98 results on '"Yini Li"'
Search Results
52. Meiotic H3K9me2 distribution is influenced by the ALG-3 and ALG-4 pathway and by poly(U) polymerase activity
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Yini, Li, Matthew, Snyder, and Eleanor M, Maine
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New Finding ,Phenotype Data ,C. Elegans - Abstract
Histone modifications are precisely controlled within the developing germ line. During first meiotic prophase in C. elegans, H3K9me2 immunolabeling detects a relatively bright focus of signal on unsynapsed chromosomes and a relatively weak, diffuse signal on synapsed chromosomes (Bean et al. 2004, Kelly et al. 2002, Reuben and Lin 2002). The naturally occurring unsynapsed chromosome is the single male X. Examples of other chromatin that is enriched for H3K9me2 at pachytene stage include single-copy free chromosomal duplications, chromosomes that fail to pair due to certain mutations, and multicopy extrachromosomal arrays. In all cases, the enriched H3K9me2 signal decreases sharply as nuclei move into diplotene stage, and H3K9me2 is not detected in diakinesis nuclei. As the naturally occurring example of H3K9me2 enrichment, the male X is commonly used to evaluate this meiotic targeting phenomenon (Fig. 1). We previously showed that meiotic H3K9me2 distribution is altered in males lacking CSR-1 Argonaute or factors required for accumulation of CSR-1-associated 22G RNAs, including EGO-1 RdRP, DRH-3 helicase, and the Tudor domain protein, EKL-1 (Maine et al. 2005, She et al. 2009). In mutants lacking any of these factors, pachytene H3K9me2 signal intensity is reduced on unsynapsed chromosomes and, in all cases except ego-1(null) mutants, ectopic H3K9me2 foci are detected on synapsed chromosomes. Interestingly, as in wildtype, H3K9me2 signal is not detected in diakinesis nuclei in these mutants. CSR-1 pathway activity is essential for germ line development where it is thought to license the correct pattern of gene expression (Yigit et al. 2006, Ashe et al. 2012, Shirayama et al. 2012). EGO-1, DRH-3, and EKL-1 are critical for biogenesis and stability of 22G RNAs that associate with CSR-1 (reviewed in Billi et al. 2014).
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- 2021
53. Value of of ELMO1 gene methylation detection in early diagnosis of gastric cancer
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Fa-Bao Wang, Guobing Zhong, Dunjing Zhong, Guihong Yuan, Ping Li, Yini Li, Zhen Jia, Ronglin Zhang, and Jian Song
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business.industry ,ELMO1 Gene ,Cancer research ,Medicine ,Cancer ,Methylation ,business ,medicine.disease ,Value (mathematics) - Published
- 2019
54. Diversity and frequency of resistance and virulence genes in blaKPC and blaNDM co-producing Klebsiella pneumoniae strains from China
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Qiuni Shen, Yini Li, Penggao Dai, Kelei Zhao, Zhihao Nie, Xiyan Xu, Xin Liu, Jie Zhang, Yancheng He, Wenting Jiang, and Yingshun Zhou
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0301 basic medicine ,Pharmacology ,biology ,Klebsiella pneumoniae ,030106 microbiology ,High serum ,Virulence ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,biology.organism_classification ,Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Infectious Diseases ,chemistry ,polycyclic compounds ,Aerobactin ,Pharmacology (medical) ,030212 general & internal medicine ,Gene ,Clinical treatment - Abstract
Background Emergence of bla KPC and bla NDM co-producing Klebsiella pneumoniae strains have led to the limited therapeutic options for clinical treatment. Understanding the diversity and frequency of resistance and virulence genes of these isolates is of great significance. Purpose The aim of this study is to research the diversity and frequency of resistance and virulence genes in the bla KPC and bla NDM co-producing Klebsiella pneumoniae strains. Methods and results In this study, 117 K. pneumonia strains were isolated from China, and among of which, 24 were found to be bla KPC and bla NDM co-producing with significant resistance against almost all the commonly used antibiotics. Additionally, 4 strains were hypermucoviscous and 8 showed high serum resistance. Overall, bla SHV, bla CTX-M, tetA and sul1 resistance genes found in 100% of the isolates, followed by bla TEM (95.8%), oqxA/B (91.7%), qnrB (87.5%), aac(6')Ib-cr (83.3%), bla DHA (79.2%), rmtB (66.7%), qnrS (54.2%), cat(54.2%), floR (50.0%), sul2 (45.8%) cmlA (20.8%)andbla CMY (8.33%), respectively. What' more, seven bla CTX-M subtypes [bla CTX-M-14 (n=18), bla CTX-M-3(n=11), bla CTX-M-65 (n=4), bla CTX-M-15 (n=3), bla CTX-M-28 (n=2), bla CTX-M-55 (n=2), bla CTX-M-22 (n=1)] and six bla SHV subtypes [bla SHV-12(n=16), bla SHV-11 (n=4), bla SHV-2a(n=1), bla SHV-1(n=1), bla SHV-38(n=1) and bla SHV-28(n=1)] were detected. The frequency of virulence genes was as follows: 100% for entB, ybtS and irp, 95.8% for mrkD, 91.66% for fimH, 79.2% for iutA, 62.5% for iroBCDE, aerobactin and kfu, 66.7% for allS, 45.8% for wcaG, 37.5% for rmpA, 20.8% for pagO and 16.7% for magA. Conclusion From this study, we concluded that the bla KPC and bla NDM co-producing Klebsiella pneumoniae strains have a high diversity and frequency of resistance and virulence genes. This study may offer hospitals important information about the control of infections caused by bla KPC and bla NDM co-producing Klebsiella pneumoniae.
- Published
- 2019
55. The Circular RNA hsa_circ_000780 as a Potential Molecular Diagnostic Target for Gastric Cancer
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Ronglin Zhang, Guihong Yuan, Shuyong Yu, Dunjing Zhong, Jian Song, Ping Li, Yini Li, Guobing Zhong, Weizhong Yang, Zhen Jia, and Zhaowei Chen
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Atrophic gastritis ,Quantitative Reverse Transcriptase PCR ,QH426-470 ,hsa_circ_000780 ,Carcinoembryonic antigen ,Circular RNA ,Stomach Neoplasms ,Gene expression ,medicine ,Genetics ,Biomarkers, Tumor ,Humans ,Pathology, Molecular ,Internal medicine ,Genetics (clinical) ,Early Detection of Cancer ,biology ,Chemistry ,Cancer ,RNA, Circular ,medicine.disease ,Molecular biology ,RC31-1245 ,Real-time polymerase chain reaction ,biology.protein ,Gastritis ,medicine.symptom ,Gastric cancer ,Research Article - Abstract
Background The present study aimed to identify a specific circular RNA (circRNA) for early diagnosis of gastric cancer (GC). Methods Totally 82 patients with GC, 30 with chronic nonatrophic gastritis and 30 with chronic atrophic gastritis were included in this study. Four of the 82 GC patients were selected for screening. Total RNA from malignant and adjacent tissue samples was extracted, and circRNAs in four patients were screened. According to the screening results, the eight most upregulated and downregulated circRNAs with a statistically significant association with GC were identified by real-time fluorescent quantitative polymerase chain reaction (PCR). Then, the most regulated circRNA was selected for further sensitivity and specificity assessments. CircRNA expression was examined by quantitative reverse transcriptase PCR in 78 GC (21 and 57 early and advanced GC, respectively) and adjacent tissue samples, as well as in gastric fluid samples from 30 patients with chronic nonatrophic gastritis, 30 with chronic atrophic gastritis, and 78 GC. Results A total of 445 circRNAs, including 69 upregulated and 376 downregulated circRNAs, showed significantly altered expression in GC tissue samples. Hsa_circ_000780 was significantly downregulated in 80.77% of GC tissue samples, with levels in GC tissue samples correlating with tumor size, tumor stage, T stage, venous invasion, carcinoembryonic antigen amounts, and carbohydrate antigen 19–9 levels. Strikingly, this circRNA was found in the gastric fluid of patients with early and advanced GC. Conclusions The present study uncovered a new circRNA expression profile in human GC, with hsa_circ_000780 significantly downregulated in GC tissue and gastric fluid specimens. These findings indicate that hsa_circ_000780 should be considered a novel biomarker for early GC screening.
- Published
- 2021
56. m 6 A demethylase ALKBH5 is required for antibacterial innate defense by intrinsic motivation of neutrophil migration.
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Yang Liu, Renjie Song, Lu Zhao, Zhike Lu, Yini Li, Xinyi Zhan, Fengjiao Lu, Jiang Yang, Yamei Niu, and Xuetao Cao
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- 2022
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57. Enhanced luminescence through interface energy transfer in hierarchical heterogeneous nanocomposites and application in white LEDs
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Guoyang Gao, Peifen Zhu, Wenjing Yu, Weiping Qin, Dingsheng Wang, Guofeng Wang, and Yini Li
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Nanocomposite ,Materials science ,Nucleation ,Analytical chemistry ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,law.invention ,Nanoclusters ,Biomaterials ,symbols.namesake ,Colloid and Surface Chemistry ,law ,Excited state ,symbols ,0210 nano-technology ,Spectroscopy ,Raman spectroscopy ,Absorption (electromagnetic radiation) ,Light-emitting diode - Abstract
Highly efficient light-emitting materials are essential for achieving high-performance devices. Here, a novel composite system, as well as enhanced luminescence processes, was designed, where NaLn(MoO4)2 ultra-small nucleus can be effectively isolated by In(OH)3 to form NaLn(MoO4)2@In(OH)3 composite nanoclusters due to the different nucleation rate between NaLn(MoO4)2 and In(OH)3, and then these small composite clusters gradually self-assemble into hierarchical structures. As we expected, the enhanced luminescence was achieved from hierarchical NaLn(MoO4)2 nanostructures with adjusting the distance among NaLn(MoO4)2 ultra-small nucleus by inserting In(OH)3. A series of spectroscopy results show that the In(OH)3 not only acts as an energy transfer bridge from CTB Eu3+ → O2− (or MoO42− absorption) to Eu3+, but also can effectively alleviate the concentration quenching of Ln3+ and change the J-O parameters. The Raman peak at 134 cm−1 is helpful to populate the 5D0 level of Eu3+ or the excited states of Er3+, resulting in stronger up/down-conversion emissions. The use of NaLn(MoO4)2@In(OH)3 in white light-emitting diodes (LEDs) has been demonstrated. The combination of red emission from NaLn(MoO4)2@In(OH)3 with blue, green, and yellow emission from halide perovskites could achieve white light with excellent vision performance (an LER of 376 lm/W) and superior color quality (CRI > 92). The findings of this experiment provide a new idea for the design of composite interface materials.
