23,471 results on '"A Hegarty"'
Search Results
102. The association between nurse staffing and quality of care in emergency departments: A systematic review
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Drennan, Jonathan, Murphy, Ashling, McCarthy, Vera J.C., Ball, Jane, Duffield, Christine, Crouch, Robert, Kelly, Gearoid, Loughnane, Croia, Murphy, Aileen, Hegarty, Josephine, Brady, Noeleen, Scott, Anne, and Griffiths, Peter
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- 2024
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103. Visual working memory for connected 3D objects: effects of stimulus complexity, dimensionality and connectivity.
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He, Chuanxiuyue, Gunalp, Peri, Meyerhoff, Hauke, Rathbun, Zoe, Stieff, Mike, Franconeri, Steven, and Hegarty, Mary
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Memory ,Short-Term ,Problem Solving - Abstract
Visual working memory (VWM) is typically measured using arrays of two-dimensional isolated stimuli with simple visual identities (e.g., color or shape), and these studies typically find strong capacity limits. Science, technology, engineering and mathematics (STEM) experts are tasked with reasoning with representations of three-dimensional (3D) connected objects, raising questions about whether those stimuli would be subject to the same limits. Here, we use a color change detection task to examine working memory capacity for 3D objects made up of differently colored cubes. Experiment 1a shows that increasing the number of parts of an object leads to less sensitivity to color changes, while change-irrelevant structural dimensionality (the number of dimensions into which parts of the structure extend) does not. Experiment 1b shows that sensitivity to color changes decreases similarly with increased complexity for multipart 3D connected objects and disconnected 2D squares, while sensitivity is slightly higher with 3D objects. Experiments 2a and 2b find that when other stimulus characteristics, such as size and visual angle, are controlled, change-irrelevant dimensionality and connectivity have no effect on performance. These results suggest that detecting color changes on 3D connected objects and on displays of isolated 2D stimuli are subject to similar set size effects and are not affected by dimensionality and connectivity when these properties are change-irrelevant, ruling out one possible explanation for scientists advantages in storing and manipulating representations of complex 3D objects.
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- 2022
104. A Survey of the Hadamard Maximal Determinant Problem
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Browne, Patrick, Egan, Ronan, Hegarty, Fintan, and Cathain, Padraig O
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Mathematics - Combinatorics ,Mathematics - History and Overview ,05B20, 15B34 - Abstract
In a celebrated paper of 1893, Hadamard established the maximal determinant theorem, which establishes an upper bound on the determinant of a matrix with complex entries of norm at most $1$. His paper concludes with the suggestion that mathematicians study the maximum value of the determinant of an $n \times n$ matrix with entries in $\{ \pm 1\}$. This is the Hadamard maximal determinant problem. This survey provides complete proofs of the major results obtained thus far. We focus equally on upper bounds for the determinant (achieved largely via the study of the Gram matrices), and constructive lower bounds (achieved largely via quadratic residues in finite fields and concepts from design theory). To provide an impression of the historical development of the subject, we have attempted to modernise many of the original proofs, while maintaining the underlying ideas. Thus some of the proofs have the flavour of determinant theory, and some appear in print in English for the first time. We survey constructions of matrices in order $n \equiv 3 \mod 4$, giving asymptotic analysis which has not previously appeared in the literature. We prove that there exists an infinite family of matrices achieving at least $0.48$ of the maximal determinant bound. Previously the best known constant for a result of this type was $0.34$., Comment: 28 pages, minor modifications
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- 2021
105. Using digital storytelling with women who have experienced intimate partner abuse: a qualitative exploration of participant experiences in Australia
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Tarzia, Laura, Lamb, Katie, McKibbin, Gemma, Parker, Rhian, and Hegarty, Kelsey
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- 2023
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106. Using X, Facebook QR codes to optimise recruitment to a feasibility trial Enhancing Men’s Awareness of Testicular Diseases (E-MAT) in a cluster randomised Study Within A Trial (SWAT): Lessons learned. [version 1; peer review: awaiting peer review]
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Frances Shiely, Eoghan Cooke, Megan McCarthy, Darren Dahly, Janas Harrington, Gillian W. Shorter, Martin P. Davoren, Josephine Hegarty, Aileen Murphy, Ann Kirby, David Murphy, Steve Robertson, Michael J. Rovito, Serena Fitzgerald, Alan O'Connor, Mícheál O'Riordan, and Mohamad M Saab
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Research Article ,Articles ,Cluster randomised controlled trial ,feasibility study ,recruitment ,SWAT ,social media ,testicular neoplasms ,men’s health. - Abstract
Background Eight out of ten adults use social media, yet its efficacy in recruitment in clinical trials remains under-explored. The purpose of this SWAT was to determine which recruitment method, X, Facebook or QR code via posters, was more efficient and cost effective for recruiting participants to the host trial. Methods A cluster randomised cross-over design evaluated three recruitment strategies, X, Facebook and QR code. Seven Gaelic Athletic Association (GAA) clubs were randomised to receive either X, Facebook, or QR code. The seven clubs were re-randomised twice more, two weeks apart. There were two primary outcomes: 1. proportion of participants who consent to participate, relative to the number of players contacted; and 2. proportion of participants who consent to participate, relative to the number of players who clicked the link to register their interest. Results Fifty participants were randomised to three recruitment methods, and 47 were retained in the host trial. Participants mainly heard about the study through friends, with some engagement via social media platforms Facebook and X, and little to no engagement with the QR code. Primary outcomes were hindered by the inability to disaggregate data by GAA club. Economic outcomes revealed QR code as the costliest strategy, and while X was cheaper than Facebook in terms of the number of clicks, Facebook demonstrated better recruitment and retention and thus reduced the costs per participant. Conclusions While the inability to disaggregate data by club was a limitation, the study revealed that Facebook outperformed X and QR codes in terms of recruitment and participant retention and was thus considered to be more cost effective. The findings emphasise the importance of considering engagement patterns and cost-effectiveness in designing recruitment strategies for clinical trials, especially within the dynamic landscape of social media use.
