3,264 results on '"van Vliet, P."'
Search Results
52. Worldwide absence of canonical benzimidazole resistance-associated mutations within β-tubulin genes from Ascaris
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Jones, Ben P., Kozel, Kezia, Alonte, Allen Jethro I., Llanes, Kennesa Klariz R., Juhász, Alexandra, Chaudhry, Umer, Roose, Sara, Geldhof, Peter, Belizario, Jr., Vicente Y., Nejsum, Peter, Stothard, J. Russell, LaCourse, E. James, van Vliet, Arnoud H. M., Paller, Vachel Gay V., and Betson, Martha
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- 2024
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53. Procedural sedation by advanced practice providers in the emergency medical service in the Netherlands: a retrospective study
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van Vliet, Risco, Breedveld, Lennert, Heutinck, Annemieke A.J., Ockeloen, Bram H.A., van ’ Hof, Arnoud W.J., and Moors, Xavier R.J.
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- 2024
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54. Pancreatic cancer-associated fibroblasts modulate macrophage differentiation via sialic acid-Siglec interactions
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Boelaars, Kelly, Rodriguez, Ernesto, Huinen, Zowi R., Liu, Chang, Wang, Di, Springer, Babet O., Olesek, Katarzyna, Goossens-Kruijssen, Laura, van Ee, Thomas, Lindijer, Dimitri, Tak, Willemijn, de Haas, Aram, Wehry, Laetitia, Nugteren-Boogaard, Joline P., Mikula, Aleksandra, de Winde, Charlotte M., Mebius, Reina E., Tuveson, David A., Giovannetti, Elisa, Bijlsma, Maarten F., Wuhrer, Manfred, van Vliet, Sandra J., and van Kooyk, Yvette
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- 2024
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55. A triple increase in global river basins with water scarcity due to future pollution
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Wang, Mengru, Bodirsky, Benjamin Leon, Rijneveld, Rhodé, Beier, Felicitas, Bak, Mirjam P., Batool, Masooma, Droppers, Bram, Popp, Alexander, van Vliet, Michelle T. H., and Strokal, Maryna
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- 2024
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56. NPO bij expertise-onderzoek
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van Vliet, Fabienne and Piebenga, Willem Pieter
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- 2024
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57. Air pollution and bronchiolitis: a case–control study in Antwerp, Belgium
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Van Brusselen, Daan, De Troeyer, Katrien, van Vliet, Marinus Pieter, Avonts, Dirk, Nemery, Benoit, Liesenborghs, Laurens, Verhulst, Stijn, Van Herck, Koen, and De Bacquer, Dirk
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- 2024
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58. Towards Full Thickness Small Intestinal Models: Incorporation of Stromal Cells
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Asal, Melis, Rep, Mila, Bontkes, Hetty J., van Vliet, Sandra J., Mebius, Reina E., and Gibbs, Susan
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- 2024
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59. Applying earth system justice to phase out fossil fuels: learning from the injustice of adopting 1.5 °C over 1 °C
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Gupta, Joyeeta, Chen, Yang, Mckay, David I. Armstrong, Fezzigna, Paola, Gentile, Giuliana, Karg, Aljoscha, van Vliet, Luc, Lade, Steven J., and Jacobson, Lisa
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- 2024
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60. Should Commercial Diagnostic Testing Be Stimulated or Discouraged? Analyzing Willingness-to-Pay and Market Externalities of Three Commercial Diagnostic Tests in The Netherlands
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Stadhouders, Niek, van Vliet, Ella, Brabers, Anne E.M., van Dijk, Wieteke, and Onstwedder, Suzanne
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- 2024
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61. Line defect correlators in fermionic CFTs
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Barrat, Julien, Liendo, Pedro, and van Vliet, Philine
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High Energy Physics - Theory ,Condensed Matter - Strongly Correlated Electrons - Abstract
Scalar-fermion models, such as the Gross-Neveu-Yukawa model, admit natural $1d$ defects given by the exponential of a scalar field integrated along a straight line. In $4-\varepsilon$ dimensions the defect coupling is weakly relevant and the setup defines a non-trivial interacting defect CFT. In this work we study correlation functions on these defect CFTs to order $\varepsilon$. We focus on $1d$ correlators constrained to the line, which include canonical operators like the displacement and the one-dimensional analog of the spin field. These results give access to perturbative CFT data that can be used as input in the numerical bootstrap. We also consider local operators outside the line, in particular two-point functions of scalars whose dynamics are non-trivial due to the presence of the defect., Comment: 44 pages, ancillary Mathematica notebook
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- 2023
62. Constraints on the proton fraction of cosmic rays at the highest energies and the consequences for cosmogenic neutrinos and photons
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Ehlert, Domenik, van Vliet, Arjen, Oikonomou, Foteini, and Winter, Walter
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
Over the last decade, observations have shown that the mean mass of ultra-high-energy cosmic rays (UHECRs) increases progressively toward the highest energies. However, the precise composition is still unknown, and several theoretical studies hint at the existence of a subdominant proton component up to the highest energies. Motivated by the exciting prospect of performing charged-particle astronomy with ultra-high-energy (UHE) protons we quantify the level of UHE-proton flux that is compatible with present multimessenger observations and the associated fluxes of neutral messengers produced in the interactions of the protons. We study this scenario with numerical simulations of two independent populations of extragalactic sources and perform a fit to the combined UHECR energy spectrum and composition observables, constrained by diffuse gamma-ray and neutrino observations. We find that up to of order $10\%$ of the cosmic rays at the highest energies can be UHE protons, although the result depends critically on the selected hadronic interaction model for the air showers. Depending on the maximum proton energy ($E_\text{max}^\text{p}$) and the redshift evolution of sources, the associated flux of cosmogenic neutrinos and UHE gamma rays can significantly exceed the multimessenger signal of the mixed-mass cosmic rays. Moreover, if $E_\text{max}^\text{p}$ is above the GZK limit, we predict a large flux of UHE neutrinos above EeV energies that is absent in alternate scenarios for the origin of UHECRs. We present the implications and opportunities afforded by these UHE proton, neutrino and photon fluxes for future multimessenger observations., Comment: version published in JCAP
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- 2023
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63. Pasture-finishing of cattle in Western U.S. rangelands improves markers of animal metabolic health and nutritional compounds in beef
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Nikia Evans, Jennifer Cloward, Robert E. Ward, Herman A. van Wietmarschen, Nick van Eekeren, Scott L. Kronberg, Frederick D. Provenza, and Stephan van Vliet
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Pasture-finished ,Grass-fed ,Beef ,Meat ,Omega-3 fats ,Phytochemical ,Medicine ,Science - Abstract
Abstract As environmental and health concerns of beef production and consumption mount, there is growing interest in agroecological production methods, including finishing beef cattle on pastures with phytochemically diverse grasses, forbs, and/or shrubs. The goal of this metabolomics, lipidomics, and fatty acid methyl ester profiling study was to compare meat (pectoralis profundus) of Black Angus cattle from two commercial US beef finishing systems (pasture-finished on Western U.S. rangeland; n = 18 and grain-finished in a Midwest U.S. feedlot; n = 18). A total of 907 out of 1575 compounds differed in abundance between pasture-finished and grain-finished beef samples (all, false discovery rate adjusted P
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- 2024
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64. All-visible-light-driven salicylidene schiff-base-functionalized artificial molecular motors
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Sven van Vliet, Jinyu Sheng, Charlotte N. Stindt, and Ben L. Feringa
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Science - Abstract
Abstract Light-driven rotary molecular motors are among the most promising classes of responsive molecular machines and take advantage of their intrinsic chirality which governs unidirectional rotation. As a consequence of their dynamic function, they receive considerable interest in the areas of supramolecular chemistry, asymmetric catalysis and responsive materials. Among the emerging classes of responsive photochromic molecules, multistate first-generation molecular motors driven by benign visible light remain unexplored, which limits the exploitation of the full potential of these mechanical light-powered systems. Herein, we describe a series of all-visible-light-driven first-generation molecular motors based on the salicylidene Schiff base functionality. Remarkable redshifts up to 100 nm in absorption are achieved compared to conventional first-generation motor structures. Taking advantage of all-visible-light-driven multistate motor scaffolds, adaptive behaviour is found as well, and potential application in multistate photoluminescence is demonstrated. These functional visible-light-responsive motors will likely stimulate the design and synthesis of more sophisticated nanomachinery with a myriad of future applications in powering dynamic systems.
