51. Hydrogel micropost-based qPCR for multiplex detection of miRNAs associated with Alzheimer's disease
- Author
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Woongsun Choi, Sang Kyung Kim, Seungwon Jung, Nakwon Choi, Ji Yoon Kang, Jungkyu Choi, Sang Yun Yeom, Seungho Jung, Tae Soup Shim, Soo Hyun Lee, Il-Joo Cho, and Junsun Kim
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0301 basic medicine ,DNA, Complementary ,Biomedical Engineering ,Biophysics ,Biosensing Techniques ,02 engineering and technology ,Hydrogel, Polyethylene Glycol Dimethacrylate ,Polyethylene Glycols ,03 medical and health sciences ,Alzheimer Disease ,Complementary DNA ,microRNA ,Electrochemistry ,Humans ,Multiplex ,Chemistry ,Spatial encoding ,General Medicine ,021001 nanoscience & nanotechnology ,Molecular biology ,Solution phase ,MicroRNAs ,030104 developmental biology ,Real-time polymerase chain reaction ,Human plasma ,0210 nano-technology ,Multiplex Polymerase Chain Reaction ,Biotechnology - Abstract
Quantitative polymerase chain reaction (qPCR) renders profiling of genes of interest less time-consuming and cost-effective. Recently, multiplex profiling of miRNAs has enabled identifying or investigating predominant miRNAs for various diseases such as cancers and neurodegenerative diseases. Conventional multiplex qPCR technologies mostly use colorimetric measurements in solution phase, yet not only suffer from limited multiplexing capacity but also require target-screening processes due to non-specific binding between targets and primers. Here, we present hydrogel micropost-based qPCR for multiplex detection of miRNAs associated with Alzheimer's disease (AD). Our methodology promises two key advantages compared with the conventional solution-based PCR: 1) nearly no non-specific crosstalks between targets and primers, and 2) practically valuable multiplexing by spatial encoding within a single microchamber. Specifically, we immobilized hydrogel microposts (~ 400µm in diameter) within commercially available polycarbonate PCR chips by multi-step ultraviolet (UV, 365nm) exposure. We optimized this photoimmobilization for thermal cycles of PCR as well. Acrylated forward primers incorporated in polyethylene glycol diacrylate (PEGDA) posts played a crucial role to confine fluorescent signal of cDNA amplification within the PEGDA hydrogel. To demonstrate the potential of our platform, we successfully verified multiplex detection of five miRNAs, which were reported to be highly correlated with AD, from a complex buffer of human plasma.
- Published
- 2018
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