225 results on '"Seonghun Kim"'
Search Results
52. Analyzing Teacher Competency with TPACK for K-12 AI Education
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Heeseok Jung, Seonghun Kim, Soohwan Kim, Yeonju Jang, Hyeoncheol Kim, Woojin Kim, and Seongyune Choi
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ComputingMethodologies_PATTERNRECOGNITION ,Artificial Intelligence ,Ai education ,ComputingMilieux_COMPUTERSANDEDUCATION ,Mathematics education ,Technological Pedagogical Content Knowledge ,Construct (philosophy) ,Psychology ,Effective teaching ,Curriculum ,GeneralLiterature_MISCELLANEOUS - Abstract
As the need for teaching Artificial Intelligence (AI) for K-12 is increasing, discussions on what competencies teacher should have for effective teaching of AI is overlooked. In this work, we determine what teacher competencies are necessary for improving the teaching and learning of AI for K-12 with Technological Pedagogical Content Knowledge (TPACK) framework. First, we identify current AI education resources and investigate the core foundations of AI taught to K-12. Based on the findings, we propose teacher competency for K-12 AI education by analyzing AI curricula and resources using the TPACK framework. We conclude that teachers who teach AI to K-12 students require TPACK to construct, prepare an environment, and facilitate project-based classes that solve problems using AI technologies.
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- 2021
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53. Biocatalytic characterization of Hericium erinaceus laccase isoenzymes for the oxidation of lignin derivative substrates
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Thuat Van La, Bong Hyun Sung, and Seonghun Kim
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Structural Biology ,General Medicine ,Molecular Biology ,Biochemistry - Published
- 2023
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54. TFEB–GDF15 axis protects against obesity and insulin resistance as a lysosomal stress response
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Yoonseok Heo, Seonghun Kim, Cheol Soo Choi, Yoonil Cho, Ji Woong Ahn, Shi-Young Park, Young Hwan Kim, Hyereen Kang, Jin Young Kim, Yeon Jin Jang, Yu-Mi Lim, Soyeon Lee, Myung-Shik Lee, Hye Soon Park, Seungsoo Chung, and Kook Hwan Kim
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medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Adipose tissue macrophages ,Autophagy ,Adipose tissue ,Inflammation ,Cell Biology ,Biology ,medicine.disease ,Endocrinology ,Insulin resistance ,Downregulation and upregulation ,Physiology (medical) ,Internal medicine ,Internal Medicine ,medicine ,TFEB ,medicine.symptom ,Metabolic syndrome - Abstract
TFEB, a key regulator of lysosomal biogenesis and autophagy, is induced not only by nutritional deficiency but also by organelle stress. Here, we find that Tfeb and its downstream genes are upregulated together with lipofuscin accumulation in adipose tissue macrophages (ATMs) of obese mice or humans, suggestive of obesity-associated lysosomal dysfunction/stress in ATMs. Macrophage-specific TFEB-overexpressing mice display complete abrogation of diet-induced obesity, adipose tissue inflammation and insulin resistance, which is independent of autophagy, but dependent on TFEB-induced GDF15 expression. Palmitic acid induces Gdf15 expression through lysosomal Ca2+-mediated TFEB nuclear translocation in response to lysosomal stress. In contrast, mice fed a high-fat diet with macrophage-specific Tfeb deletion show aggravated adipose tissue inflammation and insulin resistance, accompanied by reduced GDF15 level. Finally, we observe activation of TFEB–GDF15 in ATMs of obese humans as a consequence of lysosomal stress. These findings highlight the importance of the TFEB–GDF15 axis as a lysosomal stress response in obesity or metabolic syndrome and as a promising therapeutic target for treatment of these conditions. Kim et al. reveal that TFEB expression is protective in the setting of diet-induced obesity by activating the expression of GDF15 in adipose tissue macrophages in mice and humans.
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- 2021
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55. Characterization of ferroptosis in kidney tubular cell death under diabetic conditions
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Huiyoon Shin, Tae Hyun Yoo, Seonghun Kim, Jung Tak Park, Pureunchowon Lee, Jimin Park, Seung Hyeok Han, Jeongho Joo, Gyuri Kim, Shin Wook Kang, and Bo Young Nam
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0301 basic medicine ,Cell death ,Cancer Research ,Immunology ,Pharmacology ,GPX4 ,Article ,Diabetic nephropathy ,Lipid peroxidation ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,lcsh:QH573-671 ,Kidney ,Kidney diseases ,Lipid peroxide ,business.industry ,lcsh:Cytology ,Acute kidney injury ,Cell Biology ,Glutathione ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,Apoptosis ,030220 oncology & carcinogenesis ,business - Abstract
Kidney tubular cell death induced by transforming growth factor-β1 (TGF-β1) is known to contribute to diabetic nephropathy, a major complication of diabetes. Caspase-3-dependent apoptosis and caspase-1-dependent pyroptosis are also involved in tubular cell death under diabetic conditions. Recently, ferroptosis, an atypical form of iron-dependent cell death, was reported to cause kidney disease, including acute kidney injury. Ferroptosis is primed by lipid peroxide accumulation through the cystine/glutamate antiporter system Xc− (xCT) and glutathione peroxidase 4 (GPX4)-dependent mechanisms. The aim of this study was to evaluate the role of ferroptosis in diabetes-induced tubular injury. TGF-β1-stimulated proximal tubular epithelial cells and diabetic mice models were used for in vitro and in vivo experiments, respectively. xCT and GPX4 expression, cell viability, glutathione concentration, and lipid peroxidation were quantified to indicate ferroptosis. The effect of ferroptosis inhibition was also assessed. In kidney biopsy samples from diabetic patients, xCT and GPX4 mRNA expression was decreased compared to nondiabetic samples. In TGF-β1-stimulated tubular cells, intracellular glutathione concentration was reduced and lipid peroxidation was enhanced, both of which are related to ferroptosis-related cell death. Ferrostatin-1 (Fer-1), a ferroptosis inhibitor, alleviated TGF-β1-induced ferroptosis. In diabetic mice, kidney mRNA and protein expressions of xCT and GPX4 were reduced compared to control. Kidney glutathione concentration was decreased, while lipid peroxidation was increased in these mice, and these changes were alleviated by Fer-1 treatment. Ferroptosis is involved in kidney tubular cell death under diabetic conditions. Ferroptosis inhibition could be a therapeutic option for diabetic nephropathy.
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- 2021
56. Comparison between minimally invasive plate osteosynthesis and the deltopectoral approach with allogenous fibular bone graft in proximal humeral fractures
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Joon Yub Kim, Seonghun Kim, and Jinho Lee
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Deltopectoral approach ,030222 orthopedics ,medicine.medical_specialty ,Visual analogue scale ,business.industry ,medicine.medical_treatment ,Geography, Planning and Development ,Retrospective cohort study ,Bone healing ,Management, Monitoring, Policy and Law ,medicine.disease ,Surgery ,03 medical and health sciences ,0302 clinical medicine ,Plate osteosynthesis ,Radiological weapon ,Medicine ,030212 general & internal medicine ,Malunion ,business ,Reduction (orthopedic surgery) - Abstract
Background: Both allogenous fibular bone graft and minimally invasive plate osteosynthesis have been developed to reduce issues such as fixation failure, displacement, angulation, and nonunion after plate fixation of proximal humeral fractures. However, there have been no studies investigating the differences in clinical results between these methods. The purpose of this study was to investigate the clinical differences between open reduction and plate fixation via a deltopectoral approach with allogenous fibular bone graft and a minimally invasive approach, in Neer's classification two-, three-part proximal humeral fractures.Methods: In this retrospective study, 77 patients with Neer classification two-, three-part proximal humeral fractures were treated at two different institutions. Clinical and radiological evaluations were performed in 39 patients who underwent minimally invasive plate osteosynthesis at one institution (group A) and 38 patients who underwent the deltopectoral approach with allogenous fibular bone graft at another institution (group B). The results between the groups were compared.Results: The minimally invasive plate osteosynthesis procedure (group A) was significantly less time- consuming and caused less bleeding than allogenous fibular bone graft through a deltopectoral approach (group B) (P
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- 2020
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57. Study on the mesh selectivity of a drum shaped pot for finely-striate buccinum (Buccinum striatissimum) in the eastern coastal waters of Korea
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Seong-Jae Jeong, Pyungkwan Kim, Chang-Doo Park, and Seonghun Kim
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Oceanography ,biology ,Buccinum ,Drum ,Buccinum striatissimum ,biology.organism_classification ,Selectivity ,Geology - Published
- 2020
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58. Evaluation of the wastewater generated during alkaline pretreatment of biomass for feasibility of recycling and reusing
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Seonghun Kim, Sang-Dae Kim, and Seok Young Sohn
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060102 archaeology ,Renewable Energy, Sustainability and the Environment ,020209 energy ,Sodium ,Ultrafiltration ,chemistry.chemical_element ,Biomass ,06 humanities and the arts ,02 engineering and technology ,Pulp and paper industry ,Alkali metal ,law.invention ,chemistry.chemical_compound ,chemistry ,Wastewater ,Sodium hydroxide ,law ,Biofuel ,0202 electrical engineering, electronic engineering, information engineering ,0601 history and archaeology ,Filtration - Abstract
We evaluated the wastewater generated in the alkali pretreatment process of Miscanthus sacchariflorus with sodium hydroxide for the feasibility of recycling and reusing. After thermal alkali pretreatment of the biomass, the separated alkaline solution and the biomass wash water were filtrated using several different types of membranes to recover sodium hydroxide, as well as to eliminate lignin-hemicellulose fractions from the wastewater. Ion concentration, total organic carbon, and acid-hydrolyzed carbohydrate contents were analyzed to evaluate the quality of the alkaline wastewater. The data indicated that a poly(ether)sulfone-based ultrafiltration (UF) membrane filter with a low molecular weight cut-off was able to recover > 98% sodium ions and to remove > 60% of solubilized organic carbon fractions from the alkaline wastewater. These results indicated that filtration using UF membrane could be an alternative strategy to reuse wastewater and to recover the alkali catalyst in the alkali pretreatment process.