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- 2024
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65. Interprofessional contact with conventional healthcare providers in oncology: a survey among complementary medicine practitioners
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Marit Mentink, Julia Jansen, Janneke Noordman, Liesbeth van Vliet, Martine Busch, and Sandra van Dulmen
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Complementary medicine ,Interprofessional contact ,Complementary medicine practitioner ,Healthcare provider ,Healthcare communication ,Oncology ,Other systems of medicine ,RZ201-999 - Abstract
Abstract Background Half of all patients with cancer use complementary medicine. Given the benefits and risks associated with complementary medicine use, contact between complementary medicine practitioners and conventional healthcare providers (oncologists, nurses) is important for monitoring the health and well-being of mutual patients with cancer. Research on occurrence of such interprofessional contact is scarce. This study aims to describe complementary medicine practitioners’ experiences with contact with conventional healthcare providers about mutual patients with cancer and the importance they attach to patient disclosure of complementary medicine use to their conventional healthcare provider. Predictors for interprofessional contact are explored. Methods An online survey was administered among complementary medicine practitioners who treat patients with cancer or cancer survivors and who are member of a professional association in the Netherlands. Results The survey was completed by 1481 complementary medicine practitioners. 40% of the participants reported to have contact with conventional healthcare providers of patients with cancer. Only 13% of the complementary medicine practitioners experienced conventional healthcare providers as open to communication with them. An explorative logistic regression showed that openness of conventional healthcare providers as experienced by complementary medicine practitioners was the most important predictor for the occurrence of interprofessional contact (OR = 8.12, 95% CI 5.12–12.86, p
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- 2024
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66. Optimizing placebo and minimizing nocebo effects through communication: e-learning and virtual reality training development
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Janine Westendorp, Liesbeth M. van Vliet, Stefanie H. Meeuwis, Tim C. olde Hartman, Ariëtte R. J. Sanders, Eric Jutten, Monique Dirven, Kaya J. Peerdeman, and Andrea W. M. Evers
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Placebo effect ,Nocebo effect ,Communication training ,Virtual reality ,e-learning ,Special aspects of education ,LC8-6691 ,Medicine - Abstract
Abstract Background The effects of many treatments in healthcare are determined by factors other than the treatment itself. Patients’ expectations and the relationship with their healthcare provider can significantly affect treatment outcomes and thereby play a major role in eliciting placebo and nocebo effects. We aim to develop and evaluate an innovative communication training, consisting of an e-learning and virtual reality (VR) training, for healthcare providers across all disciplines, to optimize placebo and minimize nocebo effects through healthcare provider-patient communication. The current paper describes the development, mid-term evaluation, optimization, and final evaluation of the communication training, conducted in The Netherlands. Methods The development of both the e-learning and the VR training consisted of four phases: 1) content and technical development, 2) mid-term evaluation by healthcare providers and placebo/communication researchers, 3) optimization of the training, and 4) final evaluation by healthcare providers. To ensure the success, applicability, authenticity, and user-friendliness of the communication training, there was ongoing structural collaboration with healthcare providers as future end users, experts in the field of placebo/communication research, and educational experts in all phases. Results Placebo/communication researchers and healthcare providers evaluated the e-learning positively (overall 7.9 on 0–10 scale) and the content was perceived as useful, accessible, and interesting. The VR training was assessed with an overall 6.9 (0–10 scale) and was evaluated as user-friendly and a safe method for practicing communication skills. Although there were some concerns regarding the authenticity of the VR training (i.e. to what extent the virtual patient reacts like a real patient), placebo and communication researchers, as well as healthcare providers, recognized the significant potential of the VR training for the future. Conclusions We have developed an innovative and user-friendly communication training, consisting of an e-learning and VR training (2D and 3D), that can be used to teach healthcare providers how to optimize placebo effects and minimize nocebo effects through healthcare provider-patient communication. Future studies can work on improved authenticity, translate the training into other languages and cultures, expand with additional VR cases, and measure the expected effects on providers communication skills and subsequently patient outcomes.
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- 2024
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67. Water quality management could halve future water scarcity cost-effectively in the Pearl River Basin
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Safa Baccour, Gerwin Goelema, Taher Kahil, Jose Albiac, Michelle T. H. van Vliet, Xueqin Zhu, and Maryna Strokal
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Science - Abstract
Abstract Reducing water scarcity requires both mitigation of the increasing water pollution and adaptation to the changing availability and demand of water resources under global change. However, state-of-the-art water scarcity modeling efforts often ignore water quality and associated biogeochemical processes in the design of water scarcity reduction measures. Here, we identify cost-effective options for reducing future water scarcity by accounting for water quantity and quality in the highly water stressed and polluted Pearl River Basin in China under various socio-economic and climatic change scenarios based on the Shared Socio-economic Pathways (SSPs) and Representative Concentration Pathways (RCPs). Our modeling approach integrates a nutrient model (MARINA-Nutrients) with a cost-optimization procedure, considering biogeochemistry and human activities on land in a spatially explicit way. Results indicate that future water scarcity is expected to increase by a factor of four in most parts of the Pearl River Basin by 2050 under the RCP8.5-SSP5 scenario. Results also show that water quality management options could half future water scarcity in a cost-effective way. Our analysis could serve as an example of water scarcity assessment for other highly water stressed and polluted river basins around the world and inform the design of cost-effective measures to reduce water scarcity.
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- 2024
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68. Manufacturing mesenchymal stromal cells in a microcarrier-microbioreactor platform can enhance cell yield and quality attributes: case study for acute respiratory distress syndrome
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Brandon Krupczak, Camille Farruggio, and Krystyn J. Van Vliet
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Medicine - Abstract
Abstract Mesenchymal stem and stromal cells (MSCs) hold potential to treat a broad range of clinical indications, but clinical translation has been limited to date due in part to challenges with batch-to-batch reproducibility of potential critical quality attributes (pCQAs) that can predict potency/efficacy. Here, we designed and implemented a microcarrier-microbioreactor approach to cell therapy manufacturing, specific to anchorage-dependent cells such as MSCs. We sought to assess whether increased control of the biochemical and biophysical environment had the potential to create product with consistent presentation and elevated expression of pCQAs relative to established manufacturing approaches in tissue culture polystyrene (TCPS) flasks. First, we evaluated total cell yield harvested from dissolvable, gelatin microcarriers within a microbioreactor cassette (Mobius Breez) or a flask control with matched initial cell seeding density and culture duration. Next, we identified 24 genes implicated in a therapeutic role for a specific motivating indication, acute respiratory distress syndrome (ARDS); expression of these genes served as our pCQAs for initial in vitro evaluation of product potency. We evaluated mRNA expression for three distinct donors to assess inter-donor repeatability, as well as for one donor in three distinct batches to assess within-donor, inter-batch variability. Finally, we assessed gene expression at the protein level for a subset of the panel to confirm successful translation. Our results indicated that MSCs expanded with this microcarrier-microbioreactor approach exhibited reasonable donor-to-donor repeatability and reliable batch-to-batch reproducibility of pCQAs. Interestingly, the baseline conditions of this microcarrier-microbioreactor approach also significantly improved expression of several key pCQAs at the gene and protein expression levels and reduced total media consumption relative to TCPS culture. This proof-of-concept study illustrates key benefits of this approach to therapeutic cell process development for MSCs and other anchorage-dependent cells that are candidates for cell therapies.
