100 results on '"Tuohy M"'
Search Results
52. The use of real-time polymerase chain reaction for rapid diagnosis of skeletal tuberculosis
- Author
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Kobayashi, N., Fraser, T. G., Thomas Bauer, Joyce, M. J., Hall, G. S., Tuohy, M. J., and Procop, G. W.
53. Fungal bioconversion of agricultural by-products to vanillin
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Thibault, Jf, Asther, M., Ceccaldi, Bc, Couteau, D., Delattre, M., Duarte, Jc, Faulds, C., Heldt-Hansen, Hp, Kroon, P., Lesage-Meessen, L., Micard, V., Renard, Cmgc, Tuohy, M., Hulle, S., Gary Williamson, Laboratoire de biochimie et technologie des glucides, Institut National de la Recherche Agronomique (INRA), Unité mixte de recherche de biotechnologie des champignons filamenteux, and Université de la Méditerranée - Aix-Marseille 2-Institut National de la Recherche Agronomique (INRA)-Université de Provence - Aix-Marseille 1
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additif alimentaire ,bioconversion ,arôme naturel ,aspergillus niger ,Ingénierie des aliments ,son de céréale ,champignon filamenteux ,résidu industriel ,[SDV.IDA]Life Sciences [q-bio]/Food engineering ,pulpe de betterave ,acide férulique ,Food engineering ,biotransformation ,pycnoporus cinnabarinus ,ComputingMilieux_MISCELLANEOUS ,vanilline - Abstract
International audience
54. A Rocking Table for Staining Electrophoretic Gels, Nitrocellulose Blots and Histological Slides
- Author
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Gray, I. D., primary, Tuohy, M., additional, and Williams, E. G., additional
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- 1986
- Full Text
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55. Pursuit-evasion using evolutionary algorithms in an immersive three-dimensional environment
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Eaton, M., primary, McMillan, M., additional, and Tuohy, M., additional
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56. An experimental in-vivo canine model for adult shunt infection
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Procop Gary, Tuohy Marion, Hall Geraldine, Dombrowski Stephen M, Brant Christine, Bayston Roger, and Luciano Mark G
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Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Detailed human studies of the mechanisms and development of shunt infection in real time are not possible, and we have developed a canine hydrocephalus model to overcome this. The intention of this pilot study was to show that the canine hydrocephalus model could be shunted using conventional "human" shunts, and that a shunt infection could be established so that further studies could then be planned. Methods Hydrocephalus was induced in seven dogs (Canis familiaris) by fourth ventricle obstruction. Four weeks later they were shunted using a Hakim Precision valve. Four of the dogs received shunts whose ventricular catheter had been inoculated with Staphylococcus epidermidis, and three were uninoculated controls. Four weeks after shunting the dogs were sacrificed and necropsy was performed. Removed shunts and tissue samples were examined microbiologically and isolates were subjected to detailed identification and genomic comparison. Results All the dogs remained well after shunting. Examination of removed shunt components revealed S. epidermidis in the brain and throughout the shunt system in the four inoculated animals, but in two of these Staphylococcus intermedius was also found. S. intermedius was also isolated from all three "negative" controls. There were slight differences between S. intermedius strains suggesting endogenous infection rather than cross- infection from a point source. Conclusion Shunt infection was established in the canine model, and had the experiment been extended beyond four weeks the typical microbiological, pathological and clinical features might have appeared. The occurrence of unplanned shunt infections in control animals due to canine normal skin flora reflects human clinical experience and underlines the usual source of bacteria causing shunt infection.
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- 2008
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57. A Rocking Table for Staining Electrophoretic Gels, Nitrocellulose Blots and Histological Slides
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Gray, I. D., Tuohy, M., and Williams, E. G.
- Abstract
A rocking table has been designed for gentle cyclic agitation of electrophoretic gels, nitrocellulose blots and microscope slides during staining (Fig. 1). It is particularly useful for long staining periods or when a small volume of staining solution is to be used. Even under conditions where gels or slides, laid flat, are not fully submerged when the staining vessel is horizontal, staining is consistently even and satisfactory. The apparatus is simple and inexpensive to construct, easily operated and quiet during use. It can be operated over a temperature range from - 20 to +60 C. The rocking speed is continuously variable from 4 to 14 cycles per minute. This allows precise control to avoid gross disturbance of the materials being stained, or splashing of the stain solution in different containers.
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- 1986
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58. KEY PERFORMANCE INDICATORS FOR SIMULATED VARIABLE-RATE IRRIGATION OF VARIABLE SOILS IN HUMID REGIONS.
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Hedley, C. B., Yule, I. J., Tuohy, M. P., and Vogeler, I.
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- *
IRRIGATION , *SOIL-Water Balance Model , *IRRIGATION scheduling , *ENERGY conservation , *WATER conservation , *SOIL leaching , *MATHEMATICAL models - Abstract
Decision support tools for precise irrigation scheduling are required to improve the efficiency of irrigation water use globally. This article presents a method for mapping soil variability and relating it to soil hydraulic properties so that soil management zones for variable-rate irrigation can be defined. A soil-water balance is used to schedule hypothetical irrigation events based on one blanket application of water to eliminate plant stress (uniform rate irrigation, or URI) and compares this to variable-rate irrigation (VRI), where irrigation is tailored to specific soil zone available water-holding capacity (TA WC) values. The key performance indicators, i.e., irrigation water use, drainage water loss, nitrogen leaching, energy use, irrigation water use efficiency (IWUE), and virtual water content, are used to compare URI and VRI at three contrasting sites using four years of climate data for a dairy pasture and maize crop and two years of climate data for a potato crop. Our research found that VRI saved 9% to 19% irrigation water, with accompanying energy saving. Loss of water by drainage, during the period of irrigation, was also reduced by 25% to 45% using VRI, which reduced the risk of nitrogen leaching. Virtual water content of these three primary products further illustrates potential benefits of VRI and shows that virtual water content of potato production used the least water per unit of dry matter production. [ABSTRACT FROM AUTHOR]
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- 2009
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59. Patient perspective on observation methods used in seclusion room in an Irish forensic mental health setting: A qualitative study.
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Shetty SR, Burke S, Timmons D, Kennedy HG, Tuohy M, and Terkildsen MD
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- Humans, Adult, Ireland, Female, Male, Middle Aged, Forensic Psychiatry standards, Psychiatric Nursing standards, Hospitals, Psychiatric, Mental Disorders therapy, Mental Disorders nursing, Video Recording, Young Adult, Patient Isolation, Qualitative Research
- Abstract
WHAT IS KNOWN ON THE SUBJECT?: Nurses' observation of patients in seclusion is essential to ensure patient safety. Patient observation in seclusion assists nurses in adhering to the requirements of mental health legislation and hospital policy. Direct observation and video monitoring are widely used in observing patients in seclusion. Coercive practices may cause distress to patient-staff relations. WHAT THE PAPER ADDS TO EXISTING KNOWLEDGE?: We add detailed information on specific observation methods in seclusion and compare them from the perspective of patients. Nurses communicating with patients ensures relational contact and that quality care is provided to patients even in the most distressed phase of their illness. Providing prior information to patients on observation methods in seclusion and the need for engaging patients in meaningful activities, while in seclusion are emphasized. Observation via camera and nurses' presence near the seclusion room made patients feel safe and gave a sense of being cared for in seclusion. Pixellating the video camera would give a sense of privacy and dignity. WHAT ARE THE IMPLICATIONS FOR PRACTICE?: The overarching goal is to prevent seclusion. However, when seclusion is used as a last resort to manage risk to others, it should be done in ways that recognize the human rights of the patient, in ways that are least harmful, and in ways that recognize and cater to patients' unique needs. A consistent approach to relational contact and communication is essential. A care plan must include patient's preferred approach for interacting while in seclusion to support individualized care provision. Viewing panels (small window on the seclusion door) are important in establishing two-way communication with the patient. Educating nurses to utilize them correctly helps stimulate relational contact and communication during seclusion to benefit patients. Engaging patients in meaningful activities when in seclusion is essential to keep them connected to the outside world. Depending on the patient's presentation in the seclusion room and their preferences for interactions, reading newspapers, poems, stories, or a book chapter aloud to patients, via the viewing panel could help ensure such connectedness. More focus should be placed on providing communication training to nurses to strengthen their communication skills in caring for individuals in challenging care situations. Patient education is paramount. Providing prior information to patients using a co-produced information leaflet might reduce their anxiety and make them feel safe in the room. When using cameras in the seclusion room, these should be pixelated to maintain patients' privacy. ABSTRACT: Introduction A lack of research investigating the specific role that various observational techniques may have in shaping the therapeutic relations in mental health care during seclusion warranted this study. Aim The aim of the study was to explore patients' experience of different methods of observation used while the patient was in seclusion. Method A retrospective phenomenological approach, using semi-structured interviews, ten patients' experiences of being observed in the seclusion room was investigated. Colaizzi's descriptive phenomenological method was followed to analyse the data. Results Communicating and engaging patients in meaningful activities can be achieved via the viewing panel. The camera was considered essential in monitoring behaviour and promoting a sense of safety. Pixelating the camera may transform patient view on privacy in seclusion. Discussion The mental health services must strive to prevent seclusion and every effort should be made to recognise the human rights of the patient. The study reveals numerous advantages when nurses actively engage in patient communication during the process of observation. Implications for Practice Different observation methods yield different benefits; therefore, staff education in using these methods is paramount. Empowering the patient with prior information on seclusion, engaging them in meaningful activities and proper documentation on patient engagement, supports the provision of individualised care in seclusion., (© 2023 The Authors. Journal of Psychiatric and Mental Health Nursing published by John Wiley & Sons Ltd.)
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- 2024
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60. Valorization of sugar beet pulp to value-added products: A review.
