774 results on '"She, Chen"'
Search Results
52. Adaptation of codon usage to tRNA I34 modification controls translation kinetics and proteome landscape.
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Xueliang Lyu, Qian Yang, Lin Li, Yunkun Dang, Zhipeng Zhou, She Chen, and Yi Liu
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Genetics ,QH426-470 - Abstract
Codon usage bias is a universal feature of all genomes and plays an important role in regulating protein expression levels. Modification of adenosine to inosine at the tRNA anticodon wobble position (I34) by adenosine deaminases (ADATs) is observed in all eukaryotes and has been proposed to explain the correlation between codon usage and tRNA pool. However, how the tRNA pool is affected by I34 modification to influence codon usage-dependent gene expression is unclear. Using Neurospora crassa as a model system, by combining molecular, biochemical and bioinformatics analyses, we show that silencing of adat2 expression severely impaired the I34 modification levels for the ADAT-related tRNAs, resulting in major ADAT-related tRNA profile changes and reprogramming of translation elongation kinetics on ADAT-related codons. adat2 silencing also caused genome-wide codon usage-biased ribosome pausing on mRNAs and proteome landscape changes, leading to selective translational repression or induction of different mRNAs. The induced expression of CPC-1, the Neurospora ortholog of yeast GCN4p, mediates the transcriptional response after adat2 silencing and amino acid starvation. Together, our results demonstrate that the tRNA I34 modification by ADAT plays a major role in driving codon usage-biased translation to shape proteome landscape.
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- 2020
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53. Identification of ultra-high-frequency PD signals in gas-insulated switchgear based on moment features considering electromagnetic mode
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Feng Bin, Feng Wang, Qiuqin Sun, She Chen, Jingmin Fan, and Huisheng Ye
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feature extraction ,time-frequency analysis ,learning (artificial intelligence) ,pattern recognition ,support vector machines ,gas insulated switchgear ,particle swarm optimisation ,partial discharge measurement ,power engineering computing ,ultra-high-frequency partial discharge signals ,typical insulation defects ,time-frequency representation ,cutoff frequencies ,low-order moments ,feature selection ,selected moment features ,electromagnetic mode ,nearest neighbour ,real-time pd detection ,ultra-high-frequency pd signals ,gas-insulated switchgear ,pattern recognition techniques ,insulation condition ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Electricity ,QC501-721 - Abstract
The feature extraction and pattern recognition techniques are of great importance to assess the insulation condition of gas-insulated switchgear. In this work, the ultra-high-frequency partial discharge (PD) signals generated from four types of typical insulation defects are analysed using S-transform, and the greyscale image in time-frequency representation is divided into five regions according to the cutoff frequencies of TE(m)(1) modes. Then, the three low-order moments of every subregion are extracted and the feature selection is performed based on the J criterion. To confirm the effectiveness of selected moment features after considering the electromagnetic modes, the support vector machine, k-nearest neighbour and particle swarm-optimised extreme learning machine (ELM) are utilised to classify the type of PD, and they achieve the recognition accuracies of 92, 88.5 and 95%, respectively. In addition, the results show that the ELM offers good generalisation performance at the fastest learning and testing speeds, thus more suitable for a real-time PD detection.
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- 2020
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54. Caveolin-1 expression predicts efficacy of weekly nab-paclitaxel plus gemcitabine for metastatic breast cancer in the phase II clinical trial
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Yannan Zhao, Fangfang Lv, She Chen, Zhonghua Wang, Jian Zhang, Sheng Zhang, Jun Cao, Leiping Wang, Enying Cao, Biyun Wang, and Xichun Hu
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Metastatic breast cancer ,Chemotherapy ,Nab-paclitaxel ,Gemcitabine ,Caveolin-1 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Nanoparticle albumin-bound (nab)-paclitaxel has better efficacy, safety profiles, and no need to use prophylactic steroids compared with solvent-based paclitaxel. We performed a single arm, phase II study to evaluate the efficacy and safety of weekly nab-paclitaxel and gemcitabine combination in patients with metastatic breast cancer (MBC) and explored role of tumor/stromal Caveolin-1 (Cav-1) as a predictive biomarker for the efficacy. Methods Nab-paclitaxel (125 mg/m2) and gemcitabine (800 mg/m2) were administered on days 1, 8, and 15 in a 4-week cycle. The primary end point was objective response rate (ORR). Secondary end points were progression free survival (PFS), overall survival (OS) and safety profile. Exploratory study included immunohistochemical detection of Cav-1. Results Among 85 patients enrolled in the study, ORR was 52.4%. After a median follow-up of 17.2 months, median PFS was 7.9 months (95%CI, 6.6–9.2) and median OS was 25.8 months (95% CI, 20.4–31.1). The most common toxicities were neutropenia (75.0% for all grades; 45.2% for grade 3 or worse) and the most common non-hematologic toxicity was peripheral neuropathy (50.0% for all grades, 7.14% for grade 3 or worse). Higher tumor Cav-1 level and lower stromal Cav-1 level were significantly associated with longer PFS of nab-paclitaxel and gemcitabine. Conclusions The regimen had substantial antitumor activity and was well tolerated in MBC patients. Tumor/stromal Cav-1 level may be a good predictor for the efficacy of nab-paclitaxel and gemcitabine. Trial registration NCT01550848. Registered 12 March 2012.
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- 2018
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55. FXR Acts as a Metastasis Suppressor in Intrahepatic Cholangiocarcinoma by Inhibiting IL-6-Induced Epithelial-Mesenchymal Transition
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Bei Lv, Lijie Ma, Wenqing Tang, Peixin Huang, Biwei Yang, Lingxiao Wang, She Chen, Qiang Gao, Si Zhang, and Jinglin Xia
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Farnesoid X receptor ,Cholangiocarcinoma ,IL-6 ,EMT ,Physiology ,QP1-981 ,Biochemistry ,QD415-436 - Abstract
Background/Aims: Intrahepatic cholangiocarcinoma (ICC) is a complicated condition, with difficult diagnosis and poor prognosis. The expression and clinical significance of the farnesoid X receptor (FXR), an endogenous receptor of bile acids, in ICC is not well understood. Methods: Western blotting and immunochemical analyses were used to determine the levels of FXR in 4 cholangiocarcinoma cell lines, a human intrahepatic biliary epithelial cell line (HIBEpic) and 322 ICC specimens, respectively, while quantitative reverse transcription polymerase chain reaction was used to detect the mRNA levels of FXR in cholangiocarcinoma cell lines. We evaluated the prognostic value of FXR expression and its association with clinical parameters. We determined the biological significance of FXR in ICC cell lines by agonist-mediated activation and lentivirus-mediated silence. IL-6 expression was tested by an enzyme-linked immunosorbent assay and flow cytometry. In vitro, cell proliferation was examined by Cell Counting Kit-8, migration and invasion were examined by wound healing and transwell assays; in vivo, tumor migration and invasion were explored in NOD-SCID mice. Results: FXR was downregulated in ICC cell lines and clinical ICC specimens. Loss of FXR was markedly correlated with aggressive tumor phenotypes and poor prognosis in patients with ICC. Moreover, FXR expression also had significant prognostic value in carbohydrate antigen 19-9 (CA19-9) negative patients. The expression of FXR was negatively correlated with IL-6 levels in clinical ICC tissues. FXR inhibited the proliferation, migration, invasion and epithelial mesenchymal transition (EMT) of ICC cells via suppression of IL-6 in vitro. Obeticholic acid, an agonist of FXR, inhibited IL-6 production, tumor growth and lung metastasis of ICC in vivo. Conclusions: FXR could be a promising ICC prognostic biomarker, especially in CA19-9 negative patients with ICC. FXR inhibits the tumor growth and metastasis of ICC via IL-6 suppression.
