101. Molecular analysis of Fanconi anemia: the experience of the Bone Marrow Failure Study Group of the Italian Association of Pediatric Onco-Hematology
- Author
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Fabio Corsolini, Roberta Bottega, Federico Verzegnassi, Adriana Borriello, Elena Nicchia, Silverio Perrotta, Simona Cavani, Marta Pillon, Paola Grammatico, Johanna Svahn, Fulvio Della Ragione, Walter Barberi, Chiara Greco, Anna Locasciulli, Maria Criscuolo, Enrico Cappelli, Ugo Ramenghi, Piero Farruggia, Gabriella Casazza, Daniela Longoni, Fabio Tucci, Chiara Cugno, Daniela De Rocco, Cristina Mecucci, Anna Savoia, Helmut Hanenberg, Carlo Dufour, De Rocco, D, Bottega, R, Cappelli, E, Cavani, S, Criscuolo, M, Nicchia, E, Corsolini, F, Greco, C, Borriello, Adriana, Svahn, J, Pillon, M, Mecucci, C, Casazza, G, Verzegnassi, F, Cugno, C, Locasciulli, A, Farruggia, P, Longoni, D, Ramenghi, U, Barberi, W, Tucci, F, Perrotta, Silverio, Grammatico, P, Hanenberg, H, DELLA RAGIONE, Fulvio, Dufour, C, Savoia, A, Bone Marrow Failure Study Group of the Italian Association of Pediatric Onco, Hematology, DE ROCCO, Daniela, Bottega, Roberta, Nicchia, Elena, Borriello, A, Perrotta, S, Della Ragione, F, and Savoia, Anna
- Subjects
Candidate gene ,gene amplification ,genotype ,cytogenetics and molecular genetics ,genetic analysis ,Bioinformatics ,Western blotting ,hematopoietic stem cell ,bone marrow failure ,fanconi anemia ,Cohort Studies ,genetic heterogeneity ,single nucleotide polymorphism ,FANCG ,Fanconi anemia ,hemic and lymphatic diseases ,Genotype ,genetics ,gene mutation ,DNA extraction ,Genetics ,biology ,pathogenesis ,Fanconi anemia group A protein ,Articles ,bioinformatics ,cell line ,genetic screening ,Hematology ,cohort analysis ,Fanconi Anemia Complementation Group Proteins ,founder effect ,Italy ,nucleic acid database ,Errata Corrige ,Databases, Nucleic Acid ,amino acid substitution ,Fanconi anemia group C protein ,Fanconi anemia group D2 protein ,Fanconi anemia group G protein ,Fanconi anemia proteinarticle ,bone marrow depression ,controlled study ,gene sequence ,human ,human cell ,missense mutation ,molecular diagnosis ,molecular genetics ,protein analysis ,mosaicism ,mutation ,congenital, hereditary, and neonatal diseases and abnormalities ,Biology ,Polymorphism, Single Nucleotide ,FANCD2 ,medicine ,Humans ,Genetic heterogeneity ,Computational Biology ,nutritional and metabolic diseases ,medicine.disease ,FANCA ,FANCB - Abstract
Fanconi anemia is an inherited disease characterized by congenital malformations, pancytopenia, cancer predisposition, and sensitivity to cross-linking agents. The molecular diagnosis of Fanconi anemia is relatively complex for several aspects including genetic heterogeneity with mutations in at least 16 different genes. In this paper, we report the mutations identified in 100 unrelated probands enrolled into the National Network of the Italian Association of Pediatric Hematoly and Oncology. In approximately half of these cases, mutational screening was carried out after retroviral complementation analyses or protein analysis. In the other half, the analysis was performed on the most frequently mutated genes or using a next generation sequencing approach. We identified 108 distinct variants of the FANCA, FANCG, FANCC, FANCD2, and FANCB genes in 85, 9, 3, 2, and 1 families, respectively. Despite the relatively high number of private mutations, 45 of which are novel Fanconi anemia alleles, 26% of the FANCA alleles are due to 5 distinct mutations. Most of the mutations are large genomic deletions and nonsense or frameshift mutations, although we identified a series of missense mutations, whose pathogenetic role was not always certain. The molecular diagnosis of Fanconi anemia is still a tiered procedure that requires identifying candidate genes to avoid useless sequencing. Introduction of next generation sequencing strategies will greatly improve the diagnostic process, allowing a rapid analysis of all the genes.
- Published
- 2014