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- 2024
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69. A multispectral 3D live organoid imaging platform to screen probes for fluorescence guided surgery
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Bernadette Jeremiasse, Ravian L van Ineveld, Veerle Bok, Michiel Kleinnijenhuis, Sam de Blank, Maria Alieva, Hannah R Johnson, Esmée J van Vliet, Amber L Zeeman, Lianne M Wellens, Gerard Llibre-Palomar, Mario Barrera Román, Alessia Di Maggio, Johanna F Dekkers, Sabrina Oliveira, Alexander L Vahrmeijer, Jan J Molenaar, Marc HWA Wijnen, Alida FW van der Steeg, Ellen J Wehrens, and Anne C Rios
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Fluorescence-guided Surgery ,Patient-derived Organoids ,Multi-spectral 3D Imaging ,Neuroblastoma ,Breast Cancer ,Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Abstract
Abstract Achieving complete tumor resection is challenging and can be improved by real-time fluorescence-guided surgery with molecular-targeted probes. However, pre-clinical identification and validation of probes presents a lengthy process that is traditionally performed in animal models and further hampered by inter- and intra-tumoral heterogeneity in target expression. To screen multiple probes at patient scale, we developed a multispectral real-time 3D imaging platform that implements organoid technology to effectively model patient tumor heterogeneity and, importantly, healthy human tissue binding.
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- 2024
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70. Thermostable in vitro transcription-translation compatible with microfluidic droplets
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Ana L. J. L. Ribeiro, Patricia Pérez-Arnaiz, Mercedes Sánchez-Costa, Lara Pérez, Marcos Almendros, Liisa van Vliet, Fabrice Gielen, Jesmine Lim, Simon Charnock, Florian Hollfelder, J. Eduardo González-Pastor, José Berenguer, and Aurelio Hidalgo
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In vitro transcription and translation ,Thermus thermophiles ,Droplet microfluidics ,Cell-free protein expression ,Thermozymes ,Microbiology ,QR1-502 - Abstract
Abstract Background In vitro expression involves the utilization of the cellular transcription and translation machinery in an acellular context to produce one or more proteins of interest and has found widespread application in synthetic biology and in pharmaceutical biomanufacturing. Most in vitro expression systems available are active at moderate temperatures, but to screen large libraries of natural or artificial genetic diversity for highly thermostable enzymes or enzyme variants, it is instrumental to enable protein synthesis at high temperatures. Objectives Develop an in vitro expression system operating at high temperatures compatible with enzymatic assays and with technologies that enable ultrahigh-throughput protein expression in reduced volumes, such as microfluidic water-in-oil (w/o) droplets. Results We produced cell-free extracts from Thermus thermophilus for in vitro translation including thermostable enzymatic cascades for energy regeneration and a moderately thermostable RNA polymerase for transcription, which ultimately limited the temperature of protein synthesis. The yield was comparable or superior to other thermostable in vitro expression systems, while the preparation procedure is much simpler and can be suited to different Thermus thermophilus strains. Furthermore, these extracts have enabled in vitro expression in microfluidic droplets at high temperatures for the first time. Conclusions Cell-free extracts from Thermus thermophilus represent a simpler alternative to heavily optimized or pure component thermostable in vitro expression systems. Moreover, due to their compatibility with droplet microfluidics and enzyme assays at high temperatures, the reported system represents a convenient gateway for enzyme screening at higher temperatures with ultrahigh-throughput.
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- 2024
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71. Combination of 3D Printing, Plasma Polymerization, and Bioactive Coatings Towards Fabrication of Eggshell Biowaste/Polycaprolactone Composite Scaffolds for Bone Regeneration
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Jafari, Arman, Afarian, Aram-Sevag, Amirsadeghi, Armin, van Vliet, Patrick Piet, Darvish, Mahdi, Watson, Sean, Mousavi, Ali, Niknezhad, Vahid, Andelfinger, Gregor, Reuter, Stephan, Wertheimer, Michael R., Ajji, Abdellah, and Savoji, Houman
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- 2024
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72. False springs in the Netherlands: climate change impact assessment with the false spring damage indicator model
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Bosdijk, Joep, de Feiter, Vincent S., Gaiser, Annika, Smink, Thijs, Thorkelsdottir, Gudrun, van Vliet, Arnold J. H., and Luedeling, Eike
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- 2024
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73. Anomalous NO2 emitting ship detection with TROPOMI satellite data and machine learning
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Kurchaba, Solomiia, van Vliet, Jasper, Verbeek, Fons J., and Veenman, Cor J.
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Computer Science - Machine Learning ,Physics - Atmospheric and Oceanic Physics - Abstract
Starting from 2021, more demanding $\text{NO}_\text{x}$ emission restrictions were introduced for ships operating in the North and Baltic Sea waters. Since all methods currently used for ship compliance monitoring are financially and time demanding, it is important to prioritize the inspection of ships that have high chances of being non-compliant. The current state-of-the-art approach for a large-scale ship $\text{NO}_\text{2}$ estimation is a supervised machine learning-based segmentation of ship plumes on TROPOMI/S5P images. However, challenging data annotation and insufficiently complex ship emission proxy used for the validation limit the applicability of the model for ship compliance monitoring. In this study, we present a method for the automated selection of potentially non-compliant ships using a combination of machine learning models on TROPOMI satellite data. It is based on a proposed regression model predicting the amount of $\text{NO}_\text{2}$ that is expected to be produced by a ship with certain properties operating in the given atmospheric conditions. The model does not require manual labeling and is validated with TROPOMI data directly. The differences between the predicted and actual amount of produced $\text{NO}_\text{2}$ are integrated over observations of the ship in time and are used as a measure of the inspection worthiness of a ship. To assure the robustness of the results, we compare the obtained results with the results of the previously developed segmentation-based method. Ships that are also highly deviating in accordance with the segmentation method require further attention. If no other explanations can be found by checking the TROPOMI data, the respective ships are advised to be the candidates for inspection.
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- 2023
74. Studies of New Physics in $B^0_q-\bar{B}^0_q$ Mixing and Implications for Leptonic Decays
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De Bruyn, Kristof, Fleischer, Robert, Malami, Eleftheria, and van Vliet, Philine
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High Energy Physics - Phenomenology ,High Energy Physics - Experiment - Abstract
The phenomenon of $B^0_q$-$\bar{B}^0_q$ mixing ($q=d,s$) provides a sensitive probe for physics beyond the Standard Model. We have a careful look at the determination of the Unitarity Triangle apex, which is needed for the Standard Model predictions of the $B_q$ mixing parameters, and explore how much space for New Physics is left through the current data. We study the impact of tensions between inclusive and exclusive determinations of the CKM matrix elements $|V_{ub}|$ and $|V_{cb}|$, and focus on the $\gamma$ angle extraction. We present various future scenarios and discuss the application of these results for leptonic rare $B$ decays, which allows us to minimise the CKM parameter impact in the New Physics searches. Performing future projections, we explore and illustrate the impact of increased precision on key input quantities. It will be exciting to see how more precise data in the future high-precision era of flavour physics can lead to a much sharper picture., Comment: 8 pages, 2 figures, Contribution to the Proceedings of the 8th Symposium on Prospects in the Physics of Discrete Symmetries (DISCRETE 2022), 7-11 November 2022, Baden-Baden, Germany
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- 2023
75. TMED inhibition suppresses cell surface PD-1 expression and overcomes T cell dysfunction
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Gal Markel, Michal J Besser, Eytan Ruppin, Oscar Krijgsman, Daniel S Peeper, Judit Díaz-Gómez, Ettai Markovits, David W Vredevoogd, Georgi Apriamashvili, Pierre L Levy, Sanju Sinha, Zowi R Huinen, Nils L Visser, Beaunelle de Bruijn, Julia Boshuizen, Susan E van Hal-van Veen, Maarten A Ligtenberg, Onno B Bleijerveld, Chun-Pu Lin, Santiago Duro Sánchez, Juan Simon Nieto, Alex van Vliet, and Maarten Altelaar
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background Blockade of the programmed cell death protein 1 (PD-1) immune checkpoint (ICB) is revolutionizing cancer therapy, but little is known about the mechanisms governing its expression on CD8 T cells. Because PD-1 is induced during activation of T cells, we set out to uncover regulators whose inhibition suppresses PD-1 abundance without adversely impacting on T cell activation.Methods To identify PD-1 regulators in an unbiased fashion, we performed a whole-genome, fluorescence-activated cell sorting (FACS)-based CRISPR-Cas9 screen in primary murine CD8 T cells. A dual-readout design using the activation marker CD137 allowed us to uncouple genes involved in PD-1 regulation from those governing general T cell activation.Results We found that the inactivation of one of several members of the TMED/EMP24/GP25L/p24 family of transport proteins, most prominently TMED10, reduced PD-1 cell surface abundance, thereby augmenting T cell activity. Another client protein was cytotoxic T lymphocyte-associated protein 4 (CTLA-4), which was also suppressed by TMED inactivation. Treatment with TMED inhibitor AGN192403 led to lysosomal degradation of the TMED-PD-1 complex and reduced PD-1 abundance in tumor-infiltrating CD8 T cells (TIL) in mice, thus reversing T cell dysfunction. Clinically corroborating these findings, single-cell RNA analyses revealed a positive correlation between TMED expression in CD8 TIL, and both a T cell dysfunction signature and lack of ICB response. Similarly, patients receiving a TIL product with high TMED expression had a shorter overall survival.Conclusion Our results uncover a novel mechanism of PD-1 regulation, and identify a pharmacologically tractable target whose inhibition suppresses PD-1 abundance and T cell dysfunction.
