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584 results on '"Yu, Jiyang"'

53. Network-based systems pharmacology reveals heterogeneity in LCK and BCL2 signaling and therapeutic sensitivity of T-cell acute lymphoblastic leukemia

Author

Gocho, Yoshihiro, Liu, Jingjing, Hu, Jianzhong, Yang, Wentao, Dharia, Neekesh V., Zhang, Jingliao, Shi, Hao, Du, Guoqing, John, August, Lin, Ting-Nien, Hunt, Jeremy, Huang, Xin, Ju, Bensheng, Rowland, Lauren, Shi, Lei, Maxwell, Dylan, Smart, Brandon, Crews, Kristine R., Yang, Wenjian, Hagiwara, Kohei, Zhang, Yingchi, Roberts, Kathryn, Wang, Hong, Jabbour, Elias, Stock, Wendy, Eisfelder, Bartholomew, Paietta, Elisabeth, Newman, Scott, Roti, Giovanni, Litzow, Mark, Easton, John, Zhang, Jinghui, Peng, Junmin, Chi, Hongbo, Pounds, Stanley, Relling, Mary V., Inaba, Hiroto, Zhu, Xiaofan, Kornblau, Steven, Pui, Ching-Hon, Konopleva, Marina, Teachey, David, Mullighan, Charles G., Stegmaier, Kimberly, Evans, William E., Yu, Jiyang, and Yang, Jun J.

Published
2021
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56. A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

Author

Patel, Anand G., primary, Ashenberg, Orr, additional, Collins, Natalie B., additional, Segerstolpe, Åsa, additional, Jiang, Sizun, additional, Slyper, Michal, additional, Huang, Xin, additional, Caraccio, Chiara, additional, Jin, Hongjian, additional, Sheppard, Heather, additional, Xu, Ke, additional, Chang, Ti-Cheng, additional, Orr, Brent A., additional, Shirinifard, Abbas, additional, Chapple, Richard H., additional, Shen, Amber, additional, Clay, Michael R., additional, Tatevossian, Ruth G., additional, Reilly, Colleen, additional, Patel, Jaimin, additional, Lupo, Marybeth, additional, Cline, Cynthia, additional, Dionne, Danielle, additional, Porter, Caroline B.M., additional, Waldman, Julia, additional, Bai, Yunhao, additional, Zhu, Bokai, additional, Barrera, Irving, additional, Murray, Evan, additional, Vigneau, Sébastien, additional, Napolitano, Sara, additional, Wakiro, Isaac, additional, Wu, Jingyi, additional, Grimaldi, Grace, additional, Dellostritto, Laura, additional, Helvie, Karla, additional, Rotem, Asaf, additional, Lako, Ana, additional, Cullen, Nicole, additional, Pfaff, Kathleen L., additional, Karlström, Åsa, additional, Jané-Valbuena, Judit, additional, Todres, Ellen, additional, Thorner, Aaron, additional, Geeleher, Paul, additional, Rodig, Scott J., additional, Zhou, Xin, additional, Stewart, Elizabeth, additional, Johnson, Bruce E., additional, Wu, Gang, additional, Chen, Fei, additional, Yu, Jiyang, additional, Goltsev, Yury, additional, Nolan, Garry P., additional, Rozenblatt-Rosen, Orit, additional, Regev, Aviv, additional, and Dyer, Michael A., additional

Published
2024
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61. Detection and Decoding for 2D Magnetic Recording Channels with 2D Intersymbol Interference

Author

Yu, Jiyang, Carosino, Michael, Sivakumar, Krishnamoorthy, Belzer, Benjamin J., and Chen, Yiming

Subjects
Computer Science - Information Theory
Abstract

This paper considers iterative detection and decoding on the concatenated communication channel consisting of a two-dimensional magnetic recording (TDMR) channel modeled by the four-grain rectangular discrete grain model (DGM) proposed by Kavcic et. al., followed by a two-dimensional intersymbol interference (2D-ISI) channel modeled by linear convolution of the DGM model's output with a finite-extent 2D blurring mask followed by addition of white Gaussian noise. An iterative detection and decoding scheme combines TDMR detection, 2D-ISI detection, and soft-in/soft-out (SISO) channel decoding in a structure with two iteration loops. In the first loop, the 2D-ISI channel detector exchanges log-likelihood ratios (LLRs) with the TDMR detector. In the second loop, the TDMR detector exchanges LLRs with a serially concatenated convolutional code (SCCC) decoder. Simulation results for the concatenated TDMR and 2 x 2 averaging mask ISI channel with 10 dB SNR show that densities of 0.48 user bits per grain and above can be achieved, corresponding to an areal density of about 9.6 Terabits per square inch, over the entire range of grain probabilities in the TDMR model., Comment: 8 pages, 11 figures, 1 table

