2,630 results on '"Yan Pan"'
Search Results
52. Editorial: Bioresponsive nanomaterials for drug delivery or controlled release
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Yan Pan, Kezhen Qi, Jijun Fu, Wei Gao, Zhao Li, and Zhiqiang Lin
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bioresponsive nanomaterials ,drug delivery ,controlled release ,targeting ,novel nanomedicine ,Biotechnology ,TP248.13-248.65 - Published
- 2023
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53. The influence of Hyssopus cuspidatus Boriss extract on lipid mediators metabolism network in asthmatic mice
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Kong Ling-Fei, Rong Xiao-Juan, Yan Pan, Qin Tuo, Zhang Xiao-Hui, Kang Yu-Tong, Cheng Bo, Su Wen-Ling, Gao Tian-Le, and Tie Cai
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Hyssopus cuspidatus Boriss extract (SXCF) ,lipid mediators (LMs) ,asthma ,inflammation ,cytokines ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Current drugs do not provide an absolute cure or modify the course of asthma. Hyssopus cuspidatus Boriss extract (SXCF) has been used as Uyghur medicine for several years to treat bronchial asthma. However, very limited research has been conducted on the therapeutic mechanisms of SXCF. Disruptions in the metabolic network of lipid mediators (LMs) are closely linked to the development of asthma. Here, we explored the therapeutic mechanism of SXCF in asthma based on the metabolic network of LMs, aiming to contribute to the understanding of SXCF in asthma treatment at the molecular level. The UHPLC-MRM strategy was used for the quantitative detection of LMs in the lung tissue and in the peripheral circulatory system (serum). ELISA was used to detect IgE in serum and cytokines in BALF. The lung tissue sections were stained with H&E to observe the infiltration of inflammatory cells, and behavioural changes in mice were observed and recorded throughout the animal experiment. In contrast to the asthma group, the opposite result was observed in the SXCF groups, where the perturbed LMs metabolic network was partly restored in a dose-dependent manner with a significant elevation of anti-inflammatory metabolites, while pro-inflammatory lipids were decreased. As significant downregulation of IgE and pro-inflammatory cytokines was observed, IgE and cytokines analysis also supported the anti-inflammatory effects of SXCF. It was also noticed that SXCF treatment reduced the number of coughs and decreased the inflammatory cell infiltration around the bronchus in mice. These results suggested that SXCF has a significant ameliorative effect on ovalbumin (OVA)-induced asthma. The modulation of LMs is a possible underlying mechanism of the SXCF effects.
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- 2023
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54. CircUBE2Q2 promotes differentiation of cattle muscle stem cells and is a potential regulatory molecule of skeletal muscle development
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Rui-Men Zhang, Yu Pan, Chao-Xia Zou, Qiang An, Juan-Ru Cheng, Peng-Ju Li, Zi-Hua Zheng, Yan Pan, Wan-You Feng, Su-Fang Yang, De-Shun Shi, Ying-Ming Wei, and Yan-Fei Deng
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Cattle ,Muscle stem cells ,circRNAs ,Proliferation ,Differentiation ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background The growth and development of muscle stem cells (MuSCs) are significant events known to affect muscle plasticity, disease, meat production, and meat quality, which involves the types and functions of mRNA and non-coding RNA. Here, MuSCs were cultured from Guangxi fetal cattle. RNA sequencing was used to analyze the RNA expression of mRNA and non-coding RNAs during the cell proliferation and differentiation phases. Results Two thousand one hundred forty-eight mRNAs and 888 non-coding RNAs were differentially expressed between cell proliferation and differentiation phases, including 113 miRNAs, 662 lncRNAs, and 113 circRNAs. RT-qPCR verified the differential expression levels of mRNAs and non-coding RNAs, and the differentially expressed circUBE2Q2 was subsequently characterized. Expression profile analysis revealed that circUBE2Q2 was abundant in muscle tissues and intramuscular fat. The expression of cricUBE2Q2 was also significantly upregulated during MuSCs myogenic differentiation and SVFs adipogenic differentiation and decreased with age in cattle muscle tissue. Finally, the molecular mechanism of circUBE2Q2 regulating MuSCs function that affects skeletal muscle development was investigated. The results showed that circUBE2Q2 could serve as a sponge for miR-133a, significantly promoting differentiation and apoptosis of cultured MuSCs, and inhibiting proliferation of MuSCs. Conclusions CircUBE2Q2 is associated with muscle growth and development and induces MuSCs myogenic differentiation through sponging miR-133a. This study will provide new clues for the mechanisms by which mRNAs and non-coding RNAs regulate skeletal muscle growth and development, affecting muscle quality and diseases.
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- 2022
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55. Identification of TIMELESS and RORA as key clock molecules of non-small cell lung cancer and the comprehensive analysis
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Haocheng Xian, Yuan Li, Boliang Zou, Yajuan Chen, Houqing Yin, Xuejun Li, and Yan Pan
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Non-small cell lung cancer ,Circadian clock genes ,TIMELESS ,RORA ,Bioinformatics ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The incidence rate of non-small cell lung cancer (NSCLC) has been increasing worldwide, and the correlation of circadian rhythm disruption with a raised risk of cancer and worse prognosis has been shown by accumulating evidences recently. On the other hand, drug resistance and the impact of tumor heterogeneity have been inevitable in NSCLC therapy. These both lead to an urgent need to identify more useful prognostic and predictive markers for NSCLC diagnosis and treatment, especially on the aspect of circadian clock genes. Methods The expression of the main clock genes in cancer was probed with TIMER and Oncomine databases. The prognostic value of key clock genes was probed systematically with the Kaplan–Meier estimate and Cox regression on samples from TCGA database. RT-qPCR was performed on patient tissue samples to further validate the results from databases. The functional enrichment analysis was performed using the “ClusterProfiler” R package, and the correlation of key clock genes with tumor mutation burden, immune checkpoint, and immune infiltration levels were also assessed using multiple algorithms including TIDE, TIMER2.0, and XCELL. Results TIMELESS was significantly upregulated in lung tissue of clinical lung cancer patients as well as TCGA and Oncomine databases, while RORA was downregulated. Multivariate Cox regression analysis indicated that TIMELESS (P = 0.004, HR = 1.21 [1.06, 1.38]) and RORA (P = 0.047, HR = 0.868 [0.755, 0.998]) has a significant correlation with overall survival in NSCLC. Genes related to TIMELESS were enriched in the cell cycle and immune system, and the function of RORA was mainly focused on oncogenic signaling pathways or glycosylation and protein activation. Also, TIMELESS was positively correlated with tumor mutation burden while RORA was negatively correlated with it. TIMELESS and RORA were also significantly correlated with immune checkpoint and immune infiltration levels in NSCLC. Additionally, TIMELESS showed a significant positive relationship with lipid metabolism. Conclusions TIMELESS and RORA were identified as key clock genes in NSCLC, and were independent prognostic factors for overall survival in NSCLC. The function of them were assessed in many aspects, indicating the strong potential of the two genes to serve as biomarkers for NSCLC progression and prognosis.
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- 2022
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56. In vitro and In silico studies of interactions of cathinone with human recombinant cytochrome P450 CYP(1A2), CYP2A6, CYP2B6, CYP2C8, CYP2C19, CYP2E1, CYP2J2, and CYP3A5
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Sharoen Yu Ming Lim, Jason Siau Ee Loo, Mustafa Alshagga, Mohammed Abdullah Alshawsh, Chin Eng Ong, and Yan Pan
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Cathinone ,CYP450 ,in vitro ,in silico ,Docking ,Herb-drug interaction ,Toxicology. Poisons ,RA1190-1270 - Abstract
Cathinone is the psychostimulatory major active ingredient of khat (Catha edulis Forsk) and are often co-abused with alcohols and polydrugs. With the increased consumption of khat and cathinones on a global scale, efforts should be channelled into understanding and minimising the excruciating effects of possible khat-drug interactions. This study aimed to determine the in vitro inhibitory effects of cathinone on CYP1A2, CYP2A6, CYP2B6, CYP2C8, CYP2C19, CYP2E1, CYP2J2 and CYP3A5 and the in silico identification of their type of interactions and residues involved. The activities of CYP1A2, CYP2A6, CYP2B6, CYP2C8, CYP2C19, CYP2E1, CYP2J2 and CYP3A5 were examined by fluorescence based assays using recombinant cDNA-expressed human CYPs in Vivid® P450 screening kits. Cathinone reversibly inhibited CYP1A2, CYP2A6 and CYP3A5 via competitive, uncompetitive and noncompetitive modes with inhibition constant (Ki) values of 57.12, 13.75 and 23.57 µM respectively. Cathinone showed negligible inhibitory effects on CYP2B6, CYP2C8, CYP2C19, CYP2E1 and CYP2J2. Cathinone showed negligible time dependent inhibition on all 8 CYPs. Docking studies was performed on cathinone with CYP1A2, CYP2A6 and CYP3A5 following their inhibition in vitro. Cathinone is bound to a few key amino acid residues in the active sites while π-π interactions are formed in aromatic clusters of CYP1A2 and CYP3A5. These findings offer valuable reference for the use of cathinones and khat when combined with therapeutic drugs that are metabolised by CYP enzymes especially patients on medications metabolised by CYP1A2, CYP2A6 and CYP3A5.
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- 2022
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57. Tens to Hundreds of Mrad/s Fast Polarization Tracking and Demultiplexing Using Angle-Plus-Phase Algorithm in Stokes Space
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Yan Pan, Lianshan Yan, Anlin Yi, Lin Jiang, Wei Pan, Bin Luo, and Alan Pak Tao Lau
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Digital signal processing ,optical fiber communication ,polarization division multiplexing ,fast polarization tracking ,Applied optics. Photonics ,TA1501-1820 ,Optics. Light ,QC350-467 - Abstract
A fast polarization tracking and demultiplexing algorithm in polarization-division-multiplexing (PDM) systems is proposed and demonstrated. The scheme utilizes two optimizing parameters in Stokes Space, including the polarization angle and the phase information. In addition to its transparency to modulation formats, the angle-plus-phase algorithm (APA) could provide fast convergence up to >100-Mrad/s polarization tracking speed. Compared to common polarization demultiplexing algorithms such as constant modulus algorithm (CMA) and linear Kalman filter (LKF), experimental results show that the polarization tracking capability of the proposed APA algorithm is significantly improved without sacrificing the transmission performance. Specifically, compared to CMA, the tracking speed can be improved from 9-Mrad/s to 160-Mrad/s for PDM quadrature phase shift keying (PDM-QPSK) signals. Furthermore, compared to CMA and LKF, APA has the best tracking performance, and the tracking speed can be reached to 34-Mrad/s for PDM 16 quadrature amplitude modulation (PDM-16QAM) signal.
