177 results on '"Susumu Nakata"'
Search Results
52. Modeling High-Quality and Game-Like Virtual Space of a Court Noble House by Using 3D Game Engine.
- Author
-
Wang Sheng, Susumu Nakata, Satoshi Tanaka, Hiromi T. Tanaka, and Akihiro Tsukamoto
- Published
- 2013
- Full Text
- View/download PDF
53. Particle-Based Transparent Visualization of 3D Inner Structure of Funeboko in Gion Festival.
- Author
-
Makoto Uemura, Masatsugu Yamamoto, Satoshi Tanaka, Susumu Nakata, and Kyoko Hasegawa
- Published
- 2011
- Full Text
- View/download PDF
54. Meshfree elastodynamic Analysis of three-dimensional solids using radial Point interpolation method.
- Author
-
Kyoko Hasegawa, Susumu Nakata, and Satoshi Tanaka
- Published
- 2011
- Full Text
- View/download PDF
55. Grid-Independent Metropolis Sampling for Volume Visualization.
- Author
-
Satoshi Tanaka, Kyoko Hasegawa, Susumu Nakata, Hideo Nakajima, Takuya Hatta, Frederika Rambu Ngana, Takuma Kawamura, Naohisa Sakamoto, and Koji Koyamada
- Published
- 2010
- Full Text
- View/download PDF
56. Performance Evaluation of Electromagnetic Shield Constructed from Open-CellMetal Foam Based on Sphere Functions.
- Author
-
Yuya Hanaoka, Taku Itoh, Kohei Tateyama, Susumu Nakata, and Keiko Watanabe
- Abstract
This study evaluates the performance of a model of open-cell metal foams generated by sphere functions. To this end, an electromagnetic shield constructed from the model was inserted between two horn antennas in an electromagnetic wave propagation simulation. The foam-hole diameter in the electromagnetic shield model was varied as d = 2.5 and 5.0 mm, and the frequency of the electromagnetic waves was varied from 3 to 13 GHz. In the numerical experiments of shield effectiveness, the shields with foam holes of both diameters attenuated the electromagnetic waves across the studied frequency range. The shield effectiveness was enhanced at low frequencies and in the shield with smaller hole diameter. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
57. Nonreflecting Outlet Boundary Conditions for Smoothed Particle Hydrodynamics Simulation of Small-Scale Open-Channel Flow
- Author
-
Thanh T. Bui and Susumu Nakata
- Subjects
Smoothed-particle hydrodynamics ,Compressibility ,Periodic boundary conditions ,Outflow ,Astrophysics::Cosmology and Extragalactic Astrophysics ,Boundary value problem ,Inflow ,Mechanics ,Astrophysics::Galaxy Astrophysics ,Geology ,Physical quantity ,Open-channel flow - Abstract
In this paper, we propose a nonreflecting outlet boundary condition (NROBC) for particle-based fluid simulation as a combination of inflow/outflow algorithm and periodic boundary condition. We assume to use δ-SPH scheme for weakly compressible flows. In the inflow/outflow algorithm, the domain is divided into four zones: fluid, wall, inflow and outflow zones. The NROBC proposed in this paper inherits the advantage of the periodic boundary condition in the sense that the number of particles is constant. This property contributes to conservation of total mass and insertion of inflow particles without rearranging process. The physical quantities such as density and velocity at the inflow zone are unknown depending on the situation. Our boundary condition supports both cases, prescribed and non-prescribed, and the loss of the accuracy is small even if the quantities are non-prescribed at the inflow zone. In addition, tensile instability is effectively reduced by particle shifting technique. Several simulations are presented to validate and demonstrate the applicability and versatility of the proposed technique. Comparisons between numerical results and analytical solutions are provided with very low Mean Square Error Percent (MSEP) in both test cases.
- Published
- 2020
- Full Text
- View/download PDF
58. Cytology-based Detection of Circulating Tumour Cells in Human Pancreatic Cancer Xenograft Models With
- Author
-
Yukako, Ito, Eriko, Inoue, Yuki, Matsui, Shinji, Kobuchi, Chiami, Moyama, Kikuko, Amagase, Mayumi, Yoshimura, Yuzuru, Ikehara, Susumu, Nakata, and Hayao, Nakanishi
- Subjects
Pancreatic Neoplasms ,Proto-Oncogene Proteins p21(ras) ,Mice ,Cell Line, Tumor ,Cytodiagnosis ,Mutation ,Animals ,Humans ,Neoplastic Cells, Circulating ,Xenograft Model Antitumor Assays - Abstract
To examine the dynamics of circulating tumour cells (CTCs) in pancreatic cancer (PC), new mouse CTC models from human PC xenografts were developed.Orthotopic (pancreas) and heterotopic (subcutaneous) transplantation models using GFP-tagged SUIT-2 PC cells were prepared. Using a cytology-based CTC detection platform, CTCs and metastasis were compared.The two types of orthotopic models, including the surgical transplantation model and the intraperitoneal injection model, showed a similar pattern of initial pancreatic tumour formation and subsequent development of peritoneal and hematogenous lung metastases. In the heterotopic model, only hematogenous lung metastasis was observed, and the number of CTCs and lung metastases was higher than that of the orthotopic model. Furthermore, KRAS mutation (G12D) was detected in CTCs.These orthotopic and heterotopic models clearly differ in terms of the pattern of metastasis and CTCs and therefore, would be useful PC models to investigate the effect of drug-therapy on CTCs and the role of KRAS mutation.
- Published
- 2020
59. γ-Glutamylcyclotransferase, a novel regulator of HIF-1α expression, triggers aerobic glycolysis
- Author
-
Keiko, Taniguchi, Susumu, Kageyama, Chiami, Moyama, Shota, Ando, Hiromi, Ii, Eishi, Ashihara, Mano, Horinaka, Toshiyuki, Sakai, Shigehisa, Kubota, Akihiro, Kawauchi, and Susumu, Nakata
- Subjects
Mice ,Cell Line, Tumor ,Citric Acid Cycle ,NIH 3T3 Cells ,Animals ,Humans ,Hypoxia-Inducible Factor 1, alpha Subunit ,Glycolysis ,gamma-Glutamylcyclotransferase - Abstract
Metabolic reprogramming leading to aerobic glycolysis, termed the "Warburg effect," is a critical property of cancer cells. However, the precise mechanisms underlying this phenomenon are not fully understood. A growing body of evidence indicates that γ-glutamylcyclotransferase (GGCT), an enzyme involved in glutathione homeostasis that is highly expressed in many types of cancer, represents a promising therapeutic target. In this study, we identified GGCT as a novel regulator of hypoxia-inducible factor-1α (HIF-1α), a transcription factor that plays a role in hypoxia adaptation promoting aerobic glycolysis. In multiple human cancer cell lines, depletion of GGCT downregulated HIF-1α at the mRNA and protein levels. Conversely, in NIH3T3 mouse fibroblasts, overexpression of GGCT upregulated HIF-1α under normoxia. Moreover, depletion of GGCT downregulated HIF-1α downstream target genes involved in glycolysis, whereas overexpression of GGCT upregulated those genes. Metabolomic analysis revealed that modulation of GGCT expression induced a metabolic switch from the citric acid cycle to glycolysis under normoxia. In addition, we found that GGCT regulates expression of HIF-1α protein via the AMPK-mTORC1-4E-BP1 pathway in PC3 cells. Thus GGCT regulates the expression of HIF-1α in cancer cells, causing a switch to glycolysis.
- Published
- 2020
60. Efficacy of Panitumumab and Cetuximab in Patients with Colorectal Cancer Previously Treated with Bevacizumab; a Combined Analysis of Individual Patient Data from ASPECCT and WJOG6510G
- Author
-
Hiroya Taniguchi, Kentaro Yamazaki, Takeharu Yamanaka, Susumu Nakata, Paul Ruff, Timothy J. Price, Daisuke Sakai, Tae Won Kim, Marc Peeters, Hiroyuki Kimura, and Kei Muro
- Subjects
0301 basic medicine ,Oncology ,Cancer Research ,medicine.medical_specialty ,Bevacizumab ,Colorectal cancer ,colorectal cancer ,medicine.disease_cause ,lcsh:RC254-282 ,Article ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,cetuximab ,medicine ,Panitumumab ,Cetuximab ,Proportional hazards model ,business.industry ,Hazard ratio ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Irinotecan ,030104 developmental biology ,anti-EGFR therapy ,030220 oncology & carcinogenesis ,KRAS ,Human medicine ,business ,panitumumab ,medicine.drug - Abstract
Background: Phase-III ASPECCT and randomised phase-II WJOG6510G trials demonstrated the noninferiority of panitumumab, when compared with cetuximab, for overall survival in patients with chemotherapy-refractory wild-type KRAS exon 2 metastatic colorectal cancer. Methods: The subgroup that received bevacizumab either prior to panitumumab or cetuximab monotherapy (ASPECCT) or in combination with irinotecan (WJOG6510G) was included. Multivariate Cox models were created, including the treatment arms as covariates together with patient, disease and treatment characteristics. Results: We included 185 and 189 patients in the panitumumab and cetuximab arms, respectively. The median overall survival was 12.8 and 10.1 months [p = 0.0031; log-rank test, stratified by trial; hazard ratio (HR), 0.72; 95% confidence interval (CI), 0.58–0.90], and the median progression-free survival was 4.7 and 4.1 months, in the panitumumab and cetuximab arms, respectively (p = 0.0207; HR, 0.79; 95% CI, 0.64–0.97). The treatment regimen was an independent prognostic factor of overall survival (adjusted HR, 0.69; 95% CI, 0.54–0.87; p = 0.0013). Conclusions: Panitumumab significantly prolonged the overall survival and progression-free survival, when compared with cetuximab in the cohort that previously received bevacizumab in the included studies. Clinical Trial Registration: ASPECCT trial registered with ClinicalTrials.gov (NCT01001377) and WJOG6510G trial registered with UMIN-CTR (UMIN000006643).