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- 2024
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107. Optimizing water and nitrogen productivity of wheat and triticale across diverse production environments to improve the sustainability of baked products
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Tamagno, Santiago, Pittelkow, Cameron M, Fohner, George, Nelsen, Taylor S, Hegarty, Joshua M, Carter, Claudia E, Vang, Teng, and Lundy, Mark E
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Agriculture ,Land and Farm Management ,Agricultural ,Veterinary and Food Sciences ,Crop and Pasture Production ,Zero Hunger ,Responsible Consumption and Production ,sustainability ,nitrogen ,water ,agri-food chain ,baking industry ,nitrogen use efficiency ,Plant Biology ,Crop and pasture production ,Plant biology - Abstract
Wheat (Triticum aestivum L.) is a major global commodity and the primary source for baked products in agri-food supply chains. Consumers are increasingly demanding more nutritious food products with less environmental degradation, particularly related to water and fertilizer nitrogen (N) inputs. While triticale (× Triticosecale) is often referenced as having superior abiotic stress tolerance compared to wheat, few studies have compared crop productivity and resource use efficiencies under a range of N-and water-limited conditions. Because previous work has shown that blending wheat with triticale in a 40:60 ratio can yield acceptable and more nutritious baked products, we tested the hypothesis that increasing the use of triticale grain in the baking supply chain would reduce the environmental footprint for water and N fertilizer use. Using a dataset comprised of 37 site-years encompassing normal and stress-induced environments in California, we assessed yield, yield stability, and the efficiency of water and fertilizer N use for 67 and 17 commercial varieties of wheat and triticale, respectively. By identifying environments that favor one crop type over the other, we then quantified the sustainability implications of producing a mixed triticale-wheat flour at the regional scale. Results indicate that triticale outyielded wheat by 11% (p
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- 2022
108. Large-Scale vs Small-Scale Spatial Abilities: Development of a Broad Spatial Activities Questionnaire
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Munns, Mitchell Eric, Tranquada-Torres, Bailey, Chrastil, Elizabeth, and Hegarty, Mary
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Psychology ,Skill acquisition and learning ,Spatial cognition ,Survey - Abstract
There is growing evidence that spatial abilities can be improved through training, including participation in hobbies and everyday activities that involve spatial thinking. In order to better assess the contributions of everyday spatial activities to the development of spatial skills, we developed a new self-report questionnaire of spatial activities by adding updates and navigation activities to an existing questionnaire. A principal component analysis revealed five interpretable components which were compared to measures of perspective taking, mental rotation and two other self-report scales. Small but significant correlations were found between the ‘navigation’ component of the spatial activities questionnaire and a self-report measure of sense of direction, as well as self-reported childhood wayfinding experience. No sex difference was found on the ‘navigation’ component. This questionnaire is currently being used in a large study of spatial abilities.
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- 2022
109. Symmetric dimethylarginine concentrations in healthy neonatal foals and mares.
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Bozorgmanesh, Rana, Thornton, Jessica, Snyder, Jackie, Fletcher, Caitlin, Mack, Rebekah, Coyne, Michael, Murphy, Rachel, Hegarty, Evan, and Slovis, Nathan
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horse ,kidney ,neonate ,renal ,Animals ,Arginine ,Biomarkers ,Female ,Glomerular Filtration Rate ,Horses ,Parturition ,Pregnancy - Abstract
BACKGROUND: Symmetric dimethylarginine (SDMA) is a renal biomarker correlated with glomerular filtration rate (GFR). OBJECTIVES: Describe changes in SDMA in clinically healthy foals and their mares during the first month postfoaling. ANIMALS: Convenience sampling of healthy periparturient Thoroughbred mares and their full-term foals from a population of client-owned horses. METHODS: Serum and EDTA whole blood samples were collected from mares in their last month of pregnancy and then from mares and foals at approximately
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- 2021
110. Frequency drift in MR spectroscopy at 3T.
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Hui, Steve CN, Mikkelsen, Mark, Zöllner, Helge J, Ahluwalia, Vishwadeep, Alcauter, Sarael, Baltusis, Laima, Barany, Deborah A, Barlow, Laura R, Becker, Robert, Berman, Jeffrey I, Berrington, Adam, Bhattacharyya, Pallab K, Blicher, Jakob Udby, Bogner, Wolfgang, Brown, Mark S, Calhoun, Vince D, Castillo, Ryan, Cecil, Kim M, Choi, Yeo Bi, Chu, Winnie CW, Clarke, William T, Craven, Alexander R, Cuypers, Koen, Dacko, Michael, de la Fuente-Sandoval, Camilo, Desmond, Patricia, Domagalik, Aleksandra, Dumont, Julien, Duncan, Niall W, Dydak, Ulrike, Dyke, Katherine, Edmondson, David A, Ende, Gabriele, Ersland, Lars, Evans, C John, Fermin, Alan SR, Ferretti, Antonio, Fillmer, Ariane, Gong, Tao, Greenhouse, Ian, Grist, James T, Gu, Meng, Harris, Ashley D, Hat, Katarzyna, Heba, Stefanie, Heckova, Eva, Hegarty, John P, Heise, Kirstin-Friederike, Honda, Shiori, Jacobson, Aaron, Jansen, Jacobus FA, Jenkins, Christopher W, Johnston, Stephen J, Juchem, Christoph, Kangarlu, Alayar, Kerr, Adam B, Landheer, Karl, Lange, Thomas, Lee, Phil, Levendovszky, Swati Rane, Limperopoulos, Catherine, Liu, Feng, Lloyd, William, Lythgoe, David J, Machizawa, Maro G, MacMillan, Erin L, Maddock, Richard J, Manzhurtsev, Andrei V, Martinez-Gudino, María L, Miller, Jack J, Mirzakhanian, Heline, Moreno-Ortega, Marta, Mullins, Paul G, Nakajima, Shinichiro, Near, Jamie, Noeske, Ralph, Nordhøy, Wibeke, Oeltzschner, Georg, Osorio-Duran, Raul, Otaduy, Maria CG, Pasaye, Erick H, Peeters, Ronald, Peltier, Scott J, Pilatus, Ulrich, Polomac, Nenad, Porges, Eric C, Pradhan, Subechhya, Prisciandaro, James Joseph, Puts, Nicolaas A, Rae, Caroline D, Reyes-Madrigal, Francisco, Roberts, Timothy PL, Robertson, Caroline E, Rosenberg, Jens T, Rotaru, Diana-Georgiana, O'Gorman Tuura, Ruth L, Saleh, Muhammad G, Sandberg, Kristian, Sangill, Ryan, and Schembri, Keith
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3T ,Frequency drift ,Magnetic resonance spectroscopy ,Multi-site ,Multi-vendor ,Press ,Brain ,Data Analysis ,Databases ,Factual ,Humans ,Magnetic Resonance Imaging ,Magnetic Resonance Spectroscopy ,Clinical Research ,Biomedical Imaging ,Neurology & Neurosurgery ,Medical and Health Sciences ,Psychology and Cognitive Sciences - Abstract
PurposeHeating of gradient coils and passive shim components is a common cause of instability in the B0 field, especially when gradient intensive sequences are used. The aim of the study was to set a benchmark for typical drift encountered during MR spectroscopy (MRS) to assess the need for real-time field-frequency locking on MRI scanners by comparing field drift data from a large number of sites.MethodA standardized protocol was developed for 80 participating sites using 99 3T MR scanners from 3 major vendors. Phantom water signals were acquired before and after an EPI sequence. The protocol consisted of: minimal preparatory imaging; a short pre-fMRI PRESS; a ten-minute fMRI acquisition; and a long post-fMRI PRESS acquisition. Both pre- and post-fMRI PRESS were non-water suppressed. Real-time frequency stabilization/adjustment was switched off when appropriate. Sixty scanners repeated the protocol for a second dataset. In addition, a three-hour post-fMRI MRS acquisition was performed at one site to observe change of gradient temperature and drift rate. Spectral analysis was performed using MATLAB. Frequency drift in pre-fMRI PRESS data were compared with the first 5:20 minutes and the full 30:00 minutes of data after fMRI. Median (interquartile range) drifts were measured and showed in violin plot. Paired t-tests were performed to compare frequency drift pre- and post-fMRI. A simulated in vivo spectrum was generated using FID-A to visualize the effect of the observed frequency drifts. The simulated spectrum was convolved with the frequency trace for the most extreme cases. Impacts of frequency drifts on NAA and GABA were also simulated as a function of linear drift. Data from the repeated protocol were compared with the corresponding first dataset using Pearson's and intraclass correlation coefficients (ICC).ResultsOf the data collected from 99 scanners, 4 were excluded due to various reasons. Thus, data from 95 scanners were ultimately analyzed. For the first 5:20 min (64 transients), median (interquartile range) drift was 0.44 (1.29) Hz before fMRI and 0.83 (1.29) Hz after. This increased to 3.15 (4.02) Hz for the full 30 min (360 transients) run. Average drift rates were 0.29 Hz/min before fMRI and 0.43 Hz/min after. Paired t-tests indicated that drift increased after fMRI, as expected (p < 0.05). Simulated spectra convolved with the frequency drift showed that the intensity of the NAA singlet was reduced by up to 26%, 44 % and 18% for GE, Philips and Siemens scanners after fMRI, respectively. ICCs indicated good agreement between datasets acquired on separate days. The single site long acquisition showed drift rate was reduced to 0.03 Hz/min approximately three hours after fMRI.DiscussionThis study analyzed frequency drift data from 95 3T MRI scanners. Median levels of drift were relatively low (5-min average under 1 Hz), but the most extreme cases suffered from higher levels of drift. The extent of drift varied across scanners which both linear and nonlinear drifts were observed.