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- 2022
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58. A nomogram for predicting immunoglobulin-resistant Kawasaki disease in children
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Yan Pan and Qihong Fan
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Medicine (General) ,R5-920 - Abstract
Objective This case–control study focused on the establishment and internal validation of a risk nomogram for intravenous immunoglobulin (IVIG)-resistant Kawasaki disease (KD) using the Kawasaki Disease Database. Methods The Kawasaki Disease Database is the first public database for KD researchers. A prediction nomogram for IVIG-resistant KD was constructed using multivariable logistic regression. Then, the C-index was used to assess the discriminating ability of the proposed prediction model, a calibration plot was drawn to evaluate its calibration, and a decision curve analysis was adopted to assess its clinical usefulness. Bootstrapping validation was performed for interval validation. Results The median ages of IVIG-resistant and -sensitive KD groups were 3.3 and 2.9 years, respectively. Predicting factors incorporated into the nomogram were coronary artery lesions, C-reactive protein, percentage of neutrophils, platelets, aspartate aminotransferase, and alanine transaminase. Our constructed nomogram exhibited favorable discriminating ability (C-index: 0.742; 95% confidence interval: 0.673–0.812) and excellent calibration. Moreover, interval validation achieved a high C-index of 0.722. Conclusions The as-constructed new IVIG-resistant KD nomogram that incorporated C-reactive protein, coronary artery lesions, platelets, percentage of neutrophils, alanine transaminase, and aspartate aminotransferase may be adopted for predicting the risk of IVIG-resistant KD.
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- 2023
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59. The influence mechanism of the relationship between entrepreneurial learning and entrepreneurial intention
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Cong Lin, Yan Pan, Yanli Yu, Libo Feng, and Zhiyong Chen
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mixed-methods research ,entrepreneurial learning ,entrepreneurial self-efficacy ,entrepreneurial intention ,influence mechanism ,Psychology ,BF1-990 - Abstract
Based on relevant literature, this study adopted entrepreneurial learning theory to construct a relationship model between entrepreneurial learning and entrepreneurial intention. In this framework, entrepreneurial learning was divided into three dimensions: entrepreneurial education learning, experiential learning, and social network learning. A questionnaire survey was conducted among 1,399 undergraduate students in Zhejiang Province to investigate how entrepreneurial learning influenced entrepreneurial intention, while considering the mediating effect of entrepreneurial self-efficacy. This empirical research found that: (1) experiential learning and social network learning had significant positive impacts on entrepreneurial intention, but there was no significant relationship between entrepreneurial education learning and entrepreneurial intention; (2) entrepreneurship education learning and social network learning had significant positive relationships with entrepreneurial self-efficacy, but experiential learning had a significant negative relationship with entrepreneurial self-efficacy; and (3) entrepreneurial self-efficacy partially mediated the relationship between experiential learning, social network learning, and entrepreneurial intention, and fully mediated the relationship between entrepreneurial education learning and entrepreneurial intention. These findings suggest that colleges and universities in China could broaden entrepreneurial learning and strengthen social network learning.
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- 2023
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60. The effectiveness and safety of prophylactic central neck dissection in clinically node-negative papillary thyroid carcinoma patients: A meta-analysis
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Yao Wang, Yibo Xiao, Yan Pan, Shuhao Yang, Kainan Li, Wei Zhao, and Xulin Hu
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papillary thyroid carcinomas ,lymph node excisions ,effectiveness ,safety ,meta-analysis ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
ObjectiveThis meta-analysis was performed to evaluate the effectiveness and safety of prophylactic central neck dissection (PCND) in patients with clinically node-negative (cN0) papillary thyroid carcinoma.Materials and methodsA meta-analysis of the literature was performed using the key words “papillary thyroid carcinomas” and “lymph node ecisions” for searches of electronic databases. Complications such as transient hypocalcemia, permanent hypocalcemia, transient and permanent hypoparathyroidism, transient and permanent vocal cord paralysis, transient recurrent and permanent recurrent laryngeal nerve injury, and local recurrence were pooled by meta-analysis. Stata17.0 was used to carry out the meta-analysis.ResultsData were extracted from 15 studies. In the present review, the group of patients who had total thyroidectomy (TT) with PCND had a lower local recurrence than the group with TT alone (OR 0.22, 95% CI 0.10-0.45, P = 0.000), whereas the incidence of permanent hypocalcemia (OR 4.24, 95% CI 1.05-17.22, P = 0.043) and transient hypoparathyroidism (OR 2.14, 95% CI 1.34-3.42, P =0.001) were higher. No significant differences were recorded in the incidence of other complications: transient hypocalcemia (OR 2.24, 95% CI 0.77-6.51, P = 0.138), permanent hypoparathyroidism (OR 1.70, 95% CI 0.89-3.27, P = 0.111), transient vocal cord paralysis (OR 1.48, 95% CI 0.78-2.83, P = 0.231), permanent vocal cord paralysis (OR 1.44, 95% CI 0.53-3.94, P = 0.477), transient recurrent laryngeal nerve injury (OR 1.47, 95% CI 0.93-2.32, P = 0.102) and permanent recurrent laryngeal nerve injury (OR 1.24, 95% CI 0.56-2.74, P = 0.587) between the two groups.ConclusionCompared with TT alone, TT with PCND was more effective in reducing local recurrence without increasing the risk of recurrent laryngeal nerve, thyroid and vocal cord, except for hypocalcemia and transient hypoparathyroidism. Therefore, we believe that TT with PCND should be recommended for patients with cN0 PTC.Systematic review registrationhttps://www.crd.york.ac.uk/prospero/, identifier CRD4202 2355078.
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- 2023
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61. Roles and action mechanisms of WNT4 in cell differentiation and human diseases: a review
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Quanlong Zhang, Yan Pan, Jingjing Ji, Yuxin Xu, Qiaoyan Zhang, and Luping Qin
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Abstract WNT family member 4 (WNT4), which belongs to the conserved WNT protein family, plays an important role in the development and differentiation of many cell types during the embryonic development and adult homeostasis. Increasing evidence has shown that WNT4 is a special ligand that not only activates the β-catenin independent pathway but also acts on β-catenin signaling based on different cellular processes. This article is a summary of the current knowledge about the expression, regulation, and function of WNT4 ligands and their signal pathways in cell differentiation and human disease processes. WNT4 is a promoter in osteogenic differentiation in bone marrow stromal cells (BMSCs) by participating in bone homeostasis regulation in osteoporotic diseases. Non-canonical WNT4 signaling is necessary for metabolic maturation of pancreatic β-cell. WNT4 is also necessary for decidual cell differentiation and decidualization, which plays an important role in preeclampsia. WNT4 promotes neuronal differentiation of neural stem cell and dendritic cell (DC) into conventional type 1 DC (cDC1). Besides, WNT4 mediates myofibroblast differentiation in the skin, kidney, lung, and liver during scarring or fibrosis. On the negative side, WNT4 is highly expressed in cancer tissues, playing a pro-carcinogenic role in many cancer types. This review provides an overview of the progress in elucidating the role of WNT4 signaling pathway components in cell differentiation in adults, which may provide useful clues for the diagnosis, prevention, and therapy of human diseases.
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- 2021
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62. Numerical studies on steady interaction of low enthalpy hypersonic double wedge flows using different gas models
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Li, Qin, Wang, Y, Weng, Yihui, Wu, Yunchuan, Wang, Mengyu, Yan, Pan, Zhang, Linsen, and Su, Wei
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Physics - Fluid Dynamics - Abstract
Numerical investigations and analyses are carried out particularly on the steady interactions of low enthalpy hypersonic 30-55-deg double wedge configuration at conditions similar to the experimental setup by Swantek & Austin. To achieve a steady solution, Re lower than those in the experiment are used. Three gas models, i.e., the perfect, equilibrium, and non-equilibrium gas models, are used to analyze the difference potentials that arise from the physical model. Grid convergence studies are first conducted at Ma=7 and Re=2.5e5/m. Subsequently, comprehensive numerical studies are carried out on the steady interactions and their evolution at Ma=7 and h0=2.1MJ/kg. Specifically: (a) The upper limits of Re are identified where the flows remain steady, and the corresponding interaction characteristics as well as differences in the three gas models are investigated. Notably, a quasi-normal shock wave is observed within the slip line passage in the case of the perfect gas model. (b) The flow characteristics of the three models, including the interaction pattern, geometric features of triple points, impingements, and separation zone, are studied and compared for Re=(4,3,2)e4/m. Differences primarily emerge between the results of the perfect gas model and the real gas model. Specifically, a transmitted shock reflecting above the separation zone is observed in the case of the perfect gas model. The effect of the gas model on temperature and specific heat ratio distributions, as well as the heat transfer and pressure coefficients over the wedge surface are investigated. The shock polar method is applied for comparison with computational results, while a 1D flow model is proposed to explain the occurrence of the quasi-normal shock wave. Finally, the effects of variations in Mach number and enthalpy are determined, by alternatively varying the two parameters around Ma=7 and h0=2.1MJ/kg at Re=4e4/m.
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- 2024
63. Saluisn-β contributes to endothelial dysfunction in monocrotaline-induced pulmonary arterial hypertensive rats
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Yan Pan, Aidong Chen, Xingxing Wang, Changlei Bao, Shuxin Liang, Haiyang Tang, and Ying Han
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Endothelial dysfunction ,Endothelium-dependent vasodilatation ,TOR2A gene product ,Nitric oxide ,Reactive oxygen species ,Pulmonary arterial hypertension ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Background: The endothelial dysfunction and the consequent attenuated pulmonary vasodilatation are the major causes of elevated pulmonary arterial resistance and pressure in pulmonary arterial hypertension (PAH). Current study aimed to explore the effects of a TOR2A gene product, salusin-β, on endothelium-dependent vascular relaxation and the progression of PAH in monocrotaline (MCT)-induced PAH rats as well as the relevant signaling pathway. Methods: Acetylcholine (ACh)-induced dose-dependent relaxation was used to evaluate the endothelium-dependent vasodilatation function. Results: The salusin-β level in plasma and pulmonary artery (PA) in MCT-PAH rats were significantly increased, while the ACh-induced endothelium-dependent vasodilatation was attenuated. After salusin-β incubation or overexpression of salusin-β gene, the endothelium-dependent relaxation was further deteriorated, while anti-salusin-β IgG incubation or knockdown of salusin-β improved it in PAH rats. The superoxide anions scavenger NAC or the antioxidant apocynin inhibited the effect of salusin-β, while the SOD inhibitor DETC further enhanced it. The nitric oxide (NO) synthase inhibitor L-NAME almost blocked the effect of anti-salusin-β IgG. Silencing of salusin-β in PAH rats decreased right ventricular (RV) systolic pressure, RV hypertrophy index, NAD(P)H oxidase activity and ROS level, and increased the eNOS activity and NO level of PA. Overexpression of salusin-β played opposite roles. Conclusions: The elevated saluisn-β level in PAH rats plays important roles in the reduction of endothelium-dependent vasodilatation and participates in the progression of PAH through stimulating NAD(P)H oxidase-ROS production and inhibiting eNOS-NO release.
