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Optogenetics combines light and genetics to enable precise control of living cells, tissues, and organisms with tailored functions. Optogenetics has the advantages of noninvasiveness, rapid responsiveness, tunable reversibility, and superior spatiotemporal resolution. Following the initial discovery of microbial opsins as light-actuated ion channels, a plethora of naturally occurring or engineered photoreceptors or photosensitive domains that respond to light at varying wavelengths has ushered in the next chapter of optogenetics. Through protein engineering and synthetic biology approaches, genetically encoded photoswitches can be modularly engineered into protein scaffolds or host cells to control a myriad of biological processes, as well as to enable behavioral control and disease intervention in vivo. Here, we summarize these optogenetic tools on the basis of their fundamental photochemical properties to better inform the chemical basis and design principles. We also highlight exemplary applications of opsin-free optogenetics in dissecting cellular physiology (designated "optophysiology") and describe the current progress, as well as future trends, in wireless optogenetics, which enables remote interrogation of physiological processes with minimal invasiveness. This review is anticipated to spark novel thoughts on engineering next-generation optogenetic tools and devices that promise to accelerate both basic and translational studies. [ABSTRACT FROM AUTHOR]

Background: As transcription factors, the TCP genes are considered to be promising targets for crop enhancement for their responses to abiotic stresses. However, information on the systematic characterization and functional expression profiles under abiotic stress of TCPs in Tartary buckwheat (Fagopyrum tataricum (L.) Gaertn.) is limited. Results: In this study, we identified 26 FtTCPs and named them according to their position on the chromosomes. Phylogenetic tree, gene structure, duplication events, and cis-acting elements were further studied and syntenic analysis was conducted to explore the bioinformatic traits of the FtTCP gene family. Subsequently, 12 FtTCP genes were selected for expression analysis under cold, dark, heat, salt, UV, and waterlogging (WL) treatments by qRT-PCR. The spatio-temporal specificity, correlation analysis of gene expression levels and interaction network prediction revealed the potential function of FtTCP15 and FtTCP18 in response to abiotic stresses. Moreover, subcellular localization confirmed that FtTCP15 and FtTCP18 localized in the nucleus function as transcription factors. Conclusions: In this research, 26 TCP genes were identified in Tartary buckwheat, and their structures and functions have been systematically explored. Our results reveal that the FtTCP15 and FtTCP18 have special cis-elements in response to abiotic stress and conserved nature in evolution, indicating they could be promising candidates for further functional verification under multiple abiotic stresses. [ABSTRACT FROM AUTHOR]

The effects of sodium dodecyl benzene sulfonate (SDBS), polyoxyethylene (20) sorbitan monolaurate (Tween 20), and their mixtures on the depuration of anthracene (Ant) and fluoranthene (Fla) individually adsorbed on the Kandelia obovata (Ko) leaf surfaces were in situ investigated. The Ko original leaf-wax microstructures have been destroyed by SDBS, Tween 20, and their mixtures at or above their critical micelle concentration (CMC). The volatilization rate constants (kV) of the adsorbed PAHs decreased with surfactants at or above their CMC resulting from the plasticizing effect and a decrease in the polarity of the Ko leaf-waxes induced by surfactants. Moreover, the photolysis rate constants (kP) of the adsorbed PAHs decreased with SDBS while increased with Tween 20 and their mixtures at or above their CMC, which can be attributed to effects of surfactants on the light adsorption behavior of Ko leaf-waxes. Overall, the effects of surfactants on the depuration of the adsorbed PAHs were dependent not only on the physical–chemical properties of surfactants but also on the micro-environment of the substrates adsorbed the PAHs. These results are of great significance for further understanding the accumulation of PAHs and could expand our knowledge about the migration mechanism of PAHs from the atmosphere by mangrove leaf surface micro-zones. [ABSTRACT FROM AUTHOR]