- Published
- 2020
61. Bone-Marrow-Derived Microglia-Like Cells Ameliorate Brain Amyloid Pathology and Cognitive Impairment in a Mouse Model of Alzheimer’s Disease
- Author
-
Hiroko Nagayama, Susumu Nakata, Shouma Itezono, Yoshihisa Kitamura, Sayaka Konoya, Kazuyuki Takata, Yoshitaka Yano, Yuki Toda, Eishi Ashihara, Yugo Chisaki, and Shohei Kawanishi
- Subjects
Male ,0301 basic medicine ,Lipopolysaccharide ,Phagocytosis ,medicine.medical_treatment ,Mice, Transgenic ,Hippocampal formation ,Biology ,Mesenchymal Stem Cell Transplantation ,Amyloid beta-Protein Precursor ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Immune system ,Alzheimer Disease ,Cell Adhesion ,Presenilin-1 ,medicine ,Animals ,Receptors, Immunologic ,Amyloid beta-Peptides ,Membrane Glycoproteins ,Microglia ,Macrophage Colony-Stimulating Factor ,General Neuroscience ,Calcium-Binding Proteins ,Microfilament Proteins ,Brain ,General Medicine ,Cell biology ,Mice, Inbred C57BL ,Transplantation ,Disease Models, Animal ,Psychiatry and Mental health ,Clinical Psychology ,030104 developmental biology ,medicine.anatomical_structure ,Cytokine ,Gene Expression Regulation ,chemistry ,Mutation ,Female ,Bone marrow ,Geriatrics and Gerontology ,Cognition Disorders ,030217 neurology & neurosurgery - Abstract
Microglia, the primary immune cells in the brain, sense pathogens and tissue damage, stimulate cytokine production, and phagocytosis to maintain homeostasis. Accumulation of amyloid-β peptides (Aβ) in the brain triggers the onset of Alzheimer's disease (AD). Accordingly, promotion of Aβ clearance represents a promising strategy for AD therapy. We previously demonstrated that primary-cultured rat microglia phagocytose Aβ, and that transplantation of these cells ameliorates the Aβ burden in brains of Aβ-injected rats. In this study, we demonstrate that stimulation with colony-stimulating factor-1 efficiently differentiates mouse bone marrow cells into bone marrow-derived microglia-like (BMDML) cells that express markers for microglia, including the recently identified transmembrane protein 119. BMDML cells effectively phagocytose Aβ in vitro, with effects comparable to primary-cultured mouse microglia and greater than peritoneal macrophages. RT-qPCR analysis for cytokine mRNA levels revealed that BMDML cells polarize to a relatively anti-inflammatory state under non-stimulated and inflammatory conditions but exert a pro-inflammatory reaction after lipopolysaccharide treatment. Moreover, BMDML cells hippocampally injected into a mouse model of AD are morphologically similar to the ramified and amoeboid types of residential microglia. Comparisons with simulations assuming a uniform distribution of cells suggest that BMDML cells migrate directionally toward Aβ plaques. We also detected Aβ phagocytosis by BMDML cells, concomitant with a reduction in the number and area of Aβ plaques. Finally, we observed amelioration of cognitive impairment in a mouse model of AD after hippocampal injection of BMDML cells. Our results suggest that BMDML cells have potential as a cell-based disease-modifying therapy against AD.
- Published
- 2018
- Full Text
- View/download PDF
62. Efficient local smoothed particle hydrodynamics with precomputed patches
- Author
-
Yasutomo Kanetsuki, John C. Wells, and Susumu Nakata
- Subjects
Fluid simulation ,Poisson disk sampling ,Applied Mathematics ,Mathematical analysis ,Improved method ,010103 numerical & computational mathematics ,Faddeev–Popov ghost ,01 natural sciences ,Computer Science Applications ,Domain (software engineering) ,010101 applied mathematics ,Smoothed-particle hydrodynamics ,symbols.namesake ,Computational Theory and Mathematics ,symbols ,Boundary value problem ,0101 mathematics ,Lagrangian ,Mathematics - Abstract
This paper presents an improved method for applying smoothed particle hydrodynamics within a nested Lagrangian domain of fluid particles. In our previous implementation, ghost particles, generated ...
- Published
- 2018
- Full Text
- View/download PDF
63. Prohibitin-2 is a novel regulator of p21WAF1/CIP1 induced by depletion of γ-glutamylcyclotransferase
- Author
-
Susumu Kageyama, Kengo Matsumura, Akihiro Kawauchi, Eishi Ashihara, Susumu Nakata, Tatsuhiro Yoshiki, Hiromi, Tokuhiro Chano, and Keiko Taniguchi
- Subjects
0301 basic medicine ,Gene knockdown ,Cell cycle checkpoint ,Chemistry ,Biophysics ,Regulator ,Cell Biology ,Biochemistry ,Cell biology ,Protein–protein interaction ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,0302 clinical medicine ,Downregulation and upregulation ,030220 oncology & carcinogenesis ,Cancer cell ,Growth inhibition ,Molecular Biology ,Chromatin immunoprecipitation - Abstract
Previous studies show that gamma-glutamylcyclotransferase (GGCT) is expressed at high levels in various cancer tissues and that its knockdown inhibits MCF7 cancer cell growth via upregulation of p21WAF1/CIP1 (p21). However, the detailed underlying mechanism is unclear. Here, we used yeast two-hybrid screening and co-immunoprecipitation to identify Prohibitin-2 (PHB2) as a novel protein that interacts with GGCT. We also show that nuclear expression of PHB2 in MCF7 cells falls upon GGCT knockdown, and that overexpression of PHB2 inhibits p21 upregulation. A chromatin immunoprecipitation assay revealed that nuclear PHB2 proteins bind to the p21 promoter, and that this interaction is abrogated by GGCT knockdown. Moreover, knockdown of PHB2 alone led to significant upregulation of p21 and mimicked the cellular events induced by GGCT depletion, including G0/G1 arrest, cellular senescence, and growth inhibition, in a p21 induction-dependent manner. Taken together, the results indicate that PHB2 plays a central role in p21 upregulation following GGCT knockdown and as such may promote deregulated proliferation of cancer cells by suppressing p21.
- Published
- 2018
- Full Text
- View/download PDF
64. Variable Preconditioned Krylov Subspace Method With Communication Avoiding Technique for Electromagnetic Analysis
- Author
-
Soichiro Ikuno, Susumu Nakata, Taku Itoh, Kuniyoshi Abe, and Gong Chen
- Subjects
010302 applied physics ,Iterative method ,Computer science ,Computation ,Linear system ,Krylov subspace ,Solver ,Computer Science::Numerical Analysis ,01 natural sciences ,Generalized minimal residual method ,Mathematics::Numerical Analysis ,010305 fluids & plasmas ,Computational science ,Electronic, Optical and Magnetic Materials ,Convergence (routing) ,0103 physical sciences ,Computer Science::Mathematical Software ,Conjugate residual method ,Electrical and Electronic Engineering ,Algorithm - Abstract
The variable preconditioned (VP) Krylov subspace method with communication avoiding (CA) technique is adopted for the solver of a linear system obtained from electromagnetic analysis, and the numerical features are investigated. A massive communication time between processing units (PUs) or graphics PU/many integrated core is a big issue for parallelization efficiency that needs to be solved. Although k-skip Krylov subspace method is one solution for the issue, convergence property of the method is becoming worse. For this reason, we adopt the k-skip Krylov subspace method as inner-loop solver of the VP Krylov subspace method. The result of computation shows that the VP Krylov subspace method with CA technique is very effective for the linear system obtained from electromagnetic analysis.