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- 2024
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76. Escherichia coli ST117: exploring the zoonotic hypothesis
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A. B. S. Saidenberg, S. M. Edslev, S. Hallstrøm, A. Rasmussen, D. E. Park, M. Aziz, B. dos Santos Queiroz, A. A. S. Baptista, F. Barbosa, V. G. P. Rocha, Arnoud H. M. van Vliet, A. Dalsgaard, L. B. Price, T. Knöbl, and M. Stegger
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Escherichia coli ,ExPEC ,FZEC ,poultry ,ST117 ,Microbiology ,QR1-502 - Abstract
ABSTRACT Extraintestinal pathogenic Escherichia coli (ExPEC) can lead to severe infections, with additional risks of increasing antimicrobial resistance rates. Genotypic similarities between ExPEC and avian pathogenic E. coli (APEC) support a possible role for a poultry meat reservoir in human disease. Some genomic studies have been done on the ST117 lineage which contaminates poultry meat, carries multidrug resistance, can be found in the human intestinal microbiota, and causes human extraintestinal disease. This study analyzed the genomes of 61 E. coli from Brazilian poultry outbreaks focusing on ST117, to further define its possible zoonotic characteristics by genotypic and phylogenomic analyses, along with 1,699 worldwide ST117 isolates originating from human, animal, and environment sources. A predominance of ST117 was detected in the Brazilian isolates (n = 20/61) frequently carrying resistance to critical antibiotics (>86%) linked to IncFII, IncI1, or IncX4 replicons. High similarities were found between IncX4 from Brazilian outbreaks and those from E. coli recovered from imported Brazilian poultry meat and human clinical cases. The ST117 phylogeny showed non-specificity according to host and continent and an AMR index score indicated the highest resistance in Asia and South America, with the latter statistically more resistant and overrepresented with resistance to extended-spectrum beta-lactamases (ESBL). Most ST117 human isolates were predicted to have a poultry origin (93%, 138/148). In conclusion, poultry is a likely source for zoonotic ExPEC strains, particularly the ST117 lineage which can also serve as a reservoir for resistance determinants against critical antibiotics encoded on highly transmissible plasmids.IMPORTANCECertain extraintestinal pathogenic Escherichia coli (ExPEC) are particularly important as they affect humans and animals. Lineages, such as ST117, are predominant in poultry and frequent carriers of antibiotic resistance, presenting a risk to humans handling or ingesting poultry products. We analyzed ExPEC isolates causing outbreaks in Brazilian poultry, focusing on the ST117 as the most detected lineage. Genomic comparisons with international isolates from humans and animals were performed describing the potential zoonotic profile. The Brazilian ST117 isolates carried resistance determinants against critical antibiotics, mainly on plasmids, in some cases identical to those carried by international isolates. South American ST117 isolates from all sources generally exhibit more resistance, including to critical antibiotics, and worldwide, the vast majority of human isolates belonging to this lineage have a predicted poultry origin. As the world's largest poultry exporter, Brazil has an important role in developing strategies to prevent the dissemination of multidrug-resistant zoonotic ExPEC strains.
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- 2024
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77. Living water in Ezekiel 47: How eco-hermeneutics raise climate awareness among Christian youth
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Geke van Vliet
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ezekiel ,ecological crisis ,water ,south african context ,anglican church ,climate crisis ,christian spirituality ,practical theology. ,The Bible ,BS1-2970 ,Practical Theology ,BV1-5099 - Abstract
This article examined the role of biblical interpretation amid the world’s water crisis. It aimed to make biblical texts accessible to non-specialist readers by using several methods of interpretation. The methods used were a combination of biblical interpretation, revisionist ecological hermeneutics and empirical research in the form of interviews with young adults in the Anglican Church in South Africa. This combination was applied to the role of water in Ezekiel 47. It showed that while traditional biblical interpretation is important for understanding the biblical context, revisionist ecological hermeneutics can help in understanding the ecological aspect of the text. This combination fitted the interview results, in which interviewees shared how learning about ecological aspects helped to make the Bible more relevant in today’s ecological crisis. A deeper biblical understanding, a combination of traditional interpretation and ecological hermeneutics, could lead to more awareness and responsibility among Christians to care for creation. This form of hermeneutics could be applied to other Bible texts to grow awareness. Contribution: Interviewees argued that there is a lack of awareness in their environments about the causes and consequences of the ecological crisis. One of the main consequences of this crisis is related to water, with floods and droughts already becoming more severe. While this is often overlooked, the Bible could be of use in the water crisis in today’s world. This article has made a beginning in showing how biblical interpretation can effectively create climate awareness among churchgoers by speaking to their spirituality.
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- 2024
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78. Adaptive brachytherapy for cervical cancer in combined 1.5 T MR/HDR suite: Impact of repeated imaging
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Katelijne M. Van Vliet-van den Ende, Paulien G. Hoogendoorn-Mulder, Rogier I. Schokker, Marinus A. Moerland, Petra S. Kroon, Judith M. Roesink, Raquel Dávila Fajardo, Femke Van der Leij, and Ina M. Jürgenliemk-Schulz
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Cervical cancer ,MRI guided brachytherapy ,Adaptive workflow ,Repeated imaging ,OARs ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Introduction: At our department we have a dedicated 1.5 Tesla MRI/HDR brachytherapy suite, which provides the possibility of repeated MRI scanning before, during and after applicator insertion and before and/or after irradiation for patients with advanced cervical cancer. In this study we analysed the effect of this adaptive workflow. We investigated the number of interventions, their impact on organ doses (OAR) and the respective dose differences between total prescribed and total delivered doses. Materials and methods: Seventy patients with locally advanced cervical cancer FIGO2009 stages IB-IVA, treated from June 2016 till August 2020, were retrospectively analysed. The standard brachytherapy schedule consisted of two applicator insertions and delivery of three or four HDR fractions.OARs were recontoured on the repeated MRI scans. The D2cm3 dose difference between total prescribed and total delivered dose for bladder, rectum, sigmoid and bowel were calculated. Results: In total 153 interventions were performed, 3 replacements of the applicator, 23 adaptations of needle positions, bladder filling was changed 74 times and repeated rectal degassing 53 times. The impact of the rectal interventions was on average −1.2 Gy EQD23. Dose differences between total delivered and total prescribed D2cm3 for bladder, rectum, sigmoid and bowel were −0.6, 0.3, 2.2 and −0.6 Gy EQD23, respectively. Conclusions: An MRI scanner integrated into the brachytherapy suite enables multiple interventions based on the scans before treatment planning and dose delivery. This allows for customized treatment according to the changing anatomy of the individual patient and a better estimation of the delivered dose.