Understanding the molecular mechanisms and evolutionary process of plant adaptation to the heterogeneous environment caused by altitude gradients in plateau mountain ecosystems can provide novel insight into species' responses to global changes. Flower color is the most conspicuous and highly diverse trait in nature. Herein, the gene expression patterns, evolutionary adaptation and metabolites changes of different-colored flowers of alpine Rhododendron L. species along altitude gradients were investigated based on a combined analysis of transcriptomics and metabolomics. Differentially expressed genes were found to be related to the biosynthesis of carbohydrates, fatty acids, amino acids and flavonoids, suggesting their important roles in the altitude adaptability of Rhododendron species. The evolution rate of high-altitude species was faster than that of low-altitude species. Genes related to DNA repair, mitogen-activated protein kinase and ABA signal transduction, and lipoic acid and propanoate metabolism were positively selected in the flowers of high-altitude Rhododendron species and those associated with carotenoid biosynthesis pathway, ABA signal transduction and ethylene signal transduction were positively selected in low-altitude species. These results indicated that the genes with differentiated expressions or functions exhibit varying evolution during the adaptive divergence of heterogeneous environment caused by altitude gradients. Flower-color variation might be attributed to the significant differences in gene expression or metabolites related to sucrose, flavonoids and carotenoids at the transcription or metabolism levels of Rhododendron species. This work suggests that Rhododendron species have multiple molecular mechanisms in their adaptation to changing environments caused by altitude gradients. [ABSTRACT FROM AUTHOR]

BACKGROUND Ice plant is a halophyte, known for its antioxidant activity and for being a highly functional food. It is capable of increasing its contents of health‐promoting compounds when subjected to certain stresses such as salinity. The objective of this work was to determine the plant's best growing conditions to achieve both an optimal production of bioactive metabolites and high crop yield. Mesembryanthemum crystallinum were grown under semi‐controlled conditions and four saline treatments were applied at: 0, 100, 200 and 300 mmol L–1 sodium chloride (NaCl), respectively. RESULTS: The 100 mmol L–1 NaCl treatment induced a slight increase in shoot dry weight (DW) and enhanced the leaf area. At higher salinity levels, however, the shoot biomass decreased. The concentration of starch and total proteins declined as the concentration of salt increased, while the total soluble sugars (TSS) content was lower in 100 and 300 mmol L–1 NaCl treatments. Proline increased in conditions over 100 mmol L–1 NaCl. Furthermore, plants grown with 300 mmol L–1 of NaCl presented the highest values of glutathione, ascorbic acid and vitamin C. Antioxidant enzymes activity and total phenolics increased with the severity of the salinity. CONCLUSION: Ice plant accumulates high levels of health‐promoting compounds when grown with 300 mmol L–1 NaCl. A high concentration of beneficial compounds, however, is detrimental to the plant's growth. Moreover, 100 mmol L–1 NaCl treatment not only improved the concentration of bioactive and antioxidant compounds but also preserved the crop yield. It could thus be interesting to promote the cultivation of this high nutritional value plant in environments of moderate salinity. © 2021 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. [ABSTRACT FROM AUTHOR]

Leaf senescence is an integral part of plant development and is driven by endogenous cues such as leaf or plant age. Developmental senescence aims to maximize the usage of carbon, nitrogen and mineral resources for growth and/or for the sake of the next generation. This requires efficient reallocation of the resources out of the senescing tissue into developing parts of the plant such as new leaves, fruits and seeds. However, premature senescence can be induced by severe and long-lasting biotic or abiotic stress conditions. It serves as an exit strategy to guarantee offspring in an unfavorable environment but is often combined with a trade-off in seed number and quality. In order to coordinate the very complex process of developmental senescence with environmental signals, highly organized networks and regulatory cues have to be in place. Reactive oxygen species, especially hydrogen peroxide (H2O2), are involved in senescence as well as in stress signaling. Here, we want to summarize the role of H2O2 as a signaling molecule in leaf senescence and shed more light on how specificity in signaling might be achieved. Altered hydrogen peroxide contents in specific compartments revealed a differential impact of H2O2 produced in different compartments. Arabidopsis lines with lower H2O2 levels in chloroplasts and cytoplasm point to the possibility that not the actual contents but the ratio between the two different compartments is sensed by the plant cells. [ABSTRACT FROM AUTHOR]

Seed priming has long been explored as an effective value-added potential technique that results in improved germination, reduced seedling emergence time, shortened crop duration, increased stress tolerance and eventually increased higher grain production. However, the wider applicability of water or chemical-based conventional methods of seed priming is often restricted considering its deleterious effects on post-treatment storability or agricultural pollution due to the persistence of chemicals in plant systems or in the environment. In this context, the utilization of physical methods of seed priming for enhancing plant productivity has created a new horizon in the domain of seed technology. Being eco-friendly and cost-effective approaches, priming with extra-terrestrial or physical agents such as ionizing radiation such as X-rays and gamma rays and non-ionizing radiation such as ultrasonic wave, magnetic field, microwaves, and infrared light offers many advantages along with ensuring enhanced production over conventional methods. Ultraviolet radiations, bridging between ionizing and non-ionizing radiation, are important electromagnetic waves that would also be an effective priming agent. Non-ionizing radiation has certain biological advantages over ionizing radiation since it does not generate charged ions while passing through a subject, but has enough energy to cause biological effects. Extensive research works to study the effects of various non-ionizing physical priming methods are required before their wider exploitation in agriculture. With this background, this review aims to highlight the current understanding of non-ionizing physical methods of seed priming and its applicability to combat present-day challenges to achieve agro-ecological resilience. [ABSTRACT FROM AUTHOR]