- Published
- 2020
58. Circular RNA hsa_circ_000780 has been identified by genomic expression profile analysis as a potential diagnostic marker for gastric cancer
- Author
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Zhen Jia, Dunjing Zhong, Jian Song, Ping Li, Shuyong Yu, Yini Li, Guobing Zhong, Zhaowei Chen, Ronglin Zhang, Guihong Yuan, and Weizhong Yang
- Subjects
Circular RNA ,medicine ,Cancer ,Profile analysis ,Diagnostic marker ,Biology ,medicine.disease ,Molecular biology - Abstract
Background : The present study attempted to detect a specific circular RNA (circRNA) for the early diagnosis of gastric cancer (GC). Methods: We selected four patients with GC for this study. The total RNA of the malignant and adjacent tissues was extracted, and the circRNA was screened. The eight most upregulated and downregulated circRNAs with a statistically significant relation to GC and paired adjacent nontumorous tissues were identified using real-time fluorescent quantitative polymerase chain reaction (PCR). CircRNA expression was identified by quantitative reverse transcriptase PCR in 78 cases of GC and adjacent tissues, and in the gastric fluids of 30 patients with chronic nonatrophic gastritis, 30 patients with chronic atrophic gastritis, 21 with early GC, and 57 with advanced GC. Results: A total of 445 circRNAs, including 69 upregulated and 376 downregulated circRNAs, showed significant aberrant expression in GC tissues. A majority of the differentially expressed circRNAs originated from chr1, chr3, chr4, chr6, and chr11. Hsa_circ_000780 was significantly downregulated in 80.77% of GC tissues, and its level in GC tissues correlated with the tumor size, tumor stage, T stage, venous invasion, carcinoembryonic antigen, and carbohydrate antigen 19-9 expression. A crucial observation was the presence of this circRNA in the gastric fluid of patients with early and advanced GC. Conclusions: The present study uncovered a new hsa_circRNA expression profile in human GC, of which hsa_circ_000780 was significantly downregulated in GC tissues and in gastric fluid. It can be potentially used as a novel biomarker for early GC screening.
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- 2020
59. Programmed RNA scaffold for streamlined scRNA-seq in CRISPR screen
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Qingkai Song, Ni, Ke, Liu, Min, Yini Li, Lixia Wang, Yingying Wang, Yingzheng Liu, Zhenxing Yu, Yinyao Qi, Zhike Lu, and Lijia Ma
- Abstract
scCRISPR, {"references":["Qi, L. S. et al. Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152, 1173-1183, doi:10.1016/j.cell.2013.02.022 (2013).","Zetsche, B. et al. Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system. Cell 163, 759-771, doi:10.1016/j.cell.2015.09.038 (2015).","Abudayyeh, O. O. et al. C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector. Science 353, aaf5573, doi:10.1126/science.aaf5573 (2016).","Maeder, M. L. et al. CRISPR RNA-guided activation of endogenous human genes. Nat Methods 10, 977-979, doi:10.1038/nmeth.2598 (2013).","Perez-Pinera, P. et al. RNA-guided gene activation by CRISPR-Cas9-based transcription factors. Nat Methods 10, 973-976, doi:10.1038/nmeth.2600 (2013).","Thakore, P. I. et al. Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements. Nat Methods 12, 1143-1149, doi:10.1038/nmeth.3630 (2015).","Nishimasu, H. et al. Crystal structure of Cas9 in complex with guide RNA and target DNA. Cell 156, 935-949, doi:10.1016/j.cell.2014.02.001 (2014).","Konermann, S. et al. Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex. Nature 517, 583-588, doi:10.1038/nature14136 (2015).","Ma, H. et al. Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow. Nat Biotechnol 34, 528-530, doi:10.1038/nbt.3526 (2016).","Dixit, A. et al. Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens. Cell 167, 1853-1866 e1817, doi:10.1016/j.cell.2016.11.038 (2016).","Jaitin, D. A. et al. Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq. Cell 167, 1883-1896 e1815, doi:10.1016/j.cell.2016.11.039 (2016).","Datlinger, P. et al. Pooled CRISPR screening with single-cell transcriptome readout. Nat Methods 14, 297-301, doi:10.1038/nmeth.4177 (2017).","Adamson, B. et al. A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response. Cell 167, 1867-1882 e1821, doi:10.1016/j.cell.2016.11.048 (2016).","Replogle, J. M. et al. Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing. Nat Biotechnol, doi:10.1038/s41587-020-0470-y (2020).","Zalatan, J. G. et al. Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds. Cell 160, 339-350, doi:10.1016/j.cell.2014.11.052 (2015).","Dominguez, A. A., Lim, W. A. & Qi, L. S. Beyond editing: repurposing CRISPR-Cas9 for precision genome regulation and interrogation. Nat Rev Mol Cell Biol 17, 5-15, doi:10.1038/nrm.2015.2 (2016).","Brinkman, E. K., Chen, T., Amendola, M. & van Steensel, B. Easy quantitative assessment of genome editing by sequence trace decomposition. Nucleic Acids Res 42, e168, doi:10.1093/nar/gku936 (2014).","Shechner, D. M., Hacisuleyman, E., Younger, S. T. & Rinn, J. L. Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display. Nat Methods 12, 664-670, doi:10.1038/nmeth.3433 (2015).","Deo, R. C., Bonanno, J. B., Sonenberg, N. & Burley, S. K. Recognition of polyadenylate RNA by the poly(A)-binding protein. Cell 98, 835-845, doi:10.1016/s0092-8674(00)81517-2 (1999).","You, Y., Moreira, B. G., Behlke, M. A. & Owczarzy, R. Design of LNA probes that improve mismatch discrimination. Nucleic Acids Res 34, e60, doi:10.1093/nar/gkl175 (2006).","Lim, J. et al. Mixed tailing by TENT4A and TENT4B shields mRNA from rapid deadenylation. Science 361, 701-704, doi:10.1126/science.aam5794 (2018).","Fu, Y. et al. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 31, 822-826, doi:10.1038/nbt.2623 (2013).","Hill, A. J. et al. On the design of CRISPR-based single-cell molecular screens. Nat Methods 15, 271-274, doi:10.1038/nmeth.4604 (2018).","Mefferd, A. L., Kornepati, A. V., Bogerd, H. P., Kennedy, E. M. & Cullen, B. R. Expression of CRISPR/Cas single guide RNAs using small tRNA promoters. RNA 21, 1683-1689, doi:10.1261/rna.051631.115 (2015).","Xu, L., Zhao, L., Gao, Y., Xu, J. & Han, R. Empower multiplex cell and tissue-specific CRISPR-mediated gene manipulation with self-cleaving ribozymes and tRNA. Nucleic Acids Res 45, e28, doi:10.1093/nar/gkw1048 (2017).","Knapp, D. et al. Decoupling tRNA promoter and processing activities enables specific Pol-II Cas9 guide RNA expression. Nat Commun 10, 1490, doi:10.1038/s41467-019-09148-3 (2019).","Zhang, Y. et al. A gRNA-tRNA array for CRISPR-Cas9 based rapid multiplexed genome editing in Saccharomyces cerevisiae. Nat Commun 10, 1053, doi:10.1038/s41467-019-09005-3 (2019).","Xie, K., Minkenberg, B. & Yang, Y. Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system. Proc Natl Acad Sci U S A 112, 3570-3575, doi:10.1073/pnas.1420294112 (2015).","Chen, H. et al. Efficient, continuous mutagenesis in human cells using a pseudo-random DNA editor. Nat Biotechnol 38, 165-168, doi:10.1038/s41587-019-0331-8 (2020).","Nielsen, S., Yuzenkova, Y. & Zenkin, N. Mechanism of eukaryotic RNA polymerase III transcription termination. Science 340, 1577-1580, doi:10.1126/science.1237934 (2013)."]}
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- 2020
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60. Programmed RNA scaffold for streamlined scRNA-seq in CRISPR
- Author
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Qingkai Song, Ke Ni, Min Liu, Yini Li, Lixia Wang, Yingying Wang, Yingzheng Liu, Zhenxing Yu, Yinyao Qi, Zhike Lu, and Lijia Ma
- Subjects
natural sciences - Abstract
The CRISPR-based genome perturbation opened a new avenue to the genetic screen by providing a toolkit to conveniently change the DNA sequence, transcription and epigenetic modifications . However, it has remained challenging to assay the complex molecular readouts at high resolution and at scale after perturbation. By introducing an A/G mixed capture sequence into the gRNA scaffold, we demonstrated that the gRNA transcripts could be directly reverse transcribed by poly(dT) primer together with the endogenous mRNA, and followed by high-content molecular phenotyping in scRNA-seq. With this method, the CRISPR perturbation and its transcriptional readouts can be profiled together in a streamlined workflow.
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- 2020
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61. Genomic circular RNA expression profile analysis indicated hsa_circRNA_000780 as a diagnostic marker for gastric cancer
- Author
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Jian Song, Shuyong Yu, Dunjing Zhong, Weizhong Yang, Zhen Jia, Guihong Yuan, Ping Li, Ronglin Zhang, Yini Li, Guobing Zhong, and Zhaowei Chen
- Abstract
Background: This study aimed to find the specific circular RNA (circRNA) for gastric cancer (GC) and lay the foundation for the early diagnosis of GC.Methods: Four patients with GC were selected for this study. The total RNA of their cancer tissues and adjacent tissues was extracted, and the circRNA was screened. The top eight upregulated and downregulated circRNAs with statistical significance between GC and paired adjacent nontumorous tissues were identified using real-time fluorescent quantitative polymerase chain reaction (PCR). The expression level of circRNA was identified by quantitative reverse transcription PCR in 78 cases of GC and its adjacent tissues, and in the gastric juice of 30 patients with chronic nonatrophic gastritis, 30 with chronic atrophic gastritis, 21 with early GC, and 57 with advanced GC.Results: A total of 445 circRNAs, including 69 upregulated and 376 downregulated circRNAs, were found to be significantly aberrantly expressed in GC tissues. Most of the differentially expressed circRNAs originated from chr1, chr3, chr4, chr6, and chr11. Hsa_circRNA_000780 was significantly downregulated in 80.77% of GC tissues. Its level in GC tissues correlated with the tumor size, tumor stage, T stage, venous invasion, carcinoembryonic antigen, and carbohydrate antigen 19-9 expression. More importantly, hsa_circRNA_000780 was found in the gastric juice of early and advanced GC.Conclusions: This study uncovered the new hsa_circRNA expression profile in human GC. Among them, hsa_circRNA_000780 was significantly downregulated in GC tissues and gastric juice. It had the potential to be used as a novel biomarker for the screening of early GC.