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- 2018
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56. Protein Expression Landscape of Mouse Embryos during Pre-implantation Development
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Yawei Gao, Xiaoyu Liu, Bin Tang, Chong Li, Zhaohui Kou, Lin Li, Wenqiang Liu, You Wu, Xiaochen Kou, Jingyi Li, Yanhong Zhao, Jiqing Yin, Hong Wang, She Chen, Lujian Liao, and Shaorong Gao
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proteome ,mouse ,pre-implantation embryo ,undefined peptides ,Biology (General) ,QH301-705.5 - Abstract
Pre-implantation embryo development is an intricate and precisely regulated process orchestrated by maternally inherited proteins and newly synthesized proteins following zygotic genome activation. Although genomic and transcriptomic studies have enriched our understanding of the genetic programs underlying this process, the protein expression landscape remains unexplored. Using quantitative mass spectrometry, we identified nearly 5,000 proteins from 8,000 mouse embryos of each stage (zygote, 2-cell, 4-cell, 8-cell, morula, and blastocyst). We found that protein expression in zygotes, morulas, and blastocysts is distinct from 2- to 8-cell embryos. Analysis of protein phosphorylation identified critical kinases and signal transduction pathways. We highlight key factors and their important roles in embryo development. Combined analysis of transcriptomic and proteomic data reveals coordinated control of RNA degradation, transcription, and translation and identifies previously undefined exon-junction-derived peptides. Our study provides an invaluable resource for further mechanistic studies and suggests core factors regulating pre-implantation embryo development.
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- 2017
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57. Mrg15 stimulates Ash1 H3K36 methyltransferase activity and facilitates Ash1 Trithorax group protein function in Drosophila
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Chang Huang, Fu Yang, Zhuqiang Zhang, Jing Zhang, Gaihong Cai, Lin Li, Yong Zheng, She Chen, Rongwen Xi, and Bing Zhu
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Science - Abstract
Ash1 is an H3K36 methyltransferase, Trithorax group protein and is critical in antagonizing Polycomb silencing. Here, the authors purify the Drosophila Ash1 complex and identify Mrg15 and Nurf55 as subunits, finding that Mrg15 is recruited by Ash1 and reinforces Ash1 activity.
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- 2017
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58. Investigation on Reignition Probability of Switching Overvoltage Caused by Vacuum Circuit Breaker in Offshore Wind Farms
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Qiuqin Sun, Zhi Zheng, Lei Huang, Feng Wang, Lipeng Zhong, and She Chen
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Energy Engineering and Power Technology ,Electrical and Electronic Engineering - Published
- 2022
59. Identification of prognostic miRNA-mRNA regulatory network in the progression of HCV-associated cirrhosis to hepatocellular carcinoma
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Liping, Han, Xuemei, Jia, Weinire, Abuduwaili, Dongping, Li, He, Chen, Qiuyu, Jiang, She, Chen, Si, Zhang, Rong, Xia, and Ruyi, Xue
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Cancer Research ,Oncology ,Radiology, Nuclear Medicine and imaging - Abstract
Long-term hepatitis C virus (HCV) infection is strongly associated with hepatocellular carcinoma (HCC), yet the mechanisms of the progression process remain unclear. The research is aiming to establish a crucial prognostic model that indicates the risk of HCV-associated cirrhosis evolving into HCC.Differentially expressed microRNAs (DE-miRNAs) and differentially expressed genes (DEGs) between HCV-associated cirrhosis and HCC were screened from the GSE40744 and GSE6764 datasets, respectively. Downstream target genes of DE-miRNAs were predicted by the miRNet tool and then overlapped with the DEGs to select intersection genes. The GSE15654 was downloaded to establish a prognostic model. Expression levels of risk genes and their corresponding miRNAs were measured in liver tissues of clinical patients. HCC cell lines with UHRF1 knockdown or overexpression were assayed for cell proliferation and migration.Thirty-nine DE-miRNAs and 796 DEGs are identified between HCV-associated cirrhosis and HCC. Main intersection genes and their corresponding miRNAs constitute a miRNA-mRNA regulatory network. PABPC1 (Polyadenylate-binding protein 1), SLC2A9 (solute carrier gene family 2, member 9), and UHRF1 (ubiquitin-like with PHD and ring finger domains 1) form a prognostic model indicating the risk of HCC development among HCV-associated cirrhosis. The genetic mutations of PABPC1, SLC2A9, and UHRF1 in HCC patients are 9%, 0.8%, and 0.6%, respectively. Compared to that in HCV-associated cirrhosis, the expression levels of PABPC1 and UHRF1 are higher while the expression level of SLC2A9 is lower in clinical HCV-associated HCC samples. UHRF1 enhances the proliferation and migration ability of HCC cells.PABPC1, SLC2A9, and UHRF1 and their corresponding miRNAs are involved in the evolution process of HCV-associated cirrhosis into malignant HCC. UHRF1 serves as an oncogene that promotes the proliferation and migration of HCC cells.
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- 2022
60. SALT OVERLY SENSITIVE 1 is inhibited by clade D Protein phosphatase 2C D6 and D7 in Arabidopsis thaliana
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Haiqi Fu, Xiang Yu, Yuanyuan Jiang, Yuhan Wang, Yongqing Yang, She Chen, Qijun Chen, and Yan Guo
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Cell Biology ,Plant Science - Abstract
The salt overly sensitive (SOS) pathway is essential for maintaining sodium ion homeostasis in plants. This conserved pathway is activated by a calcium signaling-dependent phosphorylation cascade. However, the identity of the phosphatases and their regulatory mechanisms that would deactivate the SOS pathway remain unclear. In this study, we demonstrate that PP2C.D6 and PP2C.D7, which belong to clade D of the protein phosphatase 2C (PP2C) subfamily in Arabidopsis thaliana, directly interact with SOS1 and inhibit its Na+/H+ antiporter activity under non-salt-stress conditions. Upon salt stress, SOS3-LIKE CALCIUM-BINDING PROTEIN8 (SCaBP8), a member of the SOS pathway, interacts with the PP2Cs and suppresses their phosphatase activity; simultaneously, SCaBP8 regulates the subcellular localization of PP2C.D6 by releasing it from the plasma membrane. Thus, we identified two negative regulators of the SOS pathway that repress SOS1 activity under nonstress conditions. These processes set the stage for the activation of SOS1 by the kinase SOS2 to achieve plant salt tolerance. Our results suggest that reversible phosphorylation/dephosphorylation is crucial for the regulation of the SOS pathway, and that calcium sensors play dual roles in activating/deactivating SOS2 and PP2C phosphatases under salt stress.
- Published
- 2022
61. Facile fabrication of spherical flower-like Mg(OH)2 and its fast and efficient removal for heavy metal ions
- Author
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Xiao-yi SHEN, Yan-xiang HUANG, Hong-mei SHAO, Yuan WANG, Qing HAN, Jian-she CHEN, Bin-chuan LI, and Yu-chun ZHAI
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Materials Chemistry ,Metals and Alloys ,Geotechnical Engineering and Engineering Geology ,Condensed Matter Physics - Published
- 2022
62. Ube2D3 and Ube2N are essential for RIG-I-mediated MAVS aggregation in antiviral innate immunity
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Yuheng Shi, Bofeng Yuan, Wenting Zhu, Rui Zhang, Lin Li, Xiaojing Hao, She Chen, and Fajian Hou
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Science - Abstract
The RIG-I-MAVS signalling pathway plays an important role in sensing virus infection. Here the authors identify the ubiquitin-conjugating enzymes Ube2D3 and Ube2N as essential for RIG-I activation and define their roles in mediating MAVS aggregation.
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- 2017
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63. Distribution, karyomorphology, and morphology of Aspidistra subrotata (Asparagaceae) at different ploidy levels in limestone areas of Asia
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Jian-she Chen, Qi Gao, Hao Zhou, Yu-song Huang, Mikinori Ogisu, and Ming Cao
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Genetics ,QH426-470 - Abstract
Aspidistra subrotata Y. Wan & C.C. Huang, 1987 is considered for the first time as a widespread polyploidy complex in the genus Aspidistra Ker Gawler, 1823 from limestone areas of Asia. The chromosome number of the tetraploid is 2n = 76 and the karyotype is formulated as 2n = 44 m + 8 sm + 24 st, while the chromosome number of the diploid is 2n = 38 and the karyotype formula 2n = 22 m + 4 sm + 12 st. In our studies, diploids occupy broader geographical and environmental niche spaces than tetraploids. Although the leaf-shape of A. subrotata varies quantitatively between and within diploid and/or tetraploid population(s), no obvious discontinuity in the width of leaf has been observed. The tetraploid plants may be distinguished from the diploid plants by their rigid petioles as well as thick deep green lamina. A. subrotata is therefore an interesting material to explore the formation and the evolutionary dynamics of a natural polyploid complex from limestone areas of the tropical regions.