To study the effects of foliar application of putrescine (distilled water (0), 0.75, 1.5, and 2.25 mM) and water deficit stress (20%, 40%, 60%, and 80% available soil water depletion (ASWD)) on the physiological, biochemical, and molecular attributes of Salvia officinalis L., a factorial experiment was performed in a completely randomized design with three replications in the growth chamber. The results of Real-Time quantitative polymerase chain reaction (qRT-PCR) analysis showed that putrescine concentration, irrigation regime, and the two-way interaction between irrigation regime and putrescine concentration significantly influenced cineole synthase (CS), sabinene synthase (SS), and bornyl diphosphate synthase (BPPS) relative expression. The highest concentration of 1,8-cineole, camphor, α-thujone, β-thujone, CS, SS, and BPPS were obtained in the irrigation regime of 80% ASWD with the application of 0.75 mM putrescine. There was high correlation between expression levels of the main monoterpenes synthase and the concentration of main monoterpenes. The observed correlation between the two enzyme activities of ascorbate peroxidase (APX) and catalase (CAT) strongly suggests they have coordinated action. On the other hand, the highest peroxidase (PO) and superoxide dismutase (SOD) concentrations were obtained with the application of 0.75 mM putrescine under the irrigation regime of 40% ASWD. Putrescine showed a significant increase in LAI and RWC under water deficit stress. There was an increasing trend in endogenous putrescine when putrescine concentration was increased in all irrigation regimes. Overall, the results suggest that putrescine may act directly as a stress-protecting compound and reduced H2O2 to moderate the capacity of the antioxidative system, maintain the membrane stability, and increase secondary metabolites under water deficit stress. [ABSTRACT FROM AUTHOR]

Background: Soil salinity adversely affects plant growth. Microbial infection and exogenous polyamine application are effective approaches to ameliorate salt injury in plants. Our previous study showed that Epichloë endophytes play an important role in improving wild barley (Hordeum brevisubulatum) salinity tolerance through polyamine metabolism modification. However, the effects of polyamine (Spd) on Epichloë endophytes-induced host tolerance to salt stress are largely unknown. The aim of this work is to determine whether exogenous polyamine influences the function of Epichloë endophytes to improve salt tolerance of H. brevisubulatum plants. Methods: Epichloë endophyte infected (E+) and endophyte free (E−) H. brevisubulatum plants were sprayed with distilled water or 1 mM spermidine (Spd) and treated with water or 200 mM NaCl. The experimental plots included four treatments: (a) CK, (b) NaCl, (c) Spd, and (d) Spd + NaCl. Dry weight, amino acid, sodium, potassium, calcium, nitrogen, phosphorus and carbon contents were quantified, Na+:K+ ratio and C:N:P stoichiometry were analyzed after 21 days exposure to NaCl treatment. Results: There was greater accumulation of aspartic acid, threonine, glutamic acid, tyrosine, phenylalanine, histidine, arginine and proline but lower cysteine in endophyte-infected plants compared to endophyte-free counterparts in response to NaCl treatment. The presence of Epichloë endophyte also significantly increased dry weight, total amino acid, potassium, root calcium, nitrogen and phosphorus content but decreased sodium, shoot calcium content and ratios of sodium/potassium, carbon/nitrogen and carbon/phosphorus, nitrogen/phosphorus under NaCl stress. The effects of endophyte to decrease sodium content, sodium/potassium ratio and increase dry weight, total amino acid, potassium, nitrogen and shoot phosphorus were much more pronounced under dual application of NaCl and exogenous spermidine treatment compared to treatments only under NaCl treatment. Conclusion: Epichloë endophytes may ameliorate the harmful effects of NaCl stress to H. brevisubulatum plants, whilst exogenous spermidine further enhanced this effect. Spermidine application to endophyte-infected seedlings decreased more of these harmful effects and mediated the function of the endophyte to suppress the negative effects of salinity stress. [ABSTRACT FROM AUTHOR]