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- 2022
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64. Case report: Long response to PD-1 blockade after failure of trastuzumab plus chemotherapy in advanced Epstein-Barr virus-associated gastric cancer
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Yan Pan, Linbin Lu, Huan Liu, Di Chen, Ning Han, Ruirong Yao, Xinlin Wang, Xianchun Gao, Jun Yu, Ling Chen, Fenli Zhou, Guangjun Hao, Yuanyuan Lu, Mengbin Li, Guangbin He, Fei Kang, Zengshan Li, Yongqiang Tang, Jinsong Zhang, Lichun Wei, and Yongzhan Nie
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gastric cancer ,HER2 ,PD-1 ,Epstein-Barr virus ,immunotherapy ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundTrastuzumab-containing chemotherapy is the first-line treatment for advanced gastric cancer (GC) with HER2 positive. Although PD-1 inhibitors significantly improved the outcome of GC patient’s refractory to previous chemotherapy regimens, few studies explore the role of anti-PD-1 therapy overcomes resistance to trastuzumab plus chemotherapy in advanced Epstein-Barr Virus-associated gastric cancer (EBVaGC) with PD-L1 and HER2 positive.Case PresentationWe report a case of advanced EBVaGC in a 45-year-old man presenting with fatigue, dysphagia, and weight loss for several months. Initial endoscopy revealed a large tumor at the gastroesophageal junction. Computed tomography revealed GC accompanied by multiple lymph nodes and hepatic and pulmonary metastases. The immunohistochemistry indicated that HER-2 and PD-L1 were overexpressed, and tumor cells were positive for EBV-encoded small RNA (EBER) by in situ hybridization. Trastuzumab plus DCS was started as first-line chemotherapy with a PFS of 4 months and shifted to trastuzumab plus FOLFIRI or gemcitabine as second-/third-line therapy. After five-cycle nivolumab monotherapy, the patient received partial response and was treated with total radical gastrectomy plus sequential radiotherapy. He continued the postoperative immunotherapy over 30 cycles with a PFS of 28 months. Due to a new abdominal lymph node metastasis confirmed by PET-CT, he received toripalimab as the next-line treatment and achieved complete remission as the best objective response.SummaryWe presented an advanced HER2-positive EBVaGC patient with PD-L1 high expression, refractory to trastuzumab plus chemotherapy, and had a durable clinical benefit sequence with a single dose of the PD-1 inhibitor.
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- 2022
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65. Influence of sleep disruption on inflammatory bowel disease and changes in circadian rhythm genes
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Dan Wang, Houqing Yin, Xin Wang, Zequn Wang, Mengyuan Han, Quanzhao He, Jingjing Chen, Haocheng Xian, Bentuo Zhang, Xihua Wei, Baoxue Yang, Yan Pan, and Jun Li
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Inflammatory bowel disease ,Sleep disruption ,Circadian genes ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
According to clinical investigations, sleep disruption (SD) can influence the immune system and cause inflammatory bowel disease (IBD). However, the detailed effects of sleep on IBD development and progression have not been clarified. Here, we used dextran sulfate sodium (DSS) to induce colitis in mice, and then interfered with SD (day-time 8:00 a.m. to 5:00 p.m.) to explore the influence of sleep on colitis by analyzing colon length, mouse body weight, disease activity index (DAI) score, pathology detection, and infiltration of inflammatory cells with LCA immunohistochemistry analysis. Next, we detected the mRNA levels of circadian genes and related inflammatory factors, including Bmal1, CLOCK, Cry1, Cry2, Per1, Per2, Timeless, Rev-erbα, TNF-α, IL-6, and IFN-γ. Additionally, we conducted a sleep survey in IBD patients and collected colon lesion sites to detect the mRNA levels of those eight circadian genes and three inflammatory factors. We found that SD promoted the body weight decrease, increased inflammation as shown with pathological staining of the DSS animal model, and increased expression of the clock gene Cry2 in DSS-induced colitis mice. In IBD patients with active disease, the mRNA level of circadian genes Bmal1, Cry1, Cry2, and Rev-erbα in inflammatory tissues decreased significantly compared with non-inflammatory tissues.
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- 2022
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66. Indexing coordination of ecosystem and urban economic vitality in coastal cities: An observation in yangtze river delta
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Xiaojing Liu, Yan Pan, and Haiyan Zhou
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urban forest ,landscape indices ,urban ecosystem ,economic vitality ,GWR ,geographic technologies ,Environmental sciences ,GE1-350 - Abstract
Advanced geographic technologies provide an opportunity to understand the urban forest landscape and guide the governance of the urban ecosystem. However, only few studies stressed the importance of data techniques in understanding urban sustainability, especially urban forest landscape. Therefore, this study makes an analysis of urban forest resources in a city of Yangtze River Delta with the help of multi-source data techniques and further data analysis of different forest landscape pattern indices in the study area with the help of SPSS (Statistical Product and Service Solutions). The following conclusions are drawn: 1) According to the visual analysis, the spatial distribution of forest patches in the study area has a great difference. 2) All the seven landscape pattern indices are positively correlated with the distribution density of POI (Point of Interest), which represents the urban economic vitality. The correlation coefficients are NP (R2 = 0.3063), PD (R2 = 0.0079), ED (R2 = 0.3955), AREA (R2 = 0.5408), CONTIG (R2 = 0.0323), PAFRAC (R2 = 0.3662) and AI (R2 = 0.2014), respectively. This indicates that the higher the economic vitality is, the more fragmented and complex the urban forest patches are. 3) According to the geographically weighted regression model, the goodness of fit between the spatial distribution density of POI and NP, PD, ED, and AI reaches 0.804, 0.771, 0.634, and 0.619, respectively, and the explanatory power of the model is more than twice that of the corresponding linear regression model. The data illustrates that the correlation between economic vitality and urban forest landscape pattern indices has significant spatial heterogeneity.
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- 2022
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67. Recent Advances and Perspectives in Deep Learning Techniques for 3D Point Cloud Data Processing
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Zifeng Ding, Yuxuan Sun, Sijin Xu, Yan Pan, Yanhong Peng, and Zebing Mao
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3D data ,deep learning ,mesh ,point cloud ,voxel ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
In recent years, deep learning techniques for processing 3D point cloud data have seen significant advancements, given their unique ability to extract relevant features and handle unstructured data. These techniques find wide-ranging applications in fields like robotics, autonomous vehicles, and various other computer-vision applications. This paper reviews the recent literature on key tasks, including 3D object classification, tracking, pose estimation, segmentation, and point cloud completion. The review discusses the historical development of these methods, explores different model architectures, learning algorithms, and training datasets, and provides a comprehensive summary of the state-of-the-art in this domain. The paper presents a critical evaluation of the current limitations and challenges in the field, and identifies potential areas for future research. Furthermore, the emergence of transformative methodologies like PoinTr and SnowflakeNet is examined, highlighting their contributions and potential impact on the field. The potential cross-disciplinary applications of these techniques are also discussed, underscoring the broad scope and impact of these developments. This review fills a knowledge gap by offering a focused and comprehensive synthesis of recent research on deep learning techniques for 3D point cloud data processing, thereby serving as a useful resource for both novice and experienced researchers in the field.
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- 2023
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68. CXCL5 Promotes Acetaminophen-Induced Hepatotoxicity by Activating Kupffer Cells
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Kexin Qiu, Yan Pan, Weizhi Huang, Mengyuan Li, Xueqing Yan, Zixiong Zhou, and Jing Qi
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APAP ,KCs ,inflammation ,hepatocytes ,CXCL5 ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Kupffer cells (KCs) play a key part in the pathological process of acetaminophen (APAP)-induced acute liver injury (ALI), the leading cause of acute liver failure in the world. CXC motif chemokine ligand 5 (CXCL5) exerts proinflammatory effects in acute respiratory distress syndrome and arthritis. In the current study, we aim to reveal the effects of CXCL5 on the activation of KCs and the role of CXCL5 in the pathogenesis of APAP-induced hepatotoxicity. The in vivo study, conducted on mice intraperitoneally injected with APAP (300 mg/kg) to establish the ALI model and then treated with Anti-CXCL5 mAb at 30 min and 12 h after the APAP challenge, showed that CXCL5 expression significantly increased in injured livers, and Anti-CXCL5 mAb mitigated the degree of APAP-evoked ALI in mice which was proven through biochemicals and histological examination. Also, neutralization of CXCL5 had no significant effect on APAP metabolism in the liver but exhibited anti-inflammatory effects and ameliorated hepatocellular death in the injured liver. The in vitro data displayed that recombinant mouse CXCL5 treatment promoted APAP-induced cellular toxicity in primary hepatocytes co-cultured with KCs, compared with single-cultured hepatocytes. Consistent with the result, we found that the Anti-CXCL5 mAb gradient decreased LPS-induced expression of inflammatory cytokines in single-cultured KCs. Therefore, CXCL5 could stimulate KCs to produce inflammatory mediators, therefore damaging hepatocytes from APAP toxicity.
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- 2023
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69. Canopy-Height and Stand-Age Estimation in Northeast China at Sub-Compartment Level Using Multi-Resource Remote Sensing Data
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Xuebing Guan, Xiguang Yang, Ying Yu, Yan Pan, Hanyuan Dong, and Tao Yang
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object based ,pixel based ,canopy height ,GEDI ,RF algorithm ,Science - Abstract
Stand age is a significant factor when investigating forest resource management. How to obtain age data at a sub-compartment level on a large regional scale conveniently and in real time has become an urgent scientific challenge in forestry research. In this study, we established two strategies for stand-age estimation at sub-compartment and pixel levels, specifically object-based and pixel-based approaches. First, the relationship between canopy height and stand age was established based on field measurement data, which was achieved at the Mao’er Mountain Experimental Forest Farm in 2020 and 2021. The stand age was estimated using the relationship between the canopy height, the stand age, and the canopy-height map, which was generated from multi-resource remote sensing data. The results showed that the validation accuracy of the object-based estimation results of the stand age and the canopy height was better than that of the pixel-based estimation results, with a root mean squared error (RMSE) increase of 40.17% and 33.47%, respectively. Then, the estimated stand age was divided into different age classes and compared with the forest inventory data (FID). As a comparison, the object-based estimation results had better consistency with the FID in the region of the broad-leaved forests and the coniferous forests. In addition, the pixel-based estimation results had better accuracy in the mixed forest regions. This study provided a reference for estimating stand age and met the requirements for stand-age data at the pixel and sub-compartment levels for studies involving different forestry applications.