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- 2020
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59. Monitoring the online antiquarian book trade: the public good and textual heritage in South Korea
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Seulki Do, Sangeun Han, Wayne de Fremery, Sam Gyun Oh, and Seonghun Kim
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Service (business) ,Information management ,business.industry ,05 social sciences ,Library and Information Sciences ,Public relations ,Public good ,050905 science studies ,Application profile ,Formal system ,Management information systems ,Coproduction ,0509 other social sciences ,050904 information & library sciences ,business ,Private information retrieval ,Information Systems - Abstract
PurposeThis paper describes a model for integrating publicly available private information concerning textual heritage on the websites of South Korean antiquarian booksellers into the information management systems of the National Library of South Korea (NLK).Design/methodology/approachA method for formalizing the coproduction of heritage knowledge is presented, using the NLK and textual heritage as a case study.FindingsAn investigation of the systems and services of the NLK, interviews with South Korean antiquarian booksellers and the researchers' ability to design a system (including an application profile) that will facilitate the integration of data curated by antiquarian booksellers into the systems of the NLK suggest that it is possible to formalize the coproduction of heritage knowledge.Research limitations/implicationsAlthough this case study is limited to describing the information management procedures of a small number of online South Korean antiquarian booksellers and a single national library, its findings have broad implications. Through discussion of a specific case, the paper identifies a large class of resources that, if acquired, circulated and conserved by public libraries, is likely to enhance the public good provided by public libraries. It also provides an example of how public libraries can better meet their obligations as service and memory institutions by building systems that enable the coproduction of heritage resources by documenting and conserving records related to heritage transactions.Practical implicationsThe paper demonstrates that it is possible to create a formal system for coproducing heritage information.Social implicationsThe ability of public libraries to coproduce heritage information is likely to increase the public good provided by public libraries and to make heritage resources more accessible.Originality/valueThis paper presents a novel model enabling the curation of publicly available private information about antiquarian texts by a national library to aid cultural understanding and the preservation of documents describing historical texts.
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- 2020
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60. Emergence of glycogen synthase kinase-3 interaction domain enhances phosphorylation of SARS-CoV-2 nucleocapsid protein
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Jun Seop Yun, Nam Hee Kim, Hyeeun Song, So Young Cha, Kyu Ho Hwang, Jae Eun Lee, Cheol-Hee Jeong, Sang Hyun Song, Seonghun Kim, Eunae Sandra Cho, Hyun Sil Kim, and Jong In Yook
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macromolecular substances - Abstract
A structural protein of SARS-CoV-2, nucleocapsid (N) protein is abundantly expressed during viral replication. The N protein is phosphorylated by glycogen synthase kinase (GSK)-3 on the serine/arginine (SR) rich motif located in disordered regions. Although phosphorylation by GSK-3β constitutes a critical event for viral replication, the molecular mechanism underlying N phosphorylation is not well understood. In this study, we found the putative alpha-helix L/FxxxL/AxxRL motif known as the GSK-3 interacting domain (GID), commonly found in many endogenous GSK-3β binding proteins, such as Axins, FRATs, WWOX and GSKIP. Indeed, N interacts with GSK-3β similarly to Axin, and Leu to Glu substitution of the GID abolished the interaction, with loss of N phosphorylation. Unlike with endogenous GID proteins, the N interaction neither disturbs endogenous GSK-3 activity nor regulates subsequent canonical Wnt activity and the Snail-EMT program. Notably, N abundance in SARS-CoV-2 is incomparably high compared to other coronaviruses, such as 229E, OC43 and HKU1. Compared to other coronaviruses, N harbors a CDK1 primed phosphorylation site and Gly-rich linker for enhanced phosphorylation by GSK-3β. Furthermore, we found that the S202R mutant found in Delta and R203K/G204R mutant found in the Omicron variant allows increased abundance and hyper-phosphorylation of N. Our observations suggest that the emergence of GID and mutations for increased phosphorylation in N may have contributed to the emergence of SARS-CoV-2 and evolution of variants, respectively. Further study, especially in a BSL3-equipped facility, is required to elucidate the functional importance of GID and N phosphorylation in SARS-CoV-2 and variants.
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- 2022
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61. ‘Follow sourcing’ and the transplantation and localization of Korean electronics corporations in northern Vietnam
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Seonghun KIM and Yangmi Koo
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Urban Studies ,Public Administration ,Sociology and Political Science ,Geography, Planning and Development ,Nature and Landscape Conservation - Abstract
This study examines the transplantation of clusters through ‘follow sourcing’ of Korean electronics industry transnational corporations (TNCs), their suppliers and individual actors in northern Vietnam, and the ways in which geographical and organizational proximity generate spillovers to local enterprises. Advanced manufacturing facilities, relationships with suppliers and training programmes give rise to direct and indirect learning and improvements in skills and technological capabilities. Transplanted clusters via follow sourcing and localization can serve as an intermediate stage between an externally controlled satellite cluster and an advanced cluster and they afford another latecomer development path to the Chinese model of ‘obligated embeddedness’.
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- 2022
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62. Marine invertebrate sialyltransferase of the sea squirt Ciona savignyi sialylated core 1 O-linked glycans
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Seonghun Kim, Jinhyuk Lee, Doo-Byoung Oh, and Ohsuk Kwon
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Aquatic Organisms ,Glycosylation ,Sialyltransferase ,Genetic Linkage ,Saccharomyces cerevisiae ,Ciona savignyi ,Gene Expression ,Sialidase ,Biochemistry ,chemistry.chemical_compound ,Structure-Activity Relationship ,Structural Biology ,Polysaccharides ,Glycosyltransferase ,Animals ,Cloning, Molecular ,Molecular Biology ,Phylogeny ,chemistry.chemical_classification ,biology ,Lectin ,General Medicine ,biology.organism_classification ,Invertebrates ,Recombinant Proteins ,Sialyltransferases ,Sialic acid ,Enzyme Activation ,Enzyme ,chemistry ,biology.protein ,Ciona - Abstract
An invertebrate sialyltransferase, cST3Gal-I, identified from the sea squirt Ciona savignyi, was functionally characterized in vitro using recombinant enzyme expressed in yeast strains. cST3Gal-I was localized to the Golgi membrane when expressed in Saccharomyces cerevisiae. Enzymatic characterization for substrate specificity and kinetic property indicate that cST3Gal-I prefers O-glycans, rather than N-glycan, of asialoglycoproteins as substrates. Interestingly, C. savignyi sialyltransferase exhibited effectively Neu5Ac transfer to core 1 O-glycan, Gal β(1,3)GalNAc, compared to orthologous human glycosyltransferase. Further, it is shown that cST3Gal-I catalyzes the formation of α(2,3)-linkage, through lectin blot analysis with Maackia amurensis lectin and by linkage-specific sialidase treatments. The putative active sites of cST3Gal-I for putative acid/base catalysts and sialic acid acceptor/donor substrate bindings were also identical to the counterpart residues of a mammalian enzyme, porcine ST3Gal-I, as predicted through homologous structure modeling. These results could imply that an ancestral tunicate ST3Gal-I in C. savignyi would prefer O-glycan onto glycoproteins as its sialic acid acceptor than vertebrate enzymes.