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Usmani Z, Sharma M, Diwan D, Tripathi M, Whale E, Jayakody LN, Moreau B, Thakur VK, Tuohy M, and Gupta VK
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- Biofuels, Biotechnology, Hydrolysis, Sugars, Beta vulgaris
- Abstract
The processing of sugar beet in the sugar production industry releases huge amounts of sugar beet pulp as waste which can be considered a valuable by-product as a source of cellulose, hemicellulose, and pectin. Valorization of sugar beet pulp into value added products occurs through acid hydrolysis, hydrothermal techniques, and enzymatic hydrolysis. Biochemical conversion of beet pulp into simple fermentable sugars for producing value added products occurs through enzymatic hydrolysis is a cost effective and eco-friendly process. While beet pulp has predominantly been used as a fodder for livestock, recent developments in its biotechnological valorization have unlocked its value as a feedstock in the production of biofuels, biohydrogen, biodegradable plastics, and platform chemicals such as lactic acid, citric acid, alcohols, microbial enzymes, single cell proteins, and pectic oligosaccharides. This review brings forward recent biotechnological developments made in the valorization of sugar beet pulp into valuable products., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2022
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61. Multicenter Clinical Evaluation of Vitek 2 Meropenem-Vaborbactam for Susceptibility Testing of Enterobacterales and Pseudomonas aeruginosa.
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Dwivedi HP, Franklin S, Chandrasekaran S, Garner O, Traczewski MM, Beasley D, Procop GW, Tuohy M, Wilson D, Bala Y, and Pincus DH
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- Boronic Acids, Humans, Meropenem pharmacology, Microbial Sensitivity Tests, Anti-Bacterial Agents pharmacology, Pseudomonas aeruginosa
- Abstract
The carbapenem/beta-lactamase inhibitor meropenem-vaborbactam (MEV) used to treat complicated urinary tract infections and pyelonephritis in adults was approved in 2017 by the U.S. Food and Drug Administration (FDA). Here, we evaluated Vitek 2 MEV (bioMérieux, Durham, NC) compared to the reference broth microdilution (BMD) method. Of 449 Enterobacterales isolates analyzed per FDA/CLSI breakpoints, the overall performance was 98.2% essential agreement (EA), 98.7% category agreement (CA), and 0% very major errors (VME) or major errors (ME). For 438 FDA intended-for-use Enterobacterales isolates, performance was 98.2% EA, 98.6% CA, and 0% VME or ME. Evaluable EA was 81.0%, but with only 42 on-scale evaluable results. Individual species demonstrated EA and CA rates of ≥90% without any VME or ME. When evaluated using European Committee on Antimicrobial Susceptibility Testing (EUCAST) breakpoints, overall Vitek 2 MEV performance for Enterobacterales and Pseudomonas aeruginosa demonstrated 97.3% EA, 99.2% CA, 2.3% VME, and 0.6% ME (after error resolution: 97.3% EA, 99.4% CA, 2.2% VME, and 0.4% ME) compared to the reference BMD method. Performance for P. aeruginosa included 92.2% EA, 97.4% CA, 0% VME, and 3.0% ME (after error resolution: 92.2% EA, 98.7% CA, 0% VME, and 1.5% ME). Performance for Enterobacterales included 98.2% EA, 99.6% CA, 3.0% VME, and 0.2% ME. Evaluable EA was 80.6% but was based on only 67 evaluable results. These findings support Vitek 2 MEV as an accurate automated system for MEV susceptibility testing of Enterobacterales and P. aeruginosa and could be an alternate solution to the manual-labor-intensive reference BMD method.
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- 2022
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62. Technological advances for improving fungal cellulase production from fruit wastes for bioenergy application: A review.
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Srivastava N, Srivastava M, Alhazmi A, Kausar T, Haque S, Singh R, Ramteke PW, Mishra PK, Tuohy M, Leitgeb M, and Gupta VK
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- Biofuels, Biomass, Fermentation, Fruit metabolism, Lignin metabolism, Technology, Cellulase metabolism
- Abstract
Fruit wastes can be imperative to elevate economical biomass to biofuels production process at pilot scale. Because of the renewable features, huge availability, having low lignin content organic nature and low cost; these wastes can be of much interest for cellulase enzyme production. This review provides recent advances on the fungal cellulase production using fruit wastes as a potential substrate. Also, the availability of fruit wastes, generation and processing data and their potential applications for cellulase enzyme production have been discussed. Several aspects, including cellulase and its function, solid-state fermentation, process parameters, microbial source, and the application of enzyme in biofuels industries have also been discussed. Further, emphasis has been made on various bottlenecks and feasible approaches such as use of nanomaterials, co-culture, molecular techniques, genetic engineering, and cost economy analysis to develop a low-cost based comprehensive technology for viable production of cellulase and its application in biofuels production technology., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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63. Multicenter evaluation of the VITEK MS matrix-assisted laser desorption/ionization-time of flight mass spectrometry system for identification of bacteria, including Brucella, and yeasts.
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Girard V, Monnin V, Giraud D, Polsinelli S, Caillé M, Procop GW, Tuohy M, Wilson D, Richter SS, Kiss K, Clem K, Tolli N, Bridon L, Bradford C, Blamey S, Li J, and Pincus DH
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- Bacteria chemistry, Bacteria classification, Brucella chemistry, Brucella classification, Brucella pathogenicity, Databases, Factual statistics & numerical data, Humans, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Yeasts chemistry, Yeasts classification, Bacteria isolation & purification, Brucella isolation & purification, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization instrumentation, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization standards, Yeasts isolation & purification
- Abstract
The use of matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometry has proven to be rapid and accurate for the majority of clinical isolates. Some gaps remain concerning rare, emerging, or highly pathogenic species, showing the need to continuously expand the databases. In this multicenter study, we evaluated the accuracy of the VITEK MS v3.2 database in identifying 1172 unique isolates compared to identification by DNA sequence analysis. A total of 93.6% of the isolates were identified to species or group/complex level. A remaining 5.2% of the isolates were identified to the genus level. Forty tests gave a result of no identification (0.9%) and 12 tests (0.3%) gave a discordant identification compared to the reference identification. VITEK MS is also the first MALDI-TOF MS system that is able to delineate the four members of the Acinetobacter baumannii complex at species level without any specific protocol or special analysis method. These findings demonstrate that the VITEK MS v3.2 database is highly accurate for the identification of bacteria and fungi encountered in the clinical laboratory as well as emerging species like Candida auris and the highly pathogenic Brucella species., (© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
- Published
- 2021
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64. Fungi populate deep-sea coral gardens as well as marine sediments in the Irish Atlantic Ocean.
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Marchese P, Garzoli L, Young R, Allcock L, Barry F, Tuohy M, and Murphy M
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- Animals, Atlantic Ocean, Biodiversity, Fungi genetics, Gardens, Geologic Sediments, Phylogeny, Anthozoa, Ascomycota
- Abstract
Fungi populate deep Oceans in extreme habitats characterized by high hydrostatic pressure, low temperature and absence of sunlight. Marine fungi are potential major contributors to biogeochemical events, critical for marine communities and food web equilibrium under climate change conditions and a valuable source of novel extremozymes and small molecules. Despite their ecophysiological and biotechnological relevance, fungal deep-sea biodiversity has not yet been thoroughly characterized. In this study, we describe the culturable mycobiota associated with the deepest margin of the European Western Continental Shelf: sediments sampled at the Porcupine Bank and deep-water corals and sponges sampled in the Whittard Canyon. Eighty-seven strains were isolated, belonging to 43 taxa and mainly Ascomycota. Ten species and four genera were detected for the first time in the marine environment and a possible new species of Arachnomyces was isolated from sediments. The genera Cladosporium and Penicillium were the most frequent and detected on both substrates, followed by Candida and Emericellopsis. Our results showed two different fungal communities: sediment-associated taxa which were predominantly saprotrophic and animal-associated taxa which were predominantly symbiotic. This survey supports selective fungal biodiversity in the deep North Atlantic, encouraging further mycological studies on cold water coral gardens, often overexploited marine habitats., (© 2021 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.)
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- 2021
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65. In Reply: Prepontine Shunting for Pseudotumor Cerebri in Previously Failed Shunt Patients: A 5-Year Analysis.
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White I, Tuohy M, Turner M, and Lee A
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- Cerebrospinal Fluid Shunts adverse effects, Humans, Neurosurgical Procedures, Prostheses and Implants, Ventriculoperitoneal Shunt, Pseudotumor Cerebri surgery
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- 2021
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66. A National Survey Identifying the Factors Associated With Cardiovascular Care Nurses' Perceived Knowledge of International Practice Guidelines: The First Step in the Development of an Implementation Strategy.
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McKee G, Hayes M, Caples N, Lowry A, Shine M, Hannon B, Cronin E, Lodge E, Hill L, Tuohy M, Gillen N, and Teehan S
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- Cross-Sectional Studies, Humans, Ireland, Surveys and Questionnaires, Nurses
- Abstract
Background: The implementation of international guidelines within everyday practice remains problematic, which can have a detrimental impact on quality of care delivered. This study aimed to ascertain the factors associated with clinical nurses' perceived knowledge of international guidelines., Methods: In this cross-sectional survey, nurses from 45 hospitals across Ireland were recruited. A previously validated anonymous questionnaire that assessed guideline knowledge, use, and barriers to implementation was used. Data were analyzed using SPSS 23 and logistic regression., Results: Of the 542 responses, 54% had used international guidelines relevant to their practice and 50% had consulted within the last year. Most nurses perceived that poor patient follow-up, lack of time and resources, poor clinical leadership, workload, long guidelines, and not understanding guideline detail were barriers to guideline use and implementation. Forty-five percent rated their perceived knowledge of guidelines as "low." Logistic regression identified that "high" knowledge levels were significantly associated with having read guidelines in the last year and their use with practice. In contrast, low knowledge of the guidelines was associated with perceptions that they were lengthy and not easy to use, lack of confidence to challenge colleagues when guidelines are not implemented, or not being able to influence current practice., Conclusions: This study identified the specific knowledge needs in this cohort of mainly basic grade registered nurses, with low perceived guideline knowledge. A whole unit or team approach led by nurse champions is needed to develop and establish practice and educational strategies that would increase the availability, application, and knowledge of guidelines within everyday practice., Competing Interests: The authors have no conflicts of interest to disclose., (Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2021
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67. Asymptomatic Patient Testing After 10:1 Pooling Using the Xpert Xpress SARS-CoV-2 Assay.