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- 2021
111. Assay validation and determination of the reference interval for symmetric dimethylarginine in healthy rabbits
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Strong-Townsend, Marilyn, Fabian, Niora, Skinner, Gerry, Murphy, Rachel, Hegarty, Evan, Peterson, Sarah, and Coyne, Michael
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- 2024
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112. How osteons form: A quantitative hypothesis-testing analysis of cortical pore filling and wall asymmetry
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Hegarty-Cremer, Solene G.D., Borggaard, Xenia G., Andreasen, Christina M., van der Eerden, Bram C.J., Simpson, Matthew J., Andersen, Thomas L., and Buenzli, Pascal R.
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- 2024
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113. The effect of interventions on the incidence of surgical site infections in acute care settings: A systematic review
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Horgan, Sinéad, Hegarty, Josephine, Drennan, Jonathan, Keane, Danielle, and Saab, Mohamad M.
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- 2024
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114. Fitted finite element methods for singularly perturbed elliptic problems of convection-diffusion type
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Hegarty, A.F. and O'Riordan, E.
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- 2024
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115. Massive White Dwarfs in Young Star Clusters
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Richer, Harvey B., Caiazzo, Ilaria, Du, Helen, Grondin, Steffani, Hegarty, James, Heyl, Jeremy, Kerr, Ronan, Miller, David R., and Thiele, Sarah
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
We have carried out a search for massive white dwarfs (WDs) in the direction of young open star clusters using the Gaia DR2 database. The aim of this survey was to provide robust data for new and previously known high-mass WDs regarding cluster membership, to highlight WDs previously included in the Initial Final Mass Relation (IFMR) that are unlikely members of their respective clusters according to Gaia astrometry and to select an unequivocal WD sample that could then be compared with the host clusters' turnoff masses. All promising WD candidates in each cluster CMD were followed up with spectroscopy from Gemini in order to determine whether they were indeed WDs and derive their masses, temperatures and ages. In order to be considered cluster members, white dwarfs were required to have proper motions and parallaxes within 2, 3, or 4-$\sigma$ of that of their potential parent cluster based on how contaminated the field was in their region of the sky, have a cooling age that was less than the cluster age and a mass that was broadly consistent with the IFMR. A number of WDs included in current versions of the IFMR turned out to be non-members and a number of apparent members, based on Gaia's astrometric data alone, were rejected as their mass and/or cooling times were incompatible with cluster membership. In this way, we developed a highly selected IFMR sample for high mass WDs that, surprisingly, contained no precursor masses significantly in excess of ${\sim}$6 $M_{\odot}$., Comment: 39 pages, 17 figures, Accepted for Publication in the Astrophysical Journal
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- 2021
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116. Wearable Sensors for Service Members and First Responders: Considerations for Using Commercially Available Sensors in Continuous Monitoring
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Hegarty-Craver, Meghan, primary, Davis-Wilson, Hope, additional, Gaur, Pooja, additional, Walls, Howard, additional, Dausch, David, additional, and Temple, Dorota, additional
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- 2024
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117. Self‐efficacy in the context of nursing education and transition to practice as a registered practitioner: A systematic review
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Mousa Abusubhiah, Nuala Walshe, Rena Creedon, Brendan Noonan, and Josephine Hegarty
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Nursing ,RT1-120 - Abstract
Abstract Aim The aim of this systematic review is to identify, describe and synthesize evidence from experimental studies conducted to measure and conceptualize self‐efficacy within the context of nursing education and the transition of nursing students to practice as a registered practitioners. Design Systematic review. Methods Papers were screened by four independent reviewers, and data were extracted using a standardized data extraction tool. The Preferred Reporting Items for Systematic Reviews and Meta‐Analyses (PRISMA) guidance and checklists were used to guide this review. Results The review included 47 studies, using a quasi‐experimental pre‐test–post‐test design (n = 39) and randomized control trials (n = 8). Various teaching and learning interventions were used to enhance self‐efficacy; however, there is no definitive conclusion to be drawn regarding the most effective educational interventions. Various instruments were used in the studies to measure self‐efficacy. 10 of these were related to general self‐efficacy, while 37 instruments measured self‐efficacy in the context of specific skills.
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- 2023
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118. Social and emotional wellbeing of Aboriginal and Torres Strait Islander peoples in Aboriginal controlled social housing
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Alison Brown, Tilahun Haregu, Graham Gee, Fiona Mensah, Lea Waters, Stephanie J Brown, Jan M Nicholson, Kelsey Hegarty, Darren Smith, Sue D’Amico, Rebecca Ritte, Yin Paradies, and Gregory Armstrong
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Aboriginal and Torres Strait Islander ,Social housing ,Social and emotional wellbeing ,Needs and aspirations ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Little is known about the wellbeing and aspirations of Aboriginal and Torres Strait Islander peoples living in social housing. Aboriginal and Torres Strait Islander peoples living in social housing face common social housing challenges of low income, higher incidence of mental health issues and poorer health along with specific challenges due to the impacts of colonisation and its ongoing manifestations in racism and inequity. A greater understanding of social and emotional wellbeing needs and aspirations is essential in informing the provision of appropriate support. Methods Surveys of social and emotional wellbeing (SEWB) were completed by 95 Aboriginal people aged 16 years and older living in Aboriginal Housing Victoria social housing in 2021. The survey addressed a range of domains reflecting social and emotional wellbeing, as defined by Aboriginal and Torres Strait Islander peoples. Results Most respondents demonstrated a strong sense of identity and connection to family however 26% reported having 6 or more health conditions. Ill health and disability were reported to be employment barriers for almost a third of people (32%). Improving health and wellbeing (78%) was the most cited aspiration. Experiences of racism and ill health influenced engagement with organisations and correspondingly education and employment. Conclusion Strong connections to identity, family and culture in Aboriginal peoples living in social housing coexist along with disrupted connections to mind, body and community. Culturally safe and appropriate pathways to community services and facilities can enhance these connections. Research aimed at evaluating the impact of strengths-based interventions that focus on existing strong connections will be important in understanding whether this approach is effective in improving SEWB in this population. Trial Registration : This trial was retrospectively registered with the ISRCTN Register on the 12/7/21 with the study ID:ISRCTN33665735.