This study aimed to investigate the effects of UV-A light-emitting diodes (LEDs) and lamps on the growth and bioactive compounds of ice plant (Mesembryanthemum crystallinum). Three-week-old seedlings were germinated and grown at 23 °C air temperature, 60% relative humidity, 1000 μmol mol−1 CO2, 200 μmol m−2 s−1 (white LEDs), and a photo-period of 12 h for 3 weeks in a plant factory with artificial lighting. Plants were supplementally irradiated with different peak wavelengths of UV-A LEDs (395, 385, 375, and 365 nm) of 30 W m−2 and UV-A lamps of 15.5 W m−2 continuously for 7 days. Treatment with 395, 385, and 375 nm increased shoot fresh and dry weights than the control at 5 and 7 days of treatment. Fv/Fm value was significantly decreased at 12 h of all UV-A treatments and consistently showed lower levels compared to the control during the entire period. The photosynthetic rates of the 395 and 385 nm treatments were significantly higher than those of the other treatments. UV-A treatment enhanced total phenolic content and antioxidant capacity compared to those of the control after 3 days of treatment. Phenylalanine ammonia-lyase activity was also increased by UV-A light exposure. The content of pinitol, myo-inositol, and sucrose was increased by UV-A radiation, and the highest values were observed in the 395 nm treatment at 5 and 7 days of treatment. Our findings suggest that supplemental radiation of UV-A with a peak wavelength near 400 nm could increase the shoot biomass and antioxidant phenolics and sugar alcohols in ice plants. [ABSTRACT FROM AUTHOR]

During their lifetimes, plants are exposed to different abiotic stress factors eliciting various physiological responses and triggering important defense processes. For UV-B radiation responses in forest trees, the genetics and molecular regulation remain to be elucidated. Here, we exposed Pinus tabuliformis Carr. a major conifer from northern China, to short-term high-intensity UV-B and employed a systems biology approach to characterize the early physiological processes and the hierarchical gene regulation, which revealed a temporal transition from primary to secondary metabolism, the buildup of enhanced antioxidant capacity and stress-signaling activation. Our findings showed that photosynthesis and biosynthesis of photosynthetic pigments were inhibited, while flavonoids and their related derivates biosynthesis, as well as glutathione and glutathione S-transferase mediated antioxidant processes, were enhanced. Likewise, stress-related phytohormones (jasmonic acid, salicylic acid and ethylene), kinase and reactive oxygen species signal transduction pathways were activated. Biological processes regulated by auxin and karrikin were, for the first time, found to be involved in plant defense against UV-B by promoting the biosynthesis of flavonoids and the improvement of antioxidant capacity in our research system. Our work evaluated the physiological and transcriptome perturbations in a conifer's response to UV-B, and generally, highlighted the necessity of a systems biology approach in addressing plant stress biology. [ABSTRACT FROM AUTHOR]

In contrast to common meiotic gene conversion, mitotic gene conversion, because it is so rare, is often ignored as a process influencing allelic diversity. We show that if there is a large enough number of premeiotic cell divisions, as seen in many organisms without early germline sequestration, such as plants, this is an unsafe position. From examination of 1.1 million rice plants, we determined that the rate of mitotic gene conversion events, per mitosis, is 2 orders of magnitude lower than the meiotic rate. However, owing to the large number of mitoses between zygote and gamete and because of long mitotic tract lengths, meiotic and mitotic gene conversion can be of approximately equivalent importance in terms of numbers of markers converted from zygote to gamete. This holds even if we assume a low number of premeiotic cell divisions (approximately 40) as witnessed in Arabidopsis. A low mitotic rate associated with long tracts is also seen in yeast, suggesting generality of results. For species with many mitoses between each meiotic event, mitotic gene conversion should not be overlooked. Gene conversion associated with meiosis has long been a focus of attention in population genomics, but mitotic conversion has been relatively overlooked as it was thought to be rare. Analysis in plants suggests that this could be a mistake; long tract lengths and multiple mitoses in species lacking germline sequestration suggest that mitotic conversion, although rare per mitosis, should not be ignored. [ABSTRACT FROM AUTHOR]