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- 2021
63. A study on the mesh selectivity of hairtail (Trichiurus lepturus) caught by coastal drift gill net
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Wooseok Oh, Seong-Jae Jeong, Kyounghoon Lee, Pyungkwan Kim, Seonghun Kim, and Fisheries Resources
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Fishery ,Biology ,biology.organism_classification ,Trichiurus lepturus - Published
- 2019
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64. A study on the publication of illustration book of Korean coastal and offshore fishing boats
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Bong-Seong Bae, In-Ok Kim, Chang-Doo Park, Seong-Jae Jeong, Seonghun Kim, and Geumcheol Jeong
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Fishery ,Geography ,Fishing ,Submarine pipeline - Published
- 2019
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65. Extracting and applying evaluation criteria for ontology quality assessment
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Sam Gyun Oh and Seonghun Kim
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Information retrieval ,Relation (database) ,Syntax (programming languages) ,Computer science ,05 social sciences ,Interoperability ,Delphi method ,050201 accounting ,02 engineering and technology ,Library and Information Sciences ,Ontology (information science) ,Semantics ,020204 information systems ,Ontology components ,0502 economics and business ,0202 electrical engineering, electronic engineering, information engineering ,Reliability (statistics) ,Information Systems - Abstract
Purpose The purpose of this paper is to formulate apposite criteria for ontology evaluation and test them through assessments of existing ontologies. Design/methodology/approach A literature review provided the basis from which to extract the categories relevant to an evaluation of internal ontology components. According to the ontology evaluation categories, a panel of experts provided the evaluation criteria for each category via Delphi survey. Reliability was gauged by applying the criteria to assessments of existing smartphone ontologies. Findings Existing research tends to approach ontology evaluation through comparison with well-engineered ontologies, implementation in target applications and appropriateness/interconnection appraisals in relation to raw data, but such methodologies fall short of shedding light on the internal workings of ontologies, such as structure, semantic representation and interoperability. This study adopts its evaluation categories from previous research while also collecting concrete evaluation criteria from an expert panel and verifying the reliability of the resulting 53 criteria. Originality/value This is the first published study to extract ontology evaluation criteria in terms of syntax, semantics and pragmatics. The results can be used as an evaluation index following ontology construction.
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- 2019
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66. Reduced graphene oxide-loaded-magnetite: A Fenton-like heterogeneous catalyst for photocatalytic degradation of 2-methylisoborneol
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Mokrema Moztahida, Jiho Kim, Seonghun Kim, Asif Shahzad, Mohsin Nawaz, Jiseon Jang, and Dae Sung Lee
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Materials science ,Graphene ,General Chemical Engineering ,Composite number ,Oxide ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Heterogeneous catalysis ,01 natural sciences ,Industrial and Manufacturing Engineering ,0104 chemical sciences ,law.invention ,chemistry.chemical_compound ,Adsorption ,chemistry ,Chemical engineering ,law ,Photocatalysis ,Environmental Chemistry ,0210 nano-technology ,Photodegradation ,Magnetite - Abstract
A reduced-graphene-oxide-loaded magnetite (rGOF) composite was successfully synthesized by co-precipitation method for photocatalytic degradation of an odorous water contaminant 2-methylisoborneol (MIB). This heterogeneous Fenton-like catalyst degraded the recalcitrant MIB under both UV and solar light irradiations at neutral pH without the addition of other chemicals. Bare magnetite (Fe3O4) degraded only 22.5% of MIB because of rapid charge recombination. In comparison, the degradation efficiency increased to 99% for 10% (by weight) reduced graphene oxide (rGO) loading in magnetite. The addition of the rGO not only increased the adsorption capacity by increasing surface area but also increased the photodegradation efficiency synergistically by separating the electron–hole pairs, indicated by the photoluminescence spectra. The reduction in aggregation of Fe3O4 nanoparticles was explained by the increase in d-spacing and with FE-SEM images. The impedance and photocurrent data also proved the transfer of electron in presence of light in the hybrid composite. The rGOF composite presented excellent ferromagnetism, which made its recovery very easy. The recycled composite showed significantly high photocatalytic activity even after the fifth cycle with increased adsorption capacity of the recycled composite. Degradation mechanism and degradation pathway have been proposed and intermediates were identified.
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- 2019
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67. Role of Charge-Trapping Iodine Frenkel Defects for Hysteresis in Organic–Inorganic Hybrid Perovskite from First-Principles Calculations
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Donghwa Lee and Seonghun Kim
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Materials science ,chemistry.chemical_element ,Charge (physics) ,02 engineering and technology ,Trapping ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Iodine ,01 natural sciences ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Hysteresis ,General Energy ,chemistry ,Chemical physics ,Organic inorganic ,Density functional theory ,Physical and Theoretical Chemistry ,0210 nano-technology ,Perovskite (structure) - Abstract
First-principles density functional theory calculations are employed to provide insight into charge-trapping phenomena that lead to the I–V hysteresis in CH3NH3PbI3 (MAPbI3). Energetic studies, var...
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- 2019
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68. Total variation regularization algorithm for video stabilization in a digital camera.
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Wooram Son, Sungbin Hong, and Seonghun Kim
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- 2013
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69. Designing zero-dimensional dimer-type all-inorganic perovskites for ultra-fast switching memory
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Seonghun Kim, Youngjun Park, Jang-Sik Lee, and Donghwa Lee
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Information storage ,Materials science ,Science ,General Physics and Astronomy ,02 engineering and technology ,Type (model theory) ,010402 general chemistry ,01 natural sciences ,Stability (probability) ,Article ,General Biochemistry, Genetics and Molecular Biology ,Switching time ,Vacancy defect ,Ultra fast ,Perovskite (structure) ,Multidisciplinary ,business.industry ,General Chemistry ,021001 nanoscience & nanotechnology ,Electrical and electronic engineering ,0104 chemical sciences ,Zero (linguistics) ,Bionanoelectronics ,Optoelectronics ,0210 nano-technology ,business ,Voltage - Abstract
Resistive switching memory that uses halide perovskites (HP) has been considered as next-generation storage devices due to low operation voltage and high on/off ratio. However, the memory still faces challenges for stable operation with fast switching speed, which hinders the practical application. Thus, it should be considered from the stage of designing the HP for memory applications. Here, we design the perovskite memory using a high-throughput screening based on first-principles calculations. Total 696 compositions in four different crystal structures are investigated and essential parameters including stability, vacancy formation, and migration are considered as the descriptor. We select dimer-Cs3Sb2I9 as an optimal HP for memory; the device that uses dimer-Cs3Sb2I9 has ultra-fast switching speed (~20 ns) compared to the device that uses layer-Cs3Sb2I9 (>100 ns). The use of lead-free perovskite avoids environmental problems caused by lead in perovskite. These results demonstrate the feasibility to design the memory with ultra-fast switching speed., Halide perovskite has been applied for resistive switching memory devices, but there are challenges remained to achieve practical application. By using high-throughput screening based on first-principles calculations, the authors discover that lead-free dimer-Cs3Sb2I9 meets the requirements, which exhibits switching speed of 20 ns.