- Published
- 2020
62. Dual-Mode Light-Emitting Lanthanide Metal-Organic Frameworks with High Water and Thermal Stability and Their Application in White LEDs
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Dan Wang, Guofeng Wang, Yajie Chen, Linna Xu, Peifen Zhu, Qingjiang Pan, Yini Li, Weiping Qin, and Sijia Li
- Subjects
Lanthanide ,Materials science ,business.industry ,Halide ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Fluorescence ,0104 chemical sciences ,law.invention ,Ion ,law ,Optoelectronics ,General Materials Science ,Thermal stability ,Emission spectrum ,0210 nano-technology ,business ,Luminescence ,Light-emitting diode - Abstract
It is well known that the upconversion luminescence from lanthanide metal-organic frameworks (Ln-MOFs) is difficult to achieve, and thus, there are few reports on dual luminescence-based MOFs. Here, dual-mode light-emitting Ln-MOFs are synthesized using a low-cost hydrothermal method. Our results show that the obtained Ln-MOFs not only have high thermal stability (up to 420°) but also are stable in deionized water. The dual-mode up- and downconversion luminescence is simultaneously observed from Er-Eu-MOFs. The temperature-dependent fluorescence decay time is calculated to be ranging from 0.46 to 0.36 ms for temperatures from 100 to 300 K. We suggested that this phenomenon was because the number of phonons participating in the MOF matrix increases with temperature during the luminescence process, and the phonons interact with the electrons in the material. The values of the J-O parameters calculated from the emission spectra indicated that the symmetry around Eu3+ ions in Eu-MOF is the highest, which was also higher than that of Er-Eu-MOF. To explore the potential applications of Eu-MOFs in white light-emitting diodes (LEDs), red emission from Eu-MOFs was combined with blue, green, and yellow emissions from metal halide perovskites to achieve white light emission. White light with excellent color quality and vision performance was obtained. These findings demonstrate that Ln-MOFs are potentially successful materials for applications in white LEDs.
- Published
- 2020
63. Additional file 6 of Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen
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Qingkai Song, Ni, Ke, Liu, Min, Yini Li, Lixia Wang, Yingying Wang, Yingzheng Liu, Zhenxing Yu, Yinyao Qi, Zhike Lu, and Ma, Lijia
- Abstract
Additional file 6. Review history.
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- 2020
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64. Additional file 1 of Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen
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Qingkai Song, Ni, Ke, Liu, Min, Yini Li, Lixia Wang, Yingying Wang, Yingzheng Liu, Zhenxing Yu, Yinyao Qi, Zhike Lu, and Ma, Lijia
- Abstract
Additional file 1: Figure S1. An illustration shows the stem extension when incorporating longer loop in order to main stable secondary structure. Figure S2. The off-target rate was examined for six known off-targeting sites of the VEGFA gRNA. Figure S3. Workflows of applying the programmed scaffold in different single cell RNA-seq platforms. Figure S4. The products from gRNA transcripts were effectively enriched by the nested PCR as exhibited from the fragment size analysis. Figure S5. The pearson correlation of UMI per cell between the two index gRNA libraries. Figure S6. Histogram of the gRNA UMI per cell from the index gRNA library II. Figure S7. Transcriptome profiling and KEGG enrichment of gRNA targeting genes in single cell sequencing. Figure S8. The sequencing reads from gRNA transcripts in each single cell were estimated using single cell RNA-seq conducted on the Fluidigm C1 platform. Figure S9. Different scaffold variants were examined, including G addition at different frequencies and A/G mixed sequence with different tractors.
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- 2020
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65. Simultaneous Synthesis, Modification, and DFT Calculation of Three‐Color Lead Halide Perovskite Phosphors for Improving Stability and Luminous Efficiency of WLEDs
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Weiping Qin, Peifen Zhu, Wanying Zhang, Yao Sun, Yini Li, Hongyang Zhu, and Guofeng Wang
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Lead (geology) ,Materials science ,Chemical engineering ,Halide ,Phosphor ,Thermal stability ,Luminous efficacy ,Stability (probability) ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,Perovskite (structure) - Published
- 2021
66. Europium single atom based heterojunction photocatalysts with enhanced visible-light catalytic activity.
- Author
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Yini li, Qu, Yang, and Wang, Guofeng
- Abstract
Promoting charge separation is still the main challenge in the rational design of photocatalysts for visible light photocatalytic reduction of CO
2 . Based on the unique advantages of the Eu3+ single atom and the Type-II heterojunction in the field of photocatalytic reduction, a Eu3+ single atom doped CdS/InVO4 Type-II heterojunction was successfully constructed through the combination of hydrothermal and in situ synthesis. The prepared CdS/InVO4 :Eu3+ single atom composite material has excellent photocatalytic CO2 reduction activity under visible light. The XPS test results show that the In 3d, O 1s, V 2p, and Eu 3d peaks of 10-CdS/IVO:Eu3+ move slightly towards a low energy direction, while, the positions of Cd 3d and S 2p peaks are both shifted to the direction of high binding energies, which indicated that the electrons can be transferred from CdS to IVO with the help of Eu3+ . The CO yield of CdS/InVO4 :Eu3+ was 11.02 μmol g−1 h−1 , which was almost 2.4 times that of pure InVO4 and 1.9 times that of pure CdS, and the yield of CH4 of CdS/InVO4 :Eu3+ reached 8.24 μmol g−1 h−1 , which was 5.3 times and 10.6 times that of InVO4 and CdS, respectively. Both the theoretical and experimental results show that the single atom Eu3+ can not only modify InVO4 and activate CO2 molecules, but can also promote charge separation between the interface and improve the photocatalytic performance. It is expected that the research results of this paper can provide a novel idea for the rational design of rare earth monatomic catalysts. [ABSTRACT FROM AUTHOR]- Published
- 2022
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67. Comparison of bioleaching and dissolution process of p-type and n-type chalcopyrite
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Qiu Xiao, Guanzhou Qiu, Rui Liao, Yini Li, Hongbo Zhao, Wenqing Qin, Yuming Xiong, Xiaotao Huang, Jun Wang, and Xingxing Wang
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Hydrometallurgy ,Chemistry ,Chalcopyrite ,Mechanical Engineering ,Metallurgy ,02 engineering and technology ,General Chemistry ,021001 nanoscience & nanotechnology ,Geotechnical Engineering and Engineering Geology ,Redox ,020501 mining & metallurgy ,0205 materials engineering ,Copper extraction techniques ,X-ray photoelectron spectroscopy ,Control and Systems Engineering ,Bioleaching ,visual_art ,visual_art.visual_art_medium ,Leaching (metallurgy) ,0210 nano-technology ,Dissolution ,Nuclear chemistry - Abstract
In this work, bioleaching and dissolution processes of chalcopyrite from three different regions were investigated and compared mainly by leaching experiments, scanning electron microscopy (SEM), X-ray photoelectron spectroscopy (XPS) and electrochemical analysis. Hall effect experiments showed that one (chalcopyrite A) belonged to p-type chalcopyrite whose carrier concentrations were high, while the other two (chalcopyrite B and C) were both n-type chalcopyrite whose carrier concentrations were low. A remarkably higher copper extraction of p-type chalcopyrite could be achieved during bioleaching by L. ferriphilum compared with n-type chalcopyrite. Redox potential in bioleaching of p-type chalcopyrite can be maintained at the appropriate range (about 380–480 mV vs. Ag/AgCl) for a longer period of time. Acid consumption in bioleaching of p-type chalcopyrite was significantly lower than that of n-type chalcopyrite. SEM analysis indicated that p-type chalcopyrite was more easily corroded by microorganism than n-type chalcopyrite. XPS analysis revealed that monosulfide (S2−), disulfide (S22−), polysulfide (Sn2−) and sulfate (SO42−) were the main intermediate species during bioleaching of both p-type and n-type chalcopyrite. Electrochemical analysis showed that the electrochemical dissolution processes of p-type and n-type chalcopyrite were similar, while the conductivity and oxidation-reduction rate of p-type chalcopyrite was significantly higher than those of n-type chalcopyrite, thus resulting in significant higher electrochemical dissolution kinetics and copper extraction. This work is potentially useful in explaining the inconsistences in chalcopyrite hydrometallurgy.
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- 2017
68. Morphological and genetic differences in legs of a polygamous beetle between sexes, Glenea cantor (Coleopter: Cerambycidae: Lamiinae).
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Jun Yan, Ping Luo, Yao Wu, Guandi Peng, Yini Liu, Chengrong Song, Wen Lu, Hongning Liu, and Zishu Dong
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Medicine ,Science - Abstract
The legs of insects play an important role in their daily behaviour, especially reproduction. Entomologists have performed much research on the role of the leg in different behaviours of beetles, an important group in the insect family, but relatively little has been done to study the ultrastructure and transcriptome of their legs. Hence, we systematically studied the ultrastructure and gene expression of the leg of G. cantor, a polygynous beetle, and compared its male and female diversity. In this study, we found the fore-leg, mid-leg and hind-leg of the female were significantly longer than those of the male. From the perspective of intuitive structural differences, we also compared the ultrastructures of the adhesion structure (tarsal) of males and females. The tarsal functional structure of the adult leg mainly includes sensilla and an adhesion structure. The sensilla on the tarsal joint mainly include sensilla chaetica (SCh II, SCh III) and sensilla trichodea (ST II). The adhesion structure includes disc-shaped bristles (di), lanceolate bristles (la), serrated bristles (se), spatula-shaped bristles (spl) and mushroom-shaped bristles (mus). Although there was no significant difference in sensillum distribution or type between males and females, there were significant differences in the distribution and species of adhesion structures between the fore-leg, mid-leg, and hind-leg of the same sex and between males and females. Therefore, different adhesion structures play different roles in various behaviours of beetles. On the other hand, the transcriptome results of male and female legs were screened for a subset of olfaction- and mechanics-related genes. We discovered that the male leg showed upregulation of 1 odorant binding protein (OBP), 2 Olfactory receptors (ORs) and 2 Chemosensory proteins (CSPs). Meanwhile, the female leg showed upregulation of 3 OBPs, 1 OR, 1 Gustatory receptor (GR) and 3 Mechanosensitive proteins (MSPs). An in-depth examination of the ultrastructure and molecular composition of the legs can elucidate its function in the reproductive behavior of G. cantor. Moremore, this investigation will serve as a cornerstone for subsequent research into the underlying behavioral mechanisms.