- Published
- 2017
- Full Text
- View/download PDF
65. CG13250, a novel bromodomain inhibitor, suppresses proliferation of multiple myeloma cells in an orthotopic mouse model
- Author
-
Jeffrey W. Strovel, Jay Chauhan, Natsuki Imayoshi, Yuki Toda, Kazuyuki Takata, Makoto Yoshioka, Susumu Nakata, Steven Fletcher, and Eishi Ashihara
- Subjects
0301 basic medicine ,BRD4 ,Genes, myc ,Biophysics ,Apoptosis ,Quinolones ,Biology ,Biochemistry ,Pathogenesis ,BET inhibitor ,Mice ,03 medical and health sciences ,Cell Line, Tumor ,Animals ,Humans ,Promoter Regions, Genetic ,Molecular Biology ,Cell Proliferation ,Nuclear Proteins ,Cell Biology ,Cell cycle ,Survival Analysis ,Bromodomain ,Disease Models, Animal ,Enhancer Elements, Genetic ,030104 developmental biology ,Histone ,Acetylation ,Cancer research ,biology.protein ,Multiple Myeloma ,Transcription Factors - Abstract
Multiple myeloma (MM) is characterized by the clonal proliferation of neoplastic plasma cells. Despite a stream of new molecular targets based on better understanding of the disease, MM remains incurable. Epigenomic abnormalities contribute to the pathogenesis of MM. bromodomain 4 (BRD4), a member of the bromodomain and extraterminal (BET) family, binds to acetylated histones during M/G1 transition in the cell cycle promoting progression to S phase. In this study, we investigated the effects of a novel BET inhibitor CG13250 on MM cells. CG13250 inhibited ligand binding to BRD4 in a dose-dependent manner and with an IC50 value of 1.1 μM. It inhibited MM proliferation in a dose-dependent manner and arrested cells in G1, resulting in the induction of apoptosis through caspase activation. CG13250 inhibited the binding of BRD4 to c-MYC promoter regions suppressing the transcription of the c-MYC gene. Administered in vivo, CG13250 significantly prolonged survival of an orthotopic MM-bearing mice. In conclusion, CG13250 is a novel bromodomain inhibitor that is a promising molecular targeting agent against MM.
- Published
- 2017
- Full Text
- View/download PDF
66. Artificial Force Free Boundaries: Particle-Based Fluid Simulation with Implicit Surfaces
- Author
-
Yasutomo Kanetsuki and Susumu Nakata
- Subjects
Smoothed-particle hydrodynamics ,Discretization ,Computer science ,Particle ,Boundary (topology) ,Boundary value problem ,Mechanics ,Cluster analysis ,Stability (probability) ,Instability - Abstract
We develop improved boundary conditions for particle-based fluid simulation with implicit surfaces. The implicit surfaces are well suited to represent complex obstacles, specifically, when the shape of the obstacles is smooth or varies with time. In existing particle-based fluid simulation with implicit surfaces, an artificially defined force is applied. Although this artificial force successfully enforces non-penetration boundary conditions to the obstacles, some stability and low-accuracy issues remain. The instability of stacking and clustering, and low-accuracy pressure fields occur because of the artificially defined force and incompatibility of the effective radius when using particle methods. This study presents an improved boundary treatment for implicit surfaces. The proposed boundary conditions follow only the formulation of particle-based methods and do not require any artificial force. When we apply the discretization techniques of particle-based methods, the governing equations are also considered on implicit surfaces. Given that the proposed treatment of boundary conditions is applicable to any particle-based method, we adapted our formulation to both explicit and implicit schemes. The results of the test show that our method does not suffer from instability near the boundary in comparison with existing methods. Moreover, the proposed method can also produce better pressure fields than the existing ones.
- Published
- 2019
- Full Text
- View/download PDF
67. Efficacy of Afatinib and Lapatinib Against
- Author
-
Susumu, Nakata, Mitsugu, Fujita, and Hayao, Nakanishi
- Subjects
Male ,Receptor, ErbB-2 ,Cell Cycle ,Gene Amplification ,Mice, Nude ,Apoptosis ,Drug Synergism ,Lapatinib ,Trastuzumab ,Afatinib ,Xenograft Model Antitumor Assays ,Mice ,Cell Movement ,Drug Resistance, Neoplasm ,Stomach Neoplasms ,Antineoplastic Combined Chemotherapy Protocols ,Biomarkers, Tumor ,Tumor Cells, Cultured ,Animals ,Humans ,Cell Proliferation ,Signal Transduction - Abstract
Trastuzumab is the only clinically approved targeted therapy for HER2 gene-amplified gastric cancer at present. However, the clinical significance of multi-targeting tyrosine kinase inhibitors (TKIs) in HER2-positive gastric cancer remains unclear.We examined the anti-tumor activity of lapatinib and afatinib, that are reversible and irreversible TKIs, in HER2 gene-amplified trastuzumab-sensitive and - resistant gastric cancer cells (GLM-1 and GLM-1HerR2) in vitro and in vivo.Afatinib inhibited the growth of GLM-1 and GLM-1HerR2 cells in vitro more efficiently than lapatinib by inducing GAfatinib could be a potential new molecular-targeted therapy for trastuzumab-sensitive and trastuzumab-resistant HER2 gene-amplified gastric cancers.
- Published
- 2019
68. A Simplified Approach of Open Boundary Conditions for the Smoothed Particle Hydrodynamics Method.
- Author
-
Thanh Tien Bui, Yoshihisa Fujita, and Susumu Nakata
- Subjects
HYDRODYNAMICS ,OPEN-channel flow ,VISCOUS flow ,FLOW visualization - Abstract
In this paper, we propose a simplified approach of open boundary conditions for particle-based fluid simulations using the weakly compressible smoothed-particle hydrodynamics (SPH) method. In this scheme, the values of the inflow/outflow particles are calculated as fluid particles or imposed desired values to ensure the appropriate evolution of the flow field instead of using a renormalization process involving the fluid particles. We concentrate on handling the generation of new inflow particles using several simple approaches that contribute to the flow field stability. The advantages of the d +. -SPH scheme, specifically the particle shifting technique, were successfully applied to correct the position, velocity, and pressure terms of the particles. Therefore, unexpected errors were removed and tensile instabilities of the particles were prevented. The proposed technique is validated for several benchmark test cases, and the tests showthat the results match the reference solutions well. A viscous open-channel flow is used to demonstrate the stability of the flow field during the computational time. Based on this stability, we compress the computational domain to a lower resolution in a second test case while preserving the accuracy of the simulation. Flow over a backward-facing step is used to highlight the challenges of inflow boundary conditions with prescribed or non-prescribed values. The developed technique is well suited to the wall boundaries and the evolution of the flow field. The results demonstrate the robustness and versatility of the proposed technique for a variety of simulations. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
69. Analytical Approach for Elucidation of Unique Deformation and Fracture Phenomena of Porous Metal under High-Speed Impact
- Author
-
Yuya Mitsutome, Hikaru Fujita, Keiko Watanabe, and Susumu Nakata
- Subjects
Porous metal ,Materials science ,Fracture (geology) ,Geotechnical engineering ,Deformation (meteorology) - Published
- 2016
- Full Text
- View/download PDF
70. Mechanisms of Tumor Growth Inhibition by Depletion of γ-Glutamylcyclotransferase (GGCT): A Novel Molecular Target for Anticancer Therapy
- Author
-
Susumu Nakata, Takahiro Isono, Keiko Taniguchi, Tatsuhiro Yoshiki, Kosei Ito, Susumu Kageyama, Tetsuya Yoshida, Hiromi, Tokuhiro Chano, Akihiro Kawauchi, Shigehisa Kubota, and Taku Yoshiya
- Subjects
0301 basic medicine ,autophagy ,Review ,Catalysis ,Gene Expression Regulation, Enzymologic ,Inorganic Chemistry ,lcsh:Chemistry ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Prostate ,Neoplasms ,C7orf24 ,Medicine ,cancer ,cellular senescence ,Humans ,Molecular Targeted Therapy ,Physical and Theoretical Chemistry ,Enzyme Inhibitors ,Molecular Biology ,lcsh:QH301-705.5 ,Spectroscopy ,chemistry.chemical_classification ,Urinary bladder ,Alanine ,business.industry ,Organic Chemistry ,Cancer ,GGCT ,General Medicine ,medicine.disease ,Computer Science Applications ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,030104 developmental biology ,Enzyme ,medicine.anatomical_structure ,chemistry ,lcsh:Biology (General) ,lcsh:QD1-999 ,030220 oncology & carcinogenesis ,Cancer cell ,Molecular targets ,Cancer research ,Tumor growth inhibition ,RNA Interference ,business ,gamma-Glutamylcyclotransferase - Abstract
γ-Glutamylcyclotransferase (GGCT), which is one of the major enzymes involved in glutathione metabolism, is upregulated in a wide range of cancers—glioma, breast, lung, esophageal, gastric, colorectal, urinary bladder, prostate, cervical, ovarian cancers and osteosarcoma—and promotes cancer progression; its depletion leads to the suppression of proliferation, invasion, and migration of cancer cells. It has been demonstrated that the suppression or inhibition of GGCT has an antitumor effect in cancer-bearing xenograft mice. Based on these observations, GGCT is now recognized as a promising therapeutic target in various cancers. This review summarizes recent advances on the mechanisms of the antitumor activity of GGCT inhibition.