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Procop GW, Tuohy M, Ramsey C, Rhoads DD, Rubin BP, and Figler R
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- COVID-19 virology, False Negative Reactions, Feasibility Studies, Humans, Reverse Transcriptase Polymerase Chain Reaction, Sensitivity and Specificity, Viral Load, Asymptomatic Infections, COVID-19 diagnosis, COVID-19 Nucleic Acid Testing methods, Specimen Handling methods
- Abstract
Objectives: Pool testing for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) preserves testing resources at the risk of missing specimens through specimen dilution., Methods: To determine whether SARS-CoV-2 specimens would be missed after 10:1 pooling, we identified 10 specimens with midrange (ie, 25-34 cycles) and 10 with late (ie, >34-45 cycles) crossing threshold (Ct) values and tested these both neat and after 10:1 pooling. Final test results and Ct changes were compared., Results: Overall, 17 of 20 specimens that contained SARS-CoV-2 were detected after 10:1 pooling with the Xpert Xpress SARS-CoV-2 Assay (Cepheid), rendering an 85% positive percentage of agreement. All 10 of 10 specimens with an undiluted Ct in the mid-Ct range were detected after 10:1 pooling, in contrast to 7 of 10 with an undiluted Ct in the late-Ct range. The overall Ct difference between the neat testing and the 10:1 pool was 2.9 cycles for the N2 gene target and 3 cycles for the E gene target. The N2 gene reaction was more sensitive than the E gene reaction, detecting 16 of 20 positive specimens after 10:1 pooling compared with 9 of 20 specimens., Conclusions: An 85% positive percentage of agreement was achieved, with only specimens with low viral loads being missed following 10:1 pooling. The average impact on both reverse transcription polymerase chain reactions within this assay was about 3 cycles., (© American Society for Clinical Pathology, 2021. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2021
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68. Prepontine Shunting for Pseudotumor Cerebri in Previously Failed Shunt Patients: A 5-Year Analysis.
- Author
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White I, Tuohy M, Turner M, and Lee A
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- Adult, Female, Humans, Male, Reoperation, Retrospective Studies, Treatment Outcome, Young Adult, Cerebrospinal Fluid Shunts methods, Pseudotumor Cerebri surgery
- Abstract
Background: Shunting procedures have a high failure rate when used to treat pseudotumor cerebri (PTC) patients who have failed medical therapy. This failure is believed to be attributable to the collapsibility of the ventricular system when exposed to increased differential pressure gradients in the cerebral spinal fluid compartments caused by ventriculoperitoneal shunts (VPS)., Objective: To investigate whether prepontine/interpeduncular cistern shunting may be a reasonable alternative to VPS intervention in PTC patients with history of shunt failure. There have been no large series of cisternal-peritoneal shunt (CPS) patients in the PTC population., Methods: A retrospective review of 49 patients with placement of CPS for PTC with 2 failed prior shunting procedures was performed. Shunt survivability was based on shunt patency and resolution of ophthalmologic symptoms and cranial nerve deficits. All patients were followed for a minimum of 3 yr with serial ophthalmologic and neurosurgical evaluations., Results: At 3 yr, 44 of the 49 (88.9%) patients had working CPS. Three patients in this group had infections requiring complete shunt removal. Excluding infections, 44 of 46 (95.5%) shunts were functional at 3 yr. There were 3 small, asymptomatic hemorrhages that did not increase patient length of stay, and there were no catastrophic hemorrhages or strokes. There were also no abdominal complications related to shunt placement., Conclusion: CPS is a viable alternative to VPS in PTC patients who have failed traditional shunting methods to give these patients a persistent benefit of a working shunt. The procedure provides this solution with low operative and perioperative morbidity., (Copyright © 2020 by the Congress of Neurological Surgeons.)
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- 2021
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69. Measurement Reliability for Keratitis Morphology.
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Kriegel MF, Loo J, Farsiu S, Prajna V, Tuohy M, Kim KH, Valicevic AN, Niziol LM, Tan H, Ashfaq HA, Ballouz D, and Woodward MA
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- Adult, Aged, Bacteria isolation & purification, Corneal Stroma pathology, Eye Infections, Bacterial microbiology, Eye Infections, Fungal microbiology, Female, Fungi isolation & purification, Humans, Keratitis microbiology, Leukocyte Count, Limbus Corneae pathology, Male, Middle Aged, Prospective Studies, Reproducibility of Results, Slit Lamp Microscopy, Epithelium, Corneal pathology, Eye Infections, Bacterial pathology, Eye Infections, Fungal pathology, Keratitis pathology
- Abstract
Purpose: To evaluate the reliability of manual annotation when quantifying cornea anatomical and microbial keratitis (MK) morphological features on slit-lamp photography (SLP) images., Methods: Prospectively enrolled patients with MK underwent SLP at initial encounter at 2 academic eye hospitals. Patients who presented with an epithelial defect (ED) were eligible for analysis. Features, which included ED, corneal limbus (L), pupil (P), stromal infiltrate (SI), white blood cell (WBC) infiltration at the SI edge, and hypopyon (H), were annotated independently by 2 physicians on SLP images. Intraclass correlation coefficients (ICCs) were applied for reliability assessment; dice similarity coefficients (DSCs) were used to investigate the area overlap between readers., Results: Seventy-five MK patients with an ED received SLP. DSCs indicate good to fair annotation overlap between graders (L = 0.97, P = 0.80, ED = 0.94, SI = 0.82, H = 0.82, WBC = 0.83) and between repeat annotations by the same grader (L = 0.97, P = 0.81, ED = 0.94, SI = 0.85, H = 0.84, WBC = 0.82). ICC scores showed good intergrader (L = 0.98, P = 0.78, ED = 1.00, SI = 0.67, H = 0.97, WBC = 0.86) and intragrader (L = 0.99, P = 0.92, ED = 0.99, SI = 0.94, H = 0.99, WBC = 0.92) reliabilities. When reliability statistics were recalculated for annotated SI area in the subset of cases where both graders agreed WBC infiltration was present/absent, intergrader ICC improved to 0.91 and DSC improved to 0.86 and intragrader ICC remained the same, whereas DSC improved to 0.87., Conclusions: Manual annotation indicates usefulness of area quantification in the evaluation of MK. However, variability is intrinsic to the task. Thus, there is a need for optimization of annotation protocols. Future directions may include using multiple annotators per image or automated annotation software.
- Published
- 2020
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70. A Novel High-Throughput Screening Platform Identifies Itaconate Derivatives from Marine Penicillium antarcticum as Inhibitors of Mesenchymal Stem Cell Differentiation.
- Author
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Marchese P, Mahajan N, O'Connell E, Fearnhead H, Tuohy M, Krawczyk J, Thomas OP, Barry F, and Murphy MJ
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- Cells, Cultured, Chondrogenesis drug effects, Chondrogenesis physiology, Drug Discovery methods, Humans, Mesenchymal Stem Cells drug effects, Osteogenesis drug effects, Osteogenesis physiology, Regenerative Medicine, Cell Differentiation drug effects, High-Throughput Screening Assays methods, Penicillium chemistry, Small Molecule Libraries pharmacology, Succinates chemistry, Succinates pharmacology
- Abstract
Worldwide diffused diseases such as osteoarthritis, atherosclerosis or chronic kidney disease are associated with a tissue calcification process which may involve unexpected local stem cell differentiation. Current pharmacological treatments for such musculoskeletal conditions are weakly effective, sometimes extremely expensive and often absent. The potential to develop new therapies is represented by the discovery of small molecules modulating resident progenitor cell differentiation to prevent aberrant tissue calcification. The marine environment is a rich reserve of compounds with pharmaceutical potential and many novel molecules are isolated from macro and microorganisms annually. The potential of small molecules synthetized by marine filamentous fungi to influence the osteogenic and chondrogenic differentiation of human mesenchymal stem/stromal cells (hMSCs) was investigated using a novel, high-throughput automated screening platform. Metabolites synthetized by the marine-derived fungus Penicillium antarcticum were evaluated on the platform. Itaconic acid derivatives were identified as inhibitors of calcium elaboration into the matrix of osteogenically differentiated hMSCs and also inhibited hMSC chondrogenic differentiation, highlighting their capacity to impair ectopic calcification. Bioactive small molecule discovery is critical to address ectopic tissue calcification and the use of biologically relevant assays to identify naturally occurring metabolites from marine sources represents a strategy that can contribute to this effort.
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- 2020
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71. Nystagmus in the Diagnosis of Russell Diencephalic Syndrome.
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Tuohy M, Robertson PL, Rivas-Rodriguez F, and Trobe JD
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- Astrocytoma diagnosis, Brain pathology, Brain Neoplasms diagnosis, Diagnosis, Differential, Female, Humans, Infant, Infant, Newborn, Magnetic Resonance Imaging methods, Male, Nystagmus, Pathologic diagnosis, Syndrome, Astrocytoma complications, Brain Neoplasms complications, Nystagmus, Pathologic etiology
- Abstract
Russell diencephalic syndrome is a condition in which infants become emaciated in the setting of a decreased or normal caloric intake as the result of a hypothalamic astrocytoma. The diagnosis may be delayed if providers initially attribute the symptoms to a behavioral disorder. The detection of nystagmus, which is present in many patients, may be a critical diagnostic clue. The authors describe two patients in whom the discovery of nystagmus months after the onset of emaciation led to the diagnosis of Russell diencephalic syndrome. [J Pediatr Ophthalmol Strabismus. 2019;56:e79-e83.]., (Copyright 2019, SLACK Incorporated.)
- Published
- 2019
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72. Medication Burden for Patients With Bacterial Keratitis.