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- 2024
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69. Epithelium-on corneal collagen crosslinking for management of advanced keratoconus
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Jason C. K. Chan, Qinmei Wang, Vishal Jhanji, Jia Zhang, Shihao Chen, Tommy C Y Chan, Marco Yu, Yini Li, and Ping Ding
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Keratoconus ,medicine.medical_specialty ,genetic structures ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Interquartile range ,law ,Ophthalmology ,medicine ,Effective treatment ,Prospective cohort study ,Dioptre ,medicine.diagnostic_test ,Keratometer ,business.industry ,medicine.disease ,Corneal topography ,eye diseases ,Sensory Systems ,Surgery ,Correlation analysis ,030221 ophthalmology & optometry ,sense organs ,business ,030217 neurology & neurosurgery - Abstract
Purpose To report the 1-year visual and keratometric results of epithelium-on corneal collagen crosslinking (CXL) for advanced keratoconus (median maximum keratometry [K] ≥58.0 diopters [D]). Setting School of Ophthalmology and Optometry and Eye Hospital of Wenzhou Medical College, Wenzhou, China. Design Prospective case series. Methods Patients with bilateral progressive keratoconus had tetracaine-enhanced epithelium-on CXL. The worse eye had CXL, and the fellow eye was not treated. Results were reported 1, 3, 6, and 12 months postoperatively. The outcomes were compared with those in the fellow untreated eyes. Results Twenty-one eyes of 21 patients with a median age of 20.4 years (interquartile range [IQR], 9.5 years) were treated. A significant improvement in postoperative uncorrected distance visual acuity was observed at 12 months ( P = .002). Postoperative corrected distance visual acuity improved at 6 months and 12 months ( P ≤ .009) compared with baseline values. The maximum K decreased by 1.63 D from the median preoperative maximum K of 62.7 D (IQR, 12.9 D) at 12 months ( P P = .001). Correlation analysis between the preoperative maximum K values and the change over 6 to 12 months between different studies showed a significant correlation ( r = −0.764, P Conclusions Epithelium-on CXL was an effective treatment for patients with advanced keratoconus. A higher preoperative maximum K value correlated with greater corneal flattening after CXL. Financial Disclosure None of the authors has a financial or proprietary interest in any material or method mentioned.
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- 2016
70. Structural and functional characteristics of the fecal-associated microbiome in dampness-heat constitution
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Lu Zhao, Guangrui Huang, Pengfei Zhao, Jianhua Zhen, Anlong Xu, and Yini Li
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Genetics ,Alpha (ethology) ,Lipid metabolism ,Biology ,030205 complementary & alternative medicine ,03 medical and health sciences ,Metabolic pathway ,0302 clinical medicine ,Complementary and alternative medicine ,Potential biomarkers ,Clinical diagnosis ,030212 general & internal medicine ,Microbiome ,Relative species abundance ,Feces - Abstract
Introduction Susceptibility to lipid metabolic dysfunction are more frequent in individuals with dampness-heat (DH) constitution, which might be caused by the changes in the gut microbiome. This study is to explore the structural and functional characteristics of the fecal-associated microbiome (FAM) in DH constitution and screen FAM-related biomarkers of DH constitution. Methods Fecal samples were collected. The FAM structure was described with alpha/beta diversity indexes and relative abundances of dominant taxa; the distribution/functional differences of the FAM between DH and balanced constitutions were analyzed by Wilcoxon rank-sum test, MetagenomeSeq and LEfSe analysis, and the specific OTUs were screened to construct ROC curve. Results There was a significant difference between the groups in the sweet preference, ACE and Chao1 indexes. In PCoA and PLS-DA, the bacterial communities in the balanced samples and DH samples clustered separately. Notably, there were 115 differentially distributed OTUs between groups identified in the MetagenomeSeq analysis and 213 OTUs identified with the Wilcoxon rank-sum test. Predicted functions showed that 12 metabolic pathways were differentially distributed between groups, including the pathway related to glycerolipid metabolism. The AUC of ROC curve based on the 4 screened specific OTUs was 0.91, and the relative abundance of these 4 OTUs could result in changes in lipid metabolism. Conclusion Unique FAM structural characteristics were identified in DH constitution, which might involve in changes in lipid metabolism and susceptibility to lipid metabolic dysfunction. The 4 screened specific OTUs could be used as potential biomarkers of DH constitution to assist clinical diagnosis.
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- 2020
71. The balance of poly(U) polymerase activity ensures germline identity, survival and development in Caenorhabditis elegans
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Yini Li and Eleanor M. Maine
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0301 basic medicine ,Male ,Embryo, Nonmammalian ,Cell ,Green Fluorescent Proteins ,Embryonic Development ,Models, Biological ,Germline ,03 medical and health sciences ,Genes, Reporter ,Gene expression ,medicine ,Animals ,Caenorhabditis elegans ,Caenorhabditis elegans Proteins ,Molecular Biology ,Polymerase ,Neurons ,biology ,Gene Expression Regulation, Developmental ,DNA-Directed RNA Polymerases ,biology.organism_classification ,Phenotype ,Spermatozoa ,Survival Analysis ,In vitro ,Cell biology ,Up-Regulation ,030104 developmental biology ,medicine.anatomical_structure ,Germ Cells ,Fertilization ,Mutation ,biology.protein ,Female ,Function (biology) ,Developmental Biology ,Research Article - Abstract
Poly(U) polymerases (PUPs) catalyze 3′ uridylation of mRNAs and small RNAs, a modification often correlating with decreased RNA stability. We have investigated the importance of three proteins with in vitro PUP activity, PUP-1/CDE-1, PUP-2 and PUP-3, in C. elegans germline development. Genetic analysis indicates that PUP-1/CDE-1 and PUP-2 are developmentally redundant under conditions of temperature stress during which they ensure germline viability and development. Multiple lines of evidence indicate that pup-1/-2 double mutant germ cells fail to maintain their identity as distinct from soma. Consistent with phenotypic data, PUP-1 and PUP-2 are expressed in embryonic germ cell precursors and throughout germline development. The developmental importance of PUP activity is presumably in regulating gene expression as both a direct and indirect consequence of modifying target RNAs. PUP-3 is significantly overexpressed in the pup-1/-2 germline, and loss of pup-3 function partially suppresses pup-1/-2 germline defects. We conclude that one major function of PUP-1/-2 is to limit PUP-3 expression. Overall, the balance of PUP-1, PUP-2 and PUP-3 activities appears to ensure proper germline development.
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- 2018
72. Atomic structure of the apoptosome: mechanism of cytochrome c- and dATP-mediated activation of Apaf-1
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Xiao Chen Bai, Mengying Zhou, Weiyun Huang, Chuangye Yan, Yini Li, Sjors H.W. Scheres, Yigong Shi, and Qi Hu
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Models, Molecular ,Cytochrome ,DATP binding ,Cell Line ,Adenosine Triphosphate ,Apoptosomes ,Genetics ,Animals ,Humans ,APAF1 ,Caspase-9 ,biology ,Cytochrome c ,Cryoelectron Microscopy ,Intrinsic apoptosis ,Cytochromes c ,Caspase 9 ,Protein Structure, Tertiary ,Cell biology ,Enzyme Activation ,Apoptotic Protease-Activating Factor 1 ,Apoptosis ,Mutation ,biology.protein ,Apoptosome ,Research Paper ,Protein Binding ,Developmental Biology - Abstract
The apoptotic protease-activating factor 1 (Apaf-1) controls the onset of many known forms of intrinsic apoptosis in mammals. Apaf-1 exists in normal cells as an autoinhibited monomer. Upon binding to cytochrome c and dATP, Apaf-1 oligomerizes into a heptameric complex known as the apoptosome, which recruits and activates cell-killing caspases. Here we present an atomic structure of an intact mammalian apoptosome at 3.8 Å resolution, determined by single-particle, cryo-electron microscopy (cryo-EM). Structural analysis, together with structure-guided biochemical characterization, uncovered how cytochrome c releases the autoinhibition of Apaf-1 through specific interactions with the WD40 repeats. Structural comparison with autoinhibited Apaf-1 revealed how dATP binding triggers a set of conformational changes that results in the formation of the apoptosome. Together, these results constitute the molecular mechanism of cytochrome c- and dATP-mediated activation of Apaf-1.
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- 2015
73. Enrichment of H3K9me2 on Unsynapsed Chromatin inCaenorhabditis elegansDoes Not Targetde NovoSites
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Yiqing Guo, Yini Li, Xia Xu, Bing Yang, and Eleanor M. Maine
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germ cells ,X Chromosome ,Cell Cycle Proteins ,Investigations ,Methylation ,Germline ,Histones ,Histone H3 ,Prophase ,Genetics ,Animals ,histone modification ,Caenorhabditis elegans ,Caenorhabditis elegans Proteins ,Gonads ,Molecular Biology ,Alleles ,Genetics (clinical) ,X chromosome ,biology ,Synapsis ,biology.organism_classification ,Chromatin ,Meiosis ,Histone ,MET-2 ,Gene Expression Regulation ,Mutation ,biology.protein ,gene regulation ,Transcriptome - Abstract
Many organisms alter the chromatin state of unsynapsed chromosomes during meiotic prophase, a phenomenon hypothesized to function in maintaining germline integrity. In Caenorhabditis elegans, histone H3 lysine 9 dimethylation (H3K9me2) is detected by immunolabeling as enriched on unsynapsed meiotic chromosomes. Loss of the SET domain protein, MET-2, greatly reduces H3K9me2 abundance and results in germline mortality. Here, we used him-8 mutations to disable X chromosome synapsis and performed a combination of molecular assays to map the sites of H3K9me2 accumulation, evaluate H3K9me2 abundance in germline vs. whole animals, and evaluate the impact of H3K9me2 loss on the germline transcriptome. Our data indicate that H3K9me2 is elevated broadly across the X chromosome and at defined X chromosomal sites in him-8 adults compared with controls. H3K9me2 levels are also elevated to a lesser degree at sites on synapsed chromosomes in him-8 adults compared with controls. These results suggest that MET-2 activity is elevated in him-8 mutants generally as well as targeted preferentially to the unsynapsed X. Abundance of H3K9me2 and other histone H3 modifications is low in germline chromatin compared with whole animals, which may facilitate genome reprogramming during gametogenesis. Loss of H3K9me2 has a subtle impact on the him-8 germline transcriptome, suggesting H3K9me2 may not be a major regulator of developmental gene expression in C. elegans. We hypothesize H3K9me2 may have a structural function critical for germline immortality, and a greater abundance of these marks may be required when a chromosome does not synapse.