- Published
- 2018
71. Automatic Generation of the Periodic Hair Motion of 3D Characters for Anime Production
- Author
-
Susumu Nakata and Kenji Furukawa
- Subjects
Set (abstract data type) ,Computer graphics ,Bunches ,Character (computing) ,Computer science ,Computer graphics (images) ,0202 electrical engineering, electronic engineering, information engineering ,Process (computing) ,020207 software engineering ,02 engineering and technology ,Animation ,Anime ,Motion (physics) - Abstract
Many Japanese animation products benefit from the techniques of computer graphics. In the animation process, three-dimensional (3D) characters are often rendered so that the characters move according to a Japanese traditional animation style called limited animation or anime. The hair of the characters is modeled as a set of bunches and the motion of each bunch should also be defined in the manner of limited animation, which is different from its physically correct motion. We present a method to produce a hair motion for 3D characters that is appropriate for limited animation under the assumptions that the hair motion is periodic and other objects, including the camera, remain stationary. We present a mathematical formulation of this hair motion based on a typical technique used in traditional hand-drawn anime and apply the motion to each bunch of hair of an example 3D character.
- Published
- 2018
- Full Text
- View/download PDF
72. Moving particle semi-implicit method for fluid simulation with implicitly defined deforming obstacles
- Author
-
Yasutomo Kanetsuki and Susumu Nakata
- Subjects
Fluid simulation ,Classical mechanics ,Particle ,Mathematics - Published
- 2015
- Full Text
- View/download PDF
73. Multiple myeloma cells adapted to long-exposure of hypoxia exhibit stem cell characters with TGF-β/Smad pathway activation
- Author
-
Susumu Nakata, Hideyo Hirai, Hisayuki Yao, Taira Maekawa, Yuki Toda, Yoko Nakagawa, Yasuo Miura, Eishi Ashihara, and Asumi Yokota
- Subjects
0301 basic medicine ,Biophysics ,SMAD ,Smad2 Protein ,Stem cell marker ,Biochemistry ,Immunophenotyping ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Mice, Inbred NOD ,Transforming Growth Factor beta ,Cell Line, Tumor ,medicine ,Biomarkers, Tumor ,Animals ,Humans ,Molecular Biology ,Multiple myeloma ,Cell Line, Transformed ,Chemistry ,SOXB1 Transcription Factors ,Stem Cells ,Cell Biology ,Nanog Homeobox Protein ,Hypoxia (medical) ,medicine.disease ,Survival Analysis ,Cell Hypoxia ,Transplantation ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cancer research ,Female ,Bone marrow ,medicine.symptom ,Stem cell ,Multiple Myeloma ,Octamer Transcription Factor-3 ,Neoplasm Transplantation ,Transforming growth factor ,Signal Transduction - Abstract
The emergence of new molecular targeting agents has improved the prognosis of patients with multiple myeloma (MM). However, MM remains incurable because MM stem cells are likely resistant to these agents. Thus, it is important to further investigate the biology of MM stem cells, which reside in the hypoxic bone marrow niche. In this study, we established and investigated the characteristics of hypoxia-adapted MM (HA-MM) cells, which could proliferate for more than six months under hypoxic conditions (1% O2). The G0 fraction of HA-MM cells was larger than that of parental MM cells under normoxic conditions (20% O2). HA-MM cells possess enhanced tumorigenicity in primary and secondary transplantation studies. HA-MM cells also exhibited increased mRNA levels of stem cell markers and an enhanced self-renewal ability, and thus demonstrated characteristics of MM stem cells. These cells overexpressed phosphorylated Smad2, and treatment with a transforming growth factor (TGF)-β/Smad signaling inhibitor decreased their clonogenicity in a replating assay. In conclusion, MM cells adapted to long-exposure of hypoxia exhibit stem cell characters with TGF-β/Smad pathway activation.
- Published
- 2017
74. Prohibitin-2 is a novel regulator of p21
- Author
-
Keiko, Taniguchi, Kengo, Matsumura, Susumu, Kageyama, Hiromi, Ii, Eishi, Ashihara, Tokuhiro, Chano, Akihiro, Kawauchi, Tatsuhiro, Yoshiki, and Susumu, Nakata
- Subjects
Cyclin-Dependent Kinase Inhibitor p21 ,Enzyme Activation ,Gene Expression Regulation, Neoplastic ,Repressor Proteins ,Prohibitins ,MCF-7 Cells ,Humans ,Neoplasms, Experimental ,gamma-Glutamylcyclotransferase ,Protein Binding - Abstract
Previous studies show that gamma-glutamylcyclotransferase (GGCT) is expressed at high levels in various cancer tissues and that its knockdown inhibits MCF7 cancer cell growth via upregulation of p21
- Published
- 2017
75. A Novel Prodrug of a γ-Glutamylcyclotransferase Inhibitor Suppresses Cancer Cell Proliferation in vitro and Inhibits Tumor Growth in a Xenograft Mouse Model of Prostate Cancer
- Author
-
Tatsuhiro Yoshiki, Keiko Taniguchi, Susumu Kageyama, Masayoshi Mochizuki, Taku Yoshiya, Yuji Nishiuchi, Kosei Ito, Shugo Tsuda, Susumu Nakata, Hiromi, Yuko Tsuda, and Koushi Hidaka
- Subjects
0301 basic medicine ,Male ,Antineoplastic Agents ,Mice, SCID ,Biochemistry ,Cell Line ,Glutarates ,03 medical and health sciences ,Prostate cancer ,Structure-Activity Relationship ,0302 clinical medicine ,Cell Line, Tumor ,Drug Discovery ,medicine ,Animals ,Humans ,Tumor growth ,Prodrugs ,General Pharmacology, Toxicology and Pharmaceutics ,Cell Proliferation ,Pharmacology ,chemistry.chemical_classification ,Alanine ,Chemistry ,Cancer cell proliferation ,Organic Chemistry ,Prostatic Neoplasms ,Dipeptides ,Prodrug ,medicine.disease ,In vitro ,030104 developmental biology ,Enzyme ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,Molecular Medicine ,Heterografts ,Human cancer ,gamma-Glutamylcyclotransferase - Abstract
γ-Glutamylcyclotransferase (GGCT) depletion inhibits cancer cell proliferation. However, whether the enzymatic activity of GGCT is critical for the regulation of cancer cell growth remains unclear. In this study, a novel diester-type cell-permeable prodrug, pro-GA, was developed based on the structure of N-glutaryl-l-alanine (GA), by structure optimization using temporary fluorophore-tagged prodrug candidates. The antiproliferative activity of pro-GA was demonstrated using GGCT-overexpressing NIH-3T3 cells and human cancer cells including MCF7, HL-60, and PC3 cells. By contrast, normal cells were not significantly affected by pro-GA treatment. Moreover, pro-GA administration exhibited anticancer effects in a xenograft model using immunocompromised mice inoculated with PC3 cells. These results indicate that the enzymatic activity of GGCT accelerates tumor growth and that GGCT inhibition is a promising therapeutic strategy for the treatment of GGCT-overexpressing tumors.
- Published
- 2017
76. Efficacy of Combination Therapy with MET and VEGF Inhibitors for MET-overexpressing Glioblastoma
- Author
-
Takeshi Okuda, Shuichi Izumoto, Kimihiro Yamashita, Mitsugu Fujita, Susumu Nakata, Takayuki Tasaki, Hiromasa Yoshioka, and Amami Kato
- Subjects
0301 basic medicine ,Vascular Endothelial Growth Factor A ,Cancer Research ,Small interfering RNA ,Epithelial-Mesenchymal Transition ,Combination therapy ,Bevacizumab ,Angiogenesis ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Glioma ,Cell Line, Tumor ,Medicine ,Animals ,Humans ,RNA, Small Interfering ,Cell growth ,business.industry ,Brain Neoplasms ,Drug Synergism ,General Medicine ,Transfection ,Proto-Oncogene Proteins c-met ,medicine.disease ,Xenograft Model Antitumor Assays ,nervous system diseases ,Up-Regulation ,Vascular endothelial growth factor ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Treatment Outcome ,Oncology ,chemistry ,030220 oncology & carcinogenesis ,Cancer research ,business ,Glioblastoma ,medicine.drug - Abstract
Background Glioblastoma multiforme (GBM) is a malignant brain tumor with an extremely poor prognosis. GBM tissues frequently express mesenchymal-epithelial transition factor (MET), which induces cell division, growth and migration. In addition, angiogenesis is a significant feature of GBM, attributable to the overexpression of vascular endothelial growth factor (VEGF). Although the VEGF inhibitor bevacizumab was recently highlighted as the second-line drug for GBM treatment, GBMs often recur even with bevacizumab therapy. Based on these findings, we hypothesized that inhibition of both MET and VEGF would exhibit a synergistic effect on MET-overexpressing GBM. Materials and methods As we observed MET expression at high levels in some patients with GBM, we designed GL261 murine glioma-based experiments. GL261 cells were transfected with siRNAs specific for MET and VEGF in vitro, and the cell growth ratios were evaluated. Simultaneously, transfected GL261 cells were transplanted into the brain of C57BL/6 mice, and their survival was monitored. Results GBM tissues frequently overexpressed MET protein at high levels compared with lower-grade gliomas. These GBMs at first responded to bevacizumab, but often eventually recurred. When GL261 cells were co-transfected with both MET-specific siRNA and VEGF-specific siRNA, the in vitro tumor cell growth significantly decelerated compared to single siRNA transfection. Consistently, when mice were transplanted with co-transfected GL261 cells, their survival was significantly prolonged compared to those given cells transfected with single siRNA. Conclusion The current data indicate that the inhibition of both MET and VEGF exhibits efficient therapeutic effects of GBM-bearing hosts.