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- 2023
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70. Genome-wide identification and characterization of caffeoyl-coenzyme A O-methyltransferase genes related to the Fusarium head blight response in wheat
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Guang Yang, Wenqiu Pan, Ruoyu Zhang, Yan Pan, Qifan Guo, Weining Song, Weijun Zheng, and Xiaojun Nie
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CCoAOMT gene family ,Fusarium head blight (FHB) ,Expression pattern ,Regulation module ,Genetic variation ,Wheat ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background Lignin is one of the main components of the cell wall and is directly associated with plant development and defence mechanisms in plants, especially in response to Fusarium graminearum (Fg) infection. Caffeoyl-coenzyme A O-methyltransferase (CCoAOMT) is the main regulator determining the efficiency of lignin synthesis and composition. Although it has been characterized in many plants, to date, the importance of the CCoAOMT family in wheat is not well understood. Results Here, a total of 21 wheat CCoAOMT genes (TaCCoAOMT) were identified through an in silico genome search method and they were classified into four groups based on phylogenetic analysis, with the members of the same group sharing similar gene structures and conserved motif compositions. Furthermore, the expression patterns and co-expression network in which TaCCoAOMT is involved were comprehensively investigated using 48 RNA-seq samples from Fg infected and mock samples of 4 wheat genotypes. Combined with qRT-PCR validation of 11 Fg-responsive TaCCoAOMT genes, potential candidates involved in the FHB response and their regulation modules were preliminarily suggested. Additionally, we investigated the genetic diversity and main haplotypes of these CCoAOMT genes in bread wheat and its relative populations based on resequencing data. Conclusions This study identified and characterized the CCoAOMT family in wheat, which not only provided potential targets for further functional analysis, but also contributed to uncovering the mechanism of lignin biosynthesis and its role in FHB tolerance in wheat and beyond.
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- 2021
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71. Effect of perioperative use of parecoxib on chronic post-surgical pain in elderly patients after hepatectomy: a prospective randomized controlled study
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Xiaodong Ge, Yan Pan, Danfeng Jin, Ying Wang, and Shengjin Ge
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Parecoxib ,Chronic post-surgical pain ,Elderly ,Hepatectomy ,Multimodal analgesia ,Therapeutics. Pharmacology ,RM1-950 ,Toxicology. Poisons ,RA1190-1270 - Abstract
Abstract Background Chronic post-surgical pain (CPSP) has a negative impact on the recovery, quality of life, and physical functioning of elderly patients. This study aimed to test the superiority of parecoxib vs. placebo in preventing chronic post-hepatectomy pain in elderly patients under combined general-epidural anesthesia. Methods A total of 105 elderly patients undergoing hepatectomy under combined general-epidural anesthesia were randomized into the parecoxib or placebo group. The primary outcome was the proportion of patients with CPSP 3 months postoperatively. The secondary outcomes included the Short-Form McGill Pain Questionnaire score in CPSP-positive responders, acute pain intensity, postoperative analgesic demand, inflammatory markers change, and postoperative complications within 28 days. Results The parecoxib group provided a non-significant absolute 9.1% reduction in the rate of CPSP compared to the placebo group (P = 0.34). The average chronic pain visual analog scale in the parecoxib group was lower than that in the placebo group (P = 0.04). Significantly less moderate-to-severe acute pain at rest (P = 0.04) and with coughing (P 0.05) and postoperative complications (P = 0.65). Conclusions Parecoxib reduced the prevalence of CPSP in elderly patients after hepatectomy under combined general-epidural anesthesia from 44.4 to 35.3% with no statistical significance. Moreover, significantly alleviated CPSP intensity and improved acute pain management were observed. Trial registration This study was retrospectively registered in the Chinese Clinical Trial Registry (URL: http://www.chictr.org.cn/edit.aspx?pid=56961&htm=4 ) on August 3, 2020 ( ChiCTR-2,000,035,198 ).
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- 2021
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72. Transcriptome analysis insight into ethylene metabolism and pectinase activity of apricot (Prunus armeniaca L.) development and ripening
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Min Xu, Weiquan Zhou, Wenjuan Geng, Shirong Zhao, Yan Pan, Guoquan Fan, Shikui Zhang, Yatong Wang, and Kang Liao
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Medicine ,Science - Abstract
Abstract Ethylene metabolism is very important for climacteric fruit, and apricots are typical climacteric fruit. The activity of pectinase is closely related to fruit firmness, which further affects fruit quality. To better understand ethylene metabolism, pectinase activity and their molecular regulation mechanisms during the development and ripening of apricot fruit, ethylene metabolism, pectinase activity and the “Luntaibaixing” apricot fruit transcriptome were analyzed at different developmental stages. Ethylene metabolic precursors, enzyme activities and ethylene release increased during fruit development and ripening, with significant differences between the ripening stage and other stages (P
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- 2021
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73. Bile-derived exosome noncoding RNAs as potential diagnostic and prognostic biomarkers for cholangiocarcinoma
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Yan Pan, Shijie Shao, Hang Sun, Huafeng Zhu, and Haixing Fang
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bile ,cholangiocarcinoma ,exosome ,lncRNA ,microRNA ,biomarker ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundCholangiocarcinoma (CCA) is one of the most aggressive malignancies, lacking novel diagnostic and prognostic biomarkers. Exosome noncoding RNAs (ncRNA) were previously proposed as a potential source of biomarkers in several cancers. This study aimed to interpret the value of specific bile-derived ncRNA as predictors for early diagnosis and prognosis of CCA.MethodsWe recruited 100 patients who received endoscopic retrograde cholangiopancreatography at our hospital for bile duct obstruction due to CCA (n = 50) and biliary stone (n = 50). They were further divided into training set and validation set (3:2). A panel of CCA-specific ncRNAs including 5 miRNAs (PMID: 30165035) and 2 lncRNAs (PMID: 29050258) were detected in both serum and bile exosomes. The diagnostic accuracy was assessed using the area under the receiver operating characteristic curve. Logistic analysis was used to classify the potential predictors of CCA and further establish the diagnostic model. And the prognostic value of the ncRNAs was also assessed.ResultsExosomes were successfully collected from bile and serum. Exosomal miR-141-3p, miR-200a-3p, miR-200c-3p in serum and bile, as well as miR-200b-3p and ENST00000588480.1 in bile showed AUCs of >0.70 in the diagnosis of CCA. Bile exosomal miR-200c-3p displayed the best diagnostic value with the AUC of 0.87. The combination of serum CA19-9 into the model could increase the AUC to 0.906. Bile exosomal miR-200a-3p and miR-200c-3p were found to be independent predictors of CCA. Among exosomal ncRNAs in human bile and blood, 3 (serum and bile exosomal miR-200c-3p, bile exosomal miR-200a-3p) showed significant value in predicting cancer recurrence and 1 (serum exosomal miR-200c-3p) had great predictive ability of cancer death. High levels of serum exosomal miR-200c-3p showed unfavorable tumor-free survival and overall survival.ConclusionThe bile exosomal miR-200 family, particularly miR-200c-3p, was verified to be a potential biomarker for the early detection of CCA. The diagnostic ability of exosomal ncRNAs in human bile is better than that in blood. Moreover, high levels of bile exosomal miR-200a-3p, miR-200c-3p, and serum exosomal miR-200c-3p represented adverse clinical outcomes.
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- 2022
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74. Irradiation combined with PD-L1−/− and autophagy inhibition enhances the antitumor effect of lung cancer via cGAS-STING-mediated T cell activation
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Xinrui Zhao, Songling Hu, Liang Zeng, Xinglong Liu, Yimeng Song, Yuhong Zhang, Qianping Chen, Yang Bai, Jianghong Zhang, Haowen Zhang, Yan Pan, and Chunlin Shao
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microenvironment ,radiation biology ,immune response ,cancer ,Science - Abstract
Summary: Radiotherapy combined with immune checkpoint blockade has gradually revealed the superiority in the antitumor therapy; however, the contribution of host PD-L1 remains elusive. In this study, we found that the activation of CD8+ T cells was strikingly increased in both irradiated PD-L1-expressing primary tumor and distant non-irradiated syngeneic tumor in PD-L1-deficient mouse host, and thus enhanced radiation-induced antitumor abscopal effect (ATAE) by activating cGAS-STING pathway. Notably, the autophagy inhibitors distinctively promoted dsDNA aggregation in the cytoplasm and increased the release of cGAS-STING-regulated IFN-β from irradiated cells, which further activated bystander CD8+ T cells to release IFN-γ and contributed to ATAE. These findings revealed a signaling cascade loop that the cytokines released from irradiated tumor recruit CD8+ T cells that in turn act on the tumor cells with amplified immune responses in PD-L1-deficient host, indicating a potential sandwich therapy strategy of RT combined with PD-L1 blockage and autophagy inhibition.
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- 2022
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75. Integrated transcriptomics explored the cancer-promoting genes CDKN3 in esophageal squamous cell cancer
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Wanpeng Wang, Kai Liao, Hao Chun Guo, Suqin Zhou, Ran Yu, Yanyan Liu, Yan Pan, and Juan Pu
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Bioinformatics ,Integrated transcriptomics ,Module mining ,Esophageal squamous cell carcinoma (ESCC) ,Cyclin - dependent kinase inhibitor 3 (CDKN3) ,Surgery ,RD1-811 ,Anesthesiology ,RD78.3-87.3 - Abstract
Abstract Background and objectives Each individual studies is limited to multi-factors and potentially lead to a significant difference of results among them. The present study aim to explore the critical genes related to the development of Esophageal squamous cell carcinoma (ESCC) by integrated transcriptomics and to investigate the clinical significance by experimental validation. Methods Datasets of protein-coding genes expression which involved in ESCC were downloaded from Gene Expression Omnibus (GEO) database. The “Robustrankaggreg” package in language was used for data integration, and the different expression genes (DEGs) were identified based the cut-off criteria as follows: adjust p-value
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- 2021
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76. The Protective Effect of (-)-Tetrahydroalstonine against OGD/R-Induced Neuronal Injury via Autophagy Regulation
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Yumei Liao, Jun-Ya Wang, Yan Pan, Xueyi Zou, Chaoqun Wang, Yinghui Peng, Yun-Lin Ao, Mei Fong Lam, Xiaoshen Zhang, Xiao-Qi Zhang, Lei Shi, and Shiqing Zhang
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(-)-Tetrahydroalstonine ,cerebral ischemia ,OGD/R ,autophagy ,Akt/mTOR ,Organic chemistry ,QD241-441 - Abstract
Here, (-)-Tetrahydroalstonine (THA) was isolated from Alstonia scholaris and investigated for its neuroprotective effect towards oxygen–glucose deprivation/re-oxygenation (OGD/R)-induced neuronal damage. In this study, primary cortical neurons were pre-treated with THA and then subjected to OGD/R induction. The cell viability was tested by the MTT assay, and the states of the autophagy–lysosomal pathway and Akt/mTOR pathway were monitored by Western blot analysis. The findings suggested that THA administration increased the cell viability of OGD/R-induced cortical neurons. Autophagic activity and lysosomal dysfunction were found at the early stage of OGD/R, which were significantly ameliorated by THA treatment. Meanwhile, the protective effect of THA was significantly reversed by the lysosome inhibitor. Additionally, THA significantly activated the Akt/mTOR pathway, which was suppressed after OGD/R induction. In summary, THA exhibited promising protective effects against OGD/R-induced neuronal injury by autophagy regulation through the Akt/mTOR pathway.