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- 2023
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119. PET-measured human dopamine synthesis capacity and receptor availability predict trading rewards and time-costs during foraging
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Angela M. Ianni, Daniel P. Eisenberg, Erie D. Boorman, Sara M. Constantino, Catherine E. Hegarty, Michael D. Gregory, Joseph C. Masdeu, Philip D. Kohn, Timothy E. Behrens, and Karen F. Berman
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Science - Abstract
Abstract Foraging behavior requires weighing costs of time to decide when to leave one reward patch to search for another. Computational and animal studies suggest that striatal dopamine is key to this process; however, the specific role of dopamine in foraging behavior in humans is not well characterized. We use positron emission tomography (PET) imaging to directly measure dopamine synthesis capacity and D1 and D2/3 receptor availability in 57 healthy adults who complete a computerized foraging task. Using voxelwise data and principal component analysis to identify patterns of variation across PET measures, we show that striatal D1 and D2/3 receptor availability and a pattern of mesolimbic and anterior cingulate cortex dopamine function are important for adjusting the threshold for leaving a patch to explore, with specific sensitivity to changes in travel time. These findings suggest a key role for dopamine in trading reward benefits against temporal costs to modulate behavioral adaptions to changes in the reward environment critical for foraging.
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- 2023
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120. Cellular profiling of a recently-evolved social behavior in cichlid fishes
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Zachary V. Johnson, Brianna E. Hegarty, George W. Gruenhagen, Tucker J. Lancaster, Patrick T. McGrath, and Jeffrey T. Streelman
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Science - Abstract
Abstract Social behaviors are diverse in nature, but it is unclear how conserved genes, brain regions, and cell populations generate this diversity. Here we investigate bower-building, a recently-evolved social behavior in cichlid fishes. We use single nucleus RNA-sequencing in 38 individuals to show signatures of recent behavior in specific neuronal populations, and building-associated rebalancing of neuronal proportions in the putative homolog of the hippocampal formation. Using comparative genomics across 27 species, we trace bower-associated genome evolution to a subpopulation of glia lining the dorsal telencephalon. We show evidence that building-associated neural activity and a departure from quiescence in this glial subpopulation together regulate hippocampal-like neuronal rebalancing. Our work links behavior-associated genomic variation to specific brain cell types and their functions, and suggests a social behavior has evolved through changes in glia.
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- 2023
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121. A cognitive task analysis of final year nursing students' situation awareness in simulated deteriorating patient events: A mixed methods study
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Nuala Walshe, Jonathan Drennan, Josephine Hegarty, Sinéad O'brien, Clare Crowley, Stephanie Ryng, and Paul O'Connor
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cognitive task analysis ,education ,patient deterioration ,situation awareness ,Nursing ,RT1-120 - Abstract
Abstract Aim The aim of this study was to: (1) use cognitive task analysis to describe final year nursing students situation awareness in recognising, responding and escalating care of deteriorating patients in ward settings; and (2) make recommendations for training and practice. Design A mixed methods cognitive task analysis with a convergent triangulation design. Method Data collection involved observations of 33 final year nursing students in simulated deteriorating patient scenarios and retrospective cognitive interviews. A process tracing technique was applied to identify the cues to deterioration participants perceived; how cue perception altered as situational demands increased; the extent that participants made connections between perceived cues and reached a situational understanding; and the factors that influenced and constrained participants situation awareness. Qualitative and quantitative findings are woven together and presented using descriptive statistics, illustrative quotations and timeline extractions. Results The median cue perception was 65.4% and 57.6% in the medical and surgical scenarios, respectively. Perception was negatively influenced by incomplete vital sign monitoring as situations escalated; limited physical assessments; passive scanning behaviours; poor task automaticity; and excessive cognitive demands. Incomplete perception, poor cue integration and underdeveloped mental models influenced situational understanding. Escalation calls did not always accurately reflect situations and a reporting mindset was evident. Clinical exposure to deteriorating patients was described as variable and opportunistic. Reporting Method The study is reported in accordance with the Good Reporting of a Mixed Methods Study (GRAMMS) checklist. Patient or Public Contribution Patients and public were not involved in this research.
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- 2024
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122. Experiences of physical and emotional intimate partner violence during the COVID-19 pandemic: a comparison of prepandemic and pandemic data in a longitudinal study of Australian mothers
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Deirdre Gartland, Stephanie J Brown, Fiona K Mensah, Kelsey Hegarty, and Kelly M FitzPatrick
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Medicine - Abstract
Objective There is a lack of longitudinal population-based research comparing women’s experiences of intimate partner violence (IPV) prior to and during the COVID-19 pandemic. Using data from the Mothers’ and Young People’s Study, the prevalence of physical and emotional IPV in the first year of the pandemic is compared with earlier waves of data.Design A prospective pregnancy cohort of first-time mothers in Melbourne, Australia was followed up over the first decade of motherhood, with a quick response study conducted during the COVID-19 pandemic. 422 women completed the primary exposure measure (IPV; Composite Abuse Scale) in the 1st, 4th and 10th year postpartum and the additional pandemic survey (June 2020–April 2021).Outcome measures Depressive symptoms; anxiety symptoms; IPV disclosure to a doctor, friends or family, or someone else.Results Maternal report of emotional IPV alone was higher during the pandemic (14.4%, 95% CI 11.4% to 18.2%) than in the 10th (9.5%, 95% CI 7.0% to 12.7%), 4th (9.2%, 95% CI 6.8% to 12.4%) and 1st year after the birth of their first child (5.9%, 95% CI 4.0% to 8.6%). Conversely, physical IPV was lowest during the pandemic (3.1%, 95% CI 1.8% to 5.0%). Of women experiencing IPV during the pandemic: 29.7% were reporting IPV for the first time, 52.7% reported concurrent depressive symptoms and just 6.8% had told their doctor.Conclusions Findings suggest that the spike in IPV-related crime statistics following the onset of the pandemic (typically incidents of physical violence) is the tip of the iceberg for women’s IPV experiences. There is a need to increase the capacity of health practitioners to recognise emotional as well as physical IPV, and IPV ought to be considered where women present with mental health problems.