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- 2015
74. Mechanistic insights into caspase-9 activation by the structure of the apoptosome holoenzyme
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Qi Hu, Yigong Shi, Xiao Chen Bai, Mengying Zhou, Yini Li, Sjors H.W. Scheres, and Weiyun Huang
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0301 basic medicine ,Models, Molecular ,Apoptosis ,Bioinformatics ,Inhibitory CARD ,03 medical and health sciences ,Protein Domains ,Apoptosomes ,Humans ,Caspase ,Caspase-9 ,Multidisciplinary ,030102 biochemistry & molecular biology ,biology ,Chemistry ,Effector Caspases ,Intrinsic apoptosis ,Cryoelectron Microscopy ,Biological Sciences ,Caspase 9 ,Cell biology ,Enzyme Activation ,030104 developmental biology ,Cell killing ,Apoptotic Protease-Activating Factor 1 ,Caspase Activation and Recruitment Domain ,Mutation ,biology.protein ,Apoptosome ,Protein Multimerization ,Holoenzymes ,Protein Binding - Abstract
Mammalian intrinsic apoptosis requires activation of the initiator caspase-9, which then cleaves and activates the effector caspases to execute cell killing. The heptameric Apaf-1 apoptosome is indispensable for caspase-9 activation by together forming a holoenzyme. The molecular mechanism of caspase-9 activation remains largely enigmatic. Here, we report the cryoelectron microscopy (cryo-EM) structure of an apoptotic holoenzyme and structure-guided biochemical analyses. The caspase recruitment domains (CARDs) of Apaf-1 and caspase-9 assemble in two different ways: a 4:4 complex docks onto the central hub of the apoptosome, and a 2:1 complex binds the periphery of the central hub. The interface between the CARD complex and the central hub is required for caspase-9 activation within the holoenzyme. Unexpectedly, the CARD of free caspase-9 strongly inhibits its proteolytic activity. These structural and biochemical findings demonstrate that the apoptosome activates caspase-9 at least in part through sequestration of the inhibitory CARD domain.
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- 2017
75. Crystal structure of a bacterial homologue of SWEET transporters
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Masaki Yamamoto, Qi Hu, Nieng Yan, Kunio Hirata, Chuangye Yan, Yini Li, and Jing Wang
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Models, Molecular ,biology ,Bacteria ,Membrane transport protein ,Protein Conformation ,Membrane Transport Proteins ,Transporter ,Cell Biology ,Crystal structure ,biology.organism_classification ,Bioinformatics ,Crystallography, X-Ray ,Bacterial protein ,Protein structure ,Biochemistry ,Bacterial Proteins ,Jing wang ,biology.protein ,Molecular Biology ,Letter to the Editor - Published
- 2014
76. Types, structural evolution difference and petroleum geological significance of Cambrian–Ordovician carbonate platforms in Gucheng–Xiaotang area, Tarim Basin, NW China
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Yini LIU, Mingyi HU, and San ZHANG
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carbonate ramp ,rimmed platform ,platform margin structure ,differential evolution of carbonate platform ,Cambrian ,Ordovician ,Petroleum refining. Petroleum products ,TP690-692.5 - Abstract
Based on the latest drilling cores, thin sections, and 3D seismic data, types, features, and evolution processes of Cambrian–Ordovician carbonate platforms in the Gucheng and Xiaotang areas are studied, and favorable exploration zones in this area are also discussed. There are two types of carbonate platforms developed in the Cambrian–Ordovician in the Gucheng–Xiaotang area, namely, carbonate ramp and rimmed platforms, and the evolution process of the platform in the Gucheng area is different from that in Xiaotang area. In the Early Cambrian, the study area was a homoclinal carbonate ramp. During the Middle to Late Cambrian, it evolved into a rimmed platform, with 5 phases of mound shoals developed. In the southern area, mound shoals were in progradational arrangement and the third and fourth stages of mound shoals suffering exposure and further developed abundant karst vugs. In the northern area, the mound shoals appeared in a superposition of aggradation–weak progradation, the third, fourth, and fifth stages of mound shoals suffered exposure and dissolution, and the platform slope developed gravity flow deposits. In the Early to Middle Ordovician, the southern area gradually evolved into a distally steepened carbonate ramp, where retrogradational dolomitic shoal developed; while the northern part experienced an evolution process from a weakly rimmed platform to a distally steepened carbonate ramp, and developed two or three stages of retrogradational mound shoals. The high-frequency oscillation of sea level and local exposure and dissolution were beneficial to the formation of mound or shoal reservoirs in platform margin and ramp, and the configuration of these reservoirs with low energy slope–basin facies source rocks could form good oil-gas enrichment zones. The dolomitic shoal in the Ordovician platform ramp is the practical exploration field for increasing reserve and production in the Gucheng area. The mound shoal at the Cambrian rimmed platform margin is the key exploration object in the Xiaotang area. In addition, the Cambrian slope gravity flow deposits can be taken as the favorable exploration fields in the study area.
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- 2022
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77. Reply
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Shihao Chen, Tommy C.Y. Chan, Jia Zhang, Ping Ding, Jason C.K. Chan, Marco C.Y. Yu, Yini Li, Vishal Jhanji, and Qinmei Wang
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Ophthalmology ,Surgery ,Sensory Systems - Published
- 2016
78. Comparison of anterior segment measurements with rotating Scheimpflug photography and partial coherence reflectometry
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Xiaoyu Wang, Jinhai Huang, Daizong Wen, Shihao Chen, Yini Li, Konrad Pesudovs, Thomas A. Wright, and Qinmei Wang
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Adult ,Male ,medicine.medical_specialty ,Biometry ,Adolescent ,Rotation ,Anterior Chamber ,Scheimpflug principle ,Cornea ,Young Adult ,Optics ,Ophthalmology ,Lens, Crystalline ,Photography ,medicine ,Humans ,Reflectometry ,Physics ,business.industry ,Sensory Systems ,Female ,Surgery ,business ,Partial coherence - Abstract
To compare central corneal thickness (CCT), anterior chamber depth (ACD), and keratometry (K) readings measured using optical low-coherence reflectometry (OLCR) biometry and high-resolution rotating Scheimpflug photography.Eye Hospital of Wenzhou Medical College, Wenzhou, China.Comparative case series.The CCT, ACD endothelium to lens, ACD epithelium to lens, and K (mean; in flattest meridian; in steepest meridian) were measured 5 times using the LenStar/Biograph OLCR biometer and 3 times with the Pentacam Scheimpflug system in eyes of healthy volunteers. Concordance was evaluated using paired t tests, the Pearson correlation, and Bland-Altman analyses.The CCT, ACD endothelium to lens, and ACD epithelium to lens measured with the Scheimpflug system were slightly, albeit significantly, higher than with the OLCR biometer (P.05); the respective 95% limits of agreement (LoA) were -8.2 μm to 15.7 μm, -0.11 to 0.15 mm, and -0.13 to 0.17 mm. However, the Scheimpflug system gave significantly flatter readings for K in the flattest meridian (95% LoA, -0.54 to 0.32 diopters [D]), K in the steepest meridian (95% LoA, -0.63 to 0.45 D), and mean K (95% LoA, -0.53 to 0.33 D) (P.001). The CCT, ACD, and K readings were all highly correlated between the 2 devices (r0.95, P.001).The CCT and ACD measurements with the OLCR biometer and Scheimpflug system can be used interchangeably in healthy young subjects. However, for K measurements, these devices have wide LoA so may not be interchangeable under certain clinical circumstances.
- Published
- 2011
79. Effects of pyrite and bornite on bioleaching of two different types of chalcopyrite in the presence of Leptospirillum ferriphilum
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Xihua Zheng, Lang Tao, Jun Wang, Guanzhou Qiu, Yini Li, Minghao Hu, Hongbo Zhao, Xiaowen Gan, and Wenqing Qin
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Environmental Engineering ,Leptospirillum ferriphilum ,Iron ,Inorganic chemistry ,Bioengineering ,engineering.material ,Sulfides ,Redox ,Bioleaching ,Bornite ,Ferrous Compounds ,Waste Management and Disposal ,Dissolution ,biology ,Hydrometallurgy ,Bacteria ,Renewable Energy, Sustainability and the Environment ,Chemistry ,Chalcopyrite ,General Medicine ,biology.organism_classification ,visual_art ,Metallurgy ,visual_art.visual_art_medium ,engineering ,Pyrite ,Oxidation-Reduction ,Copper - Abstract
The effects of pyrite and bornite on bioleaching of two different chalcopyrite samples by Leptospirillum ferriphilum were studied for the first time. Results showed that bioleaching behaviors of the two chalcopyrite samples were extremely different. Bornite decreased the redox potential (ORP) and maintained it at an appropriate range (380-480 mV vs. Ag/AgCl) to promote chalcopyrite (A) dissolution, but caused the redox potential out of the optimum range and inhibited chalcopyrite (B) dissolution. Large amount of pyrite decreased the redox potential and maintained it at an optimum range to promote chalcopyrite (A) dissolution, while increased the redox potential and kept it at appropriate range for a longer period of time to enhance the dissolution rate of chalcopyrite (B). Chalcopyrite (B) had significantly higher values of conductivity and oxidation-reduction rate when compared with those of chalcopyrite (A). The work is potentially useful in interpreting the inconsistence of the researches of chalcopyrite hydrometallurgy.