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- 2023
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77. Association of systemic inflammation and body mass index with survival in patients with resectable gastric or gastroesophageal junction adenocarcinomas
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Xianchun Gao, Yanan Pan, Weili Han, Caie Hu, Chenchen Wang, Ling Chen, Yong Guo, Yupeng Shi, Yan Pan, Huahong Xie, Liping Yao, Jianjun Yang, Jianyong Zheng, Xiaohua Li, Xiaonan Liu, Liu Hong, Jipeng Li, Mengbin Li, Gang Ji, Zengshan Li, Jielai Xia, Qingchuan Zhao, Daiming Fan, Kaichun Wu, and Yongzhan Nie
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gastric cancer ,neutrophil-to-lymphocyte ratio ,body mass index ,prognosis ,systemic inflammation index ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Objective: The systemic inflammation index and body mass index (BMI) are easily accessible markers that can predict mortality. However, the prognostic value of the combined use of these two markers remains unclear. The goal of this study was therefore to evaluate the association of these markers with outcomes based on a large cohort of patients with gastric cancer. Methods A total of 2,542 consecutive patients undergoing radical surgery for gastric or gastroesophageal junction adenocarcinoma between 2009 and 2014 were included. Systemic inflammation was quantified by the preoperative neutrophil-to-lymphocyte ratio (NLR). High systemic inflammation was defined as NLR ≥ 3, and underweight was defined as BMI < 18.5 kg/m2. Results Among 2,542 patients, NLR ≥ 3 and underweight were common [627 (25%) and 349 (14%), respectively]. In the entire cohort, NLR ≥ 3 or underweight independently predicted overall survival (OS) [hazard ratio (HR): 1.236, 95% confidence interval (95% CI): 1.069–1.430; and HR: 1.600, 95% CI: 1.350–1.897, respectively] and recurrence-free survival (RFS) (HR: 1.230, 95% CI: 1.054–1.434; and HR: 1.658, 95% CI: 1.389–1.979, respectively). Patients with both NLR ≥ 3 and underweight (vs. neither) had much worse OS (HR: 2.445, 95% CI: 1.853–3.225) and RFS (HR: 2.405, 95% CI: 1.802–3.209). Furthermore, we observed similar results in subgroup analyses according to pathological stage, age, and postoperative chemotherapy. Conclusions Our results showed that preoperative elevated NLR and decreased BMI had a significant negative effect on survival. Underweight combined with severe inflammation could enhance prognostication. Taking active therapeutic measures to reduce inflammation and increase nutrition may help improve outcomes.
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- 2021
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78. Expression of nAChRα7 receptor in model rats with Parkinson’s disease dementia
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Yan Pan, Jing Zhu, Lina Cong, Yang Bai, Yaxin Ma, and Yue Yang
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nachrα7 ,parkinson's disease dementia ,parkinson's disease ,model rats ,Biotechnology ,TP248.13-248.65 - Abstract
To investigate the expression and role of nicotinic acetylcholine α7 subunit (nAChRα7) in the hippocampus of rats with Parkinson's disease (PD) and Parkinson's disease dementia (PDD). PD model was established with 6-hydroxydopa. Then, methyllycaconitine was further used to prepare a PDD model. The behavioral indexes and malondialdehyde (MDA) and superoxide dismutase (SOD) levels were measured. The mRNA level and protein level of nAChRα7 in hippocampus was detected by reverse transcription quantitative polymerase chain reaction (RT-qPCR) and Western-blot, respectively. The α7nAchR and NeuN protein was detected by immunofluorescence. Compared with the PD model group, the escape latency of the PDD model group was significantly prolonged while the times of crossing platforms was significantly reduced (p
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- 2021
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79. 56-Gbit/s PAM-4 Optical Signal Transmission Over 100-km SMF Enabled by TCNN Regression Model
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Jing Zhang, Lianshan Yan, Lin Jiang, Anlin Yi, Yan Pan, Wei Pan, and Bin Luo
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Convolutional neural network ,direct detection ,intensity modulation ,short-reach transmission link ,Applied optics. Photonics ,TA1501-1820 ,Optics. Light ,QC350-467 - Abstract
Due to the interaction between chromatic dispersion (CD) and direct detection, the CD induced power-fading effect has been considered as the key point to limit transmission rate and distance in intensity modulation direct-detection (IM/DD) systems. Besides, the performance of the IM/DD systems will be further affected by the bandwidth limitation and nonlinearity effect. In this paper, we propose a low complexity nonlinear equalizer (NLE) based on temporal convolutional neural network (TCNN) regression model which combines dilated convolutions with residual connections. Then, the performance of our proposed equalizer is experimentally demonstrated in 56-Gbit/s 4-level pulse amplitude modulation (PAM4) intensity modulation direct-detection system. The results show that the receiver sensitivity with the help of our TCNN equalizer can be improved about 1.5 dB and 3.5 dB compared to 2D-CNN and 1D-CNN equalizer under 70-km single mode fiber (SMF) transmission. Furthermore, the proposed equalizer can extend maximum transmission distance to 100 km at bit error rate threshold of 3.8 × 10−3.
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- 2021
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80. A Novel Neutrophil-Based Biomarker to Monitor Disease Activity and Predict Response to Infliximab Therapy in Patients With Ulcerative Colitis
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Zhou Zhou, Yinghui Zhang, Yan Pan, Xue Yang, Liangping Li, Caiping Gao, and Chong He
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ulcerative colitis ,biomarker ,inflammatory bowel disease ,neutrophil ,albumin ,neutrophil-to-albumin ratio ,Medicine (General) ,R5-920 - Abstract
BackgroundUlcerative colitis (UC) is characterized by refractory and recurrent mucosal inflammation, leading to a substantial healthcare burden. Diagnostic biomarkers predicting disease activity and treatment response remain elusive. To evaluate the application value of a novel neutrophil-based index (the neutrophil-to-albumin ratio, NAR) as a novel diagnostic biomarker in patients with UC and a predictive marker for disease activity and response to infliximab (IFX) therapy.MethodsClinical characteristics and laboratory parameters of enrolled subjects (patients with UC and healthy controls) were retrieved from the electronic medical record database of our hospital. Serum cytokine and fecal calprotectin levels were measured by enzyme-linked immunosorbent assay (ELISA). Mucosal expression levels of inflammatory agents were measured by quantitative RT-PCR (qRT-PCR).ResultsWe found that NAR, which had not yet been explored in UC, was significantly increased in patients with UC (n = 146) compared to that in controls (n = 133) (1.95 ± 0.41 vs. 1.41 ± 0.23, p < 0.0001). NAR showed a positive association with the disease activity and inflammatory load in patients with UC. Pre-treatment NAR was significantly lower in IFX responders than that in non-responders (2.18 ± 0.29 vs. 2.44 ± 0.21, p = 0.0118), showing a significant ability to discriminate initial responders from primary non-responders to IFX induction therapy (AUC = 0.7866, p = 0.0076). Moreover, pre-treatment NAR predicted postinduction serum IFX trough level.ConclusionOur study provides evidences to utilize NAR in the diagnosis, activity monitoring, and IFX response prediction in patients with UC.
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- 2022
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81. Deficiency of Integrin β4 Results in Increased Lung Tissue Stiffness and Responds to Substrate Stiffness via Modulating RhoA Activity
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Yinxiu Chi, Yu Chen, Wang Jiang, Wenjie Huang, Mingxing Ouyang, Lei Liu, Yan Pan, Jingjing Li, Xiangping Qu, Huijun Liu, Chi Liu, Linhong Deng, Xiaoqun Qin, and Yang Xiang
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integrinβ4 ,lung stiffness ,lysyl oxidase-like 4 ,collagen VI ,RhoA ,Biology (General) ,QH301-705.5 - Abstract
The interaction between extracellular matrix (ECM) and epithelial cells plays a key role in lung development. Our studies found that mice with conditional integrin β4 (ITGB4) knockout presented lung dysplasia and increased stiffness of lung tissues. In accordance with our previous studies regarding the functions of ITGB4 in bronchial epithelial cells (BECs), we hypothesize that the decreased ITGB4 expression during embryonic stage leads to abnormal ECM remodeling and increased tissue stiffness, thus impairing BECs motility and compromising lung development. In this study, we examined lung tissue stiffness in normal and ITGB4 deficiency mice using Atomic Force Microscopy (AFM), and demonstrated that ITGB4 deficiency resulted in increased lung tissue stiffness. The examination of ECM components collagen, elastin, and lysyl oxidase (LOX) family showed that the expression of type VI collagen, elastin and LOXL4 were significantly elevated in the ITGB4-deficiency mice, compared with those in normal groups. Airway epithelial cell migration and proliferation capacities on normal and stiff substrates were evaluated through video-microscopy and flow cytometry. The morphology of the cytoskeleton was detected by laser confocal microscopy, and RhoA activities were determined by fluorescence resonance energy transfer (FRET) microscopy. The results showed that migration and proliferation of ITGB4 deficiency cells were noticeably inhibited, along decreased cytoskeleton stabilization, and hampered RhoA activity, especially for cells cultured on the stiff substrate. These results suggest that decreased ITGB4 expression results in increased lung tissue stiffness and impairs the adaptation of bronchial epithelial cells to substrate stiffness, which may be related to the occurrence of broncho pulmonary dysplasia.