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- 2024
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123. Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods
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Bridget Hegarty, James Riddell V, Eric Bastien, Kathryn Langenfeld, Morgan Lindback, Jaspreet S. Saini, Anthony Wing, Jessica Zhang, and Melissa Duhaime
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bacteriophages ,viral discovery ,microbial ecology ,metagenomics ,Microbiology ,QR1-502 - Abstract
ABSTRACTUnderstanding the ecological impacts of viruses on natural and engineered ecosystems relies on the accurate identification of viral sequences from community sequencing data. To maximize viral recovery from metagenomes, researchers frequently combine viral identification tools. However, the effectiveness of this strategy is unknown. Here, we benchmarked combinations of six widely used informatics tools for viral identification and analysis (VirSorter, VirSorter2, VIBRANT, DeepVirFinder, CheckV, and Kaiju), called “rulesets.” Rulesets were tested against mock metagenomes composed of taxonomically diverse sequence types and diverse aquatic metagenomes to assess the effects of the degree of viral enrichment and habitat on tool performance. We found that six rulesets achieved equivalent accuracy [Matthews Correlation Coefficient (MCC) = 0.77, Padj ≥ 0.05]. Each contained VirSorter2, and five used our “tuning removal” rule designed to remove non-viral contamination. While DeepVirFinder, VIBRANT, and VirSorter were each found once in these high-accuracy rulesets, they were not found in combination with each other: combining tools does not lead to optimal performance. Our validation suggests that the MCC plateau at 0.77 is partly caused by inaccurate labeling within reference sequence databases. In aquatic metagenomes, our highest MCC ruleset identified more viral sequences in virus-enriched (44%–46%) than in cellular metagenomes (7%–19%). While improved algorithms may lead to more accurate viral identification tools, this should be done in tandem with careful curation of sequence databases. We recommend using the VirSorter2 ruleset and our empirically derived tuning removal rule. Our analysis provides insight into methods for in silico viral identification and will enable more robust viral identification from metagenomic data sets.IMPORTANCEThe identification of viruses from environmental metagenomes using informatics tools has offered critical insights in microbial ecology. However, it remains difficult for researchers to know which tools optimize viral recovery for their specific study. In an attempt to recover more viruses, studies are increasingly combining the outputs from multiple tools without validating this approach. After benchmarking combinations of six viral identification tools against mock metagenomes and environmental samples, we found that these tools should only be combined cautiously. Two to four tool combinations maximized viral recovery and minimized non-viral contamination compared with either the single-tool or the five- to six-tool ones. By providing a rigorous overview of the behavior of in silico viral identification strategies and a pipeline to replicate our process, our findings guide the use of existing viral identification tools and offer a blueprint for feature engineering of new tools that will lead to higher-confidence viral discovery in microbiome studies.
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- 2024
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124. GrassGroTM simulation of pasture, animal performance and greenhouse emissions on low and high sheep productivity grazing systems: 1-year validation and 25-year analysis
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M.J. McPhee, C. Edwards, S. Harden, T. Naylor, F.A. Phillips, C. Guppy, and R.S. Hegarty
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Emission intensity ,Infrared spectroscopy ,Methane ,Mitigation ,Validation ,Animal culture ,SF1-1100 - Abstract
Globally, there is a focus on reducing the absolute methane (CH4) and nitrous oxide emissions, and the emissions intensity (EI, kg CO2e/kg animal product) of livestock production. Increasing the productivity of mixed pasture systems has the potential to increase food (e.g., lamb) and textile fibre (e.g., wool) production while reducing the EI of those products from grazing livestock. The objective of this study was to quantify the differences in greenhouse gas (GHG) emissions and EI between sheep on Low (i.e., low sustainable stocking rate) and High (i.e., high sustainable stocking rate) productivity grazing systems (PGSs). Therefore, a replicated breeding-ewe trial on 18 paddocks was established across 2 - years. Three flocks on Low (3 × 16 ewes/flock) and High PGSs (3 × 32 ewes/flock) rotated across three land-classes and three paddocks per PGS. In year 1, the observed on-farm pasture quantity, quality, and botanical composition, together with lamb BW (kg), and daily CH4 production (DMP, g CH4/head per day) using Open Path Fourier Transformed Infrared (OP-FTIR) spectrometers data were measured. Subsequently, two simulations using GrassGroTM were conducted: (1) a 1-year GrassGroTM simulation that used the observed on-farm data to adjust parameters: date of mating, paddock fertility, and weight of mature ewes to validate GrassGroTM predictions to achieve accuracy and precision targets; and (2) a 25-year (1986–2011) simulation to analyse the effects of Low and High PGSs on sheep production and GHG emissions across a variable climate. The 1-year validation predictions fitted well with the observed on-farm data for: pasture biomass (kg/ha), DM digestibility (%), botanical composition (kg/ha), lamb (kg) product, and DMP (g CH4/head per day). The subsequent predicted results from the 25-year GrassGroTM simulation showed minimal effect of PGS on the mean DM intake (kg DM/day) or DMP for Low and High PGSs, but this was thought to be due to the biomass in both PGSs exceeding 1 500 kg DM/ha. The EI, over the 25-year simulation, on the High PGS was 16.5% lower than the Low PGS. Additional calculations of DMP were conducted using a recent global equation, giving estimates of DMP that closely matched the observed on-farm OP-FTIR DMP measurements, but these were lower than the GrassGroTM predictions and improved the accuracy and precision. It is concluded that in some pasture situations, managing pastures and stock numbers to intensify grazing systems can allow increased livestock production, without increasing daily CH4 emissions/head while substantially decreasing the EI of the animal products generated.
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- 2024
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125. Promoting ‘testicular awareness’: Co‐design of an inclusive campaign using the World Café Methodology
- Author
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Mohamad M. Saab, Varsha N. Shetty, Megan McCarthy, Martin P. Davoren, Angela Flynn, Ann Kirby, Steve Robertson, Gillian W. Shorter, David Murphy, Michael J. Rovito, Frances Shiely, and Josephine Hegarty
- Subjects
health promotion ,men's health ,qualitative research ,sexual and gender minorities ,testicular diseases ,World Café ,Medicine (General) ,R5-920 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Introduction Testicular cancer is the most common cancer in men aged 15–44 years in many countries. Most men with testicular cancer present with a lump. Testicular symptoms are more likely to occur secondary to benign diseases like epididymo‐orchitis, a common sexually transmitted infection. Gender and sexual minorities are at an increased risk of testicular diseases and health disparities. The aim of this study was to co‐design an inclusive community‐based campaign to promote testicular awareness. Methods This study uses the World Café methodology. Participation was sought from Lesbian, Gay, Bisexual, Transgender and Queer+ friendly organisations, testicular cancer survivors, health policy makers, media and marketing experts and graphic designers. Participants engaged in three rounds of conversations to co‐design the campaign. Data were collected using drawing sheets, artefact cards, sticky notes, coloured markers and a voice recorder. Deductive thematic analysis was conducted. Results Seventeen individuals participated in the study. Six themes emerged from the analysis as follows: (i) online communication; (ii) offline communication; (iii) behavioural targeting and education; (iv) campaign frequency and reach; (v) demographic segmentation; and (vi) campaign identity. The use of social media for campaign delivery featured strongly in all conversations. Participants also recommended offline communication using posters and radio/television advertisements to scale up the campaign and achieve wider reach. Advertisements to overcome embarrassment surrounding testicular health were particularly recommended. Participants emphasised that campaign delivery must be dynamic whilst ensuring that the health‐promoting messages are not diluted or lost. They stressed the importance of being inclusive and tailoring the campaign to different age groups, gender identities and sexual orientations. Conclusions Study recommendations will be used to design and deliver the campaign. Future research will be needed to evaluate the feasibility, acceptability, cost and effect of the campaign on promoting testicular awareness and early detection of testicular diseases. Patient or Public Contribution A participatory research approach was used to co‐design the campaign with members of Lesbian, Gay, Bisexual, Transgender and Queer+ (LGBTQ+) friendly organisations, LGBTQ+ student bodies, LGBTQ+ staff networks, LGBTQ+ sports clubs, men's health organisations, testicular cancer survivors, health policy makers, media and marketing experts and graphic designers.