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- 2024
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79. Vaginal assisted NOTES hysterectomy in The Netherlands; A prospective cohort study
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Ilse P.W. Bekkers, Rebecca Henschen, Nicol A.C. Smeets, Huib A.A.M. van Vliet, Anne Damoiseaux, and Martine M.L.H. Wassen
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Vaginal hysterectomy ,VNOTES ,Vaginal assisted NOTES hysterectomy ,Laparoscopy ,Gynecology and obstetrics ,RG1-991 - Abstract
Objectives: Vaginal assisted Natural Orifice Transluminal Endoscopic Surgery (NOTES) combines the benefits of vaginal and endoscopic surgery. This study presents the results of the first vaginal assisted NOTES hysterectomies (VANH) in The Netherlands. Study design: A prospective cohort study was performed in two non-academic teaching hospitals in The Netherlands. Data was collected from patients who underwent a VANH for benign indications between August 2019 and April 2023. Baseline characteristics and data of intra- and postoperative surgical outcomes were recorded and analysed. The VANHs were performed by four experienced vaginal and endoscopic gynaecological surgeons. Results: A total of 200 patients underwent a VANH. Indications were dysfunctional menstrual bleeding (61 %; n = 122), abnormal cervical cytology (15.5 %; n = 31), abdominal pain (11.5 %; n = 23), post ablation/sterilization pain syndrome (3.5 %; n = 7), uterine fibroids (5.0 %; n = 10), atypical endometrial hyperplasia (2.5 %; n = 5) and Lynch or BRCA gene mutation carriers (1.0 %, n = 2). The mean surgical time was 61.4 min ( ± 22.8 min) with a mean blood loss of 88 mL ( ± 89 mL) and a mean uterine weight of 150 g ( ± 112 g). In 2.0 % (n = 4) of the cases a conversion was necessary. Same day discharge (SDD) was feasible in 80.2 % (n = 105) of the patients planned in day-care. In 2.0 % (n = 4) an intra-operative complication and in 9.0 % (n = 18) a post-operative complication occurred. Conclusion: This study shows vNOTES to be a safe and feasible surgical technique and can be safely implemented with appropriate patient selection and skilled surgeons. It highlights the importance of surgeon awareness of the challenges inherent in the initial stages of the implementation of a new surgical technique when performing their first vNOTES procedures. Additional randomized clinical trials are needed to show superiority of vNOTES compared to traditional surgery.
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- 2024
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80. Behandeling van neurologische aandoeningen
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van Vliet, P., Achterberg, S., van den Brink, Geert, editor, Lindsen, Frans, editor, Dieperink, Willem, editor, and van Paassen-Remmerswaal, Chantal, editor
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- 2025
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81. Palliative Care in Severe Neurotrauma Patients in the Intensive Care Unit
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Dolmans, Rianne G. F., Robertson, Faith C., Eijkholt, Marleen, van Vliet, Peter, and Broekman, Marike L. D.
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- 2023
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82. A novel hepatocyte ketone production assay to help the selection of nutrients for the ketogenic diet treatment of epilepsy
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Hester Meeusen, Alessia Romagnolo, Sophie A. C. Holsink, Thijs J. M. van den Broek, Ardy van Helvoort, Jan A. Gorter, Erwin A. van Vliet, J. Martin Verkuyl, Jose P. Silva, and Eleonora Aronica
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In vitro assay ,Lipids/oxidation ,Liver ,Ketogenic diet ,β-Hydroxybutyrate ,Dietary fat ,Medicine ,Science - Abstract
Abstract The classic ketogenic diet is an effective treatment option for drug-resistant epilepsy, but its high fat content challenges patient compliance. Optimizing liver ketone production guided by a method comparing substrates for their ketogenic potential may help to reduce the fat content of the diet without loss in ketosis induction. Here, we present a liver cell assay measuring the β-hydroxybutyrate (βHB) yield from fatty acid substrates. Even chain albumin-conjugated fatty acids comprising between 4 and 18 carbon atoms showed a sigmoidal concentration-βHB response curve (CRC) whereas acetate and omega-3 PUFAs produced no CRC. While CRCs were not distinguished by their half-maximal effective concentration (EC50), they differed by maximum response, which related inversely to the carbon chain length and was highest for butyrate. The assay also suitably assessed the βHB yield from fatty acid blends detecting shifts in maximum response from exchanging medium chain fatty acids for long chain fatty acids. The assay further detected a dual role for butyrate and hexanoic acid as ketogenic substrate at high concentration and ketogenic enhancer at low concentration, augmenting the βHB yield from oleic acid and a fatty acid blend. The assay also found propionate to inhibit ketogenesis from oleic acid and a fatty acid blend at low physiological concentration. Although the in vitro assay shows promise as a tool to optimize the ketogenic yield of a fat blend, its predictive value requires human validation.
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- 2024
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83. Worldwide absence of canonical benzimidazole resistance-associated mutations within β-tubulin genes from Ascaris
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Ben P. Jones, Kezia Kozel, Allen Jethro I. Alonte, Kennesa Klariz R. Llanes, Alexandra Juhász, Umer Chaudhry, Sara Roose, Peter Geldhof, Vicente Y. Belizario, Peter Nejsum, J. Russell Stothard, E. James LaCourse, Arnoud H. M. van Vliet, Vachel Gay V. Paller, and Martha Betson
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Ascaris ,Benzimidazole ,Drug-resistance ,β-Tubulin ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background The giant roundworm Ascaris is an intestinal nematode, causing ascariasis by infecting humans and pigs worldwide. Recent estimates suggest that Ascaris infects over half a billion people, with chronic infections leading to reduced growth and cognitive ability. Ascariasis affects innumerable pigs worldwide and is known to reduce production yields via decreased growth and condemnation of livers. The predominant anthelminthic drugs used to treat ascariasis are the benzimidazoles. Benzimidazoles interact with β-tubulins and block their function, and several benzimidazole resistance-associated mutations have been described in the β-tubulins of ruminant nematodes. Recent research on ascarids has shown that these canonical benzimidazole resistance-associated mutations are likely not present in the β-tubulins of Ascaris, Ascaridia or Parascaris, even in phenotypically resistant populations. Methods To further determine the putative absence of key β-tubulin polymorphisms, we screened two β-tubulin isotypes of Ascaris, highly expressed in adult worms. Using adult and egg samples of Ascaris obtained from pigs and humans worldwide, we performed deep amplicon sequencing to look for canonical resistance-associated mutations in Ascaris β-tubulins. Subsequently, we examined these data in closer detail to study the population dynamics of Ascaris and genetic diversity within the two isotypes and tested whether genotypes appeared to partition across human and pig hosts. Results In the 187 isolates, 69 genotypes were found, made up of eight haplotypes of β-tubulin isotype A and 20 haplotypes of isotype B. Single nucleotide polymorphisms were seen at 14 and 37 positions for β-tubulin isotype A and isotype B, respectively. No evidence of any canonical benzimidazole resistance-associated mutations was found in either human- or pig-derived Ascaris isolates. There was, however, a difference in the genetic diversity of each isotype and distribution of β-tubulin genotypes between human- and pig-derived Ascaris. Statistical tests of population differentiation show significant differences (p
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- 2024
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84. A genetically encoded biosensor to monitor dynamic changes of c-di-GMP with high temporal resolution
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Andreas Kaczmarczyk, Simon van Vliet, Roman Peter Jakob, Raphael Dias Teixeira, Inga Scheidat, Alberto Reinders, Alexander Klotz, Timm Maier, and Urs Jenal
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Science - Abstract
Abstract Monitoring changes of signaling molecules and metabolites with high temporal resolution is key to understanding dynamic biological systems. Here, we use directed evolution to develop a genetically encoded ratiometric biosensor for c-di-GMP, a ubiquitous bacterial second messenger regulating important biological processes like motility, surface attachment, virulence and persistence. The resulting biosensor, cdGreen2, faithfully tracks c-di-GMP in single cells and with high temporal resolution over extended imaging times, making it possible to resolve regulatory networks driving bimodal developmental programs in different bacterial model organisms. We further adopt cdGreen2 as a simple tool for in vitro studies, facilitating high-throughput screens for compounds interfering with c-di-GMP signaling and biofilm formation. The sensitivity and versatility of cdGreen2 could help reveal c-di-GMP dynamics in a broad range of microorganisms with high temporal resolution. Its design principles could also serve as a blueprint for the development of similar, orthogonal biosensors for other signaling molecules, metabolites and antibiotics.