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- 2022
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82. Clinical Significance of Novel Neutrophil-Based Biomarkers in the Diagnosis and Prediction of Response to Infliximab Therapy in Crohn’s Disease
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Zhou Zhou, Yinghui Zhang, Xue Yang, Yan Pan, Liangping Li, Caiping Gao, and Chong He
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Crohn’s disease ,biomarker ,inflammatory bowel disease ,neutrophil ,albumin ,bilirubin ,Immunologic diseases. Allergy ,RC581-607 - Abstract
With the increasing incidence and prevalence, Crohn’s disease (CD) has become one of the most challenging diseases in both diagnosis and treatment of gastroenterology. Evaluation of the disease activity and mucosal healing guides clinical decisions regarding subsequent therapy for CD. In this study, we enrolled a total of 144 patients with CD and 239 healthy controls were enrolled. Clinical characteristics and laboratory parameters of enrolled subjects were retrieved from the electronic medical record database of our hospital. Serum cytokine levels were measured by enzyme-linked immunosorbent assay (ELISA). Mucosa expression levels of inflammatory agents were measured by quantitative RT-PCR (qRT-PCR). We identified two neutrophil-based indexes, the neutrophil-to-albumin ratio (NAR) and neutrophil-to-bilirubin ratio (NBR), both of which had not yet been explored in CD or UC. NAR and NBR were significantly increased in patients with CD compared to those in healthy controls, and both indexes showed significantly positive correlations with CD activity and inflammatory load. In note, NAR and NBR showed better performance than blood neutrophil percentage, serum albumin, or bilirubin alone in these scenarios. More importantly, both NAR and NBR discriminated CD patients who completely or partially responded to infliximab (IFX) induction therapy from those with primary non-response. Our observations suggest that NAR and NBR may serve as promising biomarkers in the diagnosis and prediction of response to IFX therapy in CD.
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- 2022
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83. MircroRNA Let-7a-5p in Airway Smooth Muscle Cells is Most Responsive to High Stretch in Association With Cell Mechanics Modulation
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Kang Wen, Kai Ni, Jia Guo, Bing Bu, Lei Liu, Yan Pan, Jingjing Li, Mingzhi Luo, and Linhong Deng
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ventilator-induced lung injury ,lung compliance ,airway smooth muscle cells ,microRNA ,let-7a-5p ,biomechanics ,Physiology ,QP1-981 - Abstract
Objective: High stretch (strain >10%) can alter the biomechanical behaviors of airway smooth muscle cells which may play important roles in diverse lung diseases such as asthma and ventilator-induced lung injury. However, the underlying modulation mechanisms for high stretch-induced mechanobiological responses in ASMCs are not fully understood. Here, we hypothesize that ASMCs respond to high stretch with increased expression of specific microRNAs (miRNAs) that may in turn modulate the biomechanical behaviors of the cells. Thus, this study aimed to identify the miRNA in cultured ASMCs that is most responsive to high stretch, and subsequently investigate in these cells whether the miRNA expression level is associated with the modulation of cell biomechanics.Methods: MiRNAs related to inflammatory airway diseases were obtained via bioinformatics data mining, and then tested with cultured ASMCs for their expression variations in response to a cyclic high stretch (13% strain) simulating in vivo ventilator-imposed strain on airways. Subsequently, we transfected cultured ASMCs with mimics and inhibitors of the miRNA that is most responsive to the high stretch, followed by evaluation of the cells in terms of morphology, stiffness, traction force, and mRNA expression of cytoskeleton/focal adhesion-related molecules.Results: 29 miRNAs were identified to be related to inflammatory airway diseases, among which let-7a-5p was the most responsive to high stretch. Transfection of cultured human ASMCs with let-7a-5p mimics or inhibitors led to an increase or decrease in aspect ratio, stiffness, traction force, migration, stress fiber distribution, mRNA expression of α-smooth muscle actin (SMA), myosin light chain kinase, some subfamily members of integrin and talin. Direct binding between let-7a-5p and ItgαV was also verified in classical model cell line by using dual-luciferase assays.Conclusion: We demonstrated that high stretch indeed enhanced the expression of let-7a-5p in ASMCs, which in turn led to changes in the cells’ morphology and biomechanical behaviors together with modulation of molecules associated with cytoskeletal structure and focal adhesion. These findings suggest that let-7a-5p regulation is an alternative mechanism for high stretch-induced effect on mechanobiology of ASMCs, which may contribute to understanding the pathogenesis of high stretch-related lung diseases.
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- 2022
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84. Effectiveness and safety of high dose clopidogrel plus aspirin in ischemic stroke patients with the single CYP2C19 loss-of-function allele: a randomized trial
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Hongliang Wu, Huiqun Song, Lianwei Dou, Bo Gao, Yan Pan, Mei Dong, Qi Chen, Jiazhen Li, Lixiang Song, Chuanyu Liu, Bing Li, and Wenzheng Chu
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Ischaemic stroke ,Intracranial stenosis ,Carotid stenosis ,CYP2C19 ,Clopidogrel ,Dual antiplatelet aggregation therapy ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Dual antiplatelet aggregation therapy leads to better outcomes in patients with carotid artery stenosis, intracranial artery stenosis, minor strokes, or transient ischaemic attacks. However, carriers of the CYP2C19 loss-of-function allele may not experience the desired effects. We attempted to increase the clopidogrel dose to determine whether it would improve the outcomes of stroke patients who carry a single loss-of-function allele. Methods We recruited 131 patients with minor ischaemic stroke, within less than 7 days of stroke onset and a CYP2C19 loss-of-function allele, who had moderate-to-severe cerebral artery stenosis. Patients were divided into the high dose group (clopidogrel 150 mg per day + aspirin 100 mg per day over 21 days.) and a normal dose group (clopidogrel 75 mg per day + aspirin 100 mg per day over 21 days). The reported outcomes included any vascular or major bleeding events as the primary and safety endpoints, respectively. Results One and six vascular events occurred in the high dose and normal dose groups during the 3-months follow-up period, respectively. However, no significant difference was found between the two groups when adjusted for history of diabetes (hazard ratio, 5482; 95% confidence interval, 0.660 to 45.543; P = 0.115). No major bleeding events occurred. Conclusions In patients with ischaemic stroke who had a single CYP2C19 loss-of-function allele and moderate to severe cerebral stenosis, fewer vascular events occurred within 3 months with high dose of clopidogrel and aspirin than with normal dose of clopidogrel and aspirin. However, the difference between the two groups was not significant. Trial registration Clinical study of clopidogrel in the treatment of patients with symptomatic moderate to severe cerebral artery stenosis with intermediate metabolites of CYP2C19, URL: http://www.chictr.org.cn/ . Unique identifier: ChiCTR1800017411 , 07/28/2018;
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- 2020
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85. Enhanced thermoelectric performance in GaxCo4Sb12.3-yTey skutterudites via suppressing bipolar effects for commercial application
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Jing Jiang, Rui Zhang, Chengcheng Yang, Yi Niu, Ting Zhou, Yan Pan, and Chao Wang
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Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
The n-type filled and doped skutterudites GaxCo4Sb12.3 and Ga0.2Co4Sb11.3Te composites with the well-distributed GaSb nanoinclusions are synthesized through the manipulating of metastable Ga fillers and enrichment of Sb by an in-situ method with a proper annealing procedure. Ga atoms can fill the icosahedron cages of skutterudite at high temperature, but at low temperature, they are driven out from the lattice voids and form the second phase of GaSb at grain boundaries. The presence of GaSb second phases reduces the thermal conductivity effectively. Te doping leads to a significant increase in carrier concentration of Ga0.2Co4Sb11.3Te, thus largely suppresses the bipolar effect of GaxCo4Sb12.3, resulting in a great enhancement in power factor. Moreover, Te doping induces mass and strain fluctuation, which decreases the lattice thermal conductivity further. Consequently, the maximum ZT is increased from 0.56 for Ga0.2Co4Sb12.3 at 573 K to 1.48 for Ga0.2Co4Sb11.3Te at 873 K, which is advantageous to improve the thermoelectric conversion efficiency for commercial application. Keywords: Thermoelectric, Skutterudite, Second phase, Bipolar effect
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- 2020
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86. TOB1 suppresses proliferation in K‐Ras wild‐type pancreatic cancer
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Yuru Bai, Lu Qiao, Ning Xie, Yan Li, Yongzhan Nie, Yan Pan, Yupeng Shi, Jinhai Wang, and Na Liu
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calcium pathway ,pancreatic cancer ,proliferation ,TOB1 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract TOB1 participates in various kinds of cancers. However, its role in pancreatic cancer has rarely been reported. In this study, we explored the expression and mechanisms of TOB1 in regulating the malignant phenotype of pancreatic cancer cells. TOB1 expression was determined by data mining and immunohistochemistry (IHC), and its localization was observed by immunofluorescence. CCK‐8 cell proliferation, colony formation, flow cytometric, transwell migration, and Western blot (WB) assays were used to examine how it impacts the malignant phenotype of pancreatic cancer. Furthermore, Foxa2 binding to TOB1 was tested by dual‐luciferase reporter assays, and RNA‐Seq was performed to identify signaling pathways. We found TOB1 was downregulated in pancreatic cancer tissues and was mainly located in the cytoplasm. TOB1 overexpression reduced the proliferation of K‐Ras wild‐type pancreatic cancer cells but made no difference to cell migration and invasion. Foxa2 overexpression significantly enhanced TOB1 promoter activity. Moreover, overexpressing TOB1 substantially enriched the calcium pathway in K‐Ras wild‐type pancreatic cancer cells. In conclusion, TOB1 may suppress the proliferation of K‐Ras wild‐type pancreatic cancer cells by regulating calcium pathway genes.
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- 2020
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87. Closed-Form Waveform Design for MIMO Radar Transmit Beampattern Synthesis via Integral Equality
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Yezi Ma, Ping Wei, Huaguo Zhang, and Yan Pan
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MIMO radar ,waveform design ,beampattern synthesis ,closed-form method ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Recently, due to the adequate use of waveform diversity, MIMO technology has been widely adopted, resulting in the waveform design for MIMO radar beampattern synthesis becoming a hot issue. However, most previous works regarding this problem optimize the waveform by introducing the global mean squared error (MSE) as the cost function, this requires large computation in applications. Different from these works, we adopt the idea from the shaped beampattern synthesis problem of 2-D array in this paper, that is, to form a flat-top beampattern in the desired area with small ripple. By considering the physical meaning of the flat-top beampattern from scratch, the MIMO waveform design problem is turned to designing the waveforms that make its beampattern integral (i.e. the energy transmitted by array) equal in the desired area. Subsequently, we put forth a closed-form method and give its mathematical proof. Numerical simulations and comparisons to known MIMO radar waveform design methods are provided to verify its effectiveness and outperformance.