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- 2017
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64. Numerical Simulation of the Positive Streamer Propagation in N₂ Under Nanosecond Pulse Voltage
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Lipeng Zhong, Yongchao Deng, Zhiqiang Chen, Feng Wang, She Chen, Qiuqin Sun, Wei Jia, and Fan Guo
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Nuclear and High Energy Physics ,Condensed Matter Physics - Published
- 2022
65. A regulatory circuit comprising the CBP and SIRT7 regulates FAM134B-mediated ER-phagy
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Xinyi Wang, Xiao Jiang, Boran Li, Jiahua Zheng, Jiansheng Guo, Lei Gao, Mengjie Du, Xialian Weng, Lin Li, She Chen, Jingzi Zhang, Lei Fang, Ting Liu, Liang Wang, Wei Liu, Dante Neculai, and Qiming Sun
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Cell Biology - Abstract
Macroautophagy (autophagy) utilizes a serial of receptors to specifically recognize and degrade autophagy cargoes, including damaged organelles, to maintain cellular homeostasis. Upstream signals spatiotemporally regulate the biological functions of selective autophagy receptors through protein post-translational modifications (PTM) such as phosphorylation. However, it is unclear how acetylation directly controls autophagy receptors in selective autophagy. Here, we report that an ER-phagy receptor FAM134B is acetylated by CBP acetyltransferase, eliciting intense ER-phagy. Furthermore, FAM134B acetylation promoted CAMKII-mediated phosphorylation to sustain a mode of milder ER-phagy. Conversely, SIRT7 deacetylated FAM134B to temper its activities in ER-phagy to avoid excessive ER degradation. Together, this work provides further mechanistic insights into how ER-phagy receptor perceives environmental signals for fine-tuning of ER homeostasis and demonstrates how nucleus-derived factors are programmed to control ER stress by modulating ER-phagy.
- Published
- 2023
66. The Arabidopsis NuA4 histone acetyltransferase complex is required for chlorophyll biosynthesis and photosynthesis
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Jin‐Xing Zhou, Xiao‐Min Su, Si‐Yao Zheng, Chan‐Juan Wu, Yin‐Na Su, Zhaodi Jiang, Lin Li, She Chen, and Xin‐Jian He
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Chlorophyll ,Histones ,Saccharomyces cerevisiae Proteins ,Arabidopsis ,Acetylation ,Plant Science ,Photosynthesis ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,Histone Acetyltransferases - Abstract
Although two Enhancer of Polycomb-like proteins, EPL1A and EPL1B (EPL1A/B), are known to be conserved and characteristic subunits of the NuA4-type histone acetyltransferase complex in Arabidopsis thaliana, the biological function of EPL1A/B and the mechanism by which EPL1A/B function in the complex remain unknown. Here, we report that EPL1A/B are required for the histone acetyltransferase activity of the NuA4 complex on the nucleosomal histone H4 in vitro and for the enrichment of histone H4K5 acetylation at thousands of protein-coding genes in vivo. Our results suggest that EPL1A/B are required for linking the NuA4 catalytic subunits HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1(HAM1) and HAM2 with accessory subunits in the NuA4 complex. EPL1A/B function redundantly in regulating plant development especially in chlorophyll biosynthesis and de-etiolation. The EPL1A/B-dependent transcription and H4K5Ac are enriched at genes involved in chlorophyll biosynthesis and photosynthesis. We also find that EAF6, another characteristic subunit of the NuA4 complex, contributes to de-etiolation. These results suggest that the Arabidopsis NuA4 complex components function as a whole to mediate histone acetylation and transcriptional activation specifically at light-responsive genes and are critical for photomorphogenesis.
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- 2022
67. Crystal structure and catalytic mechanism of the MbnBC holoenzyme required for methanobactin biosynthesis
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Chao Dou, Zhaolin Long, Shoujie Li, Dan Zhou, Ying Jin, Li Zhang, Xuan Zhang, Yanhui Zheng, Lin Li, Xiaofeng Zhu, Zheng Liu, Siyu He, Weizhu Yan, Lulu Yang, Jie Xiong, Xianghui Fu, Shiqian Qi, Haiyan Ren, She Chen, Lunzhi Dai, Binju Wang, and Wei Cheng
- Subjects
Iron ,Imidazoles ,Cell Biology ,Holoenzymes ,Oligopeptides ,Molecular Biology ,Catalysis ,Copper - Abstract
Methanobactins (Mbns) are a family of copper-binding peptides involved in copper uptake by methanotrophs, and are potential therapeutic agents for treating diseases characterized by disordered copper accumulation. Mbns are produced via modification of MbnA precursor peptides at cysteine residues catalyzed by the core biosynthetic machinery containing MbnB, an iron-dependent enzyme, and MbnC. However, mechanistic details underlying the catalysis of the MbnBC holoenzyme remain unclear. Here, we present crystal structures of MbnABC complexes from two distinct species, revealing that the leader peptide of the substrate MbnA binds MbnC for recruitment of the MbnBC holoenzyme, while the core peptide of MbnA resides in the catalytic cavity created by the MbnB–MbnC interaction which harbors a unique tri-iron cluster. Ligation of the substrate sulfhydryl group to the tri-iron center achieves a dioxygen-dependent reaction for oxazolone-thioamide installation. Structural analysis of the MbnABC complexes together with functional investigation of MbnB variants identified a conserved catalytic aspartate residue as a general base required for MbnBC-mediated MbnA modification. Together, our study reveals the similar architecture and function of MbnBC complexes from different species, demonstrating an evolutionarily conserved catalytic mechanism of the MbnBC holoenzymes.
- Published
- 2022
68. The Arabidopsis acetylated histone-binding protein BRAT1 forms a complex with BRP1 and prevents transcriptional silencing
- Author
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Cui-Jun Zhang, Xiao-Mei Hou, Lian-Mei Tan, Chang-Rong Shao, Huan-Wei Huang, Yong-Qiang Li, Lin Li, Tao Cai, She Chen, and Xin-Jian He
- Subjects
Science - Abstract
Transposons and repetitive sequences are typically subject to transcription silencing. Here, Zhang et al. find that the bromodomain-containing protein BRAT1 forms a complex with BRP1, recognizes histone acetylation and acts to prevent transcriptional silencing in Arabidopsis.