Published
2014

63. Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL)

Author

Shaw, Timothy I., Dong, Li, Tian, Liqing, Qian, Chenxi, Liu, Yu, Ju, Bensheng, High, Anthony, Kavdia, Kanisha, Pagala, Vishwajeeth R., Shaner, Bridget, Pei, Deqing, Easton, John, Janke, Laura J., Porter, Shaina N., Ma, Xiaotu, Cheng, Cheng, Pruett-Miller, Shondra M., Choi, John, Yu, Jiyang, Peng, Junmin, Gu, Wei, Look, A. Thomas, Downing, James R., and Zhang, Jinghui

Published
2021
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64. Integrative genomic analyses reveal mechanisms of glucocorticoid resistance in acute lymphoblastic leukemia

Author

Autry, Robert J., Paugh, Steven W., Carter, Robert, Shi, Lei, Liu, Jingjing, Ferguson, Daniel C., Lau, Calvin E., Bonten, Erik J., Yang, Wenjian, McCorkle, J. Robert, Beard, Jordan A., Panetta, John C., Diedrich, Jonathan D., Crews, Kristine R., Pei, Deqing, Coke, Christopher J., Natarajan, Sivaraman, Khatamian, Alireza, Karol, Seth E., Lopez-Lopez, Elixabet, Diouf, Barthelemy, Smith, Colton, Gocho, Yoshihiro, Hagiwara, Kohei, Roberts, Kathryn G., Pounds, Stanley, Kornblau, Steven M., Stock, Wendy, Paietta, Elisabeth M., Litzow, Mark R., Inaba, Hiroto, Mullighan, Charles G., Jeha, Sima, Pui, Ching-Hon, Cheng, Cheng, Savic, Daniel, Yu, Jiyang, Gawad, Charles, Relling, Mary V., Yang, Jun J., and Evans, William E.

Published
2020
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66. Selfie Video Stabilization

Author

Yu, Jiyang, Ramamoorthi, Ravi, Hutchison, David, Series Editor, Kanade, Takeo, Series Editor, Kittler, Josef, Series Editor, Kleinberg, Jon M., Series Editor, Mattern, Friedemann, Series Editor, Mitchell, John C., Series Editor, Naor, Moni, Series Editor, Pandu Rangan, C., Series Editor, Steffen, Bernhard, Series Editor, Terzopoulos, Demetri, Series Editor, Tygar, Doug, Series Editor, Weikum, Gerhard, Series Editor, Ferrari, Vittorio, editor, Hebert, Martial, editor, Sminchisescu, Cristian, editor, and Weiss, Yair, editor

Published
2018
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79. Robust Selfie and General Video Stabilization

Author

Yu, Jiyang

Subjects
Electrical engineering, Computer science
Abstract

Video stabilization is one of the most widely sought features in video processing. The problem of video stabilization typically consists of two steps: video motion analysis and stabilized frame synthesis. Traditional video motion analysis relies heavily on local image features and is prone to error in the presence of occlusions and motion blur. It is also challenging to avoid visual artifacts in the stabilized frame synthesis due to complexity of the scenes, e.g. parallax, dynamic objects. In this dissertation, we focus on exploring video stabilization methods that generate high quality stable results and are generalizable to real world videos. We start from selfie videos, which is a special type of video that is challenging for all video stabilization methods due to the dynamic occlusion. Our solution is to analyze motion of the foreground/background separately and jointly stabilize the motion. Specifically, we seek to use 3D human face model as a prior information of foreground motion. For the background, our approach tracks random pixels using optical flow. We exploit non-linear least squares optimization to stablize both the foreground/background motion. To make the process practical for commercial applications, we also designed an online version of the pipeline using a sliding window scheme. We also exploit deep learning techniques to replace optimization, resulting in orders of magnitude speed improvement compared to the state-of-the-art optimization based approaches. Our works also generalize to the general video stabilization context. General video occlusion is free-form, therefore a more general scheme is required to appropriately constrain the video stabilization. We proposed two different solutions based on this principle. Both of our approaches use optical flow to analyze the motion and generate a dense warp field for stabilizing input frames. Our first approach seeks to constrain the frame warp field using a global linear transformation. In the second we designed specific metrics based on optical flow to exclude dynamic occlusions and motion boundaries. Our experiments show that our approach is more generalizable and produces both visually and quantatively better results compared to previous video stabilization methods.