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- 2024
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126. Intermediate-Mass Stars Become Magnetic White Dwarfs
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Caiazzo, Ilaria, Heyl, Jeremy, Richer, Harvey, Cummings, Jeffrey, Fleury, Leesa, Hegarty, James, Kalirai, Jason, Kerr, Ronan, Thiele, Sarah, Tremblay, Pier-Emmanuel, and Villanueva, Michael
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Astrophysics - Solar and Stellar Astrophysics - Abstract
When a star exhausts its nuclear fuel, it either explodes as a supernova or more quiescently becomes a white dwarf, an object about half the mass of our Sun with a radius of about that of the Earth. About one fifth of white dwarfs exhibit the presence of magnetic fields, whose origin has long been debated as either the product of previous stages of evolution or of binary interactions. We here report the discovery of two massive and magnetic white dwarf members of young star clusters in the Gaia DR2 database, while a third massive and magnetic cluster white dwarf was already reported in a previous paper. These stars are most likely the product of single-star evolution and therefore challenge the merger scenario as the only way to produce magnetic white dwarfs. The progenitor masses of these stars are all above 5 solar masses, and there are only two other cluster white dwarfs whose distances have been unambiguously measured with Gaia and whose progenitors' masses fall in this range. This high incidence of magnetic white dwarfs indicates that intermediate-mass progenitors are more likely to produce magnetic remnants and that a fraction of magnetic white dwarfs forms from intermediate-mass stars., Comment: 11 pages, 7 figures. Accepted by ApJ Letters
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- 2020
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127. Understanding the human in the design of cyber-human discovery systems for data-driven astronomy
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Fluke, Christopher J., Hegarty, Sarah E., and MacMahon, Clare O. -M.
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
High-quality, usable, and effective software is essential for supporting astronomers in the discovery-focused tasks of data analysis and visualisation. As the volume, and perhaps more crucially, the velocity of astronomical data grows, the role of the astronomer is changing. There is now an increased reliance on automated and autonomous discovery and decision-making workflows rather than visual inspection. We assert the need for an improved understanding of how astronomers (humans) currently make visual discoveries from data. This insight is a critical element for the future design, development and effective use of cyber-human discovery systems, where astronomers work in close collaboration with automated systems to gain understanding from continuous, real-time data streams. We discuss how relevant human performance data could be gathered, specifically targeting the domains of expertise and skill at visual discovery, and the identification and management of cognitive factors. By looking to other disciplines where human performance is assessed and measured, we propose four early-stage applications that would: (1) allow astronomers to evaluate, and potentially improve, their own visual discovery skills; (2) support just-in-time coaching; (3) enable talent identification; and (4) result in user interfaces that automatically respond to skill level and cognitive state. Throughout, we advocate for the importance of user studies and the incorporation of participatory design and co-design practices into the planning, implementation and evaluation of alternative user interfaces and visual discovery environments., Comment: 16 pages, 2 figures, accepted for publication in Astronomy & Computing
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- 2020
128. A numerical algorithm to computationally solve the Hemker problem using Shishkin meshes
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Hegarty, Alan F. and O'Riordan, Eugene
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Mathematics - Numerical Analysis ,65N12, 65N15, 65N06 - Abstract
A numerical algorithm is presented to solve a benchmark problem proposed by Hemker. The algorithm incorporates asymptotic information into the design of appropriate piecewise-uniform Shishkin meshes. Moreover, different co-ordinate systems are utilized due to the different geometries and associated layer structures that are involved in this problem. Numerical results are presented to demonstrate the effectiveness of the proposed numerical algorithm., Comment: 25 pages with 8 figures
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- 2020
129. Workshop on Quantification, Communication, and Interpretation of Uncertainty in Simulation and Data Science
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Whitaker, Ross, Thompson, William, Berger, James, Fischhof, Baruch, Goodchild, Michael, Hegarty, Mary, Jermaine, Christopher, McKinley, Kathryn S., Pang, Alex, and Wendelberger, Joanne
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Computer Science - Computers and Society - Abstract
Modern science, technology, and politics are all permeated by data that comes from people, measurements, or computational processes. While this data is often incomplete, corrupt, or lacking in sufficient accuracy and precision, explicit consideration of uncertainty is rarely part of the computational and decision making pipeline. The CCC Workshop on Quantification, Communication, and Interpretation of Uncertainty in Simulation and Data Science explored this problem, identifying significant shortcomings in the ways we currently process, present, and interpret uncertain data. Specific recommendations on a research agenda for the future were made in four areas: uncertainty quantification in large-scale computational simulations, uncertainty quantification in data science, software support for uncertainty computation, and better integration of uncertainty quantification and communication to stakeholders., Comment: A Computing Community Consortium (CCC) workshop report, 28 pages
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- 2020
130. OrganoidChip facilitates hydrogel-free immobilization for fast and blur-free imaging of organoids
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Moshksayan, Khashayar, Harihara, Anirudha, Mondal, Sudip, Hegarty, Evan, Atherly, Todd, Sahoo, Dipak K., Jergens, Albert E., Mochel, Jonathan P., Allenspach, Karin, Zoldan, Janet, and Ben-Yakar, Adela
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- 2023
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131. Cultural determinants of the gap between self-estimated navigation ability and wayfinding performance: evidence from 46 countries
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Walkowiak, S., Coutrot, A., Hegarty, M., Velasco, P. F., Wiener, J. M., Dalton, R. C., Hölscher, C., Hornberger, M., Spiers, H. J., and Manley, E.
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- 2023
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132. ‘Family court…sucks out your soul’: Australian general practitioners’ experiences supporting domestic violence survivors through family court
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Kuruppu, Jacqueline, Novy, Kitty, Fetter, Lily, Oo, Sanda, and Hegarty, Kelsey
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- 2023
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133. Timing and cell specificity of senescence drives postnatal lung development and injury
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Yao, Hongwei, Wallace, Joselynn, Peterson, Abigail L., Scaffa, Alejandro, Rizal, Salu, Hegarty, Katy, Maeda, Hajime, Chang, Jason L., Oulhen, Nathalie, Kreiling, Jill A., Huntington, Kelsey E., De Paepe, Monique E., Barbosa, Guilherme, and Dennery, Phyllis A.
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- 2023
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134. MODeL: Memory Optimizations for Deep Learning.