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- 2016
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69. A new fault-tolerant single-bit comparator in QCA technology using a novel X-NOR gate
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Yin, Yuexi, primary, Liu, Jiaxuan, additional, and She, Chen, additional
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- 2022
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70. Simulation Study on Influencing Factors of Electric and Mechanical Energy Hybrid Harvester for Power Transmission Lines
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Liu Cao, Yulong Liu, Fei Sheng, Zufen Wu, Dongyang Hu, Xiaolong Huang, and She Chen
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- 2023
71. Effect of Profiled Surface on Streamer Propagation and the Corner Effect
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Feng Wang, Lanbo Wang, She Chen, Qiuqin Sun, and Lipeng Zhong
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Electrical and Electronic Engineering - Published
- 2021
72. Spontaneous necroptosis and autoinflammation are blocked by an inhibitory phosphorylation on MLKL during neonatal development
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Yu Yang, Yu Zhang, She Chen, Ning Nan, Na Yang, Hong Hu, Zhaoqian Shu, Dandan Yu, Huayi Wang, Feiyang Yuan, Xiaoyan Liu, Xinxin Zhu, and Liming Sun
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Necroptosis ,Phosphorylation ,Cell Biology ,Biology ,Inhibitory postsynaptic potential ,Molecular Biology ,Developmental biology ,Cell biology - Published
- 2021
73. MLL1 is regulated by KSHV LANA and is important for virus latency
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Bing Liu, Ángel L Álvarez, Qiming Sun, J. Pedro Simas, Min Tan, Franceline Juillard, Rute Chitas, Han Xue, Agnieszka Szymula, Colin E. McVey, Shijun Li, Tânia F Custódio, Kenneth M. Kaye, Jing Huang, She Chen, and Veritati - Repositório Institucional da Universidade Católica Portuguesa
- Subjects
Gene Expression Regulation, Viral ,AcademicSubjects/SCI00010 ,Protein Conformation ,viruses ,Biology ,Crystallography, X-Ray ,Virus ,Antigen ,Cell Line, Tumor ,Virus latency ,Genetics ,medicine ,WDR5 ,Humans ,Epigenetics ,Molecular Biology ,Antigens, Viral ,Sarcoma, Kaposi ,Intracellular Signaling Peptides and Proteins ,virus diseases ,Nuclear Proteins ,MLL1 complex ,Histone-Lysine N-Methyltransferase ,biochemical phenomena, metabolism, and nutrition ,medicine.disease ,Cell biology ,Virus Latency ,Histone methyltransferase ,Gene Knockdown Techniques ,DNA, Viral ,Herpesvirus 8, Human ,Host-Pathogen Interactions ,H3K4me3 ,Myeloid-Lymphoid Leukemia Protein ,Protein Binding - Abstract
Mixed lineage leukemia 1 (MLL1) is a histone methyltransferase. Kaposi's sarcoma-associated herpesvirus (KSHV) is a leading cause of malignancy in AIDS. KSHV latently infects tumor cells and its genome is decorated with epigenetic marks. Here, we show that KSHV latency-associated nuclear antigen (LANA) recruits MLL1 to viral DNA where it establishes H3K4me3 modifications at the extensive KSHV terminal repeat elements during primary infection. LANA interacts with MLL1 complex members, including WDR5, integrates into the MLL1 complex, and regulates MLL1 activity. We describe the 1.5-Å crystal structure of N-terminal LANA peptide complexed with MLL1 complex member WDR5, which reveals a potential regulatory mechanism. Disruption of MLL1 expression rendered KSHV latency establishment highly deficient. This deficiency was rescued by MLL1 but not by catalytically inactive MLL1. Therefore, MLL1 is LANA regulable and exerts a central role in virus infection. These results suggest broad potential for MLL1 regulation, including by non-host factors.
- Published
- 2021
74. A mitochondrial SCF-FBXL4 ubiquitin E3 ligase complex restrains excessive mitophagy to prevent mitochondrial disease
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Yu Cao, Jing Zheng, Huayun Wan, Yuqiu Sun, Song Fu, Shanshan Liu, Baiyu He, Gaihong Cai, Yang Cao, Huanwei Huang, Qi Li, Yan Ma, She Chen, Fengchao Wang, and Hui Jiang
- Abstract
SUMMARYMitophagy is a fundamental quality control mechanism of mitochondria. Its regulatory mechanisms and pathological implications remain poorly understood. Here via a mitochondria-targeted screen, we found that knockout (KO) of FBXL4, a mitochondrial disease gene, hyperactivates mitophagy at basal conditions. Subsequent counter screen revealed that FBXL4-KO hyperactivates mitophagy via two mitophagy receptors BNIP3 and NIX. We determined that FBXL4 functions as an integral outer-membrane protein that forms an SCF-FBXL4 ubiquitin E3 ligase complex. SCF-FBXL4 ubiquitinates BNIP3 and NIX to target them for degradation. Pathogenic FBXL4 mutations disrupt SCF-FBXL4 assembly and impair substrate degradation.Fbxl4−/−mice exhibit elevated BNIP3 and NIX proteins, hyperactive mitophagy, and perinatal lethality. Importantly, knockout of eitherBnip3orNixrescues metabolic derangements and viability of theFbxl4−/−mice. Together, beyond identifying SCF-FBXL4 as a novel mitochondrial ubiquitin E3 ligase restraining basal mitophagy, our results reveal hyperactivated mitophagy as a cause of mitochondrial disease and suggest therapeutic strategies.
- Published
- 2022
75. The plant-specific transcription factors CBP60g and SARD1 are targeted by a Verticillium secretory protein VdSCP41 to modulate immunity
- Author
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Jun Qin, Kailun Wang, Lifan Sun, Haiying Xing, Sheng Wang, Lin Li, She Chen, Hui-Shan Guo, and Jie Zhang
- Subjects
Verticillium ,effector ,plant immunity ,calmodulin-binding protein ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
The vascular pathogen Verticillium dahliae infects the roots of plants to cause Verticillium wilt. The molecular mechanisms underlying V. dahliae virulence and host resistance remain elusive. Here, we demonstrate that a secretory protein, VdSCP41, functions as an intracellular effector that promotes V. dahliae virulence. The Arabidopsis master immune regulators CBP60g and SARD1 and cotton GhCBP60b are targeted by VdSCP41. VdSCP41 binds the C-terminal portion of CBP60g to inhibit its transcription factor activity. Further analyses reveal a transcription activation domain within CBP60g that is required for VdSCP41 targeting. Mutations in both CBP60g and SARD1 compromise Arabidopsis resistance against V. dahliae and partially impair VdSCP41-mediated virulence. Moreover, virus-induced silencing of GhCBP60b compromises cotton resistance to V. dahliae. This work uncovers a virulence strategy in which the V. dahliae secretory protein VdSCP41 directly targets plant transcription factors to inhibit immunity, and reveals CBP60g, SARD1 and GhCBP60b as crucial components governing V. dahliae resistance.
- Published
- 2018
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76. X-Ray Radiation as a Possible Approach for Realizing Surface Charge Decay on Post Insulators inside SF6
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Fangwei Liang, Weijian Zhuang, Zuodong Liang, Bo Zhang, Chuanyang Li, Jinliang He, Feng Wang, She Chen, Lingling Tang, and Yulin Zeng
- Published
- 2022
77. Discovery of a New Class of Uracil Derivatives as Potential Mixed Lineage Kinase Domain-like Protein (MLKL) Inhibitors
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Bo Cui, Bo Yan, Kang Wang, Lin Li, She Chen, and Zhiyuan Zhang
- Subjects
Receptor-Interacting Protein Serine-Threonine Kinases ,Xanthines ,Drug Discovery ,Molecular Medicine ,Apoptosis ,Uracil ,Glutathione ,Protein Kinases - Abstract
Necroptosis is a form of programmed cell death. Mixed lineage kinase domain-like protein (MLKL) is the necroptosis executor, and it is involved in various diseases such as tissue damage and neurodegeneration-related diseases. Here, we report the development of novel MLKL inhibitors with a uracil nucleus through scaffold morphing from our previously reported xanthine MLKL inhibitor TC13172. After a rational structure-activity relationship study, we obtained the highly potent compounds
- Published
- 2022
78. Temporal Proteomic and Phosphoproteomic Analysis of EV-A71-Infected Human Cells
- Author
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Yue Zhao, Lin Li, Xinhui Wang, Sudan He, Weifeng Shi, and She Chen
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Proteomics ,Proto-Oncogene Proteins c-myc ,Proteome ,Enterovirus Infections ,Humans ,General Chemistry ,Phosphoproteins ,Biochemistry ,Antigens, Viral ,Enterovirus ,Enterovirus A, Human ,Polyproteins - Abstract
Human enterovirus A71 (EV-A71), a member of the Picornaviridae family, is one of the main etiological viruses that lead to hand, foot, and mouth disease (HFMD). We utilized a multiplex tandem mass tag-based quantitative proteomic technique to monitor the alternation of the whole cell proteome and phosphoproteome of human rhabdomyosarcoma cells over the course of EV-A71 infection. We successfully quantified more than 7000 host proteins and 17,000 phosphosites, of which 80 proteins and nearly 1700 phosphosites were significantly regulated upon viral infection. We found that Myc proto-oncogene protein level decreased significantly, benefiting EV-A71 replication. Multiple signaling pathways were regulated in phosphorylation events that converge for protein translation, cell cycle control, and cell survival. Numerous host factors targeted by virus proteins are phosphoproteins. These factors are involved in host translational initiation, unfolded protein response, endoplasmic reticulum stress, and stress granule formation, and their phosphorylation may play key roles in the virus life cycle. Notably, we identified three conserved phosphorylation sites on viral polyproteins that have not been previously reported. Our study provides valuable resources for a systematic understanding of the interaction between the host cells and the EV-A71 at the protein and the post-translational level.