The increased ultraviolet radiation (UV) due to the altered stratospheric ozone leads to multiple plant physiological and biochemical adaptations, likely affecting their interaction with other organisms, such as pests and pathogens. Arbuscular mycorrhizal fungi (AMF) and UV-B treatment can be used as eco-friendly techniques to protect crops from pests by activating plant mechanisms of resistance. In this study, we investigated plant (Lactuca sativa) response to UV-B exposure and Funneliformis mosseae (IMA1) inoculation as well as the role of a major insect pest, Spodoptera littoralis. Lettuce plants exposed to UV-B were heavier and taller than non-irradiated ones. A considerable enrichment in phenolic, flavonoid, anthocyanin, and carotenoid contents and antioxidant capacity, along with redder and more homogenous leaf color, were also observed in UV-B-treated but not in AMF-inoculated plants. Biometric and biochemical data did not differ between AMF and non-AMF plants. AMF-inoculated plants showed hyphae, arbuscules, vesicles, and spores in their roots. AMF colonization levels were not affected by UV-B irradiation. No changes in S. littoralis-feeding behavior towards treated and untreated plants were observed, suggesting the ability of this generalist herbivore to overcome the plant chemical defenses boosted by UV-B exposure. The results of this multi-factorial study shed light on how polyphagous insect pests can cope with multiple plant physiological and biochemical adaptations following biotic and abiotic preconditioning., (© 2023. The Author(s).)

Background: Gloriosa superba L. (Colchicaceae) is a high-value medicinal plant indigenous to Africa and Southeast Asia. Its therapeutic benefits are well-established in traditional medicines including Ayurveda. It is well known for its natural bioactive compound colchicine which exhibits a wide range of pharmacological activities i.e. rheumatism, gout and was also introduced into clinical practices. The increasing demand as well as its illegal harvesting has brought this valuable plant under threatened category. Methods: The present investigation describes a microwave assisted extraction (MAE) strategy coupled with a densitometric-high performance thin layer chromatographic (HPTLC) methodology for the analysis of colchicine from 32 different populations of G. superba. A Box-Behnken statistical design (3 level factor) has been employed to optimize MAE, in which power of microwave, time of irradiation, aqueous ethanol and pH were used as independent variables whereas colchicine was used as the dependent variables. Chromatography was carried out on Silica gel 60 F254 TLC plates with toluene: methanol, 85:15 (v/v) being used as solvent system. Densitometric measurement was performed at λ=254 nm following post-derivatization (10% methanolic sulphuric acid). Results: Optimal conditions for extraction to obtain the maximum colchicine yield was found to be 7.51 mg g− 1 which was very close to be predicted response 7.48 mg g− 1 by maintaining microwave power (460 W), irradiation time (6.4 min), aqueous ethanol-30, pH -3. Colchicine content ranged between 2.12–7.58 mg g− 1 among 32 G. superba populations in which only three chemotypes viz. GS- 1, GS- 3, and GS- 2 collected from West Bengal and Sikkim, respectively exhibited maximum yield of colchicine. Conclusion: Therefore, this newly developed optimized MAE coupled with HPTLC densitometry methodology not only quantifies colchicine in order to identify elite chemotypes of G. superba, but it also encourages in selecting high yielding populations of the plants for industrial use and economic boost for the farmers. This validated, simple and reproducible HPTLC protocol is being used for the first time to estimate colchicine from natural populations of G. superba obtained from 32 different geographical regions of India. [ABSTRACT FROM AUTHOR]

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In plants, brassinosteroids (BRs) are a class of steroidal hormones that are involved in numerous physiological responses. However, the function of BRs in cold tolerance in cotton has not been explored. In this study, cotton seedlings were treated with five concentrations (0, 0.05, 0.1, 0.2, 0.5 and 1.0 mg/L) of 24-Epibrassinolide (EBR) at 4°C. We measured the electrolyte leakage, malondialdehyde (MDA) content, proline content, and net photosynthesis rate (Pn) of the seedlings, which showed that EBR treatment increased cold tolerance in cotton in a dose-dependent manner, and that 0.2 mg/L is an optimum concentration for enhancing cold tolerance. The function of EBR in cotton cotyledons was investigated in the control 0 mg/L (Cold+water) and 0.2 mg/L (Cold+EBR) treatments using RNA-Seq. A total of 4,001 differentially expressed genes (DEGs), including 2,591 up-regulated genes and 1,409 down-regulated genes were identified. Gene Ontology (GO) and biochemical pathway enrichment analyses showed that EBR is involved in the genetic information process, secondary metabolism, and also inhibits abscisic acid (ABA) and ethylene (ETH) signal transduction. In this study, physiological experiments showed that EBR can increase cold tolerance in cotton seedlings, and the comprehensive RNA-seq data shed light on the mechanisms through which EBR increases cold tolerance in cotton seedlings. [ABSTRACT FROM AUTHOR]