- Published
- 2017
77. Intra-hippocampal injection with mouse bone marrow-derived microglia-like cells contribute to amyloid-β clearance and improvement of memorial dysfunction in a mouse model of Alzheimer's disease
- Author
-
Yoshihisa Kitamura, Shohei Kawanishi, Yugo Chisaki, Kazuyuki Takata, Yoshitaka Yano, Yuki Toda, Susumu Nakata, and Eishi Ashihara
- Subjects
Pathology ,medicine.medical_specialty ,medicine.anatomical_structure ,Amyloid β ,Microglia ,business.industry ,Applied Mathematics ,General Mathematics ,Medicine ,Disease ,Bone marrow ,Hippocampal formation ,business - Published
- 2019
- Full Text
- View/download PDF
78. Compressive properties of cell structures with cell shape anisotropy
- Author
-
Keiko Watanabe, Susumu Nakata, Kohei Tateyama, Nagahisa Ogasawara, and Hiroyuki Yamada
- Subjects
Materials science ,medicine.anatomical_structure ,Cell ,medicine ,Composite material ,Cell shape ,Anisotropy - Published
- 2019
- Full Text
- View/download PDF
79. Intimo-Intimal Intussusception: A Rare Form of Common Carotid Artery Dissection
- Author
-
Mitsugu Fujita, Kazunari Shintai, Susumu Nakata, Yukio Seki, Norikazu Hatano, and Nagako Maeda
- Subjects
medicine.medical_specialty ,Common carotid artery dissection ,business.industry ,Arterial Embolization ,Varicocele ,medicine.disease ,Surgery ,Peripheral ,Intussusception (medical disorder) ,Occlusion ,Varicose veins ,medicine ,Radiology, Nuclear Medicine and imaging ,Radiology ,Differential diagnosis ,medicine.symptom ,Cardiology and Cardiovascular Medicine ,business - Abstract
clinical indications of the EOS device include management of venous (eg, varicocele, ovarian varices, varicose veins) and arterial (eg, emergency arterial embolization in trauma patients) conditions. As no late imaging was obtained in the present case, durable occlusion with the EOS device could be assessed in future studies. To conclude, the EOS may provide a safe and reliable method of immediate vessel occlusion in the peripheral arterial circulation. Its shortand long-term clinical efficacy in patients remains a subject for future research.
- Published
- 2015
- Full Text
- View/download PDF
80. Stigma evaluation for diabetes and other chronic non‐communicable disease patients: Development, validation and clinical use of stigma scale – The Kanden Institute Stigma Scale
- Author
-
Nagaaki Tanaka, Yoshiyuki Hamamoto, Yuri Kurotobi, Yuji Yamazaki, Susumu Nakatani, Miho Matsubara, Takuya Haraguchi, Yuko Yamaguchi, Kiyohiro Izumi, Yuki Fujita, Hitoshi Kuwata, Takanori Hyo, Masaki Yanase, Masahiro Matsuda, Shinji Negoro, Hiroko Higashiyama, Yuichiro Yamada, Takeshi Kurose, and Yutaka Seino
- Subjects
Advocacy ,Chronic disease ,Stigma ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
Abstract Aims/Introduction The aim of this study was to develop a scale to evaluate disease stigma in patients with lifestyle‐related chronic non‐communicable diseases (LCNCDs), which we named the Kanden Institute Stigma Scale (KISS), and to consider its possible clinical application for patients with diabetes. Materials and methods An initial 90 questions were drafted and categorized into six subscales according to the manifestations of stigma. The final version of the KISS was developed as a 24‐item questionnaire comprising four items for each subscale. Results A total of 539 outpatients including 452 patients with diabetes and 87 patients without diabetes were recruited. Construct validity was confirmed by assessing the correlation with previously established measures. Confirmatory factor analysis showed the KISS to have good model fitness (adjusted goodness‐of‐fit index = 0.856). Test–retest reproducibility analysis showed that the intraclass coefficient of the first and a second KISS was 0.843 (P
- Published
- 2022
- Full Text
- View/download PDF
81. Large-Scale Simulation of Electromagnetic Wave Propagation Using Meshless Time Domain Method With Parallel Processing
- Author
-
Yuta Hirokawa, Susumu Nakata, Yoshihisa Fujita, Taku Itoh, Soichiro Ikuno, and Atsushi Kamitani
- Subjects
Computer Science::Performance ,CUDA ,Speedup ,Scale (ratio) ,Parallel processing (DSP implementation) ,Wave propagation ,Computer science ,Computation ,Time evolution ,Time domain ,Electrical and Electronic Engineering ,Electronic, Optical and Magnetic Materials ,Computational science - Abstract
The large-scale simulation of the electromagnetic wave propagation using meshless time domain method (MTDM) is numerically investigated. Moreover, compute unified device architecture (CUDA) and OpenMP is adopted for parallelization technique to reduce the computation time. The results of computation show that the execution time of the time evolution calculation on GPU is 8.8 time faster than that of CPU. In addition, the execution time of the shape function generation procedure can be speedup about 7842 times by proposed scheme and OpenMP.
- Published
- 2013
- Full Text
- View/download PDF
82. MET Expressed in Glioma Stem Cells Is a Potent Therapeutic Target for Glioblastoma Multiforme
- Author
-
Takayuki, Tasaki, Mitsugu, Fujita, Takeshi, Okuda, Azusa, Yoneshige, Susumu, Nakata, Kimihiro, Yamashita, Hiromasa, Yoshioka, Shuichi, Izumoto, and Amami, Kato
- Subjects
Male ,Brain Neoplasms ,Pyridines ,Antineoplastic Agents ,Mice, SCID ,Middle Aged ,Proto-Oncogene Proteins c-met ,Proto-Oncogene Mas ,Xenograft Model Antitumor Assays ,Crizotinib ,Mice, Inbred NOD ,Neoplastic Stem Cells ,Animals ,Humans ,Pyrazoles ,Female ,Molecular Targeted Therapy ,Glioblastoma - Abstract
Glioblastoma multiforme (GBM) is the most frequent and the most malignant tumor among adult brain tumors. Previous reports led us to hypothesize that the proto-oncogene mesenchymal-epithelial transition (MET) expressed in glioma stem cell-like cells (GSCs) would be a potent therapeutic target for GBM.To address this question, we analyzed 113 original samples of tumors from patients based on immunohistochemistry. During this process, we were able to establish GSC lines from patients with GBM that were MET-positive and MET-negative. Using these cells, we tested the therapeutic impact of a MET inhibitor, crizotinib, both in vitro and in vivo.Patients with MET-positive GBM exhibited poor survival. GSC-based experiments revealed that treatment with crizotinib, both in vitro and in vivo, exhibited therapeutic efficacy particularly against MET-positive GSCs.Based on these findings, we conclude that MET expressed in GSCs might be a potent therapeutic target for GBM.
- Published
- 2016
83. Smoothed particle hydrodynamics method with partially defined fluid particles
- Author
-
John C. Wells, Susumu Nakata, and Yasutomo Kanetsuki
- Subjects
Smoothed-particle hydrodynamics ,Fluid simulation ,General Mathematics ,0202 electrical engineering, electronic engineering, information engineering ,General Engineering ,020207 software engineering ,010103 numerical & computational mathematics ,02 engineering and technology ,Mechanics ,0101 mathematics ,01 natural sciences ,Mathematics - Published
- 2016
- Full Text
- View/download PDF
84. LGR5 is a Marker of Poor Prognosis in Glioblastoma and is Required for Survival of Brain Cancer Stem-Like Cells
- Author
-
Bernhard Radlwimmer, Benito Campos, Christel Herold-Mende, Stefan Momma, Violaine Goidts, Felix Engel, Justo Lorenzo Bermejo, Natalia Becker, Josephine Bageritz, Peter Lichter, Susumu Nakata, and Till Acker
- Subjects
General Neuroscience ,LGR5 ,Wnt signaling pathway ,Biology ,medicine.disease ,medicine.disease_cause ,Stem cell marker ,Pathology and Forensic Medicine ,Intestinal mucosa ,Cancer stem cell ,Glioma ,medicine ,Cancer research ,Gene silencing ,Neurology (clinical) ,Carcinogenesis - Abstract
In various types of cancers including glioblastoma, accumulating evidence show the existence of cancer stem-like cells (CSCs), characterized by stem cell marker expression, capability of differentiation and self-renewal, and high potential for tumor propagation in vivo. LGR5, whose expression is positively regulated by the Wnt signaling pathway, is a stem cell marker in intestinal mucosa and hair follicle in the skin. As Wnt signaling is also involved in brain development, the function of LGR5 in the maintenance of brain CSCs is to be assessed. Our study showed that the LGR5 transcript level was increased in CSCs. Co-immunofluorescence staining demonstrated the co-localization of CD133- and LGR5-positive cells in glioblastoma tissue sections. Functionally, silencing of LGR5 by lentiviral shRNA-mediated knockdown induced apoptosis in brain CSCs. Moreover, LGR5 depletion led to a downregulation of L1 cell adhesion molecule expression. In line with an important function in glioma tumorigenesis, LGR5 expression increased with glioma progression and correlated with an adverse outcome. Our findings suggest that LGR5 plays a role in maintenance and/or survival of brain CSCs.