- Published
- 2022
79. Elucidating the dissociative and associative mechanisms on the surface-anchored Fe3 cluster under the effect of external electric field
- Author
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Qihang Li, She Chen, Yulei Wang, Kelin Li, Mengbo Li, Linlin Liu, and Feng Wang
- Subjects
General Physics and Astronomy ,Surfaces and Interfaces ,General Chemistry ,Condensed Matter Physics ,Surfaces, Coatings and Films - Published
- 2023
80. Author Correction: Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes
- Author
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Jing Guo, Guang Cai, Yong-Qiang Li, Yi-Xuan Zhang, Yin-Na Su, Dan-Yang Yuan, Zhao-Chen Zhang, Zhen-Zhen Liu, Xue-Wei Cai, Lin Li, She Chen, and Xin-Jian He
- Subjects
Plant Science - Published
- 2023
81. COMPASS functions as a module of the INO80 chromatin remodeling complex to mediate histone H3K4 methylation in Arabidopsis
- Author
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Yin-Na Su, She Chen, Ji-Yun Shang, Xin-Jian He, Chao Feng, Lin Li, Xue-Wei Cai, and Yu-Jia Lu
- Subjects
biology ,ATPase ,Arabidopsis ,MADS Domain Proteins ,Flowers ,Cell Biology ,Plant Science ,Chromatin Assembly and Disassembly ,biology.organism_classification ,Methylation ,Chromatin remodeling ,Chromatin ,Cell biology ,Histones ,Histone ,Transcription (biology) ,biology.protein ,Arabidopsis thaliana ,Ino80 complex ,Research Articles - Abstract
In the INO80 chromatin remodeling complex, all of the accessory subunits are assembled on the following three domains of INO80: N-terminal domain (NTD), HSA domain, and ATPase domain. Although the ATPase and HSA domains and their interacting accessory subunits are known to be responsible for chromatin remodeling, it is largely unknown how the accessory subunits that interact with the INO80 NTD regulate chromatin status. Here, we identify both conserved and nonconserved accessory subunits that interact with the three domains in the INO80 complex in Arabidopsis thaliana. While the accessory subunits that interact with all the three INO80 domains can mediate transcriptional repression, the INO80 NTD and the accessory subunits interact with it can contribute to transcriptional activation even when the ATPase domain is absent, suggesting that INO80 has an ATPase-independent role. A subclass of the COMPASS histone H3K4 methyltransferase complexes interact with the INO80 NTD in the INO80 complex and function together with the other accessory subunits that interact with the INO80 NTD, thereby facilitating H3K4 trimethylation and transcriptional activation. This study suggests that the opposite effects of the INO80 complex on transcription are required for the balance between vegetative growth and flowering under diverse environmental conditions.
- Published
- 2021
82. Numerical Simulation of the Discharge Dynamics of C₄F₇N-N₂ and the Influence of Buffer Gas
- Author
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Feng Wang, Chijie Zhuang, Lipeng Zhong, Lanbo Wang, She Chen, and Qiuqin Sun
- Subjects
Nuclear and High Energy Physics ,Electron density ,Materials science ,Computer simulation ,Ionization ,Buffer gas ,Head (vessel) ,Radius ,Mechanics ,Condensed Matter Physics ,Streamer discharge ,Space charge - Abstract
Due to the greenhouse effect of SF6, the search for new environmentally friendly substitute gases has become an urgent task for the electrical industry. In this article, we have employed a 2-D fluid model to study the characteristic of streamer discharges in the C4F7N-N2 mixture. The discharge process and insulation performance of the C4F7N-N2 mixture with different C4F7N content are compared under the same conditions. In a5.07% C4F7N-N2 mixture, the streamer expands continuously and reaches the top boundary quickly. In 7% and 13.1% C4F7N-N2 mixture, the streamer is gradually stagnated in the simulation domain. The streamer radius shows a decreasing trend, and a low electron density area appears behind the streamer head as the streamer moves forward. The streamer discharge simulation in 50% SF6–50% N2 is also performed to compare its insulation performance to the C4F7N-N2 mixture. The results show that the discharge is suppressed more heavily in 13.1% C4F7N-N2 than in 50% SF6–50% N2. The influence of buffer gas is studied by comparing the discharge process in C4F7N-N2 and C4F7N-CO2 with 13.1% C4F7N content. It is found that the discharge is more easily to a breakdown in C4F7N-CO2 than that in C4F7N-N2 in our simulation configuration. The simulation provides a way to optimizing the buffer gas ratio of new environmentally friendly gases from a microscopic perspective.
- Published
- 2021
83. Influence of extended grading capacitor for suppressing secondary arc on the transient recovery voltage of multi‐break circuit breaker
- Author
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Lipeng Zhong, Rong Jiang, She Chen, Zhibin Xiao, and Qiuqin Sun
- Subjects
TK1001-1841 ,Materials science ,Transient recovery voltage ,Distribution or transmission of electric power ,business.industry ,Electrical engineering ,Energy Engineering and Power Technology ,TK3001-3521 ,law.invention ,Arc (geometry) ,Capacitor ,Production of electric energy or power. Powerplants. Central stations ,Control and Systems Engineering ,law ,Electrical and Electronic Engineering ,business ,Grading (tumors) ,Circuit breaker - Abstract
The extended grading capacitor (EGC) is a cost‐effective technique to suppress secondary arc. However, whether the use of EGC would weaken the interrupting capability of circuit breakers (CB) or not is still undetermined. In this work, an equivalent circuit model for ultra‐high voltage transmission line was established. The expressions of transient recovery voltage (TRV) across the contact gap of CB are derived, and hence the rate of rise of recovery voltage (RRRV). Then, a series of simulations have been performed, including the long‐line fault, the short‐line fault (SLF) and the terminal fault. It is found that the RRRV had approximately linear downward trend with the increase of the capacitance of EGC under long‐line fault but had approximately index downward trend under SLF. The SLF poses the strictest requirements to the CB. In addition to suppressing secondary arc current, the use of EGC would mitigate the interrupting severity and enhancing the interrupting performance of CB.
- Published
- 2021
84. Loss of polarity protein Par3 is mediated by transcription factor Sp1 in breast cancer
- Author
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Li Zhang, Biyun Wang, Zhonghua Tao, Dingjin Yao, She Chen, Xichun Hu, Si Zhang, Yi Li, and Yannan Zhao
- Subjects
0301 basic medicine ,Sp1 Transcription Factor ,Biophysics ,Breast Neoplasms ,Cell Cycle Proteins ,Biology ,medicine.disease_cause ,Biochemistry ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Cell Movement ,Cell Line, Tumor ,medicine ,Humans ,Promoter Regions, Genetic ,skin and connective tissue diseases ,Molecular Biology ,Adaptor Proteins, Signal Transducing ,Gene knockdown ,Sp1 transcription factor ,Polarity (international relations) ,Cell Polarity ,Cancer ,Promoter ,Cell Biology ,medicine.disease ,Survival Rate ,030104 developmental biology ,030220 oncology & carcinogenesis ,Cancer research ,Female ,Neoplasm Grading ,Neoplasm Recurrence, Local ,Carcinogenesis - Abstract
Loss of polarity protein Par3 promotes breast cancer tumorigenesis and metastasis. The underlying molecular mechanisms of Par3 down-regulation and related prognostic significance in breast cancer remain unclear. Here, we discovered that Par3 down-regulation was associated with shorter relapse-free survival in Luminal A subtype of breast cancer. Par3 knockdown promoted breast cancer cells migration and invasion. Importantly, we identified that transcription factor Sp1 bound to PARD3 promoter region and induced Par3 expression. Breast cancer patients with low Sp1 showed significantly worse RFS and low expression level of Par3. Par3 over-expression partially reversed Sp1 knockdown induced migration and invasion. Together, decreased Sp1 level mediates Par3 down-regulation, which correlated with poor prognosis of ER + breast cancer patients, via reduced binding with PARD3 promoter.