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- 2021
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70. Correction: Characterization of ferroptosis in kidney tubular cell death under diabetic conditions
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Tae Hyun Yoo, Gyuri Kim, Seonghun Kim, Shin Wook Kang, Jeongho Joo, Huiyoon Shin, Bo Young Nam, Jung Tak Park, Jimin Park, Pureunchowon Lee, and Seung Hyeok Han
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Cell death ,Adult ,Male ,Cancer Research ,Pathology ,medicine.medical_specialty ,Adolescent ,Amino Acid Transport System y+ ,Amino Acid Transport Systems ,Amino Acid Transport Systems, Acidic ,Immunology ,Cell Line ,Diabetes Mellitus, Experimental ,Kidney Tubules, Proximal ,Transforming Growth Factor beta1 ,Young Adult ,Cellular and Molecular Neuroscience ,medicine ,Animals ,Ferroptosis ,Humans ,Diabetic Nephropathies ,lcsh:QH573-671 ,Aged ,Kidney ,Kidney diseases ,Tubular cell ,lcsh:Cytology ,business.industry ,Correction ,Cell Biology ,Middle Aged ,Phospholipid Hydroperoxide Glutathione Peroxidase ,Glutathione ,Rats ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Female ,Lipid Peroxidation ,business - Abstract
Kidney tubular cell death induced by transforming growth factor-β1 (TGF-β1) is known to contribute to diabetic nephropathy, a major complication of diabetes. Caspase-3-dependent apoptosis and caspase-1-dependent pyroptosis are also involved in tubular cell death under diabetic conditions. Recently, ferroptosis, an atypical form of iron-dependent cell death, was reported to cause kidney disease, including acute kidney injury. Ferroptosis is primed by lipid peroxide accumulation through the cystine/glutamate antiporter system X
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- 2021
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71. Graph Convolutional Network for Drug Response Prediction Using Gene Expression Data
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Yinhua Piao, Kyuri Jo, Seonghun Kim, and Seockhun Bae
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neural network ,Computer science ,General Mathematics ,drug response ,Feature selection ,Computational biology ,spectral graph theory ,03 medical and health sciences ,0302 clinical medicine ,graph convolutional network ,bioinformatics ,Computer Science (miscellaneous) ,Engineering (miscellaneous) ,Gene ,030304 developmental biology ,0303 health sciences ,Biological data ,Artificial neural network ,business.industry ,Spectral graph theory ,lcsh:Mathematics ,lcsh:QA1-939 ,030220 oncology & carcinogenesis ,Graph (abstract data type) ,Personalized medicine ,business ,Biological network - Abstract
Genomic profiles of cancer patients such as gene expression have become a major source to predict responses to drugs in the era of personalized medicine. As large-scale drug screening data with cancer cell lines are available, a number of computational methods have been developed for drug response prediction. However, few methods incorporate both gene expression data and the biological network, which can harbor essential information about the underlying process of the drug response. We proposed an analysis framework called DrugGCN for prediction of Drug response using a Graph Convolutional Network (GCN). DrugGCN first generates a gene graph by combining a Protein-Protein Interaction (PPI) network and gene expression data with feature selection of drug-related genes, and the GCN model detects the local features such as subnetworks of genes that contribute to the drug response by localized filtering. We demonstrated the effectiveness of DrugGCN using biological data showing its high prediction accuracy among the competing methods.
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- 2021
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72. A multi-omics approach to assess production of the valuable peptides and amino acids in porcine blood protein hydrolysate
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Seonghun Kim
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Food Science - Published
- 2022
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73. Optimization of an RC frame structure based on a plastic analysis and direct search of a section database
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SeongHun Kim and Hyo-Gyoung Kwak
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Mechanics of Materials ,Architecture ,Building and Construction ,Safety, Risk, Reliability and Quality ,Civil and Structural Engineering - Published
- 2022
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74. Highly-stable (< 3% fluctuation) Ag-based Threshold Switch with Extreme-low OFF Current of 0.1 pA, Extreme-high Selectivity of 109 and High Endurance of 109 Cycles
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Sangmin Lee, Seung-Woo Lee, Donghwa Lee, Ilya V. Karpov, Writam Banerjee, Hyunsang Hwang, Ashish Agrawal, and Seonghun Kim
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010302 applied physics ,Materials science ,Nucleation ,chemistry.chemical_element ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Subthreshold slope ,Threshold voltage ,Hafnium ,Steric repulsion ,chemistry ,Chemical physics ,Control system ,0103 physical sciences ,Current (fluid) ,0210 nano-technology ,Energy (signal processing) - Abstract
We demonstrate driving parameters to control the hybrid-filament (HF) in Ag-based threshold switching (TS) devices. To achieve statistically improved TS behavior, we engineer the nucleation energy barrier, shape of HF and steric repulsion force during TS-operation. Finally, we demonstrate TS with extremely low OFF current (0.1 pA), extremely high selectivity (> 109) with stable threshold voltage ( 109) with stable steep subthreshold slope ~ 1 mV/dec, and high device-yield in Ag based devices.
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- 2020
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75. First-Principles Investigations to Evaluate the Spin-Polarized Metal-to-Insulator Transition of Halide Cuprite Perovskites for Smart Windows
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June Ho Lee, Kyung-Yeon Doh, Eunho Kim, Donghwa Lee, and Seonghun Kim
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Cuprite ,Condensed matter physics ,Chemistry ,Halide ,Insulator (electricity) ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Metal ,Colloid and Surface Chemistry ,visual_art ,Hardware_INTEGRATEDCIRCUITS ,visual_art.visual_art_medium - Abstract
Although smart windows have received wide attention as energy-saving devices, conventional metal-to-insulator materials such as VO2 hinder their commercial usage because of their high transition te...
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- 2020
76. Metal‐Halide Perovskite Design for Next‐Generation Memories: First‐Principles Screening and Experimental Verification
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Ju-Hyun Jung, Seonghun Kim, Donghwa Lee, Jang-Sik Lee, and Youngjun Park
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Computer science ,General Chemical Engineering ,defect formation energy ,Stability (learning theory) ,General Physics and Astronomy ,Medicine (miscellaneous) ,Halide ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Electronic engineering ,General Materials Science ,Layer (object-oriented design) ,lcsh:Science ,first‐principle screening ,Perovskite (structure) ,formation energy ,Communication ,General Engineering ,021001 nanoscience & nanotechnology ,Fast switching ,Communications ,0104 chemical sciences ,CsPb2Br5 ,resistive switching memory ,Environmental stability ,lcsh:Q ,0210 nano-technology ,Energy (signal processing) ,Voltage - Abstract
Memory devices have been advanced so much, but still it is highly required to find stable and reliable materials with low‐power consumption. Halide perovskites (HPs) have been recently adopted for memory application since they have advantages of fast switching based on ionic motion in crystal structure. However, HPs also suffer from poor stability, so it is necessary to improve the stability of HPs. In this regard, combined first‐principles screening and experimental verification are performed to design HPs that have high environmental stability and low‐operating voltage for memory devices. First‐principles screening identifies 2D layered AB2X5 structure as the best candidate switching layer for memory devices, because it has lower formation energy and defect formation energy than 3D ABX3 or other layered structures (A3B2X7, A2BX4). To verify results, all‐inorganic 2D layered CsPb2Br5 is synthesized and used in memory devices. The memory devices that use CsPb2Br5 show much better stability and lower operating voltages than devices that use CsPbBr3. These findings are expected to provide new opportunity to design materials for reliable device applications based on calculation, screening, and experimental verification., A design of halide perovskites (HP) for use in resistive switching memory (RSM) by combining first‐principles screening and experimental verification is conducted. First‐principles calculations identify 2D HP structure (AB2X5) as the best candidate for RSM. To verify the calculation results, 2D‐layered CsPb2Br5 is synthesized and applied to RSM. The CsPb2Br5‐based RSM shows stable operation with low operating voltages.