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- 2024
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85. Complexity in tame quantum theories
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Thomas W. Grimm, Lorenz Schlechter, and Mick van Vliet
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Differential and Algebraic Geometry ,Effective Field Theories ,Integrable Field Theories ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
Abstract Inspired by the notion that physical systems can contain only a finite amount of information or complexity, we introduce a framework that allows for quantifying the amount of logical information needed to specify a function or set. We then apply this methodology to a variety of physical systems and derive the complexity of parameter-dependent physical observables and coupling functions appearing in effective Lagrangians. In order to implement these ideas, it is essential to consider physical theories that can be defined in an o-minimal structure. O-minimality, a concept from mathematical logic, encapsulates a tameness principle. It was recently argued that this property is inherent to many known quantum field theories and is linked to the UV completion of the theory. To assign a complexity to each statement in these theories one has to further constrain the allowed o-minimal structures. To exemplify this, we show that many physical systems can be formulated using Pfaffian o-minimal structures, which have a well-established notion of complexity. More generally, we propose adopting sharply o-minimal structures, recently introduced by Binyamini and Novikov, as an overarching framework to measure complexity in quantum theories.
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- 2024
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86. Procedural sedation by advanced practice providers in the emergency medical service in the Netherlands: a retrospective study
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Risco van Vliet, Lennert Breedveld, Annemieke A.J. Heutinck, Bram H.A. Ockeloen, Arnoud W.J. van ’ Hof, and Xavier R.J. Moors
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Procedural sedation and analgesia ,Ambulance ,Emergency medical service ,Advanced practice providers ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Background Procedural sedation and analgesia (PSA) is a technique of administering sedatives to induce a state that allows the patient to tolerate painful procedures while maintaining cardiorespiratory function, a condition that is frequently desired prehospital. Non-physician prehospital clinicians often have a limited scope of practice when it comes to providing analgesia and sedation; sometimes resulting in a crew request for back-up from physician-staffed prehospital services.“. This is also the case if sedation is desirable. Advanced practice providers (APPs), who are legally authorized and trained to carry out this procedure, may be a solution when the physician-staffed service is not available or will not be available in time. Methods The aim of this study is to gain insight in the circumstances in which an APP, working at the Dutch ambulance service “RAV Brabant MWN” from January 2019 to December 2022, uses propofol for PSA or to provide sedation. With this a retrospective observational document study we describe the characteristics of patients and ambulance runs and evaluates the interventions in terms of safety. Results During the study period, the APPs administered propofol 157 times for 135 PSA and in 22 cases for providing sedation. The most common indication was musculoskeletal trauma such as fracture care or the reduction of joint dislocation. In 91% of the situations where propofol was used, the predetermined goal e.g. alignment of fractured extremity, repositioning of luxated joint or providing sedation the goal was achieved. There were 12 cases in which one or more adverse events were documented and all were successfully resolved by the APP. There were no cases of laryngospam, airway obstruction, nor anaphylaxis. None of the adverse events led to unexpected hospitalization or death. Conclusion During the study period, the APPs performed 135 PSAs and provided 22 sedations. The success rate of predetermined goals was higher than that stated in the literature. Although there were a number of side effects, their incidences were lower than those reported in the literature, and these were resolved by the APP during the episode of care. Applying a PSA by an APP at the EMS “RAV Brabant MWN” appears to be safe with a high success rate.
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- 2024
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87. Pancreatic cancer-associated fibroblasts modulate macrophage differentiation via sialic acid-Siglec interactions
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Kelly Boelaars, Ernesto Rodriguez, Zowi R. Huinen, Chang Liu, Di Wang, Babet O. Springer, Katarzyna Olesek, Laura Goossens-Kruijssen, Thomas van Ee, Dimitri Lindijer, Willemijn Tak, Aram de Haas, Laetitia Wehry, Joline P. Nugteren-Boogaard, Aleksandra Mikula, Charlotte M. de Winde, Reina E. Mebius, David A. Tuveson, Elisa Giovannetti, Maarten F. Bijlsma, Manfred Wuhrer, Sandra J. van Vliet, and Yvette van Kooyk
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Biology (General) ,QH301-705.5 - Abstract
Abstract Despite recent advances in cancer immunotherapy, pancreatic ductal adenocarcinoma (PDAC) remains unresponsive due to an immunosuppressive tumor microenvironment, which is characterized by the abundance of cancer-associated fibroblasts (CAFs). Once identified, CAF-mediated immune inhibitory mechanisms could be exploited for cancer immunotherapy. Siglec receptors are increasingly recognized as immune checkpoints, and their ligands, sialic acids, are known to be overexpressed by cancer cells. Here, we unveil a previously unrecognized role of sialic acid-containing glycans on PDAC CAFs as crucial modulators of myeloid cells. Using multiplex immunohistochemistry and transcriptomics, we show that PDAC stroma is enriched in sialic acid-containing glycans compared to tumor cells and normal fibroblasts, and characterized by ST3GAL4 expression. We demonstrate that sialic acids on CAF cell lines serve as ligands for Siglec-7, -9, -10 and -15, distinct from the ligands on tumor cells, and that these receptors are found on myeloid cells in the stroma of PDAC biopsies. Furthermore, we show that CAFs drive the differentiation of monocytes to immunosuppressive tumor-associated macrophages in vitro, and that CAF sialylation plays a dominant role in this process compared to tumor cell sialylation. Collectively, our findings unravel sialic acids as a mechanism of CAF-mediated immunomodulation, which may provide targets for immunotherapy in PDAC.
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- 2024
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88. Analytic and numerical bootstrap for the long-range Ising model
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Connor Behan, Edoardo Lauria, Maria Nocchi, and Philine van Vliet
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Boundary Quantum Field Theory ,Conformal and W Symmetry ,Nonperturbative Effects ,Renormalization Group ,Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
Abstract We combine perturbation theory with analytic and numerical bootstrap techniques to study the critical point of the long-range Ising (LRI) model in two and three dimensions. This model interpolates between short-range Ising (SRI) and mean-field behaviour. We use the Lorentzian inversion formula to compute infinitely many three-loop corrections in the two-dimensional LRI near the mean-field end. We further exploit the exact OPE relations that follow from bulk locality of the LRI to compute infinitely many two-loop corrections near the mean-field end, as well as some one-loop corrections near SRI. By including such exact OPE relations in the crossing equations for LRI we set up a very constrained bootstrap problem, which we solve numerically using SDPB. We find a family of sharp kinks for two- and three-dimensional theories which compare favourably to perturbative predictions, as well as some Monte Carlo simulations for the two-dimensional LRI.