- Published
- 2021
85. Effect of Surface Charges on Flashover Voltage - An Examination Considering Charge Decay Rates
- Author
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Lipeng Zhong, Feng Wang, Bencheng Zhang, Peng Xiao, Qiuqin Sun, Fangwei Liang, and She Chen
- Subjects
010302 applied physics ,Materials science ,Charge (physics) ,Dissipation ,Conductivity ,01 natural sciences ,Molecular physics ,Surface conductivity ,Electric field ,0103 physical sciences ,Electric potential ,Surface charge ,Electrical and Electronic Engineering ,Voltage - Abstract
The effect of the position and amount of surface charges on cylindrical polytetrafluoroethylene (PTFE) insulators with different surface conductivities is studied. The surface potential decay property with time is investigated subjected to different electric fields. A simulation model for charge transport is established. The results show that the surface potential decays exponentially after surface treatment. The decay rate of surface charges increases with the surface conductivity. At $t = 180$ seconds, the decay rates of surface potentials for different surface conductivity are 2%, 42%, 60% and 84%, respectively. For samples with the same surface conductivity, the decay rates of surface potentials under different initial values are about 57%, and the decay rates at different accumulated locations are about 62%. It is demonstrated that the surface charge decay rate has little difference when initial charges with different amount and positions are introduced. However, the dissipation of surface charges can be promoted by applying a voltage of the same polarity. When the surface conductivity is increased to 5.1 × 10−16 S, the potential decay rate under the applied voltage increases to 76%. Furthermore, the flashover voltage decreases with the increase of surface conductivity. As a result, the effect of homopolar surface charges on the flashover voltage is reduced.
- Published
- 2021
86. FACT interacts with Set3 HDAC and fine-tunes GAL1 transcription in response to environmental stimulation
- Author
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She Chen, Shijia Gu, Jiazhi Hu, Shaofeng Liu, Yang Lei, Qing Li, Jianxun Feng, He Leng, and Yuantao Tang
- Subjects
Transcriptional Activation ,RNA, Untranslated ,Saccharomyces cerevisiae Proteins ,Transcription, Genetic ,AcademicSubjects/SCI00010 ,NcRNA transcription ,Saccharomyces cerevisiae ,Histone Deacetylases ,03 medical and health sciences ,Galactokinase ,0302 clinical medicine ,Transcription (biology) ,Gene Expression Regulation, Fungal ,Gene expression ,Genetics ,Nucleosome ,030304 developmental biology ,Regulation of gene expression ,0303 health sciences ,biology ,Gene regulation, Chromatin and Epigenetics ,Chromatin ,Cell biology ,Histone ,Histone deacetylase complex ,biology.protein ,Trans-Activators ,030217 neurology & neurosurgery - Abstract
The histone chaperone facilitates chromatin transactions (FACT) functions in various DNA transactions. How FACT performs these multiple functions remains largely unknown. Here, we found, for the first time, that the N-terminal domain of its Spt16 subunit interacts with the Set3 histone deacetylase complex (Set3C) and that FACT and Set3C function in the same pathway to regulate gene expression in some settings. We observed that Spt16-G132D mutant proteins show defects in binding to Set3C but not other reported FACT interactors. At the permissive temperature, induction of the GAL1 and GAL10 genes is reduced in both spt16-G132D and set3Δ cells, whereas transient upregulation of GAL10 noncoding RNA (ncRNA), which is transcribed from the 3′ end of the GAL10 gene, is elevated. Mutations that inhibit GAL10 ncRNA transcription reverse the GAL1 and GAL10 induction defects in spt16-G132D and set3Δ mutant cells. Mechanistically, set3Δ and FACT (spt16-G132D) mutants show reduced histone acetylation and increased nucleosome occupancy at the GAL1 promoter under inducing conditions and inhibition of GAL10 ncRNA transcription also partially reverses these chromatin changes. These results indicate that FACT interacts with Set3C, which in turn prevents uncontrolled GAL10 ncRNA expression and fine-tunes the expression of GAL genes upon a change in carbon source.
- Published
- 2021
87. Loss of polarity protein Par3, via transcription factor Snail, promotes bladder cancer metastasis
- Author
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Shenyi Wang, Si Zhang, Jinming Cai, Li Zhang, Bing Shen, She Chen, Xu Yingying, and Mingwei Dong
- Subjects
0301 basic medicine ,Cancer Research ,Lung Neoplasms ,Cell Cycle Proteins ,Mice, SCID ,Snail ,Metastasis ,Mice ,Random Allocation ,Basic and Clinical Immunology ,GSK‐3β ,0302 clinical medicine ,Mice, Inbred NOD ,Neoplasm Metastasis ,Phosphorylation ,Zinc finger ,Tight junction ,Cell Polarity ,General Medicine ,Prognosis ,Par3 ,Phenotype ,Neoplasm Proteins ,Oncology ,Gene Knockdown Techniques ,030220 oncology & carcinogenesis ,bladder cancer ,Original Article ,Biology ,Tight Junctions ,03 medical and health sciences ,biology.animal ,medicine ,Animals ,Humans ,metastasis ,Neoplasm Invasiveness ,Transcription factor ,Adaptor Proteins, Signal Transducing ,Cell Nucleus ,Glycogen Synthase Kinase 3 beta ,Bladder cancer ,Original Articles ,medicine.disease ,030104 developmental biology ,Urinary Bladder Neoplasms ,Mutation ,Zonula Occludens-1 Protein ,Cancer research ,Snail Family Transcription Factors ,Nuclear localization sequence - Abstract
Bladder cancer (BLCA) remains the leading cause of cancer‐related mortality among genitourinary malignancies worldwide. BLCA metastasis represents the primary reason for its poor prognosis. In this study, we report that decreased expression of partitioning defective 3 (Par3), a polarity protein (encoded by PARD3), is associated with tumor aggressive phenotypes and poor prognosis in BLCA patients. Consistently, ablation of Par3 promotes the metastasis and invasion of BLCA cells in vitro and in vivo. Further studies reveal that zinc finger protein Snail represses the expression of Par3 by binding to E2‐box (CAGGTG) of PARD3 promoter‐proximal. Inhibition of GSK‐3β promotes the expression and nuclear localization of Snail and then reduces the expression of Par3, resulting in the metastasis and invasion of BLCA cells. Moreover, we detected the interaction between Par3 (936‐1356 aa) and ZO‐1 (1372‐1748 aa), which is involved in the maintenance of tight junction. Together, our results demonstrate that the GSK‐3β/Snail/Par3/ZO‐1 axis regulates BLCA metastasis, and Snail is a major regulator for Par3 protein expression in BLCA., We report here that (a) polarity protein Par3 is frequently lost in BLCA patients and is associated with muscle‐invasive phenotypes and poor prognosis; (b) Par3 deficiency is required for BLCA invasion and metastasis in vitro and in vivo; (c) Snail suppresses Par3 expression through its binding to PARD3 E2‐box; and (d) overexpression of Par3 abolishes LiCl‐ or Snail‐induced BLCA metastatic behaviors, suggesting a role of the GSK‐3β/Snail/Par3 axis in regulating BLCA metastasis.