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- 2015
80. Characteristics and impacts on favorable reservoirs of carbonate ramp microfacies: A case study of the Middle—Lower Ordovician in Gucheng area, Tarim Basin, NW China
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Yini LIU, Mingyi HU, San ZHANG, Junlong ZHANG, Da GAO, and Chuantao XIAO
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carbonate ramp ,microfacies type ,high frequency sequence ,Ordovician ,dolomite reservoir ,Tarim Basin ,Petroleum refining. Petroleum products ,TP690-692.5 - Abstract
Based on the latest drilling core, thin section, 3D seismic, well logging data as well as exploration results, the sequence stratigraphy and sedimentary microfacies of the Middle—Lower Ordovician carbonates in Gucheng area, and their controlling effects on the development of reservoir were examined by the theories and methods of fine carbonate sedimentology. The results show that the Middle—Lower Ordovician in Gucheng area is a set of typical carbonate ramp deposits, which can be divided into 10 microfacies in 4 subfacies as follows: back ramp, inner shallow ramp, outer shallow ramp, and deep ramp. The back ramp subfacies consists of muddy-dolomitic flat and dolomitic lagoon microfacies; it is dominated by lamellar micrite dolomite tight in lithology. The inner shallow ramp subfacies includes dolomitic shoal and dolomitic flat in shoal top and dolomitic flat between shoals microfacies; it is mainly composed of crystal dolomite with metasomatic residual structure, as well as abundant karst vugs and intercrystalline pores. The crystal dolomite has an average porosity of 4.36%. The outer ramp subfacies includes medium—high and low energy grain shoal and inter-shoal microfacies; it is dominated by sandy limestone, oolitic limestone, and micrite limestone with few pores. The deep ramp subfacies is dominated by low-energy argillaceous deposits, with local presences of storm shoal microfacies. The Lower—Middle Ordovician has six third-order sequences from bottom to top, among which sequence (SQ3) represents the third member of Yingying Formation. The main reservoir has three fourth-order high-frequency sequences. Apparently, the favorable reservoir in the study area is jointly controlled by sedimentary microfacies and high frequency sequence in the carbonate ramp. The former controls the primary pore structure, and the latter controls the intensities of karstification exposure and dolomitization in the penecontemporaneous period. The dolomitic shoals and top dolomitic flats of different stages, superimposed and connected into favorable reservoirs of considerable scale like “platform margin”, are favorable exploration facies in the carbonate ramp.
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- 2022
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81. Safety assessment of monosodium glutamate based on intestinal function and flora in mice
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Jinzhao Xu, Mengqi Tang, Yini Liu, Jinghan Xu, and Xiaoxi Xu
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Monosodium glutamate ,Safety assessment ,Intestinal flora ,Intestinal inflammation ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Although monosodium glutamate (MSG) is a widely used food additive, its safety and systemic side effects have not been fully clarified. The intestinal flora is closely associated with human health; however, it remains unclear whether MSG consumption can affect health by acting on the intestinal flora. In this study, serum biomarkers, intestinal structure, intestinal immunity, and intestinal flora were examined to investigate the effects of different doses of sodium glutamate on the body, intestinal function, and intestinal flora of mice. The results showed that 30 mg/kg MSG had no significant effect on serum C-reactive protein, trimethylamine N-oxide, angiotensin II, intestinal interleukin (IL)-1β, IL-6, tumor necrosis factor-α, secretory IgA and fecal albumin in mice, but also promoted intestinal development and regulated the intestinal flora. Moreover, 1500 mg/kg MSG increased the risk of cardiovascular disease and damaged the intestinal structure and flora. In this study, MSG was also found to be healthier than salt at the equivalent sodium concentration. Collectively, these findings suggested that low doses of MSG were safe for mice and may have some health benefits as a probiotic by promoting intestinal development and regulating the intestinal flora.
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- 2022
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82. Maternal exposure to life events during pregnancy and congenital heart disease in offspring: a case-control study in a Chinese population
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Jing Li, Yujiao Du, Yini Liu, Jiaoyang Du, Ruo Zhang, Pengfei Qu, Hong Yan, Duolao Wang, and Shaonong Dang
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Life events ,Congenital heart disease ,Case-control study ,Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Background Previous studies have suggested that maternal stress could increase the risk of some adverse pregnancy outcomes, but evidence on congenital heart disease (CHD) is limited. We aimed to explore the association between maternal exposure to life events during pregnancy and CHD in offspring. Methods The data was based on an unmatched case-control study about CHD conducted in Shaanxi province of China from 2014 to 2016. We included 2280 subjects, 699 in the case group and 1581 in the control group. The cases were infants or fetuses diagnosed with CHD, and the controls were infants without any birth defects. The life events were assessed by the Life Events Scale for Pregnant Women, and were divided into positive and negative events for synchronous analysis. A directed acyclic graph was drawn to screen the confounders. Logistic regression was employed to estimate the odds ratio and 95% confidence interval for the effects of life events on CHD. Results After controlling for the potential confounders, the pregnant women experiencing the positive events during pregnancy had lower risk of CHD in offspring than those without positive events (OR = 0.38, 95%CI: 0.30 ~ 0.48). The risk of CHD in offspring could increase by 62% among the pregnant women experiencing the negative events compared to those without (OR = 1.62, 95%CI: 1.29 ~ 2.03). Both effects showed a certain dose-response association. Besides, the positive events could weaken the risk impact of negative events on CHD. Conclusion It may suggest that maternal exposure to negative life events could increase the risk of CHD in offspring, while experiencing positive events could play a potential protective role.
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- 2021
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83. [Effect of small interfering RNA targeting p63 on the proliferation and invasiveness of human cholangiocarcinoma cells in vitro]
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Zhan, Liu, Mingliang, Zhang, Yini, Li, Yu, Zhang, and Zhoujun, She
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Cholangiocarcinoma ,Bile Duct Neoplasms ,Cell Movement ,Cell Line, Tumor ,Humans ,Membrane Proteins ,Neoplasm Invasiveness ,RNA, Small Interfering ,Transfection ,Cell Proliferation - Abstract
To construct a small interfering RNA (siRNA) vector targeting p63 and observe its effect on the proliferation and invasiveness of human cholangiocarcinoma cells in vitro.Real-time PCR was used to examine the expression of p63 in human cholangiocarcinoma QBC939 cells. The recombinant lentivirus shRNA-p63 vector was constructed and transfected into QBC939 cells via Lipofectamine 2000 to establish a cholangiocarcinoma cell line with stable expression of siRNA-p63. The interfering efficiency of the siRNA targeting p63 was assessed using Western blotting. MTT and soft agar colony formation assays were used to evaluate the changes in the cell proliferation, and Boyden test was employed to observe the cell invasiveness after the transfection.QBC939 cells showed a high expression of p63. The recombinant lentivirus shRNA-p63 vector was successfully constructed as verified by sequencing. Transfection with the vector significantly suppressed the proliferation and invasiveness of QBC939 cells.Down-regulation of p63 can inhibit the proliferation and invasiveness of human cholangiocarcinoma QBC939 cells in vitro.
- Published
- 2012
84. Characterization of aging cancer-associated fibroblasts draws implications in prognosis and immunotherapy response in low-grade gliomas
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Zijian Zhou, Jinhong Wei, Lijun Kuang, Ke Zhang, Yini Liu, Zhongming He, Luo Li, and Bin Lu
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low-grade glioma ,aging cancer-associated fibroblasts ,tumor microenvironment ,prognosis ,immunotherapy response ,Genetics ,QH426-470 - Abstract
Background: Due to the highly variable prognosis of low-grade gliomas (LGGs), it is important to find robust biomarkers for predicting clinical outcomes. Aging cancer-associated fibroblasts (CAFs) within the senescent stroma of a tumor microenvironment (TME) have been recently reported to play a key role in tumor development. However, there are few studies focusing on this topic in gliomas.Methods and Results: Based on the transcriptome data from TCGA and CGGA databases, we identified aging CAF-related genes (ACAFRGs) in LGGs by the weighted gene co-expression network analysis (WGCNA) method, followed by which LGG samples were classified into two aging CAF-related gene clusters with distinct prognosis and characteristics of the TME. Machine learning algorithms were used to screen out eight featured ACAFRGs to characterize two aging CAF-related gene clusters, and a nomogram model was constructed to predict the probability of gene cluster A for each LGG sample. Then, a powerful aging CAF scoring system was developed to predict the prognosis and response to immune checkpoint blockage therapy. Finally, the ACAFRGs were verified in two glioma-related external datasets. The performance of the aging CAF score in predicting the immunotherapy response was further validated in two independent cohorts. We also confirmed the expression of ACAFRGs at the protein level in glioma tissues through the Human Protein Atlas website and Western blotting analysis.Conclusion: We developed a robust aging CAF scoring system to predict the prognosis and immunotherapy response in LGGs. Our findings may provide new targets for therapeutics and contribute to the exploration focusing on aging CAFs.
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- 2022
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85. The effect of sociodemographic factors on COVID-19 incidence of 342 cities in China: a geographically weighted regression model analysis
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Huihui Zhang, Yini Liu, Fangyao Chen, Baibing Mi, Lingxia Zeng, and Leilei Pei
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COVID-19 ,Sociodemographic factor ,Spatial modeling ,Spatial distribution ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Since December 2019, the coronavirus disease 2019 (COVID-19) has spread quickly among the population and brought a severe global impact. However, considerable geographical disparities in the distribution of COVID-19 incidence existed among different cities. In this study, we aimed to explore the effect of sociodemographic factors on COVID-19 incidence of 342 cities in China from a geographic perspective. Methods Official surveillance data about the COVID-19 and sociodemographic information in China’s 342 cities were collected. Local geographically weighted Poisson regression (GWPR) model and traditional generalized linear models (GLM) Poisson regression model were compared for optimal analysis. Results Compared to that of the GLM Poisson regression model, a significantly lower corrected Akaike Information Criteria (AICc) was reported in the GWPR model (61953.0 in GLM vs. 43218.9 in GWPR). Spatial auto-correlation of residuals was not found in the GWPR model (global Moran’s I = − 0.005, p = 0.468), inferring the capture of the spatial auto-correlation by the GWPR model. Cities with a higher gross domestic product (GDP), limited health resources, and shorter distance to Wuhan, were at a higher risk for COVID-19. Furthermore, with the exception of some southeastern cities, as population density increased, the incidence of COVID-19 decreased. Conclusions There are potential effects of the sociodemographic factors on the COVID-19 incidence. Moreover, our findings and methodology could guide other countries by helping them understand the local transmission of COVID-19 and developing a tailored country-specific intervention strategy.