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- 2024
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89. New Physics in $B_q^0-\bar B_q^0$ Mixing: Present Challenges, Prospects, and Implications for $B_q^0\to\mu^+\mu^-$
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De Bruyn, Kristof, Fleischer, Robert, Malami, Eleftheria, and van Vliet, Philine
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High Energy Physics - Phenomenology ,High Energy Physics - Experiment - Abstract
The phenomenon of $B^0_q-\bar B^0_q$ mixing ($q=d,s$) provides a sensitive probe for physics beyond the Standard Model. We explore the corresponding space for New Physics left through the current data, having a careful look at analyses of the Unitarity Triangle that are needed for the Standard Model predictions of the $B_q$ mixing parameters. In particular, we explore the impact of tensions between inclusive and exclusive determinations of the CKM matrix elements $|V_{ub}|$ and $|V_{cb}|$. Moreover, we focus on the angle $\gamma$ of the Unitarity Triangle, comparing measurements from $B\to DK$ and $B\to\pi\pi$, $\rho\pi$, $\rho\rho$ decays, where the latter are typically interpreted in terms of the angle $\alpha$. We discuss various scenarios and present the corresponding state-of-the-art constraints on the New Physics parameters of $B_q^0-\bar B_q^0$ mixing. We point out that these results have an interesting application in the analysis of rare $B_q^0\to \mu^+\mu^-$ decays, allowing us to minimise the impact of CKM parameters in the search for New Physics. In view of the high-precision era, we make future projections. Interestingly, we find that for the extraction of the New Physics parameters in the $B_d$ system the determination of the apex of the Unitarity Triangle results in a key limiting factor. By contrast, the corresponding impact is negligible for the $B_s$ system, making it a promising candidate to reveal sources of New Physics., Comment: 45 pages, 14 figures and 6 tables. This version matches the published version
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- 2022
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90. Differences Between the Pierre Auger Observatory and Telescope Array Spectra: Systematic Effects or Indication of a Local Source of Ultra-High-Energy Cosmic Rays?
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Plotko, Pavlo, van Vliet, Arjen, Rodrigues, Xavier, and Winter, Walter
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
The Pierre Auger Observatory (PAO) and Telescope Array (TA) collaborations report significant differences in the observed energy spectra of ultra-high-energy cosmic rays (UHECRs) above 30~EeV. In this work we present a joint fit of TA and PAO data using the rigidity-dependent maximum energy model, including a full marginalization over all relevant parameters. We test two possible scenarios to explain these differences. One is that they are due to complex energy-dependent experimental systematics; the other is the presence of a local astrophysical source in the Northern Hemisphere, which is only visible by the TA experiment. We show that the astrophysical and systematic scenarios improve the explanation of the data equally well, compared to the scenario where both experiments observe the same UHECR flux from a cosmological source distribution and have energy-independent systematics. We test different mass compositions emitted from the local source and conclude that the data are best described by a source lying at a distance below 26~Mpc that emits cosmic rays dominated by the silicon mass group. We also discuss possible source candidates, and the possible role of the putative local UHECR source in the observed TA anisotropy and in the differences in TA spectral data from different declination bands., Comment: Accepted for publication in ApJ; 24 pages, 10 figures, 5 tables
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- 2022
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91. Bootstrapping line defects with $O(2)$ global symmetry
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Gimenez-Grau, Aleix, Lauria, Edoardo, Liendo, Pedro, and van Vliet, Philine
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High Energy Physics - Theory ,Condensed Matter - Strongly Correlated Electrons - Abstract
We use the numerical bootstrap to study conformal line defects with $O(2)$ global symmetry. Our results are very general and capture in particular conformal line defects originating from bulk CFTs with a continuous global symmetry, which can either be preserved or partially broken by the presence of the defect. We begin with an agnostic approach and perform a systematic bootstrap study of correlation functions between two canonical operators on the defect: the displacement and the tilt. We then focus on two interesting theories: a monodromy line defect and a localized magnetic field line defect. To this end, we combine the numerical bootstrap with the $\varepsilon$-expansion, where we complement existing results in the literature with additional calculations. For the monodromy defect our numerical results are consistent with expectations, with known analytic solutions sitting inside our numerical bounds. For the localized magnetic field line defect our plots show a series of intriguing cusps which we explore., Comment: 54 pages, 11 figures
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- 2022
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92. CRPropa 3.2 -- an advanced framework for high-energy particle propagation in extragalactic and galactic spaces
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Batista, Rafael Alves, Tjus, Julia Becker, Dörner, Julien, Dundovic, Andrej, Eichmann, Björn, Frie, Antonius, Heiter, Christopher, Hoerbe, Mario R., Kampert, Karl-Heinz, Merten, Lukas, Müller, Gero, Reichherzer, Patrick, Saveliev, Andrey, Schlegel, Leander, Sigl, Günter, van Vliet, Arjen, and Winchen, Tobias
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Astrophysics of Galaxies ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
The landscape of high- and ultra-high-energy astrophysics has changed in the last decade, largely due to the inflow of data collected by large-scale cosmic-ray, gamma-ray, and neutrino observatories. At the dawn of the multimessenger era, the interpretation of these observations within a consistent framework is important to elucidate the open questions in this field. CRPropa 3.2 is a Monte Carlo code for simulating the propagation of high-energy particles in the Universe. This version represents a major leap forward, significantly expanding the simulation framework and opening up the possibility for many more astrophysical applications. This includes, among others: efficient simulation of high-energy particles in diffusion-dominated domains, self-consistent and fast modelling of electromagnetic cascades with an extended set of channels for photon production, and studies of cosmic-ray diffusion tensors based on updated coherent and turbulent magnetic-field models. Furthermore, several technical updates and improvements are introduced with the new version, such as: enhanced interpolation, targeted emission of sources, and a new propagation algorithm (Boris push). The detailed description of all novel features is accompanied by a discussion and a selected number of example applications., Comment: 32 pages, 9 figures
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- 2022
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93. Experimental Investigation of Mode Diversity Reception Using an Optical Turbulence Generator and Digital Holography
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van Vliet, Vincent, Hout, Menno van den, van der Heide, Sjoerd, and Okonkwo, Chigo
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Physics - Optics ,Electrical Engineering and Systems Science - Signal Processing - Abstract
Mode diversity reception is experimentally investigated using an optical turbulence generator, off-axis digital holography, and digital demultiplexing. The results confirm improved fibre coupling efficiency when receiving the optical field using a multi-mode fibre instead of a single-mode fibre under turbulent conditions, specifically beam wander. The coupling loss is reduced by receiving additional modes., Comment: Accepted for presentation at European Conference on Optical Communications (ECOC) 2022
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- 2022
94. Factors influencing wildmeat trade in Guyana and expected changes in the context of the oil-related development prospects
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Franciany Braga-Pereira, Anupana Puran, David Oswin, Evi AD Paemelaere, and Nathalie van Vliet
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Amazon-Caribbean regions ,Commercial hunters ,Meat vendors ,Trade chain ,Ecology ,QH540-549.5 - Abstract
The recent offshore oil discovery in the Guiana Shield is expected to bring about significant changes to the area, such as increased GDP per capita, infrastructure development, and urbanization. The potential impact on the wild meat trade depends on factors influencing its demand and provision. Through interviews and group discussions with trade chain stakeholders in all towns of Guyana, we evaluate wildmeat trade sector and explored predicted changes on it in 2033 with the prospects for short term oil-related development. The most traded species in Guyana included paca, white-lipped peccary, deer, tapir and capybara and a total of 38.46 % (5 out of 13) of the taxa being traded is classified as threatened of extinction. Regions with higher population size and GDP per capita, are the main trade hubs for wildmeat. Access to improved preservation methods (e.g. freezers) and motorized transportation options (eg.: boat with engines and vehicles) significantly influence higher volumes of wildmeat traded. The economic growth anticipated in Guyana is expected to boost population growth and, by the same time, wildmeat demand in urban areas. Concomitantly, with improved infrastructure and increased access to electricity, wildmeat provision will be facilitated across a wider catchment area. Based on the assumption that cultural patterns shaping wildmeat demand and environmental regulations will likely not change at the same rapid path as economic growth in the next ten years, we predict wildmeat trade volumes to increase to 10,280 tons/year by 2033. We identify three main opportunities to ensure a sustainable wildmeat sector in the context of the economic boom: First, the sector requires to be well regulated through a licensing and a quota system that can be adequately enforced. Second, efforts to curve demand on the Coast need to be strengthened based on well designed and culturally adapted behaviour change campaigns. Third, local communities and indigenous people need to be empowered to protect and conserve their territories and wildlife resources, in particular with the authority to exclude illegal hunters.