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- 2020
77. Newly designed Protein Transduction Domain (PTD)-mediated BMP-7 is a potential therapeutic for peritoneal fibrosis
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Nam Hee Kim, Jong In Yook, Seonghun Kim, Dong Ho Shin, Jung Tak Park, Seung Hyeok Han, Jimin Park, Hye Young Kang, Shin Wook Kang, Tae Hyun Yoo, Bo Young Nam, Hyun Sil Kim, and Meiyan Wu
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0301 basic medicine ,Male ,Epithelial-Mesenchymal Transition ,Intravital Microscopy ,medicine.medical_treatment ,Bone Morphogenetic Protein 7 ,Pharmacology ,protein transduction domain ,Peritoneal dialysis ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Drug Delivery Systems ,In vivo ,Fibrosis ,medicine ,Animals ,Humans ,Peritoneal Fibrosis ,and peritoneal fibrosis ,PTD‐BMP‐7 ,biology ,business.industry ,Growth factor ,Cell Biology ,Original Articles ,medicine.disease ,Immunohistochemistry ,Recombinant Proteins ,Rats ,Bone morphogenetic protein 7 ,Fibronectin ,Disease Models, Animal ,030104 developmental biology ,Treatment Outcome ,030220 oncology & carcinogenesis ,Drug Design ,biology.protein ,Molecular Medicine ,Female ,Original Article ,business ,Type I collagen ,Biomarkers - Abstract
While the bone morphogenetic protein‐7 (BMP‐7) is a well‐known therapeutic growth factor reverting many fibrotic diseases, including peritoneal fibrosis by peritoneal dialysis (PD), soluble growth factors are largely limited in clinical applications owing to their short half‐life in clinical settings. Recently, we developed a novel drug delivery model using protein transduction domains (PTD) overcoming limitation of soluble recombinant proteins, including bone morphogenetic protein‐7 (BMP‐7). This study aims at evaluating the therapeutic effects of PTD‐BMP‐7 consisted of PTD and full‐length BMP‐7 on epithelial‐mesenchymal transition (EMT)‐related fibrosis. Human peritoneal mesothelial cells (HPMCs) were then treated with TGF‐β1 or TGF‐β1 + PTD‐BMP‐7. Peritoneal dialysis (PD) catheters were inserted into Sprague‐Dawley rats, and these rats were infused intra‐peritoneally with saline, peritoneal dialysis fluid (PDF) or PDF + PTD‐BMP‐7. In vitro, TGF‐β1 treatment significantly increased fibronectin, type I collagen, α‐SMA and Snail expression, while reducing E‐cadherin expression in HPMCs (P
- Published
- 2020
78. Fishing performance for a gill net in accordance with changing of the net hanging ratio
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Fisheries Resources Researcher, Wooseok Oh, Seong-Jae Jeong, Kyounghoon Lee, Seonghun Kim, and Pyungkwan Kim
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Fishery ,Fishing ,Net (polyhedron) ,Environmental science - Published
- 2018
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79. A Study on Influential Factors of Middle and High School Students Status Delinquency Using the Multi-level Survival Analysis
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Seonghun Kim
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Juvenile delinquency ,General Medicine ,Psychology ,Survival analysis ,Demography - Published
- 2018
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80. Fishing performance of a coastal drift net in accordance with materials of the environmentally-friendly biodegradable net twine
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Seonghun Kim, Ji-Hyun Lim, Pyungkwan Kim, Wooseok Oh, Jae-Hyun Bae, and Seong-Jae Jeong
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Environmental protection ,Fishing ,Environmental science ,Environmentally friendly - Published
- 2018
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81. Sunlight-charged heterojunction TiO2 and WO3 particle-embedded inorganic membranes for night-time environmental applications
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Hyunwoong Park, Sun Hee Yoon, Seonghun Kim, Dong Suk Han, Ahmed Abdel-Wahab, and Rand Elshorafa
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Kinetics ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,law.invention ,chemistry.chemical_compound ,Membrane ,chemistry ,X-ray photoelectron spectroscopy ,law ,Photocatalysis ,Water treatment ,Irradiation ,Physical and Theoretical Chemistry ,Hexavalent chromium ,0210 nano-technology ,Filtration ,Nuclear chemistry - Abstract
A metal oxide-heterojunction photocatalyst is developed to harvest sunlight, store the energy in electrons, and apply the stored energy in water treatment. Light-absorbing nanoparticular and nanotubular TiO2 are hybridized with electron-storing WO3 at different weight ratios of TiO2 to WO3 (e.g., TW25 represents a composite of 25 wt% TiO2 and 75 wt% WO3). The ability of the TW composite to utilize the stored electrons is examined for the reduction of hexavalent chromium (Cr(VI)). In the photoelectrochemical (PEC) tests, irradiation using simulated sunlight (AM 1.5, 100 mW cm−2) leads to a rapid shift in the open-circuit potential (OCP) of the TW electrodes to the negative potential region (photocharging process). The termination of irradiation causes a gradual shift of the OCP to the positive potential region over 20 h (discharging process). Spiked Cr(VI) added to the solution with pre-photocharged TW electrodes is efficiently removed; the kinetics of this process depends on the TW composition (25, 50, or 75 wt%), TiO2 morphology (particular or tubular), initial Cr(VI) concentration (0.125 or 0.25 ppm), and whether the conditions are aerated or non-aerated. Based on this knowledge, TW composite-embedded inorganic membranes are synthesized and charged using sunlight. For Cr(VI) removal, single-pass and continuous circulation filtration systems are employed. The fraction of Cr(VI) removed from the circulation system is ∼30% in 4 h, which is 1.5 times that removed using the single-pass filtration system (∼20%). An X-ray photoelectron spectroscopy analysis of the TW membranes used for Cr(VI) removal reveals that Cr is not sorbed in the membrane. The W(VI) in WO3 is partially reduced to W(6−x)+ upon photocharging and is oxidized during the reduction of Cr(VI), leading to the co-existence of W6+ and W(6−x)+.
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- 2018
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82. Thyroid Hormone Replacement Reduces The Risk of Cardiovascular Diseases in Diabetic Nephropathy Patients With Subclinical Hypothyroidism
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Shin Wook Kang, Youn Kyung Kee, Hyoungnae Kim, Jong Hyun Jhee, Changhwan Seo, Misol Lee, Seonghun Kim, Hae-Ryong Yun, Seohyun Park, Tae Hyun Yoo, Min Uk Cha, Seung Hyeok Han, and Jung Tak Park
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Male ,medicine.medical_specialty ,Hormone Replacement Therapy ,Endocrinology, Diabetes and Metabolism ,030209 endocrinology & metabolism ,Type 2 diabetes ,Disease ,030204 cardiovascular system & hematology ,Diabetic nephropathy ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Hypothyroidism ,Risk Factors ,Internal medicine ,Diabetes mellitus ,Humans ,Medicine ,Diabetic Nephropathies ,Aged ,Retrospective Studies ,Subclinical infection ,business.industry ,Thyroid ,Retrospective cohort study ,General Medicine ,Middle Aged ,medicine.disease ,Thyroxine ,medicine.anatomical_structure ,Diabetes Mellitus, Type 2 ,Cardiovascular Diseases ,Transgender hormone therapy ,Asymptomatic Diseases ,Female ,business ,Diabetic Angiopathies ,Follow-Up Studies - Abstract
Patients with diabetic nephropathy (DMN) have an increased risk of cardiovascular disease (CVD). However, strategies to reduce this risk are limited. Thyroid hormone replacement therapy (THRT) in patients with hypothyroidism has been shown to reduce several surrogate markers of CVD. Therefore, we performed a study to determine if THRT would reduce CVD risk in patients with subclinical hypothyroidism (SCH) and DMN.This was a retrospective, nonrandomized study of patients with type 2 diabetes, DMN, and SCH. Those with known thyroid dysfunction or taking THRT at baseline were excluded. Patients receiving THRT for at least 180 days were included in the THRT group, while the remaining patients were assigned to the non-THRT group. The primary outcome was CVD events, which included coronary syndrome, cerebrovascular events, and peripheral artery diseases.Among the 257 patients, 83 (32.3%) were in the THRT group. The mean ages were 62.7 ± 12.3 and 66.8 ± 12.4 years in the THRT and non-THRT groups, respectively. The corresponding numbers of male patients were 32 (40.0%) and 94 (53.1%). During a mean follow-up of 38.0 ± 29.2 months, 98 CVD events were observed. Acute coronary syndrome and cerebrovascular event prevalence rates were lower in the THRT group than the non-THRT group, but there was no difference for peripheral artery diseases. Multivariate Cox analysis revealed that THRT was independently associated with a decreased CVD event risk.THRT may decrease the risk of CVD in DMN patients with SCH. Randomized trials are needed to verify this finding.CV = cardiovascular DMN = diabetic nephropathy eGFR = estimated glomerular filtration rate fT4 = free thyroxine HbA1c = glycosylated hemoglobin HR = hazard ratio hs-CRP = high-sensitivity C-reactive protein LDL-C = low-density lipoprotein cholesterol SCH = subclinical hypothyroidism T2DM = type 2 diabetes THRT = thyroid hormone replacement therapy TSH = thyroid-stimulating hormone.