- Published
- 2021
88. Effect of cloud-based information systems on the agile development of industrial business process management.
- Author
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Wang, Jian, Xu, Yi-Peng, and She, Chen
- Subjects
BUSINESS process management ,INDUSTRIALIZATION ,MANUFACTURING processes ,INFORMATION storage & retrieval systems ,SYSTEMS development - Abstract
Business process management (BPM) has been the main driver behind company optimization and operational efficiency. However, the digitization era we live in necessitates that organizations be agile and adaptable. Delivering unprecedented rates of automation-fueled agility is necessary to be a part of this digital revolution. On the other hand, BPM automation cannot be done only by concentrating on procedure space and traditional planning methodologies. With the introduction of BPM, where the deployment of BPM with cloud computing has undergone enormous development lately, cloud computing has been considered a particularly active topic of study. Cloud computing points to the provision of dependable computing environments based on improved infrastructure availability and service quality without imposing a significant cost load. This research aims to discover the relationship between technical factors, financial factors, environmental factors, security of the cloud-based information systems, and the agile development of industrial BPM (IBPM). The present study aims to fill this gap and show how partial least squares structural equation modeling (SEM) can be employed in this field. Importance–performance map analysis (IPMA) evaluated the importance and performance of factors in the SEM. IPMA enables the identification of factors with relatively low performance but relatively high importance in shaping dependent variables. The empirical findings showed that four key factors (technical, financial, environmental, and security) positively influence the agile development of IBPM. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
89. Characterization of an autonomous pathway complex that promotes flowering in Arabidopsis
- Author
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Pei-Lin Qi, Hao-Ran Zhou, Qiang-Qiang Zhao, Chao Feng, Yong-Qiang Ning, Yin-Na Su, Xue-Wei Cai, Dan-Yang Yuan, Zhao-Chen Zhang, Xiao-Min Su, Shan-Shan Chen, Lin Li, She Chen, and Xin-Jian He
- Subjects
Arabidopsis Proteins ,Gene Expression Regulation, Plant ,Mutation ,Genetics ,Arabidopsis ,MADS Domain Proteins ,Flowers - Abstract
Although previous studies have identified several autonomous pathway components that are required for the promotion of flowering, little is known about how these components cooperate. Here, we identified an autonomous pathway complex (AuPC) containing both known components (FLD, LD and SDG26) and previously unknown components (EFL2, EFL4 and APRF1). Loss-of-function mutations of all of these components result in increased FLC expression and delayed flowering. The delayed-flowering phenotype is independent of photoperiod and can be overcome by vernalization, confirming that the complex specifically functions in the autonomous pathway. Chromatin immunoprecipitation combined with sequencing indicated that, in the AuPC mutants, the histone modifications (H3Ac, H3K4me3 and H3K36me3) associated with transcriptional activation are increased, and the histone modification (H3K27me3) associated with transcriptional repression is reduced, suggesting that the AuPC suppresses FLC expression at least partially by regulating these histone modifications. Moreover, we found that the AuPC component SDG26 associates with FLC chromatin via a previously uncharacterized DNA-binding domain and regulates FLC expression and flowering time independently of its histone methyltransferase activity. Together, these results provide a framework for understanding the molecular mechanism by which the autonomous pathway regulates flowering time.
- Published
- 2022
90. Magnetic-Structural Coupled Simulation of Power Transformer Winding Cumulative Effect
- Author
-
Xiaoqing Lin, Jun Liu, Feng Wang, Wenhao Ai, Zhongxiang Li, and She Chen
- Published
- 2022
91. Short-time X-ray Irradiation as a Non-contact Charge Dissipation Solution for Insulators in HVDC GIS/GIL
- Author
-
Feng Wang, Lipeng Zhong, Yi Xie, She Chen, Liang Fangwei, and Chuanyang Li
- Subjects
Materials science ,business.industry ,Insulator (electricity) ,Dissipation ,Switchgear ,Sulfur hexafluoride ,chemistry.chemical_compound ,Electric power transmission ,chemistry ,Arc flash ,Optoelectronics ,High-voltage direct current ,Surface charge ,Electrical and Electronic Engineering ,business - Abstract
The demand for DC gas-insulated switchgear/gas-insulated transmission line (GIS/GIL) becomes more and more urgent in recent years owing to the rapid development of high voltage direct current (HVDC) transmission systems. Insulators in DC GIS/GIL could easily accumulate a large number of charges on its surface during long-term operation, which might lead to overstressing of polymeric insulation or surface flashover. Therefore, it is of great significance to propose an effective method for dissipating extra surface charges. However, achieving charge dissipation without opening the tank is still a great challenge to SF 6 -insulated equipment for a long time. In this paper, a novel method, which is named X-ray based non-contact charge dissipation method (XNCDM) for insulators in SF 6 -insulated equipment, is proposed. The effects of X-ray irradiation on the charges dissipation and the influences of irradiation dose were experimentally investigated in SF 6 . The mechanisms underlying are discussed in detail. Results show that surface charges on the insulator can be almost completely dissipated after short-time X-ray irradiation with enough dose, owing to the significant enhancement of electric conduction along the insulator surface and charge neutralization by gas ions near the gas-solid interface. This paper provides a novel technique for realizing rapid surface charge dissipation on the insulator, which is of great significance for a variety of engineering applications of DC GIS/GIL.
- Published
- 2021
92. The role of Sphingomyelin synthase 2 (SMS2) in platelet activation and its clinical significance
- Author
-
Ge Zhang, Yuting Zhang, She Chen, Si Zhang, Liang Hu, Hao Lin, Bing Fan, Lin Chang, Ruyi Xue, Yifan Guo, and Zhanyan Gao
- Subjects
0303 health sciences ,Akt/PKB signaling pathway ,business.industry ,Research ,Platelet ,Thrombosis ,Hematology ,Clot retraction ,030204 cardiovascular system & hematology ,Pharmacology ,03 medical and health sciences ,0302 clinical medicine ,D609 ,Medicine ,Diseases of the blood and blood-forming organs ,Platelet activation ,SMS2 ,Signal transduction ,RC633-647.5 ,Sphingomyelin ,business ,Lipid raft ,PI3K/AKT/mTOR pathway ,030304 developmental biology - Abstract
Background Sphingomyelin (SM) is an essential component of biological lipid rafts, and it plays an indispensable role in maintaining plasma membrane stability and in mediating signal transduction. The ultimate biosynthesis of SM is catalyzed by two sphingomyelin synthases (SMSs) namely SMS1 and SMS2, which are selectively distributed in the trans-Golgi apparatus and the plasma membrane. It has been demonstrated that SMS2 acts as an irreplaceable molecule in the regulation of transmembrane signaling, and loss of SMS2 has been reported to worsen atherosclerosis and liver steatosis. However, the function of SMS2 in platelet activation and its association with the pathological process of thrombosis in acute coronary syndrome (ACS) and portal hypertension (PH) remain unclear. Methods In this study, we tested the role of SMS2 in platelet activation and thrombosis using SMS2 knockout (SMS2 –/–) mice and SMS2-specific inhibitor, D609. Furthermore, we detected SMS2 expression in patients with ACS and PH. Results SMS2 –/– platelets showed significant reduction in platelet aggregation, spreading, clot retraction and in vivo thrombosis. Similar inhibitory effects on platelet activation were detected in D609-treated wild-type platelets. PLCγ/PI3K/Akt signaling pathway was inhibited in SMS2 –/– platelets and D609-treated wild-type platelets. In addition, we discovered that platelet SMS2 expression was remarkably increased in patients with ACS and PH, compared with healthy subjects. Conclusions Our study indicates that SMS2 acts as a positive regulator of platelet activation and thrombosis, and provides a theoretical basis for the potential use of D609 in anti-thrombosis treatment.
- Published
- 2021
93. The CBP/p300 histone acetyltransferases function as plant‐specific MEDIATOR subunits in Arabidopsis
- Author
-
She Chen, Jing Guo, Yin-Na Su, Long Wei, Xin-Jian He, Xue-Wei Cai, Lin Li, and Shan-Shan Chen
- Subjects
0106 biological sciences ,0301 basic medicine ,Arsenate Reductases ,Arabidopsis ,RNA polymerase II ,Flowers ,Plant Science ,01 natural sciences ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,Histones ,03 medical and health sciences ,Mediator ,Gene Expression Regulation, Plant ,Transcription (biology) ,Transcriptional regulation ,Transcription factor ,Histone Acetyltransferases ,Mediator Complex ,biology ,Arabidopsis Proteins ,Chemistry ,Plants, Genetically Modified ,biology.organism_classification ,Cell biology ,030104 developmental biology ,Histone ,biology.protein ,RNA Polymerase II ,010606 plant biology & botany - Abstract
In eukaryotes, MEDIATOR is a conserved multi-subunit complex that links transcription factors and RNA polymerase II and that thereby facilitates transcriptional initiation. Although the composition of MEDIATOR has been well studied in yeast and mammals, relatively little is known about the composition of MEDIATOR in plants. By affinity purification followed by mass spectrometry, we identified 28 conserved MEDIATOR subunits in Arabidopsis thaliana, including putative MEDIATOR subunits that were not previously validated. Our results indicated that MED34, MED35, MED36, and MED37 are not Arabidopsis MEDIATOR subunits, as previously proposed. Our results also revealed that two homologous CBP/p300 histone acetyltransferases, HAC1 and HAC5 (HAC1/5) are in fact plant-specific MEDIATOR subunits. The MEDIATOR subunits MED8 and MED25 (MED8/25) are partially responsible for the association of MEDIATOR with HAC1/5, MED8/25 and HAC1/5 co-regulate gene expression and thereby affect flowering time and floral development. Our in vitro observations indicated that MED8 and HAC1 form liquid-like droplets by phase separation, and our in vivo observations indicated that these droplets co-localize in the nuclear bodies at a subset of nuclei. The formation of liquid-like droplets is required for MED8 to interact with RNA polymerase II. In summary, we have identified all of the components of Arabidopsis MEDIATOR and revealed the mechanism underlying the link of histone acetylation and transcriptional regulation.