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- 2021
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86. Mechanistic insights into caspase-9 activation by the structure of the apoptosome holoenzyme.
- Author
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Yini Li, Mengying Zhou, Qi Hu, Xiao-Chen Bai, Weiyun Huang, Scheres, Sjors H. W., and Yigong Shi
- Subjects
- *
APOPTOSIS inhibition , *CASPASE inhibitors , *CELL death inhibition , *ELECTRON microscope techniques , *LOW temperature engineering - Abstract
Mammalian intrinsic apoptosis requires activation of the initiator caspase-9, which then cleaves and activates the effector caspases to execute cell killing. The heptameric Apaf-1 apoptosome is indispensable for caspase-9 activation by together forming a holoenzyme. The molecular mechanism of caspase-9 activation remains largely enigmatic. Here, we report the cryoelectron microscopy (cryo-EM) structure of an apoptotic holoenzyme and structureguided biochemical analyses. The caspase recruitment domains (CARDs) of Apaf-1 and caspase-9 assemble in two different ways: a 4:4 complex docks onto the central hub of the apoptosome, and a 2:1 complex binds the periphery of the central hub. The interface between the CARD complex and the central hub is required for caspase-9 activation within the holoenzyme. Unexpectedly, the CARD of free caspase-9 strongly inhibits its proteolytic activity. These structural and biochemical findings demonstrate that the apoptosome activates caspase-9 at least in part through sequestration of the inhibitory CARD domain. [ABSTRACT FROM AUTHOR]
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- 2017
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87. Treatment with MDL 72527 Ameliorated Clinical Symptoms, Retinal Ganglion Cell Loss, Optic Nerve Inflammation, and Improved Visual Acuity in an Experimental Model of Multiple Sclerosis
- Author
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Fang Liu, Moaddey Alfarhan, Leanna Baker, Nidhi Shenoy, Yini Liao, Harry O. Henry-Ojo, Payaningal R. Somanath, and S. Priya Narayanan
- Subjects
multiple sclerosis ,vision ,neurodegeneration ,inflammation ,optic neuritis ,experimental autoimmune encephalomyelitis ,Cytology ,QH573-671 - Abstract
Multiple Sclerosis (MS) is a highly disabling neurological disease characterized by inflammation, neuronal damage, and demyelination. Vision impairment is one of the major clinical features of MS. Previous studies from our lab have shown that MDL 72527, a pharmacological inhibitor of spermine oxidase (SMOX), is protective against neurodegeneration and inflammation in the models of diabetic retinopathy and excitotoxicity. In the present study, utilizing the experimental autoimmune encephalomyelitis (EAE) model of MS, we determined the impact of SMOX blockade on retinal neurodegeneration and optic nerve inflammation. The increased expression of SMOX observed in EAE retinas was associated with a significant loss of retinal ganglion cells, degeneration of synaptic contacts, and reduced visual acuity. MDL 72527-treated mice exhibited markedly reduced motor deficits, improved neuronal survival, the preservation of synapses, and improved visual acuity compared to the vehicle-treated group. The EAE-induced increase in macrophage/microglia was markedly reduced by SMOX inhibition. Upregulated acrolein conjugates in the EAE retina were decreased through MDL 72527 treatment. Mechanistically, the EAE-induced ERK-STAT3 signaling was blunted by SMOX inhibition. In conclusion, our studies demonstrate the potential benefits of targeting SMOX to treat MS-mediated neuroinflammation and vision loss.
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- 2022
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88. Ferroptosis-mediated Crosstalk in the Tumor Microenvironment Implicated in Cancer Progression and Therapy
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Yini Liu, Chunyan Duan, Rongyang Dai, and Yi Zeng
- Subjects
ferroptosis ,metabolism ,cancer progress ,immunity ,tumor microenvironment ,Biology (General) ,QH301-705.5 - Abstract
Ferroptosis is a recently recognized form of non-apoptotic regulated cell death and usually driven by iron-dependent lipid peroxidation and has arisen to play a significant role in cancer biology. Distinct from other types of cell death in morphology, genetics, and biochemistry, ferroptosis is characterized by the accumulation of lipid peroxides and lethal reactive oxygen species controlled by integrated oxidant and antioxidant systems. Increasing evidence indicates that a variety of biological processes, including amino acid, iron, lactate, and lipid metabolism, as well as glutathione, phospholipids, NADPH, and coenzyme Q10 biosynthesis, are closely related to ferroptosis sensitivity. Abnormal ferroptotic response may modulate cancer progression by reprogramming the tumor microenvironment (TME). The TME is widely associated with tumor occurrence because it is the carrier of tumor cells, which interacts with surrounding cells through the circulatory and the lymphatic system, thus influencing the development and progression of cancer. Furthermore, the metabolism processes play roles in maintaining the homeostasis and evolution of the TME. Here, this review focuses on the ferroptosis-mediated crosstalk in the TME, as well as discussing the novel therapeutic strategies for cancer treatment.
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- 2021
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89. Syringa oblata
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Yini, Li and Svenson, Sven E.
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Home and garden - Abstract
Name: Syringa oblata Common Name: Early lilac; broadleaf lilac; zlding xiang Hardiness: 3 to 7 (4 to 6 best) Mature height: 8 to 12 feet Mature spread: 8 to 12 [...]
- Published
- 2014
90. Constraints on the Organic Matter Accumulation of Lower Cambrian Niutitang Shales in the Middle Yangtze Region, South China
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Xing Niu, Yini Liu, Detian Yan, Mingyi Hu, Zixuan Liu, Xiaosong Wei, and Mingtao Zuo
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Geology ,QE1-996.5 - Abstract
AbstractThe lower Cambrian Niutitang shales, as one of target intervals with the greatest potential for shale gas exploration and development, have attracted much attention. Nevertheless, the organic matter enrichment mechanisms of the lower Cambrian Niutitang shales need further study, especially in the hydrothermal active zone. In this study, samples from ND1 well in western Hubei Province, middle Yangtze region, South China, were investigated for the controlling factors of organic matter accumulation of Lower Cambrian Niutitang shales by detailed petrographic, mineralogic, and geochemical proxies. The results show that hydrothermal activity and sea level fluctuation controlled the redox conditions and paleoproductivity of seawater and ultimately controlled the organic matter accumulation of Niutitang formation. In the Niu-1 member, the intense hydrothermal events lead to a suboxic to anoxic environment, which is conducive to the organic matter preservation. However, low sea level strengthens the restriction of water mass and reduced nutrient upwelling into the shelf, leading to decreased marine primary productivity, which was ultimately responsible for depleted organic matter accumulation in the Niu-1 member. In the Niu-2 member, the anoxic-euxinic environment and high paleoproductivity, driven by continuous hydrothermal activity and rising sea level, were the main factors controlling the enrichment of organic matter. In the Niu-3 member, the dysoxic to oxic condition plus low primary productivity, caused by the disappearance of hydrothermal activities and sea-level fall, resulted in the unfavorable organic matter accumulation. The results of this paper enrich the model of organic matter enrichment in the lower Cambrian black shale in the middle Yangtze region.
- Published
- 2021
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91. Safety Risk Management of Prefabricated Building Construction Based on Ontology Technology in the BIM Environment
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Ye Shen, Min Xu, Yini Lin, Caiyun Cui, Xiaobo Shi, and Yong Liu
- Subjects
ontology technology ,BIM environment ,prefabricated buildings ,safety risk management ,case study ,Building construction ,TH1-9745 - Abstract
The extensive application of building information modeling (BIM) technology has brought opportunities and challenges to safety risk management in the field of prefabricated building construction. It is of great significance to provide timely information and knowledge for safety risk decisions in prefabricated building construction, and to display this information visually. In response, based on the ontology theory and using the Revit software, in this study we aimed to establish a monitoring system for the construction of prefabricated buildings, which was verified through a practical case. The results revealed that, first, ontology technology can be applied in the Revit software through plug-in integration, and knowledge regarding construction safety risk management in prefabricated building construction can be shared, reused, and accumulated using this system. Second, problems with the design and construction models of prefabricated buildings that do not meet the specification requirements can be detected by the monitoring system in the Revit software. Third, automatic risk identification and response methods using ontology theory and BIM technologies can effectively promote construction safety risk management performance in relation to prefabricated buildings. These findings examine the application of ontology to the field of prefabricated construction safety risk management for the first time, enrich the research on ontology technology, and contribute to safety risk management in the construction of prefabricated buildings.
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- 2022
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92. Geographical variations in maternal dietary patterns during pregnancy associated with birth weight in Shaanxi province, Northwestern China.
- Author
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Yini Liu, Huihui Zhang, Yaling Zhao, Fangyao Chen, Baibing Mi, Jing Zhou, Yulong Chen, Duolao Wang, and Leilei Pei
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Medicine ,Science - Abstract
The geographical variation of maternal dietary patterns related to birth outcomes is important for improving the health of mothers and children; however, it is currently unknown. Thus, the objective of the study was to investigate geographical variations of maternal dietary pattern during pregnancy, and evaluate the spatial varying association of maternal dietary patterns in pregnancy with abnormal birth weight. A population-based cross-sectional study was conducted in Shaanxi province in Northwest China in 2013 to evaluate the relationship between abnormal birth weight and dietary pattern using the Geographically Weighted Logistic Regression (GWLR). Three dietary patterns during pregnancy were extracted through factor analysis, explaining approximately 45.8% of the variability of food intake. Approximately 81.6% of mothers with higher scores on the equilibrium pattern was more unlikely to have small for gestational age (SGA) infants, with the lower OR observed in Central and South Shaanxi. The snacks pattern was positively associated with low birth weight (LBW) for 23.2% of participants, with the highest OR in Central Shaanxi. Among about 80.0% of participants with higher scores on the snacks pattern living in South and Central Shaanxi, there was a higher risk for SGA. The OR values tend to descend from South to North Shaanxi. The OR values of the negative association between prudent pattern and LBW decreased from South to North Shaanxi among approximately 59.3% of participants. The prudent pattern was also negatively associated with the increasing risk of fetal macrosomia among 19.2% of participants living mainly in South Shaanxi. The association of maternal dietary patterns during pregnancy with abnormal birth weight varied geographically across Shaanxi province. The findings emphasize the importance of geographical distribution to improve the dietary patterns among disadvantaged pregnant women.