- Published
- 2012
- Full Text
- View/download PDF
85. Iterative Solver for Linear System Obtained by Edge Element: Variable Preconditioned Method With Mixed Precision on GPU
- Author
-
N. Fujita, Taku Itoh, Susumu Nakata, Soichiro Ikuno, Y. Kawaguchi, and Kota Watanabe
- Subjects
CUDA ,Iterative method ,Computer science ,Linear system ,Graphics processing unit ,Double-precision floating-point format ,Krylov subspace ,Electrical and Electronic Engineering ,Solver ,Residual ,Electronic, Optical and Magnetic Materials ,Computational science - Abstract
The variable preconditioned (VP) Krylov subspace method with mixed precision is implemented on graphics processing unit (GPU) using compute unified device architecture (CUDA), and the linear system obtained from the edge element is solved by means of the method. The VPGCR method has the sufficient condition for the convergence. This sufficient condition leads us that the residual equation for the preconditioned procedure of VPGCR can be solved in the range of single precision. To stretch the sufficient condition, we propose the hybrid scheme of VP Krylov subspace method that uses single and double precision operations. The results of computations show that VPCG with mixed precision on GPU demonstrated significant achievement than that of CPU. Especially, VPCG-JOR on GPU with mixed precision is 41.853 times faster than that of VPCG-CG on CPU.
- Published
- 2012
- Full Text
- View/download PDF
86. Real-time isosurface rendering of smooth fields
- Author
-
Kyoko Hasegawa, Satoshi Tanaka, Ryosuke Makino, Susumu Nakata, and Shohei Aoyama
- Subjects
Computer science ,business.industry ,Computation ,Graphics hardware ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Parallel algorithm ,Condensed Matter Physics ,Standard technique ,3D rendering ,Rendering (computer graphics) ,Visualization ,Computer Science::Graphics ,Computer graphics (images) ,Isosurface ,Electrical and Electronic Engineering ,business ,ComputingMethodologies_COMPUTERGRAPHICS - Abstract
This paper presents a new technique for real-time isosurface visualization of three-dimensional smooth fields. This technique enables direct isosurface rendering of smoothly defined fields without generating intermediate polygon models as used in the marching-cube algorithm, a standard technique for isosurface extraction. We developed a parallel algorithm that is suitable for effective computation on graphics hardware by converting any field to a set of polynomials, enabling the detection of intersections between rays and isosurfaces at arbitrary isovalue with small computational cost. In addition, the isovalue to be rendered can be changed in real time, because the algorithm is not restricted to a specific isovalue. The technique can also be applied to the problem of the direct rendering of implicit surfaces that are defined as isosurfaces of smoothly defined fields.
- Published
- 2011
- Full Text
- View/download PDF
87. RNAi screening in glioma stem-like cells identifies PFKFB4 as a key molecule important for cancer cell survival
- Author
-
Laura Puccio, Bernhard Radlwimmer, Peter Lichter, E Van Schaftingen, Sebastian Barbus, Marc Zapatka, Josephine Bageritz, Susumu Nakata, Stefan Momma, Christel Herold-Mende, Grischa Toedt, Andrey Korshunov, Guido Reifenberger, Benito Campos, and V. Goidts
- Subjects
Cancer Research ,Cell Survival ,Phosphofructokinase-2 ,Brain tumor ,PKM2 ,Biology ,Bioinformatics ,Adenosine Triphosphate ,RNA interference ,Glioma ,Genetics ,medicine ,Humans ,Kinome ,Lactic Acid ,RNA, Small Interfering ,Molecular Biology ,Cell Death ,Brain Neoplasms ,Kinase ,Lentivirus ,Cancer ,Prognosis ,medicine.disease ,Gene Expression Regulation, Neoplastic ,Isoenzymes ,Cancer cell ,Neoplastic Stem Cells ,Cancer research ,RNA Interference ,Glycolysis - Abstract
The concept of cancer stem-like cells (CSCs) has gained considerable attention in various solid tumors including glioblastoma, the most common primary brain tumor. This sub-population of tumor cells has been intensively investigated and their role in therapy resistance as well as tumor recurrence has been demonstrated. In that respect, development of therapeutic strategies that target CSCs (and possibly also the tumor bulk) appears a promising approach in patients suffering from primary brain tumors. In the present study, we utilized RNA interference (RNAi) to screen the complete human kinome and phosphatome (682 and 180 targets, respectively) in order to identify genes and pathways relevant for the survival of brain CSCs and thereby potential therapeutical targets for glioblastoma. We report of 46 putative candidates including known survival-related kinases and phosphatases. Interestingly, a number of genes identified are involved in metabolism, especially glycolysis, such as PDK1 and PKM2 and, most prominently PFKFB4. In vitro studies confirmed an essential role of PFKFB4 in the maintenance of brain CSCs. Furthermore, high PFKFB4 expression was associated with shorter survival of primary glioblastoma patients. Our findings support the importance of the glycolytic pathway in the maintenance of malignant glioma cells and brain CSCs and imply tumor metabolism as a promising therapeutic target in glioblastoma.
- Published
- 2011
- Full Text
- View/download PDF
88. Parallel Algorithm for Meshfree Radial Point Interpolation Method on Graphics Hardware
- Author
-
Soichiro Ikuno, Norihisa Fujita, Susumu Nakata, and Yu Takeda
- Subjects
Coprocessor ,Computer science ,Graphics hardware ,Numerical analysis ,Linear system ,Parallel algorithm ,Graphics processing unit ,Electronic, Optical and Magnetic Materials ,Computational science ,symbols.namesake ,CUDA ,Computer Science::Graphics ,Dirichlet boundary condition ,symbols ,Boundary value problem ,Electrical and Electronic Engineering ,Graphics ,ComputingMethodologies_COMPUTERGRAPHICS ,Interpolation - Abstract
This study provides a parallel algorithm for meshfree analysis based on the radial point interpolation method. This algorithm is designed to suit graphics hardware that support compute unified device architecture, NVIDIA's software development environment on graphics processing units (GPUs). The radial point interpolation method is a meshfree method that enables strict imposition of Dirichlet boundary conditions, and it mainly consists of two steps: the process for assembly of the discrete linear system and the process for solving the linear system. This paper shows that both the processes can be performed effectively on the GPU by applying our parallel algorithm and at the same time, the costs for data transfer to and from the GPU can be reduced, because the processes related to the discrete linear system are performed independently on the GPU. Our numerical tests confirm that the algorithm performed on the GPU accelerates the computations by a factor of maximum 15.
- Published
- 2011
- Full Text
- View/download PDF
89. A gene signature distinguishing CD133hi from CD133- colorectal cancer cells: essential role for EGR1 and downstream factors
- Author
-
Steffen Schmitt, Peter Lichter, Maximilian Aigner, Bernhard Radlwimmer, Moritz Koch, Jülrgen Weitz, Magdalena Schlotter, Felix Engel, Gunnar Steinert, Nuh N. Rahbari, Matthias Kloor, Aurélie Ernst, Karsten Brand, and Susumu Nakata
- Subjects
endocrine system ,Colorectal cancer ,Biology ,Stem cell marker ,Receptors, G-Protein-Coupled ,Pathology and Forensic Medicine ,Metastasis ,Epitopes ,Antigens, CD ,Cell Line, Tumor ,Biomarkers, Tumor ,medicine ,Humans ,AC133 Antigen ,RNA, Messenger ,RNA, Neoplasm ,neoplasms ,Early Growth Response Protein 1 ,Glycoproteins ,Reverse Transcriptase Polymerase Chain Reaction ,Gene Expression Profiling ,Liver Neoplasms ,Wnt signaling pathway ,LGR5 ,Flow Cytometry ,medicine.disease ,Gene expression profiling ,Cancer research ,Immunohistochemistry ,Microsatellite Instability ,Stem cell ,Colorectal Neoplasms ,Peptides ,Signal Transduction - Abstract
Summary Aims In colorectal cancer (CRC), CD133 expression is an independent prognostic marker associated with adverse clinical outcome. The CD133 epitope AC133 allowed isolating stem cells from normal and cancerous tissues, although its use in colon was questioned. We aimed to identify differences between AC133 hi and AC133 - cells. Methods We analysed the gene expression profiles of EpCAM + /CEA + /AC133 hi and EpCAM + /CEA + /AC133 - cells from primary CRC and liver metastasis tissues (n = 5). Immunohistochemistry confirmed these results in a validation set. Results We identified 68 genes differentially expressed between both populations, including genes of notorious importance in CRC pathogenesis, and several candidates not previously shown to play a major role in CRC. Notably, EGR1 belonged to the most highly expressed genes in AC133 hi cells. In the validation set, the presence of EGR1 and CD133 correlated (r = 0.625). Since EGR1 regulates Wnt through up-regulation of TCF4, which induces stem cell marker LGR5, the potential association between LGR5, EGR1 and CD133 was investigated. The presence of LGR5 correlated with the presence of EGR1 and CD133. Strong signals for LGR5 were detected throughout tumour invasion fronts. Conclusions The study suggests a connection between CD133 and EGR1 and emphasises the importance of the EGR1/TCF4/CD133/LGR5 network in CRC.