Ultraviolet (UV) radiation has emerged as an environmental cue with potential uses to enhance plant protection against arthropod pests in agriculture. UV can augment constitutive and inducible plant defenses against herbivorous arthropods. Here we investigated whether application of supplemental UV to chrysanthemum (Chrysanthemum × morifolium Ramat) cuttings during their rooting phase enhanced plant resistance to an important insect pest, Western flower thrips (Frankliniella occidentalis). For this, we analyzed how several daily UV exposure times affected plant damage by thrips on three different chrysanthemum cultivars. The most effective UV dose and responsive cultivar were further used to determine the UV effects on host plant preference by thrips, leaf metabolome and the induction of jasmonic acid (JA)-associated defenses. Our results showed that while short UV daily exposure times increased chrysanthemum resistance to thrips, longer exposure times had the opposite effect. Furthermore, we showed that UV-mediated induction of chrysanthemum resistance to thrips was genotype dependent and can persist after the end of the of the UV treatment. Yet, this induction was not transferred to the next generation from mother plants to cuttings. Nontargeted metabolomic, enzymatic and hormone analyses further revealed that UV slightly affected the leaf metabolome of chrysanthemum plants, and it enhanced the induction of JA-associated signaling after thrips infestation. Taken together, our results suggest that supplemental UV might modulate both constitutive and inducible chrysanthemum defenses against thrips. [ABSTRACT FROM AUTHOR]

Previous studies suggested that holocentric chromosomes may confer a selective advantage under high ionizing or UV-B radiation due to their tolerance of fragmentation, and that the first plant and animal colonizers of land in the Palaeozoic were or may have been holocentric. Holocentric chromosomes could have, therefore, aided terrestrialization of Earth's biota half a billion years ago, because leaving water meant facing a sharp increase of UV-B. Because we cannot go back in time, the hypothesis needs to be tested with present-day species using an indicator of UV-B stress. We took advantage of the fact that UV-B intensity increases with elevation and tested whether holocentric plants (six species of Cyperaceae and Juncaceae) are less stressed with increasing elevation than monocentric plants (six species of Poaceae). Phylogenetically corrected regression showed that the proxy for UV-B stress (endopolyploidy index from 671 samples measured by flow cytometry) increased with elevation in holocentric and monocentric species, but the increase was more rapid in monocentric species. Although half a billion year elapsed since terrestrialization, holocentric Cyperaceae and Juncaceae still appear less stressed by UV-B than monocentric Poaceae, despite the other counter UV-B adaptations they both have evolved (graminoid morphology, silica bodies). [ABSTRACT FROM AUTHOR]

Light regulates numerous aspects of plant growth and development like seed germination, seedling de-etiolation, pigment accumulation, cotyledon opening and flowering. Specific photoreceptors in plants sense different wavelengths of light and initiate signaling cascade leading to light-regulated responses. Between these photoreceptors and final response there are a web of transcription factors involved directly or indirectly in the signal transduction. B-Box (BBX) family of transcription factors is one of the largest family of light-regulated proteins acting as signal transducers in the light signaling pathway. B-box proteins are known for their role in light-mediated regulation of seed germination, hypocotyl elongation, flowering, circadian movements and stress tolerance. This review is an up to date compilation of the roles of BBX proteins in Arabidopsis in regulating physiological processes through red/far-red, blue and UV-B light signaling pathways in Arabidopsis. It also summarizes the roles of BBX proteins in modulating developmental pathways and stress-related signaling events in Arabidopsis and some crop species. [ABSTRACT FROM AUTHOR]

We investigated acclimatory responses of Arabidopsis plants to drought and salinity conditions before the appearance of obvious signs of damage caused by these factors. We detected changes indicating an increase in the reduction level of the chloroplast plastoquinone pool (PQ pool) 5–7 days after introduction of the stress factors. After 10–14 days, a decrease in the size of PSII light harvesting antenna was observed in plants under conditions of drought and salinity. This was confirmed by a decrease in content of PSII antenna proteins and by downregulation of gene expression levels of these proteins under the stress conditions. No changes in values of performance index and maximum quantum yield of PSII were detected. Under drought and salinity, the content of hydrogen peroxide in leaves was higher than in control leaves. Thus, we propose that reduction of the size of PSII antenna represents one of the universal mechanisms of acclimation of higher plants to stress factors and the downsizing already begins to manifest under mild stress conditions. Both the PQ pool reduction state and the hydrogen peroxide content are important factors needed for the observed rearrangement. We investigated changes in the size of photosynthetic light harvesting antenna of PSII in higher plants under drought and salinity conditions before the appearance of obvious signs of damage caused by these factors, i.e. under mild stress conditions. Based on the obtained data we propose that the acclimatory decrease in the size of PSII antenna that was earlier known as the adjustment mechanism of plants to excess light conditions represents one of the universal mechanisms of acclimation of higher plants to stress factors. [ABSTRACT FROM AUTHOR]

