oculi, Retina, Machine Learning, Wet Macular Degeneration diagnosis, Geographic Atrophy diagnostic imaging
- Abstract
The increase in eye disorders among older individuals has raised concerns, necessitating early detection through regular eye examinations. Age-related macular degeneration (AMD), a prevalent condition in individuals over 45, is a leading cause of vision impairment in the elderly. This paper presents a comprehensive computer-aided diagnosis (CAD) framework to categorize fundus images into geographic atrophy (GA), intermediate AMD, normal, and wet AMD categories. This is crucial for early detection and precise diagnosis of age-related macular degeneration (AMD), enabling timely intervention and personalized treatment strategies. We have developed a novel system that extracts both local and global appearance markers from fundus images. These markers are obtained from the entire retina and iso-regions aligned with the optical disc. Applying weighted majority voting on the best classifiers improves performance, resulting in an accuracy of 96.85%, sensitivity of 93.72%, specificity of 97.89%, precision of 93.86%, F1 of 93.72%, ROC of 95.85%, balanced accuracy of 95.81%, and weighted sum of 95.38%. This system not only achieves high accuracy but also provides a detailed assessment of the severity of each retinal region. This approach ensures that the final diagnosis aligns with the physician's understanding of AMD, aiding them in ongoing treatment and follow-up for AMD patients., (© 2024. The Author(s).)
- Published
- 2024
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139. Cardiac Fibrosis Automated Diagnosis Based on FibrosisNet Network Using CMR Ischemic Cardiomyopathy.
- Author
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Bekheet M, Sallah M, Alghamdi NS, Rusu-Both R, Elgarayhi A, and Elmogy M
- Abstract
Ischemic heart condition is one of the most prevalent causes of death that can be treated more effectively and lead to fewer fatalities if identified early. Heart muscle fibrosis affects the diastolic and systolic function of the heart and is linked to unfavorable cardiovascular outcomes. Cardiac magnetic resonance (CMR) scarring, a risk factor for ischemic heart disease, may be accurately identified by magnetic resonance imaging (MRI) to recognize fibrosis. In the past few decades, numerous methods based on MRI have been employed to identify and categorize cardiac fibrosis. Because they increase the therapeutic advantages and the likelihood that patients will survive, developing these approaches is essential and has significant medical benefits. A brand-new method that uses MRI has been suggested to help with diagnosing. Advances in deep learning (DL) networks contribute to the early and accurate diagnosis of heart muscle fibrosis. This study introduces a new deep network known as FibrosisNet, which detects and classifies fibrosis if it is present. It includes some of 17 various series layers to achieve the fibrosis detection target. The introduced classification system is trained and evaluated for the best performance results. In addition, deep transfer-learning models are applied to the different famous convolution neural networks to find fibrosis detection architectures. The FibrosisNet architecture achieves an accuracy of 96.05%, a sensitivity of 97.56%, and an F1-Score of 96.54%. The experimental results show that FibrosisNet has numerous benefits and produces higher results than current state-of-the-art methods and other advanced CNN approaches.
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- 2024
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140. An AI-based novel system for predicting respiratory support in COVID-19 patients through CT imaging analysis.
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Farahat IS, Sharafeldeen A, Ghazal M, Alghamdi NS, Mahmoud A, Connelly J, van Bogaert E, Zia H, Tahtouh T, Aladrousy W, Tolba AE, Elmougy S, and El-Baz A
- Subjects
- Humans, Tomography, X-Ray Computed, Neural Networks, Computer, Oxygen, Patients, COVID-19 diagnostic imaging
- Abstract
The proposed AI-based diagnostic system aims to predict the respiratory support required for COVID-19 patients by analyzing the correlation between COVID-19 lesions and the level of respiratory support provided to the patients. Computed tomography (CT) imaging will be used to analyze the three levels of respiratory support received by the patient: Level 0 (minimum support), Level 1 (non-invasive support such as soft oxygen), and Level 2 (invasive support such as mechanical ventilation). The system will begin by segmenting the COVID-19 lesions from the CT images and creating an appearance model for each lesion using a 2D, rotation-invariant, Markov-Gibbs random field (MGRF) model. Three MGRF-based models will be created, one for each level of respiratory support. This suggests that the system will be able to differentiate between different levels of severity in COVID-19 patients. The system will decide for each patient using a neural network-based fusion system, which combines the estimates of the Gibbs energy from the three MGRF-based models. The proposed system were assessed using 307 COVID-19-infected patients, achieving an accuracy of [Formula: see text], a sensitivity of [Formula: see text], and a specificity of [Formula: see text], indicating a high level of prediction accuracy., (© 2024. The Author(s).)