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- 2020
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88. Coverage-guided differential testing of TLS implementations based on syntax mutation
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Yan Pan, Wei Lin, Yubo He, and Yuefei Zhu
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Medicine ,Science - Abstract
Transport layer security (TLS) protocol is the most widely used security protocol in modern network communications. However, protocol vulnerabilities caused by the design of the network protocol or its implementation by programmers emerge one after another. Meanwhile, various versions of TLS protocol implementations exhibit different behavioral characteristics. Researchers are attempting to find the differences in protocol implementations based on differential testing, which is conducive to discovering the vulnerabilities. This paper provides a solution to find the differences more efficiently by targeting the TLS protocol handshake process. The differences of different implementations during the fuzzing process, such as code coverage and response data, are taken to guide the mutation of test cases, and the seeds are mutated based on the TLS protocol syntax. In addition, the definition of duplicate discrepancies is theoretically explored to investigate the root cause of the discrepancies and to reduce the number of duplicate cases that are caused by the same reason. Besides, the necessary conditions for excluding duplicate cases are further analyzed to develop the deduplication strategy. The proposed method is developed based on open-source tools, i.e., NEZHA and TLS-diff. Three types of widely used TLS protocol implementations, i.e., OpenSSL, BoringSSL, and LibreSSL, are taken for experimental testing. The experimental results show that the proposed method can effectively improve the ability to find differences between different implementations. Under the same test scale or the same time, the amount of discrepancies increases by about 20% compared to TLS-diff, indicating the effectiveness of the deduplication strategy.
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- 2022
89. Preoperative Nutritional Status and Risk Factors Associated with Delayed Discharge in Geriatric Patients Undergoing Gastrectomy: A Single-Center Retrospective Study
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Xining Zhao, Jie Liu, Ying Wang, Yuying Yang, Yan Pan, and Shengjin Ge
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Biotechnology ,TP248.13-248.65 ,Biology (General) ,QH301-705.5 - Abstract
Objective. Preoperative malnutrition is an independent risk factor for postoperative complications and survival for gastric cancer patients. The study is aimed at investigating the prevalence of malnutrition, perioperative nutritional support, and the risk factors associated with delayed discharge of geriatric patients undergoing gastrectomy. Methods. A retrospective study of gastric cancer patients (age≥65) who underwent gastrectomy at Zhongshan Hospital from January 2018 to May 2020 was conducted. Clinical data, including demographic information, medical history, surgery-related factors, and perioperative nutritional management, were collected and analyzed. Postoperative complications were assessed according to the Clavien-Dindo grading system, and the prognostic nutritional index (PNI) was calculated. The risk factors affecting the prolongation of postoperative hospital stay were analyzed. Results. A total of 783 patients were reviewed. The overall frequency of malnutrition was 31.3% (249/783). The albumin, prealbumin, and hemoglobin levels were lower in the malnutrition group than in the well-nourished group. The proportion of patients who received preoperative total parenteral nutritional support in the malnutrition group was significantly higher than in the well-nourished group (12.4% vs. 3.7%, P0.05). The malnutrition group was associated with a higher rate of postoperative complications (P70 years (OR=1.216, 95% CI 1.048-1.411, P=0.010), operation time>180 min (OR=1.431, 95% CI 1.237-1.656, P
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- 2022
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90. Efficacy of High-Quality Nursing Service for the Patients during the Anesthesia Recovery Period: A Meta-Analysis
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Hui Li, Heng Wang, Yan Pan, Qian Huang, Xueping Li, Xiaoqi Zeng, and Li Zhou
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Biotechnology ,TP248.13-248.65 ,Biology (General) ,QH301-705.5 - Abstract
Background. To investigate the efficacy of high-quality nursing service for the patients during the anesthesia recovery period. Methods. We used the National Library of Medicine (PubMed), Cochrane Library of Excerpta Medica Database (EMBASE), China National Knowledge Infrastructure (CNKI), Wanfang, and very important person (VIP) databases for conducting a systematic literature study. We employed the fixed-effects model for evaluating the standardized mean differences (SMDs) with 95% confidence intervals (CIs). The sensitivity and publication bias were estimated for determining the efficacy of high-quality nursing services during the recovery period of anesthesia. Results. In our study, the result showed that the efficiency of recovery time of spontaneous respiration was significantly improved in the experimental group (SMD=−1.48, 95%CI=−1.62,−1.34). In this analysis, the extubation time of the experimental group was lower than that of the control group. In control group [WMD=−15.54, 95% CI (-21.24, -9.83), P
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- 2022
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91. Heterologous Expression of Recombinant Human Cytochrome P450 (CYP) in Escherichia coli: N-Terminal Modification, Expression, Isolation, Purification, and Reconstitution
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Tao Shang, Chee Mun Fang, Chin Eng Ong, and Yan Pan
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human cytochrome P450 ,heterologous expression ,Escherichia coli ,purification ,N-terminal modification ,Biotechnology ,TP248.13-248.65 - Abstract
Cytochrome P450 (CYP) enzymes play important roles in metabolising endogenous and xenobiotic substances. Characterisations of human CYP proteins have been advanced with the rapid development of molecular technology that allows heterologous expression of human CYPs. Among several hosts, bacteria systems such as Escherichia coli (E. coli) have been widely used thanks to their ease of use, high level of protein yields, and affordable maintenance costs. However, the levels of expression in E. coli reported in the literature sometimes differ significantly. This paper aims to review several contributing factors, including N-terminal modifications, co-expression with a chaperon, selections of vectors and E. coli strains, bacteria culture and protein expression conditions, bacteria membrane preparations, CYP protein solubilizations, CYP protein purifications, and reconstitution of CYP catalytic systems. The common factors that would most likely lead to high expression of CYPs were identified and summarised. Nevertheless, each factor may still require careful evaluation for individual CYP isoforms to achieve a maximal expression level and catalytic activity. Recombinant E. coli systems have been evidenced as a useful tool in obtaining the ideal level of human CYP proteins, which ultimately allows for subsequent characterisations of structures and functions.
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- 2023
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92. Mechanical Ventilation-Related High Stretch Mainly Induces Endoplasmic Reticulum Stress and Thus Mediates Inflammation Response in Cultured Human Primary Airway Smooth Muscle Cells
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Chongxin Yang, Jia Guo, Kai Ni, Kang Wen, Youyuan Qin, Rong Gu, Chunhong Wang, Lei Liu, Yan Pan, Jingjing Li, Mingzhi Luo, and Linhong Deng
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high stretch ,airway smooth muscle cells ,mRNA-sequencing ,endoplasmic reticulum stress ,airway inflammation ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Ventilator-induced lung injury (VILI) occurs in mechanically ventilated patients of respiratory disease and is typically characterized by airway inflammation. However, recent studies increasingly indicate that a major cause of VILI may be the excessive mechanical loading such as high stretch (>10% strain) on airway smooth muscle cells (ASMCs) due to mechanical ventilation (MV). Although ASMCs are the primary mechanosensitive cells in airways and contribute to various airway inflammation diseases, it is still unclear how they respond to high stretch and what mediates such a response. Therefore, we used whole genome-wide mRNA-sequencing (mRNA-Seq), bioinformatics, and functional identification to systematically analyze the mRNA expression profiles and signaling pathway enrichment of cultured human ASMCs exposed to high stretch (13% strain), aiming to screen the susceptible signaling pathway through which cells respond to high stretch. The data revealed that in response to high stretch, 111 mRNAs with count ≥100 in ASMCs were significantly differentially expressed (defined as DE-mRNAs). These DE-mRNAs are mainly enriched in endoplasmic reticulum (ER) stress-related signaling pathways. ER stress inhibitor (TUDCA) abolished high-stretch-enhanced mRNA expression of genes associated with ER stress, downstream inflammation signaling, and major inflammatory cytokines. These results demonstrate in a data-driven approach that in ASMCs, high stretch mainly induced ER stress and activated ER stress-related signaling and downstream inflammation response. Therefore, it suggests that ER stress and related signaling pathways in ASMCs may be potential targets for timely diagnosis and intervention of MV-related pulmonary airway diseases such as VILI.
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- 2023
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93. LncRNA CASC19 Enhances the Radioresistance of Nasopharyngeal Carcinoma by Regulating the miR-340-3p/FKBP5 Axis
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Hongxia Liu, Qianping Chen, Wang Zheng, Yuchuan Zhou, Yang Bai, Yan Pan, Jianghong Zhang, and Chunlin Shao
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nasopharyngeal carcinoma ,radioresistance ,lncRNA CASC19 ,miR-340-3p ,FKBP5 ,autophagy ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Radioresistance remains a serious obstacle encountered in the radiotherapy of nasopharyngeal carcinoma (NPC). Both mRNAs and non-coding RNAs (ncRNAs), including long ncRNA (lncRNA) and microRNA (miRNA), play essential roles in radiosensitivity. However, the comprehensive expression profiles and competing endogenous RNA (ceRNA) regulatory networks among lncRNAs, miRNAs, and mRNAs in NPC radioresistance are still bewildering. In this study, we performed an RNA-sequencing (RNA-seq) assay in the radioresistant NPC cells CNE2R and its parental cells CNE2 to identify the differentially expressed lncRNAs, miRNAs, and mRNAs. The ceRNA networks containing lncRNAs, miRNAs, and mRNAs were predicted on the basis of the Pearson correlation coefficients and authoritative miRanda databases. In accordance with bioinformatic analysis of the data of the tandem mass tag (TMT) assay of CNE2R and CNE2 cells and the gene chip assay of radioresistant NPC samples in pre- and post-radiotherapy, the radioresistance-related signaling network of lncRNA CASC19, miR-340-3p, and FKBP5 was screened and further verified using an RT-qPCR assay. CASC19 was positively associated with FKBP5 expression while negatively correlated with miR-340-3p, and the target binding sites of CASC19/miR-340-3p and miR-340-3p/FKBP5 were confirmed using a dual-luciferase reporter assay. Moreover, using an mRFP–GFP–LC3 maker, it was found that autophagy contributed to the radioresistance of NPC. MiR-340-3p inhibition or FKBP5 overexpression could rescue the suppression of autophagy and radioresistance induced by CASC19 knockdown in CNE2R cells. In conclusion, the CASC19/miR-340-3p/FKBP5 network may be instrumental in regulating NPC radioresistance by enhancing autophagy, which provides potential new therapeutic targets for NPC.