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Ballouz D, Maganti N, Tuohy M, Errickson J, and Woodward MA
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- Administration, Ophthalmic, Bacteria isolation & purification, Corneal Ulcer microbiology, Drug Prescriptions statistics & numerical data, Eye Infections, Bacterial microbiology, Female, Glucocorticoids economics, Glucocorticoids therapeutic use, Humans, Male, Middle Aged, Mydriatics economics, Mydriatics therapeutic use, Ophthalmic Solutions, Retrospective Studies, Anti-Bacterial Agents economics, Anti-Bacterial Agents therapeutic use, Corneal Ulcer drug therapy, Costs and Cost Analysis, Drug Costs, Drug Utilization statistics & numerical data, Eye Infections, Bacterial drug therapy
- Abstract
Purpose: To understand medication use and patient burden for treatment of bacterial keratitis (BK)., Methods: A retrospective study was conducted examining medical records of adult patients with BK in an academic cornea practice. Data collected included medications used in the treatment of BK, dosing of medications, and the number and total duration of clinical encounters. Costs of medications were estimated using the average wholesale pharmacy price. Linear regression analysis was used to investigate associations of medication use with patient demographics and corneal culture results and reported with beta estimates (β) and 95% confidence intervals (95% CIs)., Results: Forty-eight patients with BK (56% female) were studied. Patients were treated for a median of 54 days with 10 visits, 5 unique medications, 587 drops, and 7 prescriptions. The estimated median medication cost was $933 (interquartile range: $457-$1422) US dollars. Positive bacterial growth was significantly associated with more visits (β: 6.16, 95% CI: 1.75-10.6, P = 0.007), more days of treatment (β: 86.8, 95% CI: 10.8-163, P = 0.026), more prescribed medications (β: 2.86, 95% CI: 1.04-4.67, P = 0.003), and more doses of medications (β: 796, 95% CI: 818-1412, P = 0.012) compared with patients who did not undergo corneal scraping. Patients were prescribed 132 more drops of medication for every 10 years of older age (β: 132, 95% CI: 18.2-246, P = 0.024). Sex and income were not associated with medication burden or treatment length., Conclusions: Older patients and those with positive cultures incur the most medication burden in treatment of BK. Providers should be aware of medication usage and cost burden as it may affect compliance with treatment.
- Published
- 2019
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73. The Use of Bone Morphogenetic Protein in the Intervertebral Disk Space in Minimally Invasive Transforaminal Lumbar Interbody Fusion: 10-year Experience in 688 Patients.
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White IK, Tuohy M, Archer J, Schroeder GD, Vaccaro AR, and Mobasser JP
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- Adult, Aged, Aged, 80 and over, Female, Humans, Hyperostosis surgery, Intervertebral Disc drug effects, Lumbar Vertebrae drug effects, Male, Middle Aged, Pseudarthrosis surgery, Reoperation, Young Adult, Bone Morphogenetic Proteins pharmacology, Intervertebral Disc surgery, Lumbar Vertebrae surgery, Minimally Invasive Surgical Procedures, Spinal Fusion
- Abstract
Study Design: Retrospective Cohort., Objective: The objective of this study was to characterize one surgeon's experience over a 10-year period using rhBMP-2 in the disk space for minimally invasive transforaminal lumbar interbody fusion (MIS TLIF)., Summary of Background Data: MIS TLIF has been utilized as a technique for decreasing patients' immediate postoperative pain, decreasing blood loss, and shortened hospital stays. Effectiveness and complications of rhBMP-2's use in the disk space is limited because of its off-label status., Methods: Retrospective analysis of consecutive MIS TLIFs performed by senior author between 2004 and 2014. rhBMP-2 was used in the disk space in all cases. Patients were stratified based on the dose of rhBMP-2 utilized. Patients had 9 to 12 month computerized tomography scan to evaluate for bony fusion and continued follow-up for 18 months., Results: A total of 688 patients underwent a MIS TLIF. A medium kit of rhBMP-2 was utilized in 97 patients, and small kit was used in 591 patients. Fusion rate was 97.9% and this was not different between the 2 groups with 96/97 patients fusing in the medium kit group and 577/591 patients fusing in the small kit group. Five patients taken back to the operating room for symptomatic pseudoarthrosis, 4 reoperated for bony hyperostosis, and 10 radiographic pseudoarthroses that did not require reoperation. A statistically significant difference in the rate of foraminal hyperostosis was found when using a medium sized kit of rhBMP-2 was 4.12% (4/97 patients), compared with a small kit (0/591 patients, P=0.0004)., Conclusions: Utilization of rhBMP-2 in an MIS TLIF leads to high fusion rate (97.9%), with an acceptable complication profile. The development of foraminal hyperostosis is a rare complication that only affected 0.6% of patients, and seems to be a dose related complication, as this complication was eliminated when a lower dose of rhBMP-2 was utilized., Level of Evidence: Level IV.
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- 2019
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74. Fluoride And Caring for Children's Teeth (FACCT): Clinical Fieldwork Protocol.
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James P, Harding M, Beecher T, Parnell C, Browne D, Tuohy M, Kavanagh D, O'Mullane D, Guiney H, Cronin M, and Whelton H
- Abstract
Background: The reduction in dental caries seen between Irish national surveys of children's oral health in 1984 and 2002 was accompanied by an increase in the prevalence of enamel fluorosis. To minimise the risk of enamel fluorosis in Irish children, in 2007, the level of fluoride in drinking water was reduced from 0.8-1.0 ppm to 0.6-0.8 ppm fluoride. Recommendations on the use of fluoride toothpastes in young children were issued in 2002. Fluoride and Caring for Children's Teeth (FACCT) is a collaborative project between the Oral Health Services Research Centre, University College Cork and the Health Service Executive dental service, with funding from the Health Research Board. Aim: FACCT aims to evaluate the impact and the outcome of the change in community water fluoridation (CWF) policy (2007) on dental caries and enamel fluorosis in Irish schoolchildren, while also considering the change in policy on the use of fluoride toothpastes (2002). Methods/Design: A cross-sectional study with nested longitudinal study will be conducted in school year (SY) 2013-2014 by trained and calibrated dental examiners in primary schools in counties Dublin, Cork and Kerry for a representative sample of children born either prior to or post policy changes; age 12 (born 2001) and age 5, (born 2008). Five-year-olds will be followed-up when they are 8-year-olds (SY 2016-2017). The main explanatory variable will be fluoridation status of the children (lifetime exposure to CWF yes/no). Information about other explanatory variables will be collected via parent (of 5-, 8- and 12-year-olds) and child completed (8- and 12-year-olds only) questionnaires. The main outcomes will be dental caries (dmf/DMF Index), enamel fluorosis (Dean's Index) and oral health-related quality of life (OHRQoL). Multivariate regression analyses will be used to determine the impact and outcome of the change in CWF policy on oral health outcomes controlling for other explanatory variables., Competing Interests: No competing interests were disclosed., (Copyright: © 2018 James P et al.)
- Published
- 2018
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75. Cystoisospora belli Infection of the Gallbladder in Immunocompetent Patients: A Clinicopathologic Review of 18 Cases.
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Lai KK, Goyne HE, Hernandez-Gonzalo D, Miller KA, Tuohy M, Procop GW, Lamps LW, and Patil DT
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- Adolescent, Adult, Female, Humans, Isospora, Male, Middle Aged, Young Adult, Gallbladder Diseases parasitology, Gallbladder Diseases pathology, Isosporiasis pathology
- Abstract
Cystoisospora belli, previously known as Isospora belli, is an obligate intracellular coccidian parasite that is most often associated with gastrointestinal disease in immunocompromised patients. In this study, we detail the clinicopathologic features of 18 cases of Cystoisospora infection affecting the gallbladder in immunocompetent individuals and compare them with a control group. Each case was reviewed for cholecystitis (none, acute, chronic), epithelial disarray, presence of intraepithelial lymphocytes (none, rare [≤5 per 20 epithelial cells], present [>5 per 20 epithelial cells]), architectural distortion, intramucosal eosinophilia, and mural thickening/serositis. The mean age of patients with Cystoisospora infection was 33 years and the male to female ratio 1:4.3. Cholecystectomy was performed for biliary dyskinesia (n=7), abdominal pain (n=7), suspected cholelithiasis (n=5), and cholecystitis (n=3). In 2 cases, Cystoisospora was found in donor gallbladders resected at the time of liver transplantation. Each case was characterized by eosinophilic, oval or banana-shaped intraepithelial parasites within perinuclear parasitophorous vacuoles. Most cases showed epithelial disarray and minimal intraepithelial lymphocytosis. Of the 11 cases with an average follow-up of 15 months, none had evidence of disease related to Cystoisospora infection within the biliary tract or elsewhere in the gastrointestinal tract. We present the largest series of gallbladder cystoisosporiasis in immunocompetent patients to date. Cystoisospora infection is underrecognized in the gallbladders of immunocompetent patients, in part due to the subtle findings in routine cholecystectomy specimens. On the basis of the clinical follow-up, gallbladder cystoisosporiasis in immunocompetent individuals appears to be a self-limited infection.
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- 2016
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76. Use of a mannitol rich ensiled grass press juice (EGPJ) as a sole carbon source for polyhydroxyalkanoates (PHAs) production through high cell density cultivation.
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Cerrone F, Davis R, Kenny ST, Woods T, O'Donovan A, Gupta VK, Tuohy M, Babu RP, O'Kiely P, and O'Connor K
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- Batch Cell Culture Techniques methods, Cell Count methods, Bacteria metabolism, Carbon metabolism, Mannitol metabolism, Poaceae metabolism, Polyhydroxyalkanoates metabolism
- Abstract
This study demonstrates the use of a mannitol rich ensiled grass press juice (EGPJ) as a renewable carbon substrate for polyhydroxyalkanoates (PHA) production in shaking flask experiments and fed-batch stirred tank reactor cultivations. Fed-batch cultivations of Burkholderia sacchari IPT101 using EGPJ as sole carbon source produced 44.5 g/L CDW containing 33% polyhydroxybutyrate (PHB) in 36 h, while Pseudomonas chlororaphis IMD555 produced a CDW of 37 g/L containing 10% of medium chain length polyhydroxyalkanoates (mcl-PHA) in 34 h. PHB and mcl-PHA extracted from B. sacchari IPT101 and P. chlororaphis IMD555, grown on EGPJ, had a molecular weight of 548 kg/mol and 115.4 kg/mol, respectively. While mcl-PHA can be produced from EGPJ, PHB production is more interesting as there is a 4-fold higher volumetric productivity compared to mcl-PHA., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
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- 2015
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77. Skin Sterility After Application of a Vapocoolant Spray Part 2.