- Published
- 2024
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141. Zinc-Bromine Rechargeable Batteries: From Device Configuration, Electrochemistry, Material to Performance Evaluation.
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Alghamdi NS, Rana M, Peng X, Huang Y, Lee J, Hou J, Gentle IR, Wang L, and Luo B
- Abstract
Zinc-bromine rechargeable batteries (ZBRBs) are one of the most powerful candidates for next-generation energy storage due to their potentially lower material cost, deep discharge capability, non-flammable electrolytes, relatively long lifetime and good reversibility. However, many opportunities remain to improve the efficiency and stability of these batteries for long-life operation. Here, we discuss the device configurations, working mechanisms and performance evaluation of ZBRBs. Both non-flow (static) and flow-type cells are highlighted in detail in this review. The fundamental electrochemical aspects, including the key challenges and promising solutions, are discussed, with particular attention paid to zinc and bromine half-cells, as their performance plays a critical role in determining the electrochemical performance of the battery system. The following sections examine the key performance metrics of ZBRBs and assessment methods using various ex situ and in situ/operando techniques. The review concludes with insights into future developments and prospects for high-performance ZBRBs., (© 2023. Shanghai Jiao Tong University.)
- Published
- 2023
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142. Scale-adaptive model for detection and grading of age-related macular degeneration from color retinal fundus images.
- Author
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El-Den NN, Naglah A, Elsharkawy M, Ghazal M, Alghamdi NS, Sandhu H, Mahdi H, and El-Baz A
- Subjects
- Humans, Fluorescein Angiography, Fundus Oculi, Retina diagnostic imaging, Macula Lutea, Wet Macular Degeneration
- Abstract
Age-related Macular Degeneration (AMD), a retinal disease that affects the macula, can be caused by aging abnormalities in number of different cells and tissues in the retina, retinal pigment epithelium, and choroid, leading to vision loss. An advanced form of AMD, called exudative or wet AMD, is characterized by the ingrowth of abnormal blood vessels beneath or into the macula itself. The diagnosis is confirmed by either fundus auto-fluorescence imaging or optical coherence tomography (OCT) supplemented by fluorescein angiography or OCT angiography without dye. Fluorescein angiography, the gold standard diagnostic procedure for AMD, involves invasive injections of fluorescent dye to highlight retinal vasculature. Meanwhile, patients can be exposed to life-threatening allergic reactions and other risks. This study proposes a scale-adaptive auto-encoder-based model integrated with a deep learning model that can detect AMD early by automatically analyzing the texture patterns in color fundus imaging and correlating them to the vasculature activity in the retina. Moreover, the proposed model can automatically distinguish between AMD grades assisting in early diagnosis and thus allowing for earlier treatment of the patient's condition, slowing the disease and minimizing its severity. Our model features two main blocks, the first is an auto-encoder-based network for scale adaption, and the second is a convolutional neural network (CNN) classification network. Based on a conducted set of experiments, the proposed model achieves higher diagnostic accuracy compared to other models with accuracy, sensitivity, and specificity that reach 96.2%, 96.2%, and 99%, respectively., (© 2023. The Author(s).)
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- 2023
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143. A novel hybrid meta-heuristic contrast stretching technique for improved skin lesion segmentation.
- Author
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Malik S, Islam SMR, Akram T, Naqvi SR, Alghamdi NS, and Baryannis G
- Subjects
- Humans, Dermoscopy methods, Heuristics, Algorithms, Image Processing, Computer-Assisted methods, Melanoma diagnosis, Skin Neoplasms diagnosis, Skin Diseases diagnostic imaging
- Abstract
The high precedence of epidemiological examination of skin lesions necessitated the well-performing efficient classification and segmentation models. In the past two decades, various algorithms, especially machine/deep learning-based methods, replicated the classical visual examination to accomplish the above-mentioned tasks. These automated streams of models demand evident lesions with less background and noise affecting the region of interest. However, even after the proposal of these advanced techniques, there are gaps in achieving the efficacy of matter. Recently, many preprocessors proposed to enhance the contrast of lesions, which further aided the skin lesion segmentation and classification tasks. Metaheuristics are the methods used to support the search space optimisation problems. We propose a novel Hybrid Metaheuristic Differential Evolution-Bat Algorithm (DE-BA), which estimates parameters used in the brightness preserving contrast stretching transformation function. For extensive experimentation we tested our proposed algorithm on various publicly available databases like ISIC 2016, 2017, 2018 and PH
2 , and validated the proposed model with some state-of-the-art already existing segmentation models. The tabular and visual comparison of the results concluded that DE-BA as a preprocessor positively enhances the segmentation results., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022. Published by Elsevier Ltd.)- Published
- 2022
- Full Text
- View/download PDF
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