Published
2020

82. Parallel accelerated computing architecture for dim target tracking on‐board.

Author

Yu, Jiyang, Huang, Dan, Li, Wenjie, Wang, Xianjie, and Shi, Xiaolong

Subjects
*PARALLEL programming, *COMPUTER logic, *KALMAN filtering, *REQUIREMENTS engineering, *ENGINEERING design, *ITERATIVE learning control
Abstract

The real‐time tracking process of dim targets in space is mainly achieved through the correlation and prediction of dots after the detection and calculation process. The on‐board calculation of the tracking needs to be completed in milliseconds, and it needs to reach the microsecond level at high frame rates. For real‐time tracking of dim targets in space, it is necessary to achieve universal tracking calculation acceleration in response to different space regions and complex backgrounds, which poses high requirements for engineering implementation architecture. This paper designs a Kalman filter calculation based on digital logic parallel acceleration architecture for real‐time solution of dim target tracking on‐board. A unified architecture of Vector Processing Element (VPE) was established for the calculation of Kalman filtering matrix, and an array computing structure based on VPE was designed to decompose the entire filtering process and form a parallel pipelined data stream. The prediction errors under different fixed point bit widths were analyzed and deduced, and the guidance methods for selecting the optimal bit width based on the statistical results were provided. The entire design was engineered based on Xilinx's XC7K325T, resulting in an energy efficiency improvement compared to previous designs. The single iteration calculation time does not exceed 0.7 microseconds, which can meet the current high frame rate target tracking requirements. The effectiveness of this design has been verified through simulation of random trajectory data, which is consistent with the theoretical calculation error. [ABSTRACT FROM AUTHOR]

Published
2024
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86. Targeting DNA polymerase β elicits synthetic lethality with mismatch repair deficiency in acute lymphoblastic leukemia

Author

Teng, Ji-Yuan, primary, Yang, Ding-Peng, additional, Tang, Chao, additional, Fang, Hou-Shun, additional, Sun, Hui-Ying, additional, Xiang, Yue-Ning, additional, Li, Xiao-Meng, additional, Yang, Fan, additional, Xia, Rui-Xue, additional, Fan, Fu, additional, Liu, Jingjing, additional, Yu, Jiyang, additional, Hu, Jin-Chuan, additional, Li, Ben-Shang, additional, Li, Hui, additional, Meng, Fei-Long, additional, Duan, Cai-Wen, additional, and Zhou, Bin-Bing S., additional

Published
2023
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87. Data from Combination of Ribociclib with BET-Bromodomain and PI3K/mTOR Inhibitors for Medulloblastoma Treatment In Vitro and In Vivo

Author

Jonchere, Barbara, primary, Williams, Justin, primary, Zindy, Frederique, primary, Liu, Jingjing, primary, Robinson, Sarah, primary, Farmer, Dana M., primary, Min, Jaeki, primary, Yang, Lei, primary, Stripay, Jennifer L., primary, Wang, Yingzhe, primary, Freeman, Burgess B., primary, Yu, Jiyang, primary, Shelat, Anang A., primary, Rankovic, Zoran, primary, and Roussel, Martine F., primary

Published
2023
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88. Supplementary Table S4 from SLFN11 is Widely Expressed in Pediatric Sarcoma and Induces Variable Sensitization to Replicative Stress Caused By DNA-Damaging Agents