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Mlynek K, Lyahn H, Richards B, Schleicher W, Bassiri Gharb B, Procop G, Tuohy M, and Zins J
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- Adult, Bacteria isolation & purification, Cold Temperature, Female, Humans, Male, Middle Aged, Nebulizers and Vaporizers, Prospective Studies, Young Adult, Skin microbiology, Sterilization methods
- Abstract
Introduction: Refrigerant sprays have been used for pain relief at the time of minor office procedures. However, their sterility remains in question. This study investigates the microbiologic effect of this vapocoolant when sprayed after 70 % isopropyl alcohol skin preparation., Materials and Methods: In 50 healthy volunteers, three skin culture samples were collected: Group 1 prior to alcohol application; Group 2 after preparation with alcohol, and Group 3 after preparation with alcohol followed with vapocoolant spray. Samples were cultured in a blinded fashion and analyzed after 5 days of incubation. Gram staining was performed when cultures were positive., Results: Bacterial growth was found in 98 % of samples prior to any skin preparation. This was reduced to 54 % after alcohol use (Group 2). Spraying with the skin refrigerant further reduced bacterial growth to 46 % (Group 3). The results showed a significant reduction in the number of positive bacterial cultures following skin preparation with alcohol and when alcohol prep was followed by vapocoolant spray (p < 0.001) compared to initial cultures. No statistical difference was observed between Groups 2 and 3 (p = 0.74)., Conclusions: The use of the vapocoolant spray does not compromise the sterility of the skin following alcohol prep. Both 70 % isopropyl alcohol antiseptic preparation and skin preparation followed by vapocoolant spray significantly reduce skin colonization when compared to unprepared skin (p < 0.001).
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- 2015
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78. Unexpected challenges in treating multidrug-resistant Gram-negative bacteria: resistance to ceftazidime-avibactam in archived isolates of Pseudomonas aeruginosa.
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Winkler ML, Papp-Wallace KM, Hujer AM, Domitrovic TN, Hujer KM, Hurless KN, Tuohy M, Hall G, and Bonomo RA
- Subjects
- Fosfomycin pharmacology, Gram-Negative Bacteria, Humans, Microbial Sensitivity Tests, Anti-Bacterial Agents pharmacology, Azabicyclo Compounds pharmacology, Ceftazidime pharmacology, Pseudomonas aeruginosa drug effects
- Abstract
Pseudomonas aeruginosa is a notoriously difficult-to-treat pathogen that is a common cause of severe nosocomial infections. Investigating a collection of β-lactam-resistant P. aeruginosa clinical isolates from a decade ago, we uncovered resistance to ceftazidime-avibactam, a novel β-lactam/β-lactamase inhibitor combination. The isolates were systematically analyzed through a variety of genetic, biochemical, genomic, and microbiological methods to understand how resistance manifests to a unique drug combination that is not yet clinically released. We discovered that avibactam was able to inactivate different AmpC β-lactamase enzymes and that blaPDC regulatory elements and penicillin-binding protein differences did not contribute in a major way to resistance. By using carefully selected combinations of antimicrobial agents, we deduced that the greatest barrier to ceftazidime-avibactam is membrane permeability and drug efflux. To overcome the constellation of resistance determinants, we show that a combination of antimicrobial agents (ceftazidime/avibactam/fosfomycin) targeting multiple cell wall synthetic pathways can restore susceptibility. In P. aeruginosa, efflux, as a general mechanism of resistance, may pose the greatest challenge to future antibiotic development. Our unexpected findings create concern that even the development of antimicrobial agents targeted for the treatment of multidrug-resistant bacteria may encounter clinically important resistance. Antibiotic therapy in the future must consider these factors., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
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79. Evaluation of the Verigene Gram-positive blood culture nucleic acid test for rapid detection of bacteria and resistance determinants.
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Wojewoda CM, Sercia L, Navas M, Tuohy M, Wilson D, Hall GS, Procop GW, and Richter SS
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- Gram-Positive Bacteria genetics, Humans, Time Factors, Bacteremia diagnosis, Bacteremia microbiology, Bacteriological Techniques methods, Drug Resistance, Bacterial, Gram-Positive Bacteria classification, Gram-Positive Bacteria isolation & purification, Molecular Diagnostic Techniques methods
- Abstract
Rapid identification of pathogens from blood cultures can decrease lengths of stay and improve patient outcomes. We evaluated the accuracy of the Verigene Gram-positive blood culture (BC-GP) nucleic acid test for investigational use only (Nanosphere, Inc., Northbrook, IL) for the identification of Gram-positive bacteria from blood cultures. The detection of resistance genes (mecA in Staphylococcus aureus and Staphylococcus epidermidis and vanA or vanB in Enterococcus faecium and Enterococcus faecalis) by the BC-GP assay also was assessed. A total of 186 positive blood cultures (in BacT/Alert FA bottles) with Gram-positive cocci observed with Gram staining were analyzed using the BC-GP assay. The BC-GP results were compared with the identification and susceptibility profiles obtained with routine methods in the clinical laboratory. Discordant results were arbitrated with additional biochemical, cefoxitin disk, and repeat BC-GP testing. The initial BC-GP organism identification was concordant with routine method results for 94.6% of the blood cultures. Only 40% of the Streptococcus pneumoniae identifications were correct. The detection of the mecA gene for 69 blood cultures with only S. aureus or S. epidermidis was concordant with susceptibility testing results. For 3 of 6 cultures with multiple Staphylococcus spp., mecA detection was reported but was correlated with oxacillin resistance in a species other than S. aureus or S. epidermidis. The detection of vanA agreed with susceptibility testing results for 45 of 46 cultures with E. faecalis or E. faecium. Comparison of the mean times to results for each organism group showed that BC-GP results were available 31 to 42 h earlier than phenotypic identifications and 41 to 50 h earlier than susceptibility results.
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- 2013
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80. Interobserver variability and feasibility of polymerase chain reaction-based assay in distinguishing ischemic colitis from Clostridium difficile colitis in endoscopic mucosal biopsies.
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Wiland HO 4th, Procop GW, Goldblum JR, Tuohy M, Rybicki L, and Patil DT
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- Bacterial Toxins analysis, Biopsy, Clostridioides difficile genetics, Clostridium Infections pathology, Colitis, Ischemic pathology, Enterocolitis, Pseudomembranous pathology, Enterotoxins analysis, Female, Humans, Male, Middle Aged, Observer Variation, Polymerase Chain Reaction methods, Reproducibility of Results, Sensitivity and Specificity, Clostridium Infections diagnosis, Colitis, Ischemic diagnosis, Enterocolitis, Pseudomembranous diagnosis, Intestinal Mucosa pathology
- Abstract
Polymerase chain reaction (PCR)-based assays using stool samples are currently the most effective method of detecting Clostridium difficile. This study examines the feasibility of this assay using mucosal biopsy samples and evaluates the interobserver reproducibility in diagnosing and distinguishing ischemic colitis from C difficile colitis. Thirty-eight biopsy specimens were reviewed and classified by 3 observers into C difficile and ischemic colitis. The findings were correlated with clinical data. PCR was performed on 34 cases using BD GeneOhm C difficile assay. The histologic interobserver agreement was excellent (κ= 0.86) and the agreement between histologic and clinical diagnosis was good (κ = 0.84). All 19 ischemic colitis cases tested negative (100% specificity) and 3 of 15 cases of C difficile colitis tested positive (20% sensitivity). C difficile colitis can be reliably distinguished from ischemic colitis using histologic criteria. The C difficile PCR test on endoscopic biopsy specimens has excellent specificity but limited sensitivity.
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- 2013
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81. Cost-effectiveness of laboratory monitoring for management of HIV treatment in sub-Saharan Africa: a model-based analysis.
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Hamers RL, Sawyer AW, Tuohy M, Stevens WS, Rinke de Wit TF, and Hill AM
- Subjects
- Acquired Immunodeficiency Syndrome drug therapy, Acquired Immunodeficiency Syndrome epidemiology, Africa South of the Sahara epidemiology, Anti-HIV Agents therapeutic use, CD4 Lymphocyte Count economics, Cost-Benefit Analysis, Female, Humans, Life Expectancy, Male, Quality-Adjusted Life Years, Sentinel Surveillance, Treatment Failure, Viral Load economics, Acquired Immunodeficiency Syndrome economics, Anti-HIV Agents economics, Clinical Laboratory Techniques economics, Markov Chains
- Abstract
Objective: To compare the cost-effectiveness of three different strategies for long-term monitoring of antiretroviral therapy (ART) failure and regimen switching in sub-Saharan Africa: a symptom-based approach, or monitoring of either CD4 cell counts or plasma viral load (pVL)., Design: Markov model., Setting and Participants: Hypothetical HIV-infected adult population who began first-line ART and subsequently had up to 6 years of follow-up., Main Outcome Measures: Total cost, life expectancy and incremental cost-effectiveness ratio (ICER)., Results: A symptom-based approach yielded a life expectancy of 64.0 months at a total cost of US$ 4028 per person. All laboratory-based strategies, at testing intervals of 6 or 12 months, were cost-saving and improved life expectancy, compared with a symptom-based approach. The life-expectancy gain was larger for pVL than for CD4 strategies at 6-monthly (2.3 and 0.9 months, respectively) and 12-monthly testing (2.0 and 0.8 months, respectively). Cost-savings of 6-monthly pVL or CD4 testing were similar (US$ 630 and 621, respectively), whereas 12-monthly CD4 cell counts were more cost-saving than 12-monthly pVL (US$ 1132 and 880, respectively). Testing every 12 months - rather than every 6 months - decreased the ICER by 102% for CD4 cell count and 67% for pVL. These findings were robust to a wide range of deterministic sensitivity analyses, but were sensitive to the specificity and costs of diagnostic tests., Conclusion: Additional diagnostic costs are balanced by cost-savings from avoiding unnecessary switching due to misdiagnosis of ART failure. Routine pVL monitoring may be preferred as a replacement for CD4 cell counts because of its additional public-health advantages in preventing drug-resistance, supporting adherence and reducing HIV transmission., (© 2012 Wolters Kluwer Health | Lippincott Williams & Wilkins)
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- 2012
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82. Influence of unit operations on the levels of polyacetylenes in minimally processed carrots and parsnips: An industrial trial.