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Benoit Steiner, Mostafa Elhoushi, Jacob Kahn, and James Hegarty
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- 2023
135. The Predicament of the Sant-Sipahi (Saint-Soldier): Sanctioned Violence and Martyrdom in the Sikh Tradition
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Hegarty, James M., Power, Maria, editor, and Paynter, Helen, editor
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- 2023
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136. GenoNurse – Project – an International Partnership to Enhance Genetic and Genomic Competence in European Nursing Students
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Halkoaho, Arja, Smolander, Nina, Laaksonen, Mari, Huhtinen, Essi, Hegarty, Josephine, Caples, Maria, Kapun, Marija Milavec, Kamensek, Tina, Dante, Angelo, Masotta, Vittorio, Petrucci, Cristina, Lancia, Loreto, Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Kubincová, Zuzana, editor, Melonio, Alessandra, editor, Durães, Dalila, editor, Rua Carneiro, Davide, editor, Rizvi, Mehdi, editor, and Lancia, Loreto, editor
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- 2023
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137. Genomic Literacy in the Nursing Field: A Scoping Review Protocol
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Dante, Angelo, Petrucci, Cristina, Halkoaho, Arja, Smolander, Nina, Laaksonen, Mari, Huhtinen, Essi, Hegarty, Josephine, Caples, Maria, Kapun, Marija Milavec, Kamensek, Tina, Masotta, Vittorio, Lancia, Loreto, Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Kubincová, Zuzana, editor, Melonio, Alessandra, editor, Durães, Dalila, editor, Rua Carneiro, Davide, editor, Rizvi, Mehdi, editor, and Lancia, Loreto, editor
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- 2023
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138. Large-scale evaluation of outcomes after a genetic diagnosis in children with severe developmental disorders
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Copeland, Harriet, Low, Karen J., Wynn, Sarah L., Ahmed, Ayesha, Arthur, Victoria, Balasubramanian, Meena, Bennett, Katya, Berg, Jonathan, Bertoli, Marta, Bryson, Lisa, Bucknall, Catrin, Campbell, Jamie, Chandler, Kate, Chauhan, Jaynee, Clarkson, Amy, Coles, Rachel, Conti, Hector, Costello, Philandra, Coupar, Tessa, Craig, Amy, Dean, John, Dillon, Amy, Dixit, Abhijit, Drew, Kathryn, Eason, Jacqueline, Forzano, Francesca, Foulds, Nicola, Gardham, Alice, Ghali, Neeti, Green, Andrew, Hanna, William, Harrison, Rachel, Hegarty, Mairead, Higgs, Jenny, Holder, Muriel, Irving, Rachel, Jain, Vani, Johnson, Katie, Jolley, Rachel, Jones, Wendy D., Jones, Gabriela, Joss, Shelagh, Kalinauskiene, Ruta, Kanani, Farah, Kavanagh, Karl, Khan, Mahmudur, Khan, Naz, Kivuva, Emma, Lahiri, Nayana, Lakhani, Neeta, Lampe, Anne, Lynch, Sally Ann, Mansour, Sahar, Marsden, Alice, Massey, Hannah, McKee, Shane, Mohammed, Shehla, Naik, Swati, Nesarajah, Mithushanaa, Newbury-Ecob, Ruth, Osborne, Fiona, Parker, Michael J., Patterson, Jenny, Pottinger, Caroline, Prapa, Matina, Prescott, Katrina, Quinn, Shauna, Radley, Jessica A., Robart, Sarah, Ross, Alison, Rosti, Giulia, Sansbury, Francis H., Sarkar, Ajoy, Searle, Claire, Shannon, Nora, Shears, Debbie, Smithson, Sarah, Stewart, Helen, Suri, Mohnish, Tadros, Shereen, Theobald, Rachel, Thomas, Rhian, Tsoulaki, Olga, Vasudevan, Pradeep, Rodriguez, Maribel Verdesoto, Vittery, Emma, Whyte, Sinead, Woods, Emily, Wright, Thomas, Zocche, David, Firth, Helen V., and Wright, Caroline F.
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- 2024
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139. A Twin Study of Altered White Matter Heritability in Youth With Autism Spectrum Disorder
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Hegarty, John P., II, Monterrey, Julio C., Tian, Qiyuan, Cleveland, Sue C., Gong, Xinyi, Phillips, Jennifer M., Wolke, Olga N., McNab, Jennifer A., Hallmayer, Joachim F., Reiss, Allan L., Hardan, Antonio Y., and Lazzeroni, Laura C.
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- 2024
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140. Great staff and 'tempting' displays at Waitrose store
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Hegarty, Ronan
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Waitrose Ltd. -- Management -- Achievements and awards ,Supermarkets -- Management -- Achievements and awards ,Company business management ,Business ,Food and beverage industries ,Business, international - Abstract
Byline: Ronan Hegarty Waitrose had reason for a double celebration this week. Not only did it retain its crown as the best retailer for customer service at the Grocer Gold [...]
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- 2024
141. Availability on the up apart from Asda
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Hegarty, Ronan
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Asda Stores Ltd. -- Management -- Evaluation ,Supermarkets -- Management -- Evaluation ,Company business management ,Business ,Food and beverage industries ,Business, international - Abstract
Byline: Ronan Hegarty As the cost of living crisis recedes, supermarkets have done a better job in the past year at getting products on shelves, according to the latest annual [...]
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- 2024
142. Busy Morrisons St Andrews impresses under pressure
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Hegarty, Ronan
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Wm Morrison Supermarkets PLC -- Market share -- Company sales and earnings ,Supermarkets -- Market share -- Company sales and earnings ,Company market share ,Company earnings/profit ,Business ,Food and beverage industries ,Business, international - Abstract
Byline: Ronan Hegarty Morrisons picked up our latest store of the week crown thanks to a strong performance from a very busy store in St Andrews. The store scored 79 [...]
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- 2024
143. Tesco Solihull offers rare full basket on busy Sunday
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Hegarty, Ronan
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Tesco PLC -- Service enhancement -- Company sales and earnings ,Supermarkets -- Service enhancement -- Company sales and earnings ,Company earnings/profit ,Business ,Food and beverage industries ,Business, international - Abstract
Byline: Ronan Hegarty Tesco this week continued its run as the form retailer in terms of customer service and availability. Thanks to its Extra superstore in Solihull, the UK's biggest [...]
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- 2024
144. Defining Breast Cancer Awareness and Identifying Barriers to Breast Cancer Awareness for Women with an Intellectual Disability: A Review of the Literature
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Walsh, Susan, O'Mahony, Mairin, Hegarty, Josephine, Farrell, Dawn, Taggart, Laurence, Kelly, Louise, Sahm, Laura, Corrigan, Maria, Caples, Maria, Martin, Anne-Marie, Tabirca, Sabin, Corrigan, Mark A., and Lehane, Elaine
- Abstract
Introduction: Incidence rates for developing breast cancer are similar for women regardless of intellectual ability. However, women with an intellectual disability present with advanced breast cancers, which often have a poor prognosis. Method: A structured narrative review of the literature was performed to explore the concepts of breast awareness and breast cancer awareness and subsequently, identify barriers to breast cancer awareness encountered by women with an intellectual disability. Results: A total of 22 studies involving people with varying levels of intellectual disability informed this review. The barriers to breast cancer awareness encountered by women with an intellectual disability include: lack of their understanding, the role of the carer and literacy issues. Conclusion: Identifying the barriers to breast cancer awareness for women with an intellectual disability will help to facilitate breast cancer awareness which has the potential to result in better long-term outcomes through an early diagnosis of breast cancer.