Author

Gartrell, Jessica, primary, Mellado-Largarde, Marcia, primary, Clay, Michael R., primary, Bahrami, Armita, primary, Sahr, Natasha A., primary, Sykes, April, primary, Blankenship, Kaley, primary, Hoffmann, Lauren, primary, Xie, Jia, primary, Cho, Hyekyung P., primary, Twarog, Nathaniel, primary, Connelly, Michele, primary, Yan, Koon-Kiu, primary, Yu, Jiyang, primary, Porter, Shaina N., primary, Pruett-Miller, Shondra M., primary, Neale, Geoffrey, primary, Tinkle, Christopher L., primary, Federico, Sara M., primary, Stewart, Elizabeth A., primary, and Shelat, Anang A., primary

Published
2023
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89. Table S1 from Cross-Cohort Analysis Identifies a TEAD4–MYCN Positive Feedback Loop as the Core Regulatory Element of High-Risk Neuroblastoma

Author

Rajbhandari, Presha, primary, Lopez, Gonzalo, primary, Capdevila, Claudia, primary, Salvatori, Beatrice, primary, Yu, Jiyang, primary, Rodriguez-Barrueco, Ruth, primary, Martinez, Daniel, primary, Yarmarkovich, Mark, primary, Weichert-Leahey, Nina, primary, Abraham, Brian J., primary, Alvarez, Mariano J., primary, Iyer, Archana, primary, Harenza, Jo Lynne, primary, Oldridge, Derek, primary, De Preter, Katleen, primary, Koster, Jan, primary, Asgharzadeh, Shahab, primary, Seeger, Robert C., primary, Wei, Jun S., primary, Khan, Javed, primary, Vandesompele, Jo, primary, Mestdagh, Pieter, primary, Versteeg, Rogier, primary, Look, A. Thomas, primary, Young, Richard A., primary, Iavarone, Antonio, primary, Lasorella, Anna, primary, Silva, Jose M., primary, Maris, John M., primary, and Califano, Andrea, primary

Published
2023
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90. Data from Combination of Ribociclib and Gemcitabine for the Treatment of Medulloblastoma

Author

Pribnow, Allison, primary, Jonchere, Barbara, primary, Liu, Jingjing, primary, Smith, Kyle S., primary, Campagne, Olivia, primary, Xu, Ke, primary, Robinson, Sarah, primary, Patel, Yogesh, primary, Onar-Thomas, Arzu, primary, Wu, Gang, primary, Stewart, Clinton F., primary, Northcott, Paul A., primary, Yu, Jiyang, primary, Robinson, Giles W., primary, and Roussel, Martine F., primary

Published
2023
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91. Supplementary Table S2 from Combination of Ribociclib with BET-Bromodomain and PI3K/mTOR Inhibitors for Medulloblastoma Treatment In Vitro and In Vivo

Author

Jonchere, Barbara, primary, Williams, Justin, primary, Zindy, Frederique, primary, Liu, Jingjing, primary, Robinson, Sarah, primary, Farmer, Dana M., primary, Min, Jaeki, primary, Yang, Lei, primary, Stripay, Jennifer L., primary, Wang, Yingzhe, primary, Freeman, Burgess B., primary, Yu, Jiyang, primary, Shelat, Anang A., primary, Rankovic, Zoran, primary, and Roussel, Martine F., primary

Published
2023
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92. Supplementary Methods, Figures and Tables from Combination of Ribociclib with BET-Bromodomain and PI3K/mTOR Inhibitors for Medulloblastoma Treatment In Vitro and In Vivo

Author

Jonchere, Barbara, primary, Williams, Justin, primary, Zindy, Frederique, primary, Liu, Jingjing, primary, Robinson, Sarah, primary, Farmer, Dana M., primary, Min, Jaeki, primary, Yang, Lei, primary, Stripay, Jennifer L., primary, Wang, Yingzhe, primary, Freeman, Burgess B., primary, Yu, Jiyang, primary, Shelat, Anang A., primary, Rankovic, Zoran, primary, and Roussel, Martine F., primary

Published
2023
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93. Data from Cross-Cohort Analysis Identifies a TEAD4–MYCN Positive Feedback Loop as the Core Regulatory Element of High-Risk Neuroblastoma