- Author
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Koidis A, Rawson A, Tuohy M, and Brunton N
- Abstract
Carrots and parsnips are often consumed as minimally processed ready-to-eat convenient foods and contain in minor quantities, bioactive aliphatic C17-polyacetylenes (falcarinol, falcarindiol, falcarindiol-3-acetate). Their retention during minimal processing in an industrial trial was evaluated. Carrot and parsnips were prepared in four different forms (disc cutting, baton cutting, cubing and shredding) and samples were taken in every point of their processing line. The unit operations were: peeling, cutting and washing with chlorinated water and also retention during 7days storage was evaluated. The results showed that the initial unit operations (mainly peeling) influence the polyacetylene retention. This was attributed to the high polyacetylene content of their peels. In most cases, when washing was performed after cutting, less retention was observed possibly due to leakage during tissue damage occurred in the cutting step. The relatively high retention during storage indicates high plant matrix stability. Comparing the behaviour of polyacetylenes in the two vegetables during storage, the results showed that they were slightly more retained in parsnips than in carrots. Unit operations and especially abrasive peeling might need further optimisation to make them gentler and minimise bioactive losses., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2012
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83. Effect of ultrasound and blanching pretreatments on polyacetylene and carotenoid content of hot air and freeze dried carrot discs.
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Rawson A, Tiwari BK, Tuohy MG, O'Donnell CP, and Brunton N
- Subjects
- Air, Food Handling methods, Food Technology methods, Heating methods, Polyynes radiation effects, Radiation Dosage, Carotenoids analysis, Daucus carota chemistry, Daucus carota radiation effects, Desiccation methods, Freeze Drying, Polyynes chemistry, Sonication methods
- Abstract
The effect of ultrasound and blanching pretreatments on polyacetylene (falcarinol, falcarindiol and falcarindiol-3-acetate) and carotenoid compounds of hot air and freeze dried carrot discs was investigated. Ultrasound pretreatment followed by hot air drying (UPHD) at the highest amplitude and treatment time investigated resulted in higher retention of polyacetylenes and carotenoids in dried carrot discs than blanching followed by hot air drying. Freeze dried samples had a higher retention of polyacetylene and carotenoid compounds compared to hot air dried samples. Color parameters were strongly correlated with carotenoids (p<0.05). This study shows that ultrasound pretreatment is a potential alternative to conventional blanching treatment in the drying of carrots., (Copyright © 2011 Elsevier B.V. All rights reserved.)
- Published
- 2011
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84. Purification of exo-1,3-beta-glucanase, a new extracellular glucanolytic enzyme from Talaromyces emersonii.
- Author
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O'Connell E, Piggott C, and Tuohy M
- Subjects
- Chromatography, High Pressure Liquid, Enzyme Inhibitors metabolism, Enzyme Stability, Glucan 1,3-beta-Glucosidase chemistry, Glucans, Gluconates metabolism, Hydrogen-Ion Concentration, Kinetics, Lactones metabolism, Molecular Weight, Polysaccharides metabolism, Substrate Specificity, Temperature, Glucan 1,3-beta-Glucosidase isolation & purification, Glucan 1,3-beta-Glucosidase metabolism, Talaromyces enzymology
- Abstract
The moderately thermophilic aerobic ascomycete Talaromyces emersonii secretes, under selected growth conditions, several β-glucan hydrolases including an exo-1,3-β-glucanase. This enzyme was purified to apparent homogeneity in order to characterise its biochemical properties and investigate hydrolysis of different β-glucans, including laminaran, a 1,3-β-glucan from brown algae. The native enzyme is monomeric with a molecular mass of ~40 kDa and a pI value of 4.3, and is active over broad ranges of pH and temperature, with optimum activity observed at pH 5.4 and 65 °C. At pH 5.0, the enzyme displays strict specificity for laminaran (apparent K(m) 1.66 mg mL⁻¹; V(max) 7.69 IU mL⁻¹) and laminari-oligosaccharides and did not yield activity against 1,4-β-glucans, 1,3;1,4-β-glucans or 4-nitrophenyl- and methylumbelliferyl-β-D: -glucopyranosides. Analysis of hydrolysis products formed during time-course hydrolysis of laminaran by high-performance anion exchange chromatography with pulsed amperometric detection revealed a strict exo mode of action, with glucose being the sole reaction product even at the initial stages of hydrolysis. The T. emersonii exo-1,3-β-glucanase was inhibited by glucono-δ-lactone (K(i) 1.25 mM) but at significantly higher concentrations than typically inhibitory for exo-glycosidases such as β-glucosidase. 'De novo' sequence analysis of the purified enzyme suggests that it belongs to family GH5 of the glycosyl hydrolase superfamily. The results clearly show that the exo-1,3-β-glucanase is yet another novel enzyme present in the β-glucanolytic enzyme system of T. emersonii.
- Published
- 2011
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85. HIV-1 resistance testing influences treatment decision-making.
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Diaz RS, Sucupira MC, Vergara TR, Brites C, Bianco RD, Bonasser Filho F, Colares GK, Portela E, Cherman LA, Barcelos NT, Tupinambas U, Turcato G Jr, Allamasey L, Bacheler L, and Tuohy M
- Subjects
- Adult, Brazil, Female, Genotype, HIV Infections virology, HIV-1 genetics, Humans, Male, Phenotype, Anti-HIV Agents therapeutic use, Decision Making, Drug Resistance, Viral, HIV Infections drug therapy, HIV-1 drug effects
- Abstract
Objective: To investigates how the use of HIV-1 resistance tests influences physician decision-making., Methods: Ten experienced reference physicians from the Brazilian Network for Drug Resistance each received ten patients' case histories. The selected patients had experienced at least two virological failures. First, reference physicians were asked to empirically select a new regimen for each patient. Second, after genotype report (ViroSeq 2.6) was provided, and physicians were again asked to select a new regimen considering this additional information. Finally, they were asked to select a regimen after receiving a virtual phenotype result (vircoTYPE 3.9.00)., Results: In 79% of the cases, physicians changed their empirical choice of regimen after receiving the genotype report, resulting in an increase in the mean number of active drugs from 1.8 to 2.2 (p = 0.0003), while the average number of drugs/regimen remained at 4.0. After receipt of the virtual phenotype report, additional changes were made in 75% of the patient cases, resulting in an increase in the number of active drugs to 2.8 (p < 0.0001), while the average number of drugs/regimen remained at 4.0. After receipt of the genotype report, 48% of the changes were in NRTIs, 29% were in NNRTIs and 60% were in PIs; after consideration of the virtual phenotype, 61%, 10% and 49% of the changes, respectively, were in these categories of drugs. Fourteen percent of the physicians rated the genotype report as "extremely useful", whereas 34% rated the subsequent virtual phenotype report as "extremely useful" (p = 0.0003)., Conclusions: Resistance testing has a significant impact on physicians' choices of antiretroviral salvage therapies, and it promotes the selection of more active drugs.
- Published
- 2010
86. Influence of Sous Vide and water immersion processing on polyacetylene content and instrumental color of parsnip (Pastinaca sativa) disks.
- Author
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Rawson A, Koidis A, Rai DK, Tuohy M, and Brunton N
- Subjects
- Color, Food Handling methods, Pastinaca chemistry, Plant Extracts analysis, Polyynes analysis
- Abstract
The effect of blanching (95 +/- 3 degrees C) followed by sous vide (SV) processing (90 degrees C for 10 min) on levels of two polyacetylenes in parsnip disks immediately after processing and during chill storage was studied and compared with the effect of water immersion (WI) processing (70 degrees C for 2 min.). Blanching had the greatest influence on the retention of polyacetylenes in sous vide processed parsnip disks resulting in significant decreases of 24.5 and 24% of falcarinol (1) and falcarindiol (2) respectively (p < 0.05). Subsequent SV processing did not result in additional significant losses in polyacetylenes compared to blanched samples. Subsequent anaerobic storage of SV processed samples resulted in a significant decrease in 1 levels (p < 0.05) although no change in 2 levels was observed (p > 0.05). 1 levels in WI processed samples were significantly higher than in SV samples (p
- Published
- 2010
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87. An experimental in-vivo canine model for adult shunt infection.
- Author
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Bayston R, Brant C, Dombrowski SM, Hall G, Tuohy M, Procop G, and Luciano MG
- Abstract
Background: Detailed human studies of the mechanisms and development of shunt infection in real time are not possible, and we have developed a canine hydrocephalus model to overcome this. The intention of this pilot study was to show that the canine hydrocephalus model could be shunted using conventional "human" shunts, and that a shunt infection could be established so that further studies could then be planned., Methods: Hydrocephalus was induced in seven dogs (Canis familiaris) by fourth ventricle obstruction. Four weeks later they were shunted using a Hakim Precision valve. Four of the dogs received shunts whose ventricular catheter had been inoculated with Staphylococcus epidermidis, and three were uninoculated controls. Four weeks after shunting the dogs were sacrificed and necropsy was performed. Removed shunts and tissue samples were examined microbiologically and isolates were subjected to detailed identification and genomic comparison., Results: All the dogs remained well after shunting. Examination of removed shunt components revealed S. epidermidis in the brain and throughout the shunt system in the four inoculated animals, but in two of these Staphylococcus intermedius was also found. S. intermedius was also isolated from all three "negative" controls. There were slight differences between S. intermedius strains suggesting endogenous infection rather than cross- infection from a point source., Conclusion: Shunt infection was established in the canine model, and had the experiment been extended beyond four weeks the typical microbiological, pathological and clinical features might have appeared. The occurrence of unplanned shunt infections in control animals due to canine normal skin flora reflects human clinical experience and underlines the usual source of bacteria causing shunt infection.
- Published
- 2008
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88. Relapsing polychondritis: reversible airway obstruction or asthma.
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Mohammad A, Ambrose N, Tuohy M, Conway R, Costello R, and Kearns G
- Subjects
- Airway Obstruction drug therapy, Asthma complications, Female, Humans, Immunosuppressive Agents therapeutic use, Isoxazoles therapeutic use, Leflunomide, Middle Aged, Polychondritis, Relapsing drug therapy, Prednisone therapeutic use, Airway Obstruction etiology, Polychondritis, Relapsing complications, Polychondritis, Relapsing diagnosis
- Abstract
We describe a patient who presented with poorly controlled asthma. Bronchoscopy showed collapsing airways, characteristic of RP (relapsing polychondritis).