- Published
- 2021
94. A histone H3K27me3 reader cooperates with a family of PHD finger‐containing proteins to regulate flowering time in Arabidopsis
- Author
-
Qiu-Yuan Zhao, Feng Qian, Xin-Jian He, Yu-Lu Li, Jian-Hua Sui, She Chen, Yin-Na Su, Lin Li, and Tie-Nan Zhang
- Subjects
0106 biological sciences ,0301 basic medicine ,Arabidopsis ,RNA polymerase II ,Flowers ,macromolecular substances ,Plant Science ,01 natural sciences ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Histone H3 ,Gene Expression Regulation, Plant ,Transcription (biology) ,Transcriptional regulation ,BAH domain ,biology ,Arabidopsis Proteins ,fungi ,food and beverages ,biology.organism_classification ,Cell biology ,030104 developmental biology ,Histone ,PHD finger ,Mutation ,biology.protein ,010606 plant biology & botany - Abstract
Trimethylated histone H3 lysine 27 (H3K27me3) is a repressive histone marker that regulates a variety of developmental processes, including those that determine flowering time. However, relatively little is known about the mechanism of how H3K27me3 is recognized to regulate transcription. Here, we identified BAH domain-containing transcriptional regulator 1 (BDT1) as an H3K27me3 reader. BDT1 is responsible for preventing flowering by suppressing the expression of flowering genes. Mutation of the H3K27me3 recognition sites in the BAH domain disrupted the binding of BDT1 to H3K27me3, leading to de-repression of H3K27me3-enriched flowering genes and an early-flowering phenotype. We also found that BDT1 interacts with a family of PHD finger-containing proteins, which we named PHD1-6, and with CPL2, a Pol II carboxyl terminal domain (CTD) phosphatase responsible for transcriptional repression. Pull-down assays showed that the PHD finger-containing proteins can enhance the binding of BDT1 to the H3K27me3 peptide. Mutations in all of the PHD genes caused increased expression of flowering genes and an early-flowering phenotype. This study suggests that the binding of BDT1 to the H3K27me3 peptide, which is enhanced by PHD proteins, is critical for preventing early flowering.
- Published
- 2021
95. Surface Charge Inversion Method on Cylindrical Insulators Based on Surface Potentials Measured Online
- Author
-
Feng Wang, Lipeng Zhong, Fangwei Liang, She Chen, Tan Yanghong, and Qiuqin Sun
- Subjects
010302 applied physics ,Kelvin probe force microscope ,Materials science ,Multiphysics ,Charge density ,Electrostatics ,01 natural sciences ,Computational physics ,Electric field ,0103 physical sciences ,Surface charge ,Electric potential ,Electrical and Electronic Engineering ,Voltage - Abstract
In this paper, a model of the Kelvin probe is established in COMSOL Multiphysics based on electrostatic field theory, and it is verified by measuring the surface potentials. The influence of the probe is also investigated. An improved charge inversion method based on surface potentials measured online is proposed. The surface charge density is directly obtained by the Gauss's theorem to avoid the calculation of the inversion matrix. The improved method is verified by comparing the surface charge density calculated by the analytical method. When considering the effect of the probe, the maximum difference in surface charge density is 0.3 µC/m2 comparing to that when ignoring its effect, and the percentage of the difference is as high as 41%. The results indicate that the effects of the voltage of the probe under online measurement conditions must be considered.
- Published
- 2021
96. Morphometric analysis and genetic diversity in Glaucium (Papaveraceae) using sequence related amplified polymorphism
- Author
-
Shu, Tao, primary, Li, Chao, additional, She, Chen, additional, and Zhao, Huan-Ping, additional
- Published
- 2022
- Full Text
- View/download PDF
97. Effect of cloud-based information systems on the agile development of industrial business process management
- Author
-
Wang, Jian, primary, Xu, Yi-Peng, additional, and She, Chen, additional
- Published
- 2022
- Full Text
- View/download PDF
98. Chemical inhibition of mitochondrial fission via targeting the DRP1-receptor interaction
- Author
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Jun Yang, Peihao Chen, Yu Cao, Shanshan Liu, Wei Wang, Lin Li, Jiaojiao Li, Zhaodi Jiang, Yan Ma, She Chen, Sanduo Zheng, Xiangbing Qi, and Hui Jiang
- Subjects
Pharmacology ,Clinical Biochemistry ,Drug Discovery ,Molecular Medicine ,Molecular Biology ,Biochemistry - Published
- 2023
99. Onset of detwinning in Mg-3Al-1Zn alloy: A synchrotron-based X-ray diffraction study
- Author
-
Xie Hongming, B. Zhang, Xiaohu Yao, She Chen, N.B. Zhang, Sheng-Nian Luo, L. Lu, Y. Y. Zhang, and Zhu-bai Li
- Subjects
010302 applied physics ,Diffraction ,Materials science ,Tension (physics) ,Mechanical Engineering ,Alloy ,Metals and Alloys ,02 engineering and technology ,engineering.material ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Compression (physics) ,01 natural sciences ,Synchrotron ,law.invention ,Mechanics of Materials ,law ,0103 physical sciences ,X-ray crystallography ,Perpendicular ,engineering ,General Materials Science ,Magnesium alloy ,Composite material ,0210 nano-technology - Abstract
We investigate the onset of detwinning in magnesium alloy Mg-3Al-1Zn under continuous loading with real-time in situ synchrotron X-ray diffraction. Detwinning of the { 10 1 ¯ 2 } extension twins activated both by tension parallel to and compression perpendicular to the c-axis fibers is explored. The experimental results reveal that detwinning of the { 10 1 ¯ 2 } extension twins occurs immediately upon unloading, regardless of whether the twins are activated by tension parallel to or compression perpendicular to the c-axis fibers.
- Published
- 2021
100. Motion behaviour of metallic particle under diverging conducting electrode considering the random collision and reflection
- Author
-
Qiuqin Sun, Lipeng Zhong, She Chen, Jiayi Liu, Chengjiang Luo, and Feng Wang
- Subjects
Physics ,Stochastic process ,Position (vector) ,Electric field ,Horizontal position representation ,Reflection (physics) ,Trajectory ,Particle ,Fluid mechanics ,Mechanics ,Electrical and Electronic Engineering ,Atomic and Molecular Physics, and Optics - Abstract
An improved model for the motion dynamics of a metallic particle located in the non-uniform electric field area in the gas insulated system is proposed. To represent the special area, a diverging conducting electrode is used in this study. Based on the fluid mechanics theory, the forces imposed on metallic particle are first developed. The motion process is then divided into two modes, i.e. the particle rolls on the electrode surface and moves in the gap. The collision and reflection processes between the particle and the electrode are crucial to the motion, and they are fully considered in the proposed model. The trajectory of the particle under different voltages is obtained. The evolution of metallic particle is divided into four stages, and it is featured by four quantities, i.e. the critical jumping point, the minimum horizontal position, the falling point, and the motion time. The characteristics for each stage are analysed, and the sensitivity analysis of the quantities are performed. The impacts of the applied voltage, the particle radius, the initial position etc. are discussed. The results provide guidance for particle trap design.
- Published
- 2020
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