Author

Rajbhandari, Presha, primary, Lopez, Gonzalo, primary, Capdevila, Claudia, primary, Salvatori, Beatrice, primary, Yu, Jiyang, primary, Rodriguez-Barrueco, Ruth, primary, Martinez, Daniel, primary, Yarmarkovich, Mark, primary, Weichert-Leahey, Nina, primary, Abraham, Brian J., primary, Alvarez, Mariano J., primary, Iyer, Archana, primary, Harenza, Jo Lynne, primary, Oldridge, Derek, primary, De Preter, Katleen, primary, Koster, Jan, primary, Asgharzadeh, Shahab, primary, Seeger, Robert C., primary, Wei, Jun S., primary, Khan, Javed, primary, Vandesompele, Jo, primary, Mestdagh, Pieter, primary, Versteeg, Rogier, primary, Look, A. Thomas, primary, Young, Richard A., primary, Iavarone, Antonio, primary, Lasorella, Anna, primary, Silva, Jose M., primary, Maris, John M., primary, and Califano, Andrea, primary

Published
2023
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94. Supplementary Data from Combination of Ribociclib and Gemcitabine for the Treatment of Medulloblastoma

Author

Pribnow, Allison, primary, Jonchere, Barbara, primary, Liu, Jingjing, primary, Smith, Kyle S., primary, Campagne, Olivia, primary, Xu, Ke, primary, Robinson, Sarah, primary, Patel, Yogesh, primary, Onar-Thomas, Arzu, primary, Wu, Gang, primary, Stewart, Clinton F., primary, Northcott, Paul A., primary, Yu, Jiyang, primary, Robinson, Giles W., primary, and Roussel, Martine F., primary

Published
2023
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95. Supplementary Figure from Combination of Ribociclib and Gemcitabine for the Treatment of Medulloblastoma

Author

Pribnow, Allison, primary, Jonchere, Barbara, primary, Liu, Jingjing, primary, Smith, Kyle S., primary, Campagne, Olivia, primary, Xu, Ke, primary, Robinson, Sarah, primary, Patel, Yogesh, primary, Onar-Thomas, Arzu, primary, Wu, Gang, primary, Stewart, Clinton F., primary, Northcott, Paul A., primary, Yu, Jiyang, primary, Robinson, Giles W., primary, and Roussel, Martine F., primary

Published
2023
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96. Supplementary Data from SLFN11 is Widely Expressed in Pediatric Sarcoma and Induces Variable Sensitization to Replicative Stress Caused By DNA-Damaging Agents

Author

Gartrell, Jessica, primary, Mellado-Largarde, Marcia, primary, Clay, Michael R., primary, Bahrami, Armita, primary, Sahr, Natasha A., primary, Sykes, April, primary, Blankenship, Kaley, primary, Hoffmann, Lauren, primary, Xie, Jia, primary, Cho, Hyekyung P., primary, Twarog, Nathaniel, primary, Connelly, Michele, primary, Yan, Koon-Kiu, primary, Yu, Jiyang, primary, Porter, Shaina N., primary, Pruett-Miller, Shondra M., primary, Neale, Geoffrey, primary, Tinkle, Christopher L., primary, Federico, Sara M., primary, Stewart, Elizabeth A., primary, and Shelat, Anang A., primary

Published
2023
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97. Supplementary Data from Cross-Cohort Analysis Identifies a TEAD4–MYCN Positive Feedback Loop as the Core Regulatory Element of High-Risk Neuroblastoma

Author

Rajbhandari, Presha, primary, Lopez, Gonzalo, primary, Capdevila, Claudia, primary, Salvatori, Beatrice, primary, Yu, Jiyang, primary, Rodriguez-Barrueco, Ruth, primary, Martinez, Daniel, primary, Yarmarkovich, Mark, primary, Weichert-Leahey, Nina, primary, Abraham, Brian J., primary, Alvarez, Mariano J., primary, Iyer, Archana, primary, Harenza, Jo Lynne, primary, Oldridge, Derek, primary, De Preter, Katleen, primary, Koster, Jan, primary, Asgharzadeh, Shahab, primary, Seeger, Robert C., primary, Wei, Jun S., primary, Khan, Javed, primary, Vandesompele, Jo, primary, Mestdagh, Pieter, primary, Versteeg, Rogier, primary, Look, A. Thomas, primary, Young, Richard A., primary, Iavarone, Antonio, primary, Lasorella, Anna, primary, Silva, Jose M., primary, Maris, John M., primary, and Califano, Andrea, primary

Published
2023
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