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- 2018
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83. A novel core 1 O-linked glycan-specific binding lectin from the fruiting body of Hericium erinaceus
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Seonghun Kim
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0301 basic medicine ,Peanut agglutinin ,Glycan ,Glycosylation ,Sus scrofa ,Carbohydrates ,Biochemistry ,Chromatography, Affinity ,Fungal Proteins ,03 medical and health sciences ,chemistry.chemical_compound ,Polysaccharides ,Structural Biology ,Lectins ,Animals ,Fruiting Bodies, Fungal ,Molecular Biology ,Binding selectivity ,Fucosylation ,chemistry.chemical_classification ,biology ,Chemistry ,Basidiomycota ,Hemagglutination ,Lectin ,General Medicine ,biology.organism_classification ,carbohydrates (lipids) ,030104 developmental biology ,biology.protein ,PMSF ,Glycoprotein ,Hericium erinaceus ,Peptide Hydrolases ,Protein Binding - Abstract
Mucin-type O-glycans are involved in biological functions on the cell surface as well as the glycoproteins and can also be used as specific carbohydrate biomarkers of many diseases. In this study, I purified a novel core 1 O-linked glycan specific lectin, Hericium erinaceus lecin (HeL), from the fruiting body of the mushroom Hericium erinaceus, which is known as the natural source for a sialic acid-binding lectin. Upon optimization of the purification conditions, a sequence of ion exchange, affinity, ion exchange, and size-exclusion chromatography resulted in the highest yield and best quality of lectin without protease activity. The resulting purified HeL is an apparent hexameric protein with a subunit molecular weight of 15kDa, and a pI of 4.3. In hemagglutination inhibition assay, the purified lectin was only inhibited by glycoproteins containing mucin-type O-glycans and reacted weakly with Galβ(1,3)GalNAc. Glycan array analyses showed that HeL specifically interacts with core 1 O-linked glycans as well as extended O-glycan structures containing sialylation or fucosylation. The glycan binding specificity of HeL is comparable to that of peanut agglutinin for detection of a broader range of extended core 1 O-glycan structures. Taken together, these results provide an efficient and optimized procedure for the purification of HeL from the fruiting body of the mushroom Hericium erinaceus. Moreover, HeL represents a powerful tool for analyzing core 1 and extended core 1 O- glycan structures in diagnosis assays.
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- 2018
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84. Assessment of the physical characteristics and fishing performance of gillnets using biodegradable resin (PBS/PBAT and PBSAT) to reduce ghost fishing
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Seonghun, Kim, primary, Pyungkwan, Kim, additional, Seongjae, Jeong, additional, and Kyounghoon, Lee, additional
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- 2020
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85. Surface Diffusion and Epitaxial Self‐Planarization for Wafer‐Scale Single‐Grain Metal Chalcogenide Thin Films
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Jaeseon Kim, Minsik Kong, Kaliannan Thiyagarajan, Seonghun Kim, Junghyeok Kwak, Monalisa Pal, Anupam Giri, Donghwa Lee, Unyong Jeong, Writam Banerjee, Geonwoo Kim, Revannath Dnyandeo Nikam, Hyun Hwi Lee, Manish Kumar, and Hyunsang Hwang
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Surface diffusion ,Materials science ,Chalcogenide ,business.industry ,Mechanical Engineering ,Epitaxy ,Grain size ,chemistry.chemical_compound ,chemistry ,Mechanics of Materials ,Chemical-mechanical planarization ,Scanning transmission electron microscopy ,Optoelectronics ,General Materials Science ,Wafer ,Thin film ,business - Abstract
Although wafer-scale single-grain thin films of 2D metal chalcogenides (MCs) have been extensively sought after during the last decade, the grain size of the MC thin films is still limited in the sub-millimeter scale. A general strategy of synthesizing wafer-scale single-grain MC thin films by using commercial wafers (Si, Ge, GaAs) both as metal source and epitaxial collimator is presented. A new mechanism of single-grain thin-film formation, surface diffusion, and epitaxial self-planarization is proposed, where chalcogen elements migrate preferentially along substrate surface and the epitaxial crystal domains flow to form an atomically smooth thin film. Through synchrotron X-ray diffraction and high-resolution scanning transmission electron microscopy, the formation of single-grain Si2 Te3 , GeTe, GeSe, and GaTe thin films on (111) Si, Ge, and (100) GaAs is verified. The Si2 Te3 thin film is used to achieve transfer-free fabrication of a high-performance bipolar memristive electrical-switching device.
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- 2021
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86. Analysis of Cost Effectiveness on Fishing Trip Cost by Adopting Photovoltaic Power Generation System in a Small Fishing Vessel
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Dong-Gil Lee, Yongsu Yang, Seonghun Kim, Seong-Jae Jeong, and Pyungkwan Kim
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Cost effectiveness ,Photovoltaic power generation ,020209 energy ,Fishing ,0202 electrical engineering, electronic engineering, information engineering ,Environmental science ,Fishing trip ,02 engineering and technology ,Environmental economics ,021001 nanoscience & nanotechnology ,0210 nano-technology - Published
- 2017
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87. Influencing Factors for Promoting Global Competency of University Students: A Focus on Group Contact and Integrated Conflict
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Seonghun Kim and Lee Kyunghwa
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Focus (computing) ,Medical education ,Group (mathematics) ,Psychology - Published
- 2017
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88. Periostin-Binding DNA Aptamer Treatment Ameliorates Peritoneal Dialysis-Induced Peritoneal Fibrosis
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Shin Wook Kang, Tae Hyun Yoo, Jung Tak Park, Jong Ha Jung, Seung Hyeok Han, Young Eun Kwon, Jimin Park, Jung Pyo Lee, Bo Young Nam, Youndong Kim, Seonghun Kim, Meiyan Wu, and Jae Eun Um
- Subjects
0301 basic medicine ,Pathology ,medicine.medical_specialty ,Small interfering RNA ,030232 urology & nephrology ,Periostin ,Extracellular matrix ,03 medical and health sciences ,0302 clinical medicine ,Peritoneum ,Downregulation and upregulation ,Fibrosis ,TGF-β1 ,Drug Discovery ,medicine ,Peritoneal Fibrosis ,periostin ,biology ,fibrosis ,lcsh:RM1-950 ,aptamer ,medicine.disease ,Fibronectin ,030104 developmental biology ,medicine.anatomical_structure ,lcsh:Therapeutics. Pharmacology ,peritoneal dialysis ,biology.protein ,Cancer research ,Molecular Medicine ,Original Article - Abstract
Peritoneal fibrosis is a major complication in peritoneal dialysis (PD) patients, which leads to dialysis discontinuation. Periostin, increased by transforming growth factor β1 (TGF-β1) stimulation, induces the expression of extracellular matrix (ECM) genes. Aberrant periostin expression has been demonstrated to be associated with PD-related peritoneal fibrosis. Therefore, the effect of periostin inhibition by an aptamer-based inhibitor on peritoneal fibrosis was evaluated. In vitro, TGF-β1 treatment upregulated periostin, fibronectin, α-smooth muscle actin (α-SMA), and Snail expression and reduced E-cadherin expression in human peritoneal mesothelial cells (HPMCs). Periostin small interfering RNA (siRNA) treatment ameliorated the TGF-β1-induced periostin, fibronectin, α-SMA, and Snail expression and restored E-cadherin expression in HPMCs. Similarly, the periostin-binding DNA aptamer (PA) also attenuated fibronectin, α-SMA, and Snail upregulation and E-cadherin downregulation in TGF-β1-stimulated HPMCs. In mice treated with PD solution for 4 weeks, the expression of periostin, fibronectin, α-SMA, and Snail was significantly increased in the peritoneum, whereas E-cadherin expression was significantly decreased. The thickness of the submesothelial layer and the intensity of Masson’s trichrome staining in the PD group were significantly increased compared to the untreated group. These changes were significantly abrogated by the intraperitoneal administration of PA. These findings suggest that PA can be a potential therapeutic strategy for peritoneal fibrosis in PD patients.
- Published
- 2017
89. Catching efficiency of the whelk pot in accordance with the pot materials in the Uljin waters, East sea
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Jong-Myung Park, Jae-Hyun Bae, Heui-Chun An, Byung-Sun Yoon, Pyungkwan Kim, Chang-Doo Park, Sung-Eic Hong, and Seonghun Kim
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Fishery ,Whelk ,Geography ,Oceanography - Published
- 2017
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90. Ricin B-like lectin orthologues from two mushrooms, Hericium erinaceus and Stereum hirsutum, enable recognition of highly fucosylated N-glycans
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Seonghun Kim
- Subjects
Glycan ,Glycoconjugate ,02 engineering and technology ,Ricin ,Biochemistry ,law.invention ,Fungal Proteins ,03 medical and health sciences ,chemistry.chemical_compound ,Structural Biology ,law ,Isolectins ,Polysaccharides ,Cell Line, Tumor ,Humans ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,Hemagglutination ,Lectin ,General Medicine ,021001 nanoscience & nanotechnology ,biology.organism_classification ,carbohydrates (lipids) ,chemistry ,biology.protein ,Recombinant DNA ,0210 nano-technology ,Agaricales ,Hericium erinaceus ,Stereum hirsutum - Abstract
The mushroom Hericium erinaceus contains isolectins, including the ricin B-like lectin HEL1 and the core 1 O-glycan-binding lectin HEL2. Recombinant HEL2 reportedly binds O-linked glycans, but recombinant HEL1 (rHEL1) has not been characterized. HEL1 and Stereum hirsutum lectin (SHL1) orthologues, which contain the typical (QxW)3 ricin-B like motif, were evaluated. Interestingly, under non-denaturing conditions, recombinant SHL1 (rSHL1) existed as a trimer and exhibited agglutination activity, whereas rHEL1 existed as a monomer with no agglutination activity. The hemagglutination activity of rSHL1 was inhibited by N-linked glycoprotein transferrin. A glycan-array analysis revealed that the two recombinant lectins had different binding intensities toward fucosylated N-glycans harboring fucose-α(1,2) galactose or fucose-α(1,4) N-acetylglucosamine. Isothermal calorimetry showed that compared with rHEL1, rSHL1 interacted more strongly with transferrin, a fucosylated glycoprotein, than with other fucosylated disaccharide glycoconjugates. Finally, rSHL1 and rHEL1 were comparable in their ability to detect highly fucosylated N-glycans within glycoproteins on the surface of SW1116 human colorectal carcinoma cells. Therefore, these ricin B-like lectins might enable detection of highly fucosylated glycoepitopes on cancer cells for diagnostic applications.