Main conclusion: Overexpressing a heat shock factor gene (TaHsfA6bT) from wheat provides thermotolerance in barley by constitutive expression of heat and other abiotic stress-response genes. Temperature is one of the most crucial abiotic factors defining the yield potential of temperate cereal crops, such as barley. The regulators of heat shock response (HSR), heat stress transcription factors (Hsfs), modulate the transcription level of heat-responsive genes to protect the plants from heat stress. In this study, an Hsf from wheat (TaHsfA6b) is overexpressed in barley for providing thermotolerance. Transgenic barley lines overexpressing TaHsfA6b showed improvement in thermotolerance. The constitutive overexpression of a TaHsfA6b gene upregulated the expression of major heat shock proteins and other abiotic stress-responsive genes. RNA-seq and qRT-PCR analysis confirmed the upregulation of Hsps, chaperonins, DNAJ, LEA protein genes, and genes related to anti-oxidative enzymes in transgenic lines. Excessive generation and accumulation of reactive oxygen species (ROS) occurred in wild-type (WT) plants during heat stress; however, the transgenic lines reflected improved ROS homeostasis mechanisms, showing lesser ROS accumulation under high temperature. No negative phenotypic changes were observed in overexpression lines. These results suggest that TaHsfA6b is a regulator of HSR and its overexpression altered the expression patterns of some main stress-related genes and enhanced the thermotolerance of this cereal crop. [ABSTRACT FROM AUTHOR]

Introduction: With 250 published cases worldwide, diffuse esophageal intramural pseudo-diverticulosis (DEIPD) is a poorly understood disease. The aim of this study was to determine the prevalence of DEIPD in our own population, identify risk factors and clinical symptoms, and characterize its typical endoscopic signs. Methods: Retrospective search in our center's endoscopic and clinical database. Reviewing of all cases by re-examining stored endoscopic photographs. Reviewing of all cases regarding age, sex, risk factors, comorbidities, histology, and clinical symptoms. Results: In a population of 150.000 we found 21 cases of DEIPD. Mean age was 56 ± 10 years. 86% were males, 76% had alcohol abuse, 57% had nicotine abuse, 38% had arteriosclerosis, 33% had COPD, 29% had malignancies, 24% had liver cirrhosis, 19% had impaired kidney function, and 15% had diabetes. Dysphagia was present in 62% and food bolus impaction (single or repeated) in 48%. Endoscopically, 95% of patients had multiple (> 4), small (0.25–2.5 mm) pseudodiverticle openings in the esophageal wall. In 62%, openings were aligned longitudinally. 86% showed edematous swelling of mucosa ("frosted glass look"), 76% showed a fine-grained pattern of small (10–100 µm) red dots ("faux uni pattern"), and 76% had a rigid, narrow lumen with multiple rings ("trachealization"). Conclusion: With a prevalence of approximately 5 to 50/100.000, DEIPD may be more frequent than previously estimated. It preferably affects middle-aged male alcoholics. Key symptoms are chronic dysphagia and food impaction. Typical endoscopic findings are multiple, small, longitudinally aligned pseudodiverticle openings, frosted glass look, faux uni pattern, and trachealization of the esophagus. [ABSTRACT FROM AUTHOR]

A silver reduced graphene oxide (Ag-rGO) nanocomposite paste was prepared for the assay of luteinizing hormone (LH) and follicle-stimulating hormone (FSH) in children's saliva. The paste was modified with a solution of myoglobin (Myb) to form the stochastic biosensor, to improve the sensitivity of the method. The Ag-rGO powder and Myb-Ag-rGO paste were morphologically and structurally characterized by SEM, TEM and XRD measurements. For the molecular recognition of the hormones, the biosensor based on Myb-Ag-rGO reached determination limits of 8.5 × 10−3 UI L−1 (2.0 × 10−12 g/mL) for luteinizing hormone and 1.4 × 10−2 UI L−1 (1.0 × 10−12 g/mL) for follicle-stimulating hormone. The determination of both hormones in saliva samples collected from children was done with high reliability. [ABSTRACT FROM AUTHOR]