- Published
- 2021
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93. Fabrication and Characterization of Gelatin/Zein Nanofiber Films Loading Perillaldehyde for the Preservation of Chilled Chicken
- Author
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Debao Wang, Yini Liu, Jinyue Sun, Zhilan Sun, Fang Liu, Lihui Du, and Daoying Wang
- Subjects
perillaldehyde ,nanofiber ,zein ,antibacterial activity ,preservation ,Chemical technology ,TP1-1185 - Abstract
Perillaldehyde is a natural antibacterial agent extracted from perilla essential oil. In our methodology, five antibacterial nanofiber packaging films are prepared by loading different concentrations of perillaldehyde (P) into gelatin/zein (G/Z) polymers. Morphology observations show that the G/Z/P film had a good uniform microstructure and nano-diameter as the weight ratio of 5:1:0.02 (G/Z/P). Fourier transform infrared spectroscopy, and X-ray indicate that these three ingredients had good compatibility and strong interaction via hydrogen bonding. Water contact angle results show that the G/Z/P films gradually change from hydrophilic to hydrophobic with the increase of perillaldehyde. Thermal analysis indicates that the G/Z/P (5:1:0.02) film has good thermal stability. Antibacterial and storage analysis indicates that G/Z/P (5:1:0.02) film is effective to inactivate Staphylococcus aureus and Salmonella enteritidis, and obviously reduces the increasing rate of total bacteria counts and volatile basic nitrogen of chicken breasts. This study indicates that the G/Z/P (5:1:0.02) is a kind of potential antibacterial food packaging film.
- Published
- 2021
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94. The complete chloroplast genome sequence of Limonium sinense (Plumbaginaceae)
- Author
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Jianfang Li, Bei Xu, Qian Yang, Ting Wang, Qianyang Zhu, Yini Lin, and Zhan-Lin Liu
- Subjects
limonium sinense ,plastome ,phylogeny ,plumbaginaceae ,Genetics ,QH426-470 - Abstract
Limonium is a species-rich genus in Plumbaginaceae. In this study, we determined the complete chloroplast genome of Limonium sinense for potential phylogenomic analysis in the future. The plastome is 174,033 bp in length, with a large single-copy region (LSC) of 96,128 bp, a small single-copy region (SSC) of 13,517 bp and a pair of inverted repeat regions (IRs) of 32,194 bp. It contains 132 genes, including 84 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 3 pseudogenes. The overall GC content is 36.7%, while the corresponding values for the LSC, SSC, and IR region are 34.9, 31.1, and 40.6%, respectively. The phylogenetic analysis supported that L. sinense was clustered together with Plumbago auriculata in family Plumbaginaceae.
- Published
- 2020
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95. Electrical Conductivity of Multiwall Carbon Nanotube Bundles Contacting with Metal Electrodes by Nano Manipulators inside SEM
- Author
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Quan Yang, Li Ma, Shungen Xiao, Dongxing Zhang, Aristide Djoulde, Maosheng Ye, Yini Lin, Songchao Geng, Xuan Li, Tao Chen, and Lining Sun
- Subjects
carbon nanotube ,metallicity ,semiconductivity ,molecular dynamics ,density functional theory ,Chemistry ,QD1-999 - Abstract
Determining the metallicity and semiconductivity of a multi-walled carbon nanotube (MWCNT) bundle plays a particularly vital role in its interconnection with the metal electrode of an integrated circuit. In this paper, an effective method is proposed to determine the electrical transport properties of an MWCNT bundle using a current–voltage characteristic curve during its electrical breakdown. We established the reliable electrical nanoscale contact between the MWCNT bundle and metal electrode using a robotic manipulation system under scanning electron microscope (SEM) vacuum conditions. The experimental results show that the current–voltage curve appears as saw-tooth-like current changes including up and down steps, which signify the conductance and breakdown of carbon shells in the MWCNT bundle, respectively. Additionally, the power law nonlinear behavior of the current–voltage curve indicates that the MWCNT bundle is semiconducting. The molecular dynamics simulation explains that the electron transport between the inner carbon shells, between the outermost carbon shells and gold metal electrode and between the outermost carbons shells of two adjacent individual three-walled carbon nanotubes (TWCNTs) is through their radial deformation. Density functional theory (DFT) calculations elucidate the electron transport mechanism between the gold surface and double-wall carbon nanotube (DWCNT) and between the inner and outermost carbon shells of DWCNT using the charge density difference, electrostatic potential and partial density of states.
- Published
- 2021
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96. Meta-analysis of the Effects of Aerobic Exercise on Executive Function in Overweight and Obese Children
- Author
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ZHAO Rui, CHEN Leqin, WU Yini, LI Qianqian
- Subjects
overweight ,obesity ,child ,executive function ,aerobic exercise ,meta-analysis ,Medicine - Abstract
Background Studies have confirmed that executive function in overweight and obese children is closely related to obesity and may have a bidirectional association. Aerobic exercise, as an effective intervention, can effectively promote their brain development and cognitive function, especially executive function, but the quantitative relationship of the improvement effect still needs to be further explored. Objective To systematically evaluate the intervention effect of aerobic exercise on executive function-related indexes in overweight and obese children. Methods Randomized controlled trials of aerobic exercise interventions for executive function in overweight and obese children were searched in CNKI, Wanfang Data, CBM, Cochrane Library, PubMed, Embase, and Web of Science databases, and the timeframe for searching was from the establishment of each database to July 2023. The quality of the included literature was assessed according to the Cochrane Risk of Bias Assessment Tool, and Meta-analysis of outcome indicators was performed using RevMan 5.3 and Stata 15.0 software. Results Nine randomized controlled trials, including 940 overweight and obese children, were finally included. The results of Meta-analysis showed that a single session of aerobic exercise intervention was effective in improving the executive function of overweight and obese children (WMD=-6.98, 95%CI=-11.89 to -2.07, P=0.005). Subgroup analyses showed no significant differences in the improvement of any of the executive function subcomponents in overweight and obese children with a single intervention duration of less than 30 minutes of aerobic exercise (WMD=-0.84, 95%CI=-9.37 to 7.68, P=0.85) ; aerobic exercise with a single intervention duration longer than 30 minutes improved inhibitory function in overweight and obese children (WMD=-10.50, 95%CI=-19.15 to -1.85, P=0.02). When a long-term exercise intervention was carried out (the intervention period was 8 weeks), in contrast to the control group, the aerobic exercise improved interference control in overweight and obese children (WMD=-0.16, 95%CI=-0.18 to -0.14, P
- Published
- 2024
- Full Text
- View/download PDF
97. Prevalence and Associated Factors of Mild Cognitive Impairment in Young and Middle-aged Hospitalized Patients with Hypertension
- Author
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YE Qingfang, WANG Yini, LI Ling, LIU Guojie, LIN Ping, LI Qiujie
- Subjects
hypertension ,cognitive dysfunction ,middle aged ,young adult ,type d personality ,root cause analysis ,Medicine - Abstract
Background Mild cognitive impairment (MCI) is highly prevalent in hypertensive patients, but the current studies on MCI in hypertension mostly focus on the elderly group, while scarcely involve young and middle-aged patients. Objective To investigate the prevalence and associated factors of MCI in young and middle-aged hospitalized patients with hypertension. Methods A convenience sample of 213 young and middle-aged hypertensive inpatients were recruited from a tertiary grade A hospital in Harbin from May to December 2021. The General Demographic Questionnaire, Montreal Cognitive Assessment (MoCA) , and the Type-D Scale-14 (DS14) were used for understanding patients' demographics, cognitive impairment status, and D-type personality prevalence, respectively. Multiple Logistic regression was used to analyze associated factors of MCI. Results The prevalence of MCI was 37.56% (80/213) . Multiple Logistic regression analysis showed that age〔OR=1.073, 95%CI (1.033, 1.115) 〕, education level〔junior college education level: OR=0.278, 95%CI (0.084, 0.920) , smoking history〔OR=2.494, 95%CI (1.146, 5.426) 〕, stage of hypertension〔stage 2: OR=3.442, 95%CI (1.252, 9.468) ; stage 3: OR=3.934, 95%CI (1.518, 10.193) 〕, D-type personality〔OR=2.160, 95%CI (1.015, 4.598) , TG〔OR=1.596, 95%CI (1.125, 2.265) 〕, and HDL-C〔OR=0.185, 95%CI (0.049, 0.707) 〕were influential factors of MCI in hypertension (P
- Published
- 2023
- Full Text
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98. Enrichment of H3K9me2 on Unsynapsed Chromatin in Caenorhabditis elegans Does Not Target de Novo Sites.
- Author
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Yiqing Guo, Bing Yang, Yini Li, Xia Xu, and Maine, Eleanor M.
- Subjects
- *
CAENORHABDITIS elegans genetics , *CHROMATIN , *MEIOSIS - Abstract
Many organisms alter the chromatin state of unsynapsed chromosomes during meiotic prophase, a phenomenon hypothesized to function in maintaining germline integrity. In Caenorhabditis elegans, histone H3 lysine 9 dimethylation (H3K9me2) is detected by immunolabeling as enriched on unsynapsed meiotic chromosomes. Loss of the SET domain protein, MET-2, greatly reduces H3K9me2 abundance and results in germline mortality. Here, we used him-8 mutations to disable X chromosome synapsis and performed a combination of molecular assays to map the sites of H3K9me2 accumulation, evaluate H3K9me2 abundance in germline vs. whole animals, and evaluate the impact of H3K9me2 loss on the germline transcriptome. Our data indicate that H3K9me2 is elevated broadly across the X chromosome and at defined X chromosomal sites in him-8 adults compared with controls. H3K9me2 levels are also elevated to a lesser degree at sites on synapsed chromosomes in him-8 adults compared with controls. These results suggest that MET-2 activity is elevated in him-8 mutants generally as well as targeted preferentially to the unsynapsed X. Abundance of H3K9me2 and other histone H3 modifications is low in germline chromatin compared with whole animals, which may facilitate genome reprogramming during gametogenesis. Loss of H3K9me2 has a subtle impact on the him-8 germline transcriptome, suggesting H3K9me2 may not be a major regulator of developmental gene expression in C. elegans. We hypothesize H3K9me2 may have a structural function critical for germline immortality, and a greater abundance of these marks may be required when a chromosome does not synapse. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
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