- Published
- 2011
- Full Text
- View/download PDF
90. Data fitting independent of grid structure using a volumic version of MPU
- Author
-
Seiji Inoue, Shuhei Kawashima, Kyoko Hasegawa, Yuusuke Tsukamoto, Shinji Kataoka, Satoshi Tanaka, Susumu Nakata, Shin Ito, and Kazuyuki Kojima
- Subjects
Partition of unity ,Scalar (mathematics) ,Curve fitting ,Trilinear interpolation ,Geometry ,Electrical and Electronic Engineering ,Graphics ,Condensed Matter Physics ,Grid ,Scalar field ,Computational science ,Regular grid ,Mathematics - Abstract
Volume graphics is a key technology in fields such as fluid dynamics and medical science. The visualization of volume data requires the creation of a continuous scalar field to exactly or approximately interpolate scalar values assigned to the discrete voxels. In the present paper, we propose a method that we refer to as the volumic version of the multi-level partition of unity (volumic MPU). The method approximately interpolates the scalar values with good precision to generate a scalar field that is continuous up to second-order differentiation. The volumic MPU, being independent of grid structures of input volume data, is applicable to both irregular-grid data and regular grid data. The volumic MPU can also be used as an effective data-compression technique. The speed to evaluate the created scalar field is almost as high as that of trilinear interpolation.
- Published
- 2011
- Full Text
- View/download PDF
91. MESHFREE ELASTODYNAMIC ANALYSIS OF THREE-DIMENSIONAL SOLIDS USING RADIAL POINT INTERPOLATION METHOD
- Author
-
Satoshi Tanaka, Kyoko Hasegawa, and Susumu Nakata
- Subjects
Matrix (mathematics) ,Diffuse element method ,Partial differential equation ,Modeling and Simulation ,Mathematical analysis ,Meshfree methods ,Mass matrix ,Computer Science Applications ,Interpolation ,Stiffness matrix ,Mathematics ,Numerical integration - Abstract
Meshfree methods are effective tools for solving partial differential equations. The radial point interpolation method, a partial differential equation solver based on a meshfree approach, enables accurate imposition of displacement boundary conditions and has been successfully applied to elastostatic analysis of various kinds of three-dimensional solids. In this method, stiffness matrix construction accounts for the majority of CPU time required for the entire process, resulting in high computational costs, especially when higher-order numerical integration is applied for accurate matrix construction. An alternative method, modified radial point interpolation, was proposed to overcome this shortcoming and has accomplished fast computation of elastostatic solid analysis. The purpose of this study is to develop an algorithm for time-dependent simulation of three-dimensional elastic solids. We show that the modified radial point interpolation method also accelerates the construction of the mass matrix required for time-dependent analysis in addition to that of the stiffness matrix. In our approach, the problem domain is assumed to have an implicit function representation that can be constructed from a set of surface points measured using a three-dimensional scanning system. Several numerical tests for elastodynamic analysis of complex shape models are presented.
- Published
- 2011
- Full Text
- View/download PDF
92. GRID-INDEPENDENT METROPOLIS SAMPLING FOR VOLUME VISUALIZATION
- Author
-
Susumu Nakata, Koji Koyamada, Frederika Rambu Ngana, Hideo Nakajima, Satoshi Tanaka, Takuma Kawamura, Takuya Hatta, Kyoko Hasegawa, and Naohisa Sakamoto
- Subjects
Metropolis–Hastings algorithm ,Modeling and Simulation ,Computer graphics (images) ,Monte Carlo method ,Image plane ,Space partitioning ,Grid ,Algorithm ,Importance sampling ,Computer Science Applications ,Rendering (computer graphics) ,Mathematics ,Visualization - Abstract
We propose a method of sampling regular and irregular-grid volume data for visualization. The method is based on the Metropolis algorithm that is a type of Monte Carlo technique. Our method enables "importance sampling" of local regions of interest in the visualization by generating sample points intensively in regions where a user-specified transfer function takes the peak values. The generated sample-point distribution is independent of the grid structure of the given volume data. Therefore, our method is applicable to irregular grids as well as regular grids. We demonstrate the effectiveness of our method by applying it to regular cubic grids and irregular tetrahedral grids with adaptive cell sizes. We visualize volume data by projecting the generated sample points onto the 2D image plane. We tested our sampling with three rendering models: an X-ray model, a simple illuminant particle model, and an illuminant particle model with light-attenuation effects. The grid-independency and the efficiency in the parallel processing mean that our method is suitable for visualizing large-scale volume data. The former means that the required number of sample points is proportional to the number of 2D pixels, not the number of 3D voxels. The latter means that our method can be easily accelerated on the multiple-CPU and/or GPU platforms. We also show that our method can work with adaptive space partitioning of volume data, which also enables us to treat large-scale/complex volume data easily.
- Published
- 2010
- Full Text
- View/download PDF
93. A Real-Time Near-Infrared Fluorescence Imaging Method for the Detection of Oral Cancers in Mice Using an Indocyanine Green–Labeled Podoplanin Antibody
- Author
-
Hayao Nakanishi, Shunko Albano Inada, Kenji Yoshida, Yasushi Yatabe, Yukinari Kato, Akihiro Ito, Toshio Kato, Mitsuo Goto, Mitsuhiko Ohta, Norio Kaneda, Susumu Nakata, and Kenichi Kurita
- Subjects
Indocyanine Green ,0301 basic medicine ,Cancer Research ,Near-Infrared Fluorescence Imaging ,Fluorescence-lifetime imaging microscopy ,Pathology ,medicine.medical_specialty ,Mice, Nude ,Metastasis ,near-infrared fluorescence imaging ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Animals ,Humans ,Medicine ,NZ-1 antibody ,Early Detection of Cancer ,Membrane Glycoproteins ,Squamous Cell Carcinoma of Head and Neck ,business.industry ,Optical Imaging ,Antibodies, Monoclonal ,Oral Neoplasm ,medicine.disease ,Molecular Imaging ,oral squamous cell carcinoma ,podoplanin ,stomatognathic diseases ,Autofluorescence ,030104 developmental biology ,Oncology ,chemistry ,Podoplanin ,030220 oncology & carcinogenesis ,Heterografts ,Original Article ,Mouth Neoplasms ,business ,Indocyanine green ,Preclinical imaging - Abstract
Podoplanin is distinctively overexpressed in oral squamous cell carcinoma than oral benign neoplasms and plays a crucial role in the pathogenesis and metastasis of oral squamous cell carcinoma but its diagnostic application is quite limited. Here, we report a new near-infrared fluorescence imaging method using an indocyanine green (ICG)-labeled anti-podoplanin antibody and a desktop/a handheld ICG detection device for the visualization of oral squamous cell carcinoma-xenografted tumors in nude mice. Both near-infrared imaging methods using a desktop (in vivo imaging system: IVIS) and a handheld device (photodynamic eye: PDE) successfully detected oral squamous cell carcinoma tumors in nude mice in a podoplanin expression-dependent manner with comparable sensitivity. Of these 2 devices, only near-infrared imaging methods using a handheld device visualized oral squamous cell carcinoma xenografts in mice in real time. Furthermore, near-infrared imaging methods using the handheld device (PDE) could detect smaller podoplanin-positive oral squamous cell carcinoma tumors than a non-near-infrared, autofluorescence-based imaging method. Based on these results, a near-infrared imaging method using an ICG-labeled anti-podoplanin antibody and a handheld detection device (PDE) allows the sensitive, semiquantitative, and real-time imaging of oral squamous cell carcinoma tumors and therefore represents a useful tool for the detection and subsequent monitoring of malignant oral neoplasms in both preclinical and some clinical settings.
- Published
- 2018
- Full Text
- View/download PDF
94. Reconstruction of Kyoto of the Edo era based on arts and historical documents: 3D urban model based on historical GIS data
- Author
-
Takuya Okumura, Yoshihiro Kosaka, Masakazu Sawai, Susumu Nakata, Yuzuru Isoda, Akihiro Tsukamoto, Satoshi Tanaka, and Keiji Yano
- Subjects
Human-Computer Interaction ,Point data ,General Computer Science ,Computer science ,General Arts and Humanities ,Polygon ,3d model ,Line (text file) ,Urban model ,The arts ,Cartography - Abstract
This paper explores a method for creating large-scale urban 3D models using Historical GIS data. The method is capable of automatically generating realistic VR models based on GIS data at a low cost. 3D models of houses are created from polygon data, fences from line data, and pedestrians and trees from point data. The method is applied to the Virtual Kyoto Project in which the landscape of the whole city of Kyoto of the early Edo era (ca 17C) is reconstructed.