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- 2023
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94. The Study of a Novel Paeoniflorin-Converting Enzyme from Cunninghamella blakesleeana
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Yiheng Ye, Hairun Pei, Xueli Cao, Xueying Liu, Zhanghan Li, Biying Wang, Yan Pan, and Jimin Zheng
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biotransformation ,Cunninghamella blakesleeana ,paeoniflorin ,Organic chemistry ,QD241-441 - Abstract
Paeoniflorin is a glycoside compound found in Paeonia lactiflora Pall that is used in traditional herbal medicine and shows various protective effects on the cardio-cerebral vascular system. It has been reported that the pharmacological effects of paeoniflorin might be generated by its metabolites. However, the bioavailability of paeoniflorin by oral administration is low, which greatly limits its clinical application. In this paper, a paeoniflorin-converting enzyme gene (G6046, GenBank accession numbers: OP856858) from Cunninghamella blakesleeana (AS 3.970) was identified by comparative analysis between MS analysis and transcriptomics. The expression, purification, enzyme activity, and structure of the conversion products produced by this paeoniflorin-converting enzyme were studied. The optimal conditions for the enzymatic activity were found to be pH 9, 45 °C, resulting in a specific enzyme activity of 14.56 U/mg. The products were separated and purified by high-performance counter-current chromatography (HPCCC). Two main components were isolated and identified, 2-amino-2-p-hydroxymethyl-methyl alcohol-benzoate (tirs-benzoate) and 1-benzoyloxy-2,3-propanediol (1-benzoyloxypropane-2,3-diol), via UPLC-Q-TOF-MS and NMR. Additionally, paeoniflorin demonstrated the ability to metabolize into benzoic acid via G6046 enzyme, which might exert antidepressant effects through the blood–brain barrier into the brain.
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- 2023
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95. Prenatal Diagnosis and Genetic Analysis of 21q21.1–q21.2 Aberrations in Seven Chinese Pedigrees
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Huamei Hu, Rong Zhang, Yongyi Ma, Yanmei Luo, Yan Pan, Juchun Xu, Lupin Jiang, and Dan Wang
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21q21.1–21.2 duplication ,21q21.1–21.2 deletion ,SNP array ,NCAM2 ,prenatal diagnosis ,Genetics ,QH426-470 - Abstract
Background: Chromosomal aberrations contribute to human phenotypic diversity and disease susceptibility, but it is difficult to assess their pathogenic effects in the clinic. Therefore, it is of great value to report new cases of chromosomal aberrations associated with normal phenotypes or clinical abnormalities.Methods: This was a retrospective analysis of seven pedigrees that carried 21q21.1–q21.2 aberrations. G-banding and single-nucleotide polymorphism array techniques were used to analyze chromosomal karyotypes and copy number variations in the fetuses and their family members.Results: All fetuses and their family members showed normal karyotypes in seven pedigrees. Here, it was revealed that six fetuses carried maternally inherited 21q21.1–q21.2 duplications, ranging from 1 to 2.7 Mb, but none of the mothers had an abnormal phenotype. In one fetus, an 8.7 Mb deletion of 21q21.1–q21.2 was found. An analysis of the pedigree showed that the deletion was also observed in the mother, brother, and maternal grandmother, but no abnormal phenotypes were found.Conclusion: This study identified 21q21.1–q21.2 aberrations in Chinese pedigrees. The carriers of 21q21.1–q21.2 duplications had no clinical consequences based on their phenotypes, and the 21q21.1–q21.2 deletion was transmitted through three generations of normal individuals. This provides benign clinical evidence for pathogenic assessment of 21q21.1–q21.2 duplication and deletion, which was considered a variant of uncertain significance and a likely pathogenic variant in previous reports.
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- 2021
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96. Transient Unilateral Parotid Gland Swelling Following Upper Endoscopy
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Jin Yu Chieng, Ru Fah Then, Sharifah Intan Safuraa Shahabudin, and Yan Pan
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Public aspects of medicine ,RA1-1270 ,Medicine (General) ,R5-920 - Abstract
Transient parotid gland swelling could happen as complication after per oral endoscopy or intubation. We reported a 53-year-old man who developed transient unilateral parotid gland swelling following esophagogastroduodenoscopy (OGDS) with dilatation of achalasia cardia. The swelling of the parotid gland was transient and resolved completely without any intervention.
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- 2021
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97. Emergent Differential Organization of Airway Smooth Muscle Cells on Concave and Convex Tubular Surface
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Yang Jin, Lei Liu, Peili Yu, Feng Lin, Xiaohao Shi, Jia Guo, Bo Che, Yiyuan Duan, Jingjing Li, Yan Pan, Mingzhi Luo, and Linhong Deng
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3D printing ,curvature ,airway smooth muscle cells ,pattern formation ,phenotype ,Biology (General) ,QH301-705.5 - Abstract
Airway smooth muscle cells (ASMCs) exist in a form of helical winding bundles within the bronchial airway wall. Such tubular tissue provides cells with considerable curvature as a physical constraint, which is widely thought as an important determinant of cell behaviors. However, this process is difficult to mimic in the conventional planar cell culture system. Here, we report a method to develop chips with cell-scale tubular (concave and convex) surfaces from fused deposition modeling 3D printing to explore how ASMCs adapt to the cylindrical curvature for morphogenesis and function. Results showed that ASMCs self-organized into two distinctively different patterns of orientation on the concave and convex surfaces, eventually aligning either invariably perpendicular to the cylinder axis on the concave surface or curvature-dependently angled on the convex surface. Such oriented alignments of the ASMCs were maintained even when the cells were in dynamic movement during migration and spreading along the tubular surfaces. Furthermore, the ASMCs underwent a phenotype transition on the tubular (both concave and convex) surfaces, significantly reducing contractility as compared to ASMCs cultured on a flat surface, which was reflected in the changes of proliferation, migration and gene expression of contractile biomarkers. Taken together, our study revealed a curvature-induced pattern formation and functional modulation of ASMCs in vitro, which is not only important to better understanding airway smooth muscle pathophysiology, but may also be useful in the development of new techniques for airway disease diagnosis and therapy such as engineering airway tissues or organoids.
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- 2021
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98. GDF15 Contributes to Radioresistance by Mediating the EMT and Stemness of Breast Cancer Cells
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Xinrui Zhao, Xinglong Liu, Songling Hu, Yan Pan, Jianghong Zhang, Guomei Tai, and Chunlin Shao
- Subjects
bioinformatics analysis ,GDF15 ,breast cancer cells ,radioresistance ,EMT ,stem-like traits ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Radiotherapy is one of the conventional methods for the clinical treatment of breast cancer. However, radioresistance has an adverse effect on the prognosis of breast cancer patients after radiotherapy. In this study, using bioinformatic analysis of GSE59732 and GSE59733 datasets in the Gene Expression Omnibus (GEO) database together with the prognosis database of breast cancer patients after radiotherapy, the GDF15 gene was screened out to be related to the poor prognosis of breast cancer after radiotherapy. Compared with radiosensitive parental breast cancer cells, breast cancer cells with acquired radioresistance exhibited a high level of GDF15 expression and enhanced epithelial-to-mesenchymal transition (EMT) properties of migration and invasion, as well as obvious stem-like traits, including the increases of mammosphere formation ability, the proportion of stem cells (CD44+ CD24− cells), and the expressions of stem cell-related markers (SOX2, NANOG). Moreover, knockdown of GDF15 sensitized the radioresistance cells to irradiation and significantly inhibited their EMT and stem-like traits, indicating that GDF15 promoted the radioresistance of breast cancer by enhancing the properties of EMT and stemness. Conclusively, GDF15 may be applicable as a novel prognosis-related biomarker and a potential therapeutic target for breast cancer radiotherapy.
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- 2022
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99. Antimetastatic Effects of Ganoderma lucidum Polysaccharide Peptide on B16-F10-luc-G5 Melanoma Mice With Sleep Fragmentation
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Haocheng Xian, Jiayi Li, Yimeng Zhang, Ditian Li, Yinan Zhu, Siyan Li, Zhelun Tan, Zhibin Lin, Xuejun Li, and Yan Pan
- Subjects
Ganoderma lucidum polysaccharide peptide ,sleep fragmentation ,tumor metastasis ,proteomics ,gut microbiota ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Ganoderma lucidum (Lingzhi) polysaccharide peptide (GL-pp) is a component of the globally acknowledged traditional Chinese medicine Ganoderma lucidum; Ganoderma lucidum is known for its sedative, hypnotic, immune regulatory, antitumor, and other pharmacological effects. In recent years, sleep disorders have been linked to many diseases and human body disorders, including cancer. Some experimental studies in mice found that sleep fragmentation could promote tumor development and progression. However, effects on GL-pp on tumor metastasis under circumstances of sleep disorders have rarely been studied. Thus, in this study, we used mice with sleep fragmentation (SF) bearing B16-F10-luc-G5 melanoma tumors to investigate the effect of SF on melanoma metastasis. Furthermore, we investigated the antitumor and antimetastatic effects of GL-pp (80 mg/kg) in mice suffering from SF and bearing B16-F10-luc-G5. Then, whole proteomics was used to analyze the differences in protein expression in the lung tissue between SF mice bearing B16-F10-luc-G5 with and without GL-pp administration. High-throughput pyrosequencing of 16S rRNA was also used to analyze the impact of GL-pp on the gut microbiota composition in SF mice bearing B16-F10-luc-G5. Last, the effects of GL-pp on macrophage polarization and TNF-α serum levels were detected. Collectively, we found that SF significantly facilitated the B16-F10-luc-G5 melanoma tumor metastasis in mice, while GL-pp significantly reduced B16-F10-luc-G5 melanoma tumor metastasis under the condition of SF, in which proteomics and gut microbiota had been changed greatly.
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- 2021
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100. Targeting Mycobacterium tuberculosis response to environmental cues for the development of effective antitubercular drugs.
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Richard C Lavin, Calvin Johnson, Yong-Mo Ahn, Kyle M Kremiller, Matthew Sherwood, Jimmy S Patel, Yan Pan, Riccardo Russo, Nathan J MacGilvary, David Giacalone, Yuzo L Kevorkian, Matthew D Zimmerman, J Fraser Glickman, Joel S Freundlich, and Shumin Tan
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Sensing and response to environmental cues, such as pH and chloride (Cl-), is critical in enabling Mycobacterium tuberculosis (Mtb) colonization of its host. Utilizing a fluorescent reporter Mtb strain in a chemical screen, we have identified compounds that dysregulate Mtb response to high Cl- levels, with a subset of the hits also inhibiting Mtb growth in host macrophages. Structure-activity relationship studies on the hit compound "C6," or 2-(4-((2-(ethylthio)pyrimidin-5-yl)methyl)piperazin-1-yl)benzo[d]oxazole, demonstrated a correlation between compound perturbation of Mtb Cl- response and inhibition of bacterial growth in macrophages. C6 accumulated in both bacterial and host cells, and inhibited Mtb growth in cholesterol media, but not in rich media. Subsequent examination of the Cl- response of Mtb revealed an intriguing link with bacterial growth in cholesterol, with increased transcription of several Cl--responsive genes in the simultaneous presence of cholesterol and high external Cl- concentration, versus transcript levels observed during exposure to high external Cl- concentration alone. Strikingly, oral administration of C6 was able to inhibit Mtb growth in vivo in a C3HeB/FeJ murine infection model. Our work illustrates how Mtb response to environmental cues can intersect with its metabolism and be exploited in antitubercular drug discovery.
- Published
- 2021
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