- Published
- 2008
89. Recognition and treatment of neonatal community-associated MRSA pneumonia and bacteremia.
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Yee-Guardino S, Kumar D, Abughali N, Tuohy M, Hall GS, and Kumar ML
- Subjects
- Antitubercular Agents therapeutic use, Bacteremia microbiology, Community-Acquired Infections diagnosis, Community-Acquired Infections drug therapy, Drug Administration Schedule, Gentamicins therapeutic use, Humans, Infant, Newborn, Necrosis, Rifampin therapeutic use, Twins, Vancomycin therapeutic use, Anti-Bacterial Agents therapeutic use, Bacteremia diagnosis, Bacteremia drug therapy, Methicillin Resistance, Pneumonia, Staphylococcal diagnosis, Pneumonia, Staphylococcal drug therapy, Staphylococcus aureus drug effects
- Abstract
Community-associated strains of methicillin-resistant Staphylococcus aureus (CA-MRSA) have recently emerged as a major cause of serious infections among older children and are now being seen in NICU patients. We present the case of a preterm infant with CA-MRSA necrotizing pneumonia and secondary bacteremia., (Copyright 2007 Wiley-Liss, Inc.)
- Published
- 2008
- Full Text
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90. Rapid species determination of Nocardia keratitis using pyrosequencing technology.
- Author
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Galor A, Hall GS, Procop GW, Tuohy M, Millstein ME, and Jeng BH
- Subjects
- Adult, Anti-Infective Agents therapeutic use, Bacterial Typing Techniques, Base Sequence, Eye Infections, Bacterial diagnosis, Eye Infections, Bacterial drug therapy, Humans, Keratitis diagnosis, Keratitis drug therapy, Male, Molecular Sequence Data, Nocardia isolation & purification, Nocardia Infections diagnosis, Nocardia Infections drug therapy, Ophthalmic Solutions therapeutic use, Trimethoprim, Sulfamethoxazole Drug Combination therapeutic use, DNA, Bacterial analysis, Eye Infections, Bacterial microbiology, Keratitis microbiology, Nocardia genetics, Nocardia Infections microbiology, Sequence Analysis, DNA methods
- Abstract
Purpose: To describe a new technique, pyrosequencing, which allows for the rapid identification of Mycobacterium and Nocardia species., Design: Interventional case report., Methods: The medical records of a patient presenting with an infectious keratitis were reviewed., Results: A case of Nocardia abscessus/arthrititis/asiatica keratitis was diagnosed in a young individual with the aid of pyrosequencing technology. Based on presumed antibiotic sensitivities, therapy with topical trimethoprim-sulfamethoxazole eyedrops was initiated, and the infection was cleared rapidly with minimal residual scarring., Conclusions: Pyrosequencing may be a useful tool in aiding the rapid diagnosis and treatment of ocular infections caused by slow-growing pathogens.
- Published
- 2007
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91. Expression in Trichoderma reesei and characterisation of a thermostable family 3 beta-glucosidase from the moderately thermophilic fungus Talaromyces emersonii.
- Author
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Murray P, Aro N, Collins C, Grassick A, Penttilä M, Saloheimo M, and Tuohy M
- Subjects
- Amino Acid Sequence, Cloning, Molecular, Enzyme Stability physiology, Genetic Vectors genetics, Molecular Sequence Data, Molecular Weight, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins isolation & purification, Sequence Alignment, Sequence Homology, Amino Acid, Talaromyces genetics, Talaromyces growth & development, beta-Glucosidase isolation & purification, Gene Expression Regulation, Enzymologic, Talaromyces enzymology, Temperature, Trichoderma genetics, beta-Glucosidase chemistry, beta-Glucosidase genetics
- Abstract
The gene encoding a thermostable beta-glucosidase (cel3a) was isolated from the thermophilic fungus Talalaromyces emersonii by degenerate PCR and expressed in the filamentous fungus Trichoderma reesei. The cel3a gene encodes an 857 amino acid long protein with a calculated molecular weight of 90.59 kDa. Tal. emersonii beta-glucosidase falls into glycosyl hydrolase family 3, showing approximately 56 and 67% identity with Cel3b (GenBank ) from T. reesei, and a beta-glucosidase from Aspergillus Niger (GenBank ), respectively. The heterologously expressed enzyme, Cel3a, was a dimer equal to 130 kDa subunits with 17 potential N-glycosylation sites and a previously unreported beta-glucosidase activity produced extracellularly by Tal. emersonii. Cel3a was thermostable with an optimum temperature of 71.5 degrees C and half life of 62 min at 65 degrees C and was a specific beta-glucosidase with no beta-galactosidase side activity. Cel3a had a high specific activity against p-nitrophenyl-beta-D-glucopyranoside (Vmax, 512 IU/mg) and was competitively inhibited by glucose (k(i), 0.254 mM). Cel3a was also active against natural cellooligosacharides with glucose being the product of hydrolysis. It displayed transferase activity producing mainly cellobiose from glucose and cellotetrose from cellobiose.
- Published
- 2004
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92. Crystallization and preliminary crystallographic analysis of the catalytic domain cellobiohydrolase I from Talaromyces emersonii.
- Author
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Grassick A, Birrane G, Tuohy M, Murray P, and Higgins T
- Subjects
- Binding Sites, Catalytic Domain, Crystallization methods, Crystallography, X-Ray, Fungal Proteins chemistry, Molecular Sequence Data, Phosphates, Cellulose 1,4-beta-Cellobiosidase chemistry, Talaromyces chemistry
- Abstract
Cellobiohydrolase IB is the first native enzyme from the filamentous fungus Talaromyces emersonii to be crystallized. It is a highly thermostable exo-acting enzyme. The native enzyme (MW = 56 kDa) was crystallized using the hanging-drop vapour-diffusion method with ammonium phosphate (dibasic) as a precipitant at pH 8.5. The crystal belongs to the tetragonal space group P4(1)2(1)2, with unit-cell parameters a = b = 74.43, c = 176.92 A, and diffracted to 1.77 A resolution at room temperature.
- Published
- 2003
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93. Molecular characterisation and expression analysis of the first hemicellulase gene (bxl1) encoding beta-xylosidase from the thermophilic fungus Talaromyces emersonii.
- Author
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Reen FJ, Murray PG, and Tuohy MG
- Subjects
- 5' Untranslated Regions, Amino Acid Sequence, Base Sequence, Blotting, Northern, Blotting, Southern, Cloning, Molecular, DNA Restriction Enzymes, DNA, Complementary isolation & purification, Gene Expression Regulation, Enzymologic, Gene Expression Regulation, Fungal, Glycoside Hydrolases biosynthesis, Glycoside Hydrolases chemistry, Hot Temperature, Molecular Sequence Data, Protein Sorting Signals, Sequence Homology, Amino Acid, Talaromyces genetics, Transcription, Genetic, Xylosidases biosynthesis, Xylosidases chemistry, Glycoside Hydrolases genetics, Talaromyces enzymology, Xylosidases genetics
- Abstract
The gene coding for beta-xylosidase, bxl1, has been cloned from the thermophilic filamentous fungus, Talaromyces emersonii. This is the first report of a hemicellulase gene from this novel source. At the genomic level, bxl1 consists of an open reading frame of 2388 nucleotides with no introns that encodes a putative protein of 796 amino acids. The bxl1 translation product contains a signal peptide of 21 amino acids that yields a mature protein of 775 amino acids, with a predicted molecular mass of 86.8 kDa. The deduced amino acid sequence of bxl1 exhibits considerable homology with the primary structures of the Aspergillus niger, Aspergillus nidulans, Aspergillus oryzae, and Trichoderma reesei beta-xylosidase gene products, and with some beta-glucosidases, all of which have been classified as Family 3 glycosyl hydrolases. Northern blot analysis of the bxl1 gene indicates that it is induced by xylan and methyl-beta-D-xylopyranoside. D-Xylose induced expression of bxl1 but was shown to repress induction of the gene at high concentrations. The presence of six CreA binding sites in the upstream regulatory sequence (URS) of the bxl1 gene indicates that the observed repression by D-glucose may be mediated, at least partly, by this catabolite repressor.
- Published
- 2003
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94. Molecular cloning, transcriptional, and expression analysis of the first cellulase gene (cbh2), encoding cellobiohydrolase II, from the moderately thermophilic fungus Talaromyces emersonii and structure prediction of the gene product.
- Author
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Murray PG, Collins CM, Grassick A, and Tuohy MG
- Subjects
- Amino Acid Sequence, Base Sequence, Cellulase chemistry, Cellulase metabolism, Cellulose 1,4-beta-Cellobiosidase, Cloning, Molecular, Fungal Proteins chemistry, Fungal Proteins genetics, Molecular Sequence Data, Protein Conformation, Regulatory Sequences, Nucleic Acid, Sequence Alignment, Talaromyces genetics, Talaromyces metabolism, Cellulase genetics, Fungal Proteins metabolism, Gene Expression Regulation, Fungal, Talaromyces enzymology, Transcription, Genetic
- Abstract
A gene (cbh2) encoding cellobiohydrolase II was isolated from the fungus Talaromyces emersonii by rapid amplification of cDNA ends techniques and the equivalent genomic sequence was subsequently cloned. This represents the first report of a key component of the cellulase regulon from this organism. DNA sequencing revealed that cbh2 has an open reading frame of 1377 bp, which encodes a putative polypeptide of 459 amino acids, and is interrupted by seven introns. The deduced amino acid sequence revealed that cbh2 has a modular structure with a predicted molecular mass of 47 kDa and consisting of a fungal type carbohydrate binding module separated from a catalytic domain by a proline/serine/threonine rich linker region. The deduced protein is homologous to fungal cellobiohydrolases in Family 6A of the glycosyl hydrolases. Profiles of cbh2 expression in T. emersonii investigated by Northern blot analysis revealed that expression is regulated at the transcriptional level. Expression of the T. emersonii cbh2 gene is induced by cellulose, xylan, xylose, and gentiobiose and clearly repressed by glucose. Putative regulatory element consensus sequences have been identified in the upstream regulatory sequence of the cbh2 gene including the catabolite repressor element and the activator of cellulase expression (Ace) binding sites. High sequence identity (67%) between the catalytic domain of Cel 6A from Trichoderma reesei and the T. emersonii cbh2 gene product allowed structure prediction for the 3D model of the T. emersonii catalytic domain to be a variant of the classical TIM alpha/beta fold.