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- 2022
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145. Stripe rust resistance gene Yr34 (synonym Yr48) is located within a distal translocation of Triticum monococcum chromosome 5AmL into common wheat
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Chen, Shisheng, Hegarty, Joshua, Shen, Tao, Hua, Lei, Li, Hongna, Luo, Jing, Li, Hongyu, Bai, Shengsheng, Zhang, Chaozhong, and Dubcovsky, Jorge
- Subjects
Agricultural ,Veterinary and Food Sciences ,Plant Biology ,Biological Sciences ,Genetics ,Basidiomycota ,Chromosome Mapping ,Disease Resistance ,Genes ,Plant ,Genetic Markers ,Genotype ,Plant Breeding ,Plant Diseases ,Polymorphism ,Single Nucleotide ,Polyploidy ,Recombination ,Genetic ,Triticum ,Agricultural and Veterinary Sciences ,Technology ,Plant Biology & Botany ,Crop and pasture production ,Plant biology - Abstract
Key message The stripe rust resistance gene Yr34 was transferred to polyploid wheat chromosome 5AL from T. monococcum and has been used for over two centuries.Wheat stripe (or yellow) rust, caused by Puccinia striiformis f. sp. tritici (Pst), is currently among the most damaging fungal diseases of wheat worldwide. In this study, we report that the stripe rust resistance gene Yr34 (synonym Yr48) is located within a distal segment of the cultivated Triticum monococcum subsp. monococcum chromosome 5AmL translocated to chromosome 5AL in polyploid wheat. The diploid wheat species Triticum monococcum (genome AmAm) is closely related to T. urartu (donor of the A genome to polyploid wheat) and has good levels of resistance against the stripe rust pathogen. When present in hexaploid wheat, the T. monococcum Yr34 resistance gene confers a moderate level of resistance against virulent Pst races present in California and the virulent Chinese race CYR34. In a survey of 1,442 common wheat genotypes, we identified 5AmL translocations of fourteen different lengths in 17.5% of the accessions, with higher frequencies in Europe than in other continents. The old European wheat variety "Mediterranean" was identified as a putative source of this translocation, suggesting that Yr34 has been used for over 200 years. Finally, we designed diagnostic CAPS and sequenced-based markers that will be useful to accelerate the deployment of Yr34 in wheat breeding programs to improve resistance to this devastating pathogen.
- Published
- 2021
146. Heritability of Functional Connectivity in Resting State: Assessment of the Dynamic Mean, Dynamic Variance, and Static Connectivity across Networks
- Author
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Barber, Anita D, Hegarty, Catherine E, Lindquist, Martin, and Karlsgodt, Katherine H
- Subjects
Genetics ,Clinical Research ,Neurosciences ,Neurological ,Brain ,Connectome ,Databases ,Genetic ,Female ,Humans ,Magnetic Resonance Imaging ,Male ,Nerve Net ,Rest ,ACE ,dynamic connectivity ,heritability ,resting state networks ,static connectivity ,Psychology ,Cognitive Sciences ,Experimental Psychology - Abstract
Recent efforts to evaluate the heritability of the brain's functional connectome have predominantly focused on static connectivity. However, evaluating connectivity changes across time can provide valuable insight about the inherent dynamic nature of brain function. Here, the heritability of Human Connectome Project resting-state fMRI data was examined to determine whether there is a genetic basis for dynamic fluctuations in functional connectivity. The dynamic connectivity variance, in addition to the dynamic mean and standard static connectivity, was evaluated. Heritability was estimated using Accelerated Permutation Inference for the ACE (APACE), which models the additive genetic (h2), common environmental (c2), and unique environmental (e2) variance. Heritability was moderate (mean h2: dynamic mean = 0.35, dynamic variance = 0.45, and static = 0.37) and tended to be greater for dynamic variance compared to either dynamic mean or static connectivity. Further, heritability of dynamic variance was reliable across both sessions for several network connections, particularly between higher-order cognitive and visual networks. For both dynamic mean and static connectivity, similar patterns of heritability were found across networks. The findings support the notion that dynamic connectivity is genetically influenced. The flexibility of network connections, not just their strength, is a heritable endophenotype that may predispose trait behavior.
- Published
- 2021
147. Age-Related Changes in Spatial Navigation Are Evident by Midlife and Differ by Sex
- Author
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Yu, Shuying, Boone, Alexander P, He, Chuanxiuyue, Davis, Rie C, Hegarty, Mary, Chrastil, Elizabeth R, and Jacobs, Emily G
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Biological Psychology ,Psychology ,Aging ,1.2 Psychological and socioeconomic processes ,Underpinning research ,Adolescent ,Adult ,Aged ,Female ,Humans ,Male ,Middle Aged ,Spatial Navigation ,Young Adult ,cognitive aging ,virtual reality ,path integration ,wayfinding ,Cognitive Sciences ,Experimental Psychology - Abstract
Accumulating evidence suggests that distinct aspects of successful navigation-path integration, spatial-knowledge acquisition, and navigation strategies-change with advanced age. Yet few studies have established whether navigation deficits emerge early in the aging process (prior to age 65) or whether early age-related deficits vary by sex. Here, we probed healthy young adults (ages 18-28) and midlife adults (ages 43-61) on three essential aspects of navigation. We found, first, that path-integration ability shows negligible effects of sex or age. Second, robust sex differences in spatial-knowledge acquisition are observed not only in young adulthood but also, although with diminished effect, at midlife. Third, by midlife, men and women show decreased ability to acquire spatial knowledge and increased reliance on taking habitual paths. Together, our findings indicate that age-related changes in navigation ability and strategy are evident as early as midlife and that path-integration ability is spared, to some extent, in the transition from youth to middle age.
- Published
- 2021
148. Prognostic Value of BAP1 Protein Expression in Uveal Melanoma
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Kennedy, Susan, Owens, Sally, Ivers, Laura, Hegarty, Ciara, O’Neill, Valerie, Berenguer-Pina, Jose J., Horgan, Noel, Crown, John, and Walsh, Naomi
- Published
- 2024
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149. Dynamic epi‐transcriptomic landscape mapping with disease progression in estrogen receptor‐positive breast cancer
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Stephen Keelan, Mihaela Ola, Sara Charmsaz, Sinéad Cocchiglia, Daniela Ottaviani, Seán Hickey, Siobhan Purcell, Fiona Bane, Aisling Hegarty, Ben Doherty, Katherine Sheehan, Lance Hudson, Nicola Cosgrove, Benjamin Roux, Muriel Laine, Geoffrey Greene, Damir Varešlija, Arnold Konrad Hill, and Leonie Young
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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150. Bilateral orchidopexy for intermittent testicular torsion.
- Author
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Hegarty, Paul K., Kalantar, Mona, Hegarty, Penelope A., Zafirakis, Helen, and Monahan, Jack E.
- Published
- 2024
- Full Text
- View/download PDF
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