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- 2024
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95. The Rod Steers the Globe in ATG9A-Mediated Lipid Transport
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Alexander R. van Vliet and Sharon A. Tooze
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Cytology ,QH573-671 - Published
- 2024
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96. Series: Public engagement with research. Part 3: Sharing power and building trust through partnering with communities in primary care research
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Jessica Drinkwater, Michelle Farr, Gary Hickey, Esther Van Vliet, Sophie Söderholm Werkö, Ingrid Klingmann, and Steven Blackburn
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Participatory research ,public engagement ,Co-production ,power sharing ,Medicine (General) ,R5-920 - Abstract
AbstractBackground This article focuses on potential strategies to support primary care researchers in working in partnership with the public and healthcare professionals. Partnership working can potentially to improve the relevance and usefulness of research and ensure better research and health outcomes.Discussion We describe what we mean by partnership working and the importance of reflecting on power and building trusting relationships. To share power in partnership working, it is essential to critically reflect on the multiple dimensions of power, their manifestations, and your own power. Power can influence relationships and therefore, it is essential to build trust with partners. Next, we outline how the context of primary care research and decisions about who you work with and how to work together, are vital considerations that are imbued with power. Lastly, we suggest different ways of working in partnership to address different dimensions of power. We provide examples from primary care research across Europe regarding how to recognise, tackle, and challenge, invisible, hidden and visible power.Conclusion We conclude by proposing three calls to actions to encourage researchers working in primary care to consider the multiple dimensions of power and move towards partnership working. First is to use participatory methods to improve the inclusivity of your research. Second is to include patients and the public in decisions about the design, delivery and development of research and its outcomes. Third is to address various systemic and institutional barriers which hinder partnership working.
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- 2024
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97. The one-carbon metabolism as an underlying pathway for placental DNA methylation – a systematic review
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Marjolein M van Vliet, Sam Schoenmakers, Joost Gribnau, and Régine P.M. Steegers-Theunissen
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DoHAD ,epigenetics ,nutrition ,human ,Genetics ,QH426-470 - Abstract
ABSTRACTEpigenetic modifications, including DNA methylation, are proposed mechanisms explaining the impact of parental exposures to foetal development and lifelong health. Micronutrients including folate, choline, and vitamin B12 provide methyl groups for the one-carbon metabolism and subsequent DNA methylation processes. Placental DNA methylation changes in response to one-carbon moieties hold potential targets to improve obstetrical care. We conducted a systematic review on the associations between one-carbon metabolism and human placental DNA methylation. We included 22 studies. Findings from clinical studies with minimal ErasmusAGE quality score 5/10 (n = 15) and in vitro studies (n = 3) are summarized for different one-carbon moieties. Next, results are discussed per study approach: (1) global DNA methylation (n = 9), (2) genome-wide analyses (n = 4), and (3) gene specific (n = 14). Generally, one-carbon moieties were not associated with global methylation, although conflicting outcomes were reported specifically for choline. Using genome-wide approaches, few differentially methylated sites associated with S-adenosylmethionine (SAM), S-adenosylhomocysteine (SAH), or dietary patterns. Most studies taking a gene-specific approach indicated site-specific relationships depending on studied moiety and genomic region, specifically in genes involved in growth and development including LEP, NR3C1, CRH, and PlGF; however, overlap between studies was low. Therefore, we recommend to further investigate the impact of an optimized one-carbon metabolism on DNA methylation and lifelong health.
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- 2024
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98. Series: Public engagement with research. Part 2: GPs and primary care researchers working inclusively with minoritised communities in health research to help address inequalities
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Yumna Masood, Anica Alvarez Nishio, Bella Starling, Shoba Dawson, Jon Salsberg, Steven Blackburn, Esther van Vliet, and Carina A.C.M Pittens
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Public engagement ,health inequalities ,minoritised communities ,primary care ,Medicine (General) ,R5-920 - Abstract
AbstractPublic engagement in health research is vital for addressing health disparities and promoting inclusivity among minoritised communities who often face barriers to accessing healthcare. Minoritised communities are groups, which have been made minorities by a dominant culture, race, ethnic group and/or social class and may experience health inequalities as a result. By incorporating diverse perspectives and lived experiences of minoritised communities, this approach aims to achieve contextually relevant research outcomes that reduce health inequalities and improve overall well-being. However, underrepresentation and lack of inclusivity challenges persist, necessitating the establishment of inclusive partnerships and grassroots participatory methodologies.To foster inclusive public engagement, it is important to overcome structural and cultural barriers, address socioeconomic challenges, and build trust with minoritised communities. This can be achieved by promoting a cultural shift that values inclusivity, providing comprehensive training to researchers, and collecting rigorous data on engagement demographics for transparency and accountability. Involving minoritised communities in decision-making through participatory research approaches enhances trust and yields successful outcomes. Additionally, allocating sufficient resources, collaborating in co-production, and prioritising the diverse needs and perspectives of stakeholders contribute to fostering inclusive public engagement in research.Overall, inclusive engagement practices particularly in primary care research have the potential to reduce health inequalities and cater to the unique requirements of minoritised communities, thereby creating more impactful outcomes and promoting equitable healthcare access.
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- 2024
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99. Predictors and moderators of treatment outcomes in phase-based treatment and trauma-focused treatments in patients with childhood abuse-related post-traumatic stress disorder
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Noortje I. van Vliet, Rafaele J. C. Huntjens, Maarten K. van Dijk, Mark Huisman, Nathan Bachrach, Marie-Louise Meewisse, Sietske van Haren, and Ad de Jongh
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PTSD ,childhood abuse ,predictors ,moderators ,treatment ,TEPT ,Psychiatry ,RC435-571 - Abstract
ABSTRACTBackground: Knowledge of treatment predictors and moderators is important for improving the effectiveness of treatment for PTSD due to childhood abuse.Objective: The first aim of this study was to test the potential predictive value of variables commonly associated with PTSD resulting from a history of repeated childhood abuse, in relation to treatment outcomes. The second aim was to examine if complex PTSD symptoms act as potential moderators between treatment conditions and outcomes.Method: Data were obtained from a randomized controlled trial comparing a phase-based treatment (Skills Training in Affect and Interpersonal Regulation [STAIR] followed by Eye Movement Desensitization and Reprocessing [EMDR] therapy; n = 57) with a direct trauma-focused treatment (EMDR therapy only; n = 64) in people with PTSD due to childhood abuse. The possible predictive effects of the presence of borderline personality disorder, dissociative symptoms, and suicidal and self-injurious behaviours were examined. In addition, it was determined whether symptoms of emotion regulation difficulties, self-esteem, and interpersonal problems moderated the relation between the treatment condition and PTSD post-treatment, corrected for pre-treatment PTSD severity.Results: Pre-treatment PTSD severity proved to be a significant predictor of less profitable PTSD treatment outcomes. The same was true for the severity of dissociative symptoms, but only post-treatment, and not when corrected for false positives. Complex PTSD symptoms did not moderate the relationship between the treatment conditions and PTSD treatment outcomes.Conclusions: The current findings suggest that regardless of the common comorbid symptoms studied, immediate trauma-focused treatment is a safe and effective option for individuals with childhood-related PTSD. However, individuals experiencing severe symptoms of PTSD may benefit from additional treatment sessions or the addition of other evidence-based PTSD treatment approaches. The predictive influence of dissociative sequelae needs further research.The study design was registered in The Dutch trial register (https://www.trialregister.nl/trialreg/admin/rctview.asp?TC = 5991) NTR5991 and was approved by the medical ethics committee of Twente NL 56641.044.16 CCMO.
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- 2024
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100. Complexity in tame quantum theories
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Grimm, Thomas W., Schlechter, Lorenz, and van Vliet, Mick
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- 2024
- Full Text
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