- Published
- 2003
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95. Isolation and characterization of a thermostable endo-beta-glucanase active on 1,3-1,4-beta-D-glucans from the aerobic fungus talaromyces emersonii CBS 814.70.
- Author
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Murray PG, Grassick A, Laffey CD, Cuffe MM, Higgins T, Savage AV, Planas A, and Tuohy MG
- Abstract
A novel endoglucanase active on 1,3-1,4-beta-D-glucans was purified to apparent homogeneity from submerged cultures of the moderately thermophilic aerobic fungus Talaromyces emersonii CBS 814.70. The enzyme is a single subunit glycoprotein with M(r) and pI values of 40.7 +/- 0.3 kDa and 4.4, respectively, and an estimated carbohydrate content of 77% (w/w). The purified beta-glucanase displayed activity over broad ranges of pH and temperature, yielding respective optima values of pH 4.8 and 80 degrees C. This enzyme was markedly thermostable with 15% of the original activity remaining after incubation for 15 min at 100 degrees C. Substrate specificity studies revealed the identity of the enzyme to be a 1,3-1,4-beta-D-glucanase. Identical K(m) values (13.38 mg.ml(-1)) were obtained with lichenan and BBG, while the V(max) value with lichenan (142.9 IU.mg(-1)) was approximately twice the value obtained with BBG (79.3 IU.mg(-1)). Time-course hydrolysis of barley-beta-glucan did not proceed linearly with respect to time indicating an 'endo' or more processive action for the enzyme. HPAEC fractionation of the products of hydrolysis yielded a range of oligosaccharides, with cellobiose, cellotriose and cellotetraose being the predominant oligosaccharide products.
- Published
- 2001
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- View/download PDF
96. Multicenter evaluation of the BDProbeTec ET System for detection of Chlamydia trachomatis and Neisseria gonorrhoeae in urine specimens, female endocervical swabs, and male urethral swabs.
- Author
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Van Der Pol B, Ferrero DV, Buck-Barrington L, Hook E 3rd, Lenderman C, Quinn T, Gaydos CA, Lovchik J, Schachter J, Moncada J, Hall G, Tuohy MJ, and Jones RB
- Subjects
- Cervix Uteri microbiology, Chlamydia trachomatis genetics, Culture Media, DNA, Bacterial analysis, Female, Humans, Male, Neisseria gonorrhoeae genetics, Sensitivity and Specificity, Specimen Handling, Urethra microbiology, Urine microbiology, Chlamydia Infections microbiology, Chlamydia trachomatis isolation & purification, Gonorrhea microbiology, Neisseria gonorrhoeae isolation & purification, Nucleic Acid Amplification Techniques methods, Reagent Kits, Diagnostic
- Abstract
The performance of the Becton Dickinson BDProbe Tec ET System Chlamydia trachomatis and Neisseria gonorrhoeae Amplified DNA Assays (BD Biosciences, Sparks, Md.) was evaluated in a multicenter study. Specimens were collected from 2,109 men and women, with or without symptoms, attending sexually transmitted disease, family planning, and obstetrics and gynecology clinics. Both swab and urine samples were collected, and the results obtained from 4,131 specimens were compared to those from culture and the LCx nucleic acid amplification test (Abbott Industries, Abbott Park, Ill.). PCR and cytospin of the culture transport medium with chlamydia direct fluorescent antibody staining were used to adjudicate chlamydia culture-negative results. Sensitivity and specificity were calculated both with and without use of the amplification control (AC), with little apparent difference in the results. Without the AC result, sensitivity for C. trachomatis and N. gonorrhoeae were 92.8 and 96.6%, respectively, for cervical swabs and 80.5 and 84.9% for urine from women. C. trachomatis and N. gonorrhoeae sensitivities were 92.5 and 98.5%, respectively, for male urethral swabs and 93.1 and 97.9% for urine from men. This amplified DNA system for simultaneous detection of chlamydial and gonococcal infections demonstrated superior sensitivity compared to chlamydia culture and has performance characteristics comparable to those of other commercially available nucleic acid-based assays for these organisms.
- Published
- 2001
- Full Text
- View/download PDF
97. Quanticalc assessment of the clinical scaling benefits provided by pyrophosphate dentifrices with and without triclosan.
- Author
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White DJ, Bollmer BW, Baker RA, Cox ER, Perlich MA, McClanahan SF, Beiswanger BB, Mau M, Tuohy M, and Arends J
- Subjects
- Analysis of Variance, Dental Scaling methods, Dental Stress Analysis instrumentation, Dentifrices chemistry, Double-Blind Method, Drug Combinations, Efficiency, Female, Humans, Male, Oral Hygiene Index, Sodium Fluoride therapeutic use, Stress, Mechanical, Transducers, Work, Anti-Infective Agents, Local therapeutic use, Dental Calculus prevention & control, Dental Scaling instrumentation, Dentifrices therapeutic use, Diphosphates therapeutic use, Task Performance and Analysis, Triclosan therapeutic use
- Abstract
The Quanticalc (QC) dental scaler permits a quantitative assessment of the work used by professionals in calculus removal through the measurement of force dynamics and scaling strokes applied in calculus debridement. The purpose of this study was to use the QC to compare the clinical effects of two 5% pyrophosphate dentifrices on dental calculus in subjects following six-months' product use. Three-hundred forty-six subjects participated in a six-month, double-blind tartar control clinical trial involving traditional Volpe-Manhold Index (VMI) evaluations. Following the six-month VMI examinations, the subjects had a QC prophylaxis (scaling force measurements). The three dentifrice treatment groups included a control dentifrice (NaF only, Crest); NaF dentifrice containing 5.0% pyrophosphate (Crest Tartar Control); and NaF dentifrice containing 5.0% pyrophosphate plus 0.28% triclosan (antimicrobial). Subjects were balanced by baseline (pretest) VMI scores at the start of the trial. QC examinations revealed statistically significant reductions in total force and stroke number used by the therapist to scale the six anterior VMI teeth for subjects using the pyrophosphate tartar control dentifrices as compared to control dentifrice. The reduction in scaling effort amounted to almost 3 kg per scaling for subjects. QC results paralleled VMI reductions of calculus on the teeth and demonstrated that the use of 5% pyrophosphate dentifrices, with or without triclosan antimicrobial, results in significant reductions in the total (developed) force and strokes required by therapists in regular calculus debridement at a six-month interval. The clinical benefits of tartar control toothpastes may not only include reductions in cosmetically objectionable supragingival calculus, but in reducing professional effort in calculus debridement during regular prophylaxis.
- Published
- 1996
98. The xylan-degrading enzyme system of Talaromyces emersonii: novel enzymes with activity against aryl beta-D-xylosides and unsubstituted xylans.
- Author
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Tuohy MG, Puls J, Claeyssens M, Vrsanská M, and Coughlan MP
- Subjects
- Hydrogen-Ion Concentration, Hydrolysis, Isoelectric Point, Isoenzymes biosynthesis, Isoenzymes isolation & purification, Kinetics, Oligosaccharides metabolism, Substrate Specificity, Temperature, Xylosidases biosynthesis, Xylosidases isolation & purification, Ascomycota enzymology, Glycosides metabolism, Isoenzymes metabolism, Xylans metabolism, Xylosidases metabolism
- Abstract
Talaromyces emersonii, a thermophilic aerobic fungus, produces a complete xylan-degrading enzyme system when grown on appropriate substrates. In this paper we present the physicochemical and catalytic properties of three enzymes, xylosidase (Xyl) I (M(r) 181,000; pI 8.9), II (M(r) 131,000; pI 5.3) and III (M(r) 54,200; pI 4.2). Xyl I and II appear to be dimeric and Xyl III is a single-subunit protein. All three enzymes catalyse the hydrolysis of aryl beta-D-xylosides and xylo-oligosaccharides. Xyl I is a classic beta-xylosidase (1,4-beta-D-xylan xylohydrolase; EC 3.2.1.37), and Xyl II and III are novel xylanases (endo-1,4-beta-D-xylan xylanohydrolase; EC 3.2.1.8) which we believe have not hitherto been reported. In addition to the above substrates, they also catalyse the extensive hydrolysis of unsubstituted xylans, and may have considerable biotechnological potential. The hydrolysis product profiles and bond-cleavage frequencies with various substrates are presented.
- Published
- 1993
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- View/download PDF
99. The xylan-degrading enzyme systems of Penicillium capsulatum and Talaromyces emersonii.
- Author
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Filho EX, Tuohy MG, Puls J, and Coughlan MP
- Subjects
- Chromatography, High Pressure Liquid, Chromatography, Ion Exchange, Glycoside Hydrolases isolation & purification, Kinetics, Xylan Endo-1,3-beta-Xylosidase, Ascomycota enzymology, Glycoside Hydrolases metabolism, Penicillium enzymology, Xylans metabolism
- Published
- 1991
- Full Text
- View/download PDF
100. Quantitative cytology of the sperm cells of Brassica campestris and B. oleracea.
- Author
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McConchie CA, Russell SD, Dumas C, Tuohy M, and Knox RB
- Abstract
Pollen grains of Brassica campestris L. var. acephala DC and B. oleracea L. were serially sectioned and examined using transmission electron microscopy to determine the three-dimensional organization of sperm cells within the microgametophyte and the quantity of membrane-bound organelles occurring within each cell. Sperm cells occur in pairs within each pollen grain, but are dimorphic, differing in size, morphology and mitochondrial content. The larger of the two sperm cells (Svn) is distinguished by the presence of a blunt evagination, which in B. oleracea wraps around and lies within shallow furrows on the vegetative nucleus and in B. campestris can penetrate through internal enclaves of the vegetative nucleus. This sperm cell contains more mitochondria in both species than the second sperm cell (Sua). This latter cell is linked to the first by a common cell junction with the S vn, but is not associated with the vegetative nucleus and lacks a cellular evagination. Such differences are indicative of a system of cytoplasmic heterospermy in which sperm cells possess significantly different quantities of mitochondria.
- Published
- 1987
- Full Text
- View/download PDF
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