- Published
- 2009
- Full Text
- View/download PDF
95. Stochastic visualization of intersection curves of implicit surfaces
- Author
-
Ayumu Saitoh, Susumu Nakata, Yoshitomo Jo, Kyoko Hasegawa, Akihiro Shibata, Satoshi Tanaka, Akinori Kimura, and Masafumi Oka
- Subjects
Surface (mathematics) ,Curvilinear coordinates ,business.industry ,Intersection curve ,General Engineering ,Computer Graphics and Computer-Aided Design ,Visualization ,Human-Computer Interaction ,Intersection ,Section (archaeology) ,Point (geometry) ,Computer vision ,Artificial intelligence ,Graphics ,business ,Algorithm ,ComputingMethodologies_COMPUTERGRAPHICS ,Mathematics - Abstract
We propose a stochastic method to visualize intersection curves of complex implicit surfaces. Our method performs a stochastic 'uniform search' on an implicit surface to visualize its intersection curves, which scatter over the whole surface disconnectedly. The method also offers the capability to perform an efficient 'intensive search' that enables quick investigation of only a part of interest on an implicit surface. The method generates high-density points on intersection curves. This realizes precise visualization of the curves with point-based graphics. The visualization precision realized by our method is higher than that of the conventional intersection-finding/visualizing methods, e.g., the marching methods. Our method is also applicable to precise visualization of contours based on general curvilinear coordinates. This can help our visual understanding of rough/fine structures of complex implicit surfaces. To demonstrate effectiveness of the method, we apply it to complex implicit surfaces that approximate data sets of 10^5 or 10^6 3D points.
- Published
- 2007
- Full Text
- View/download PDF
96. Probing for electrical inclusions with complex spherical waves
- Author
-
Takanori Ide, Susumu Nakata, Hiroshi Isozaki, Gunther Uhlmann, and Samuli Siltanen
- Subjects
Convex hull ,Maple ,Applied Mathematics ,General Mathematics ,Hyperbolic geometry ,Mathematical analysis ,engineering.material ,Dirichlet distribution ,symbols.namesake ,Distribution function ,Electrical resistivity and conductivity ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,engineering ,symbols ,Ball (mathematics) ,Electrical conductor ,Mathematics - Abstract
application/pdf, Let a physical body in 2 or 3 be given. Assume that the electric conductivity distribution inside consists of conductive inclusions in a known smooth background. Further, assume that a subset is available for boundary measurements. It is proved using hyperbolic geometry that certain information about the location of the inclusions can be exactly recovered from static electric measurements on . More precisely: given a ball B with center outside the convex hull of and satisfying ( ) , boundary measurements on with explicitly given Dirichlet data are enough to determine whether B intersects the inclusion. An approximate detection algorithm is introduced based on the theory. Numerical experiments in dimension two with simulated noisy data suggest that the algorithm finds the inclusion-free domain near and is robust against measurement noise.
- Published
- 2007
- Full Text
- View/download PDF
97. Polygonization of High-Density and Large-Scale Point Data Based on a Repulsive-Force Particle System on Implicit Surface
- Author
-
Masafumi Oka, Satoshi Tanaka, Kazuyuki Kojima, Akihiro Shibata, and Susumu Nakata
- Subjects
Point data ,Surface (mathematics) ,Particle system ,Physics ,Scale (ratio) ,High density ,Geometry - Abstract
複雑な陰関数曲面の高品位な可視化のためには,陰関数曲面を正三角形に近いポリゴン・メッシュに分割することが必要である.そのためには,ポリゴンの頂点となる陰関数曲面上のサンプル点群において,隣接点間の距離を一様にする必要がある.隣接点間距離を一様にするための有効な方法としては,粒子拡散法が知られている.Meyerらは粒子拡散法に効率的な反発力を適用した.しかしながら,彼らの手法は高密度・大量点群に適用された場合には計算の効率が悪い.本論文の目的は,高密度・大量点群に対する新しい反発力を提案し,これにより正三角形に近いポリゴンを生成することである.数値実験の結果は,提案手法を適用した場合,Meyerらの手法と比較して,正三角形に近いポリゴンが多数生成されることを示している.さらに,提案手法はより高速に点群を分布させることも可能である.
- Published
- 2007
- Full Text
- View/download PDF
98. Optimization and simplification of dynamic scripting with evolution strategy and fuzzy control in a fighting game AI
- Author
-
Ruck Thawonmas, Yasutomo Kanetsuki, and Susumu Nakata
- Subjects
Set (abstract data type) ,SIMPLE (military communications protocol) ,Action (philosophy) ,Process (engineering) ,Scripting language ,Computer science ,business.industry ,Artificial intelligence ,Fuzzy control system ,Evolution strategy ,computer.software_genre ,business ,computer - Abstract
We develop a combination of evolution strategy (ES) and fuzzy control (FC) to optimize and simplify an existing dynamic scripting (DS) AI called CodeMonkey for fighting game FightingICE, recently used as a platform in international game AI competitions. One of the major issues in DS is that the user has to decide a lot of parameters whose process is not simple. In addition, a complex user-defined-action-rule set for DS is required. The purpose of our work is to automate this troublesome process and improve the performance of the DS technique. We apply (1+1)-ES with the one-fifth rule for tuning parameters and FC for easing definition of additional action rules. We verify our AI's performance in FightingICE. The test results show that although the proposed AI does not require complex parameter and rule setting by the user, it defeats the original CodeMonkey.
- Published
- 2015
- Full Text
- View/download PDF
99. LGR5 as Marker in Brain Cancer
- Author
-
Susumu Nakata, Emma Phillips, and Violaine Goidts
- Published
- 2015
- Full Text
- View/download PDF
100. 15-Deoxy-Δ12,14-prostaglandin J2 induces death receptor 5 expression through mRNA stabilization independently of PPARγ and potentiates TRAIL-induced apoptosis
- Author
-
Miki Wakada, Susumu Nakata, Junji Kouhara, Takumi Shiraishi, Mano Horinaka, Toshiyuki Sakai, and Tatsushi Yoshida
- Subjects
Cancer Research ,Small interfering RNA ,RNA Stability ,Gene Expression ,Apoptosis ,Biology ,Jurkat cells ,Receptors, Tumor Necrosis Factor ,Amino Acid Chloromethyl Ketones ,Rosiglitazone ,TNF-Related Apoptosis-Inducing Ligand ,Jurkat Cells ,chemistry.chemical_compound ,Cell Line, Tumor ,Neoplasms ,Antineoplastic Combined Chemotherapy Protocols ,Humans ,RNA, Messenger ,RNA, Small Interfering ,Receptor ,Cyclopentenone prostaglandins ,Membrane Glycoproteins ,Pioglitazone ,Prostaglandin D2 ,Tumor Necrosis Factor-alpha ,Drug Synergism ,MRNA stabilization ,Molecular biology ,Enzyme Activation ,PPAR gamma ,Receptors, TNF-Related Apoptosis-Inducing Ligand ,Oncology ,chemistry ,Drug Resistance, Neoplasm ,Caspases ,Cancer cell ,Cancer research ,Thiazolidinediones ,Tumor necrosis factor alpha ,Apoptosis Regulatory Proteins - Abstract
15-Deoxy-Δ12,14-prostaglandin J2 (15d-PGJ2), the terminal derivative of the PGJ series, is emerging as a potent antineoplastic agent among cyclopentenone prostaglandins derivatives and also known as the endogenous ligand of peroxisome proliferator-activated receptor γ (PPARγ). On the other hand, death receptor 5 (DR5) is a specific receptor for tumor necrosis factor–related apoptosis-inducing ligand (TRAIL), which is one of the most promising candidates for new cancer therapeutics. Here, we report that 15d-PGJ2 induces DR5 expression at both mRNA and protein levels, resulting in the synergistic sensitization of TRAIL-induced apoptosis in human neoplastic cells, such as Jurkat human leukemia cells or PC3 human prostate cancer cells. 15d-PGJ2 significantly increased DR5 mRNA stability, whereas it did not activate DR5 promoter activity. Synthetic PPARγ agonists, such as pioglitazone or rosiglitazone, did not mimic the DR5-inducing effects of 15d-PGJ2, and a potent PPARγ inhibitor GW9662 failed to block DR5 induction by 15d-PGJ2, suggesting PPARγ-independent mechanisms. Cotreatment with 15d-PGJ2 and TRAIL enhanced the sequential activation of caspase-8, caspase-10, caspase-9, caspase-3, and Bid. DR5/Fc chimera protein, zVAD-fmk pancaspase inhibitor, and caspase-8 inhibitor efficiently blocked the activation of these apoptotic signal mediators and the induction of apoptotic cell death enhanced by cotreatment with 15d-PGJ2 and TRAIL. Moreover, a double-stranded small interfering RNA targeting DR5 gene, which suppressed DR5 up-regulation by 15d-PGJ2, significantly attenuated apoptosis induced by cotreatment with 15d-PGJ2 and TRAIL. These results suggest that 15d-PGJ2 is a potent sensitizer of TRAIL-mediated cancer therapeutics through DR5 up-regulation. [Mol Cancer Ther 2006;5(7):1827–35]
- Published
- 2006
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.