- Published
- 2019
91. Change in fishing performance of tubular pot for conger eels according to the angle of inclination to seabed
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Seonghun Kim, Pyungkwan Kim, Seongjae Jeong, Kyounghoon Lee, and Wooseok Oh
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Fishery ,biology ,Inclination angle ,Conger ,Significant difference ,Fishing ,%22">Fish ,Environmental science ,Aquatic Science ,Catch per unit effort ,biology.organism_classification ,Angle of inclination ,Seabed - Abstract
An experiment was conducted to investigate the fishing performance of tubular pots for conger eel in South Korea according to the inclination angle on the seabed. The experiment was conducted in a water tank by setting the angle of the tubular pot at 0°, 15°, 30°, 45° and 60° with respect to the bottom level. When the landing angle of the pot was relatively low, conger eels searched for the bait and focused on where the bait smell was being released. Subsequently, conger eels entered the pot. Thus, for catching conger eels, it is advantageous for the bait to be placed at the entrance side while installing the pot. The highest fishing performance in terms of catch per unit effort (CPUE) was at an inclination angle of 15°. There was a significant difference between the CPUEs and the landing angle (Kruskal-Wallis test, p = 0.009). The results of this study could be used to improve the efficiency of tubular pot operations for conger eels. Keywords: Conger eel, Fish behaviour, Fishing performance, Landing angle, Tubular pot
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- 2019
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92. Solar hydrogen peroxide production on carbon nanotubes wired to titania nanorod arrays catalyzing As(III) oxidation
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Seung Yo Choi, Hyunwoong Park, Jin Young Kim, Dong Suk Han, Seonghun Kim, and Kyung Jin Lee
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Reaction mechanism ,Materials science ,TiO2 nanorod arrays ,02 engineering and technology ,Carbon nanotube ,010402 general chemistry ,01 natural sciences ,Peroxide ,Catalysis ,law.invention ,Oxygen reduction reaction ,chemistry.chemical_compound ,law ,Arsenic oxidation ,Artificial photosynthesis ,General Environmental Science ,Process Chemistry and Technology ,Carbon electrode ,021001 nanoscience & nanotechnology ,Cathode ,0104 chemical sciences ,Anode ,chemistry ,Chemical engineering ,Nanorod ,0210 nano-technology ,Faraday efficiency - Abstract
We present an off-grid, standalone electrocatalytic H2O2 production reaction (HPR) using carbon nanotubes (CNT) wired to hydrogen-treated TiO2 nanorod (h-TNR) arrays catalyzing the oxidation of As(III) to As(V) under simulated solar light (AM 1.5; 100 mW cm?2). Loading CNT onto acid-treated carbon paper (a-CP) significantly enhances the catalytic 2-electron transfer to O2, leading to a Faradaic efficiency (FE) of ?100% for the HPR. To drive the HPR, the 2-electron oxidation of toxic As(III) to less toxic As(V) that accompanies the production of the proton/electron couples is achieved at an FE of >80% using the h-TNR arrays. The high FEs of the anodic and cathodic reactions are maintained over 10 h when a direct-current voltage of 0.7 V is applied to the h-TNR photoanode and CNT/a-CP cathode pair. The coupling of a mono-Si photovoltaic array that is one-tenth the size of h-TNR photoanode to the pair of h-TNR and CNT/a-CP successfully drives the standalone operation of both reactions at the high FEs (>90%). The surface characterization of the as-synthesized materials and the reaction mechanism are discussed in detail. - 2019 Elsevier B.V. This research was supported by the Basic Science Research Program ( 2019R1A2C2002602 and 2018R1A6A1A03024962 ), the Framework of International Cooperation Program ( NRF-2018K2A9A1A01090462 ), and the Global Research Laboratory (GRL) Program ( 2014K1A1A2041044 ) through the National Research Foundation, Korea . In addition, we are grateful for the financial support provided by the Korea CCS R&D Center (KCRC) (no. 2014M1A8A1049354 ). This publication was made possible by a grant from the Qatar National Research Fund under its National Priorities Research Program (NPRP 10-1210-160019 ). Appendix A Scopus
- Published
- 2019
93. Deep Insight into Steep‐Slope Threshold Switching with Record Selectivity (>4 × 10 10 ) Controlled by Metal‐Ion Movement through Vacancy‐Induced‐Percolation Path: Quantum‐Level Control of Hybrid‐Filament
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Hyunsang Hwang, Sangmin Lee, Seung-Woo Lee, Writam Banerjee, Donghwa Lee, and Seonghun Kim
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Materials science ,Condensed Matter Physics ,Molecular physics ,Electronic, Optical and Magnetic Materials ,Resistive random-access memory ,Biomaterials ,Metal ,Protein filament ,visual_art ,Percolation ,Vacancy defect ,Path (graph theory) ,Electrochemistry ,visual_art.visual_art_medium ,Steep slope ,Selectivity - Published
- 2021
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94. Reduced titania nanorods and Ni–Mo–S catalysts for photoelectrocatalytic water treatment and hydrogen production coupled with desalination
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Dong Suk Han, Seonghun Kim, and Hyunwoong Park
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Materials science ,Desalination ,Process Chemistry and Technology ,Chlorine oxidation reaction ,Photoelectrocatalyst ,02 engineering and technology ,Electrocatalyst ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Electrochemistry ,Hydrogen evolution reaction ,01 natural sciences ,Catalysis ,0104 chemical sciences ,Chemical engineering ,Water treatment ,0210 nano-technology ,Ternary operation ,Solar desalination ,Faraday efficiency ,General Environmental Science ,Hydrogen production - Abstract
This study presents a ternary hybrid solar desalination process coupled with photoelectrocatalytic water treatment and H2 production in a single device. The desalination of brackish water in the desalination cell is initiated via photoinduced charge generation with a thermochemically reduced TiO2 nanorod array photoanode. The chlorides transferred to the neighboring anolyte at ion-transport efficiency of ∼100% are photoelectrochemically transformed into reactive chlorine species responsible for the decomposition of urea into nitrate in the anolyte. Simultaneously, the H2 production with a Ni–Mo–S (Ni2S3/MoS2) composite catalyst grown onto porous Ni substrate is achieved at Faradaic efficiency of ∼90% in the catholyte concentrated with desalted Na+. Regardless of the operation condition, the H2 energy contributes to the reduction in the energy consumption for desalination by 25%–30%. The overall ternary hybrid process is understood systematically, and the physiochemical properties and electrochemical behavior of the Ni–Mo–S catalysts are examined. - Ministry of Trade, Industry & Energy. - Qatar National Research Fund (QNRF) grant #NPRP 10-1210-160019. - Ministry of Trade, Industry and Energy (MOTIE) grant #20011360. - National Research Foundation of Korea (NRF) grant #2018R1A6A1A03024962, 2019M1A2A2065616, 2019R1A2C2002602.
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- 2021
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95. An Efficient Approach Based on Tuned Nanoionics to Maximize Memory Characteristics in Ag‐Based Devices
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Seonghun Kim, Writam Banerjee, Hyunsang Hwang, Seung-Woo Lee, and Donghwa Lee
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Materials science ,Nanotechnology ,Nanoionics ,Electronic, Optical and Magnetic Materials - Published
- 2021
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96. Hybrid Memory Device (Memory/Selector) with Scalable and Simple Structure for XNOR‐Based Neural Network Applications
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Myounghoon Kwak, Seonghun Kim, Hyunsang Hwang, Donghwa Lee, and Changhyuck Sung
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XNOR gate ,Materials science ,Artificial neural network ,Simple (abstract algebra) ,Scalability ,Structure (category theory) ,Electronic engineering ,Resistive switching memory ,Binary neural network ,Electronic, Optical and Magnetic Materials - Published
- 2021
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97. Low Dentin Matrix Protein 1 Is Associated With Incident Cardiovascular Events in Peritoneal Dialysis Patients
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Tae Hyun Yoo, Hyoungnae Kim, Young Eun Kwon, Min Uk Cha, Jimin Park, Sungha Park, Jae Eun Um, Hyeon Chang Kim, Seohyun Park, Sung Kil Lim, Changhwan Seo, Jung Tak Park, Shin Wook Kang, Youn Kyung Kee, Meiyan Wu, Bo Young Nam, Seung Hyeok Han, Hye Young Kang, Hae-Ryong Yun, Jong Hyun Jhee, Chang Yun Yoon, Su Young Jung, Misol Lee, and Seonghun Kim
- Subjects
0301 basic medicine ,Kidney ,medicine.medical_specialty ,business.industry ,Proportional hazards model ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Incidence (epidemiology) ,Confounding ,Case-control study ,Gastroenterology ,Confidence interval ,Peritoneal dialysis ,Surgery ,03 medical and health sciences ,030104 developmental biology ,medicine.anatomical_structure ,stomatognathic system ,Internal medicine ,Medicine ,Orthopedics and Sports Medicine ,business ,Dialysis - Abstract
Recent reports demonstrated that dentin matrix protein 1 (DMP1) acts as an inhibitor of vascular calcification and might be a potential biomarker for chronic kidney disease-mineral and bone disorder; however, no clinical investigations regarding DMP1 have been performed in dialysis patients. We investigated the prognostic value of DMP1 on cardiovascular outcomes in prevalent peritoneal dialysis patients. We recruited 223 prevalent peritoneal dialysis patients and divided them into high and low DMP1 groups according to log-transformed plasma DMP1 levels. Lateral lumbar spine radiographs were used for measurement of vascular calcification. Major cardiovascular events were compared between the two groups. A Cox proportional hazards analysis determined DMP1 was independently associated with cardiovascular outcomes. In vitro mouse osteocytes were cultured in media containing indoxyl sulfate (IS), and the expressions of DMP1 were examined. The mean age was 52.1 ± 11.8 years, and 116 (52.0%) patients were male. The median value of log DMP1 was 0.91 (0.32-2.81 ng/mL). The multiple logistic regression analysis indicated that DMP1 levels were independently associated with the presence of vascular calcification after adjustment for multiple confounding factors (odds ratio = 0.719; 95% confidence interval [CI] 0.522-0.989; p = 0.043). During a mean follow-up duration of 34.6 months, incident cardiovascular events were observed in 41 (18.4%) patients. A Kaplan-Meier plot showed that the low DMP1 group had a significantly higher rate of incident cardiovascular events compared with the high DMP1 group (log-rank test, p = 0.026). In addition, multiple Cox analysis showed that low DMP1 was significantly associated with incident cardiovascular events (log 1 increase: hazard ratio = 0.855; 95% CI 0.743-0.984; p = 0.029) after adjustment for multiple confounding factors. In IS-stimulated osteocytes, mRNA and protein expression levels of DMP1 were significantly decreased compared with control osteocytes. We showed that low DMP1 levels were significantly associated with presence of vascular calcification and were independently associated with the incident cardiovascular events in prevalent peritoneal dialysis patients. DMP1 might be a potential factor contributing to cardiovascular complications in dialysis patients. © 2016 American Society for Bone and Mineral Research.
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- 2016
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98. Acoustic monitoring using multi-beam imaging sonar through a set net in the Southern Sea, Korea
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Yongsu Yang, Dong-Gil Lee, Kyounghoon Lee, Seonghun Kim, and Hyungbeen Lee
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0106 biological sciences ,Daytime ,010604 marine biology & hydrobiology ,Flux ,04 agricultural and veterinary sciences ,Aquatic Science ,Atmospheric sciences ,01 natural sciences ,Imaging sonar ,Set (abstract data type) ,Data set ,Current (stream) ,040102 fisheries ,Multi beam ,0401 agriculture, forestry, and fisheries ,Environmental science ,Diel vertical migration - Abstract
This study investigated a method for monitoring fish flux though a set net in the coastal South Sea, Korea, using sideward-looking wide angle multi-beam imaging sonar (blueview). This data set was used to examine the impact of changes in diel variation and current speed from a set net. During nighttime, the influx of fish in the set net was significantly 22 times higher than in daytime. The time when high fish flux was observed corresponded to the time of low current speed during nighttime. In contrast, the fish flux was not affecting current speed during daytime. The study provides implications for understanding fish behavior through use of a set net.
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- 2016
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99. Vertical distribution of giant jellyfish, Nemopilema nomurai using acoustics and optics
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Won Duk Yoon, Kyounghoon Lee, Kangseok Hwang, Hyungbeen Lee, and Seonghun Kim
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0106 biological sciences ,Jellyfish ,010504 meteorology & atmospheric sciences ,biology ,010604 marine biology & hydrobiology ,Scientific echosounder ,Oceanography ,01 natural sciences ,biology.animal ,Range (statistics) ,Geology ,Stereo camera ,Sea level ,0105 earth and related environmental sciences ,China sea - Abstract
Nemopilema nomurai jellyfish, which are believed to complete their development in the East China Sea, have started migrating into the Yellow Sea in recent years. We obtained biomass estimates of this species in the Yellow Sea using bottom trawl fishing gear and sighting surveys over a 5-year period. These methods are effective for obtaining N. nomurai jellyfish density estimates and information about the community distribution near the bottom or surface of the sea. To verify the vertical distributions of giant jellyfish between, we used hydroacoustic equipment, including an optical stereo camera system attached to a towed sledge and an echo counting method with scientific echosounder system. Acoustic and optical data were collected while the vessel moved at 3 knots, from which the distribution and density of N. nomurai jellyfish were analyzed. Subsequently, the camera system was towed from a 7 m mean depth to sea level, with the detection range of the acoustic system extending from an 8 m depth to the bottom surface. The optical and acoustic methods indicated the presence of vertical distribution of 0.113 (inds/m3) and 0.064 (inds/m3), respectively. However, the vertical distribution indicated that around 93% of individuals occurred at a depth range of 10–40 m; thus, a 2.4-fold greater density was estimated by acoustic echo counting compared to the optical method.
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- 2016
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100. Use of biodegradable driftnets to prevent ghost fishing: physical properties and fishing performance for yellow croaker
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Ji-Hyun Lim, Pyungkwan Kim, Petri Suuronen, Seonghun Kim, and Heui-Chun An
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0106 biological sciences ,Ecology ,biology ,010604 marine biology & hydrobiology ,Fishing ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Breaking strength ,Polybutylene succinate ,Fishery ,Larimichthys polyactis ,Long period ,%22">Fish ,Environmental science ,Netting ,Nature and Landscape Conservation - Abstract
When synthetic non-biodegradable fishing nets are lost, abandoned or discarded at sea, they may continue to catch fish and other animals for a long period of time. This phenomenon is known as ‘ghost fishing’. Biodegradable fishing nets, on the other hand, are intended to degrade or decompose after a certain period of time under water and thereby lose their ghost fishing capacity more quickly than conventional gear. A biodegradable net material, a blend of 82% polybutylene succinate (PBS) and 18% polybutylene adipate-co-terephthalate (PBAT), was developed. We examined the physical properties and degradability of the biodegradable monofilament, and compared the fishing performance of driftnets made of conventional nylon and of the biodegradable material. When dry, conventional nylon monofilament exhibited a greater breaking strength and elongation than biodegradable monofilament of the same diameter. When wet, the biodegradable monofilament exhibited a stiffness of c. 1.5-fold than nylon monofilament. This suggests that a net made of the less flexible biodegradable monofilament would have lower fishing efficiency than conventional nets. The fishing performance comparisons between the biodegradable and conventional nylon nets, however, revealed similar catch rates for yellow croaker Larimichthys polyactis. Biodegradable monofilament started to degrade after 24 months in seawater by marine organisms. We conclude that biodegradable netting may become a feasible alternative to conventional nylon netting and can contribute to reducing the duration of ghost fishing. Nonetheless, there remain many uncertainties, challenges and knowledge gaps that have to be solved before we are able to draw firm conclusions about the overall benefits of these materials in driftnet fisheries.
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- 2016
- Full Text
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