Summary: The photoreceptor UVR8 mediates numerous photomorphogenic responses of plants to UV‐B wavelengths by regulating transcription. Studies with purified UVR8 and seedlings not previously exposed to UV‐B have generated a model for UVR8 action in which dimeric UVR8 rapidly monomerises in response to UV‐B exposure to initiate signalling. However, the mechanism of UVR8 action in UV‐B‐acclimated plants growing under photoperiodic conditions, where UVR8 exists in a dimer/monomer photo‐equilibrium, is poorly understood.We examined UVR8 dimer/monomer status, gene expression responses, amounts of key UVR8 signalling proteins and their interactions with UVR8 in UV‐B‐acclimated Arabidopsis.We show that in UV‐B‐acclimated plants UVR8 can mediate a response to a 15‐fold increase in UV‐B without any increase in abundance of UVR8 monomer. Following transfer to elevated UV‐B, monomers show increased interaction with both COP1, to initiate signalling and RUP2, to maintain the photo‐equilibrium when the dimer/monomer cycling rate increases. Native RUP1 is present in low abundance compared with RUP2.We present a model for UVR8 action in UV‐B‐acclimated plants growing in photoperiodic conditions that incorporates dimer and monomer photoreception, dimer/monomer cycling, abundance of native COP1 and RUP proteins, and interactions of the monomer population with COP1, RUP2 and potentially other proteins. [ABSTRACT FROM AUTHOR]

Sun-loving plants perceive the proximity of potential light-competing neighboring plants as a reduction in the red:far-red ratio (R:FR), which elicits a suite of responses called the "shade avoidance syndrome" (SAS). Changes in R:FR are primarily perceived by phytochrome B (phyB), whereas UV-B perceived by UV RESISTANCE LOCUS 8 (UVR8) elicits opposing responses to provide a counterbalance to SAS, including reduced shade-induced hypocotyl and petiole elongation. Here we show at the genome-wide level that UVR8 broadly suppresses shade-induced gene expression. A subset of this gene regulation is dependent on the UVR8-stabilized atypical bHLH transcription regulator LONG HYPOCOTYL IN FAR-RED 1 (HFR1), which functions in part redundantly with PHYTOCHROME INTERACTING FACTOR 3-LIKE 1 (PIL1). In parallel, UVR8 signaling decreases protein levels of the key positive regulators of SAS, namely the bHLH transcription factors PHYTOCHROME INTERACTING FACTOR 4 (PIF4) and PIF5, in a COP1-dependent but HFR1-independent manner. We propose that UV-B antagonizes SAS via two mechanisms: degradation of PIF4 and PIF5, and HFR1- and PIL1-mediated inhibition of PIF4 and PIF5 function. This work highlights the importance of typical and atypical bHLH transcription regulators for the integration of light signals from different photoreceptors and provides further mechanistic insight into the crosstalk of UVR8 signaling and SAS. Author summary: Sunlight provides the energy that powers photosynthesis and is thus of the utmost importance for plant growth and development. Plants grow in constantly changing environments, including highly variable light conditions. They have evolved specific light sensors (photoreceptors) that allow optimization of photosynthesis and survival, and adjusting growth and development to the prevailing environment. An intriguing example is the perception of competitors due to changes in the light transmitted and reflected by their leaves. As red light, but not far-red, is strongly absorbed by photosynthetic pigments, the red:far-red ratio (R:FR) is strongly reduced in the presence of competitors which is sensed by the phytochrome red/far-red photoreceptors. Detection of competitors results in stem elongation in shade-intolerant plants to overtop the neighbors and reach full sunlight (shade avoidance syndrome). UV-B sensed by the UVR8 photoreceptor inhibits shade avoidance by reducing the abundance and activity of specific transcriptional regulators PIF4 and PIF5. We have discovered an important role for an atypical transcriptional regulator HFR1 that is stabilized under UV-B, strongly contributing to the UVR8 photoreceptor-mediated repression of shade responses by counteracting PIF4 and PIF5 activities. This contributes significantly to a deeper mechanistic understanding of how plants integrate information from a complex light environment. [ABSTRACT FROM AUTHOR]

Preserving crop yield is critical for US soybean production and the global economy. Crop species have been selected for increased yield for thousands of years with individual lines selected for improved performance in unique environments, constraints not experienced by model species such as Arabidopsis. This selection likely resulted in novel stress adaptations, unique to crop species. Given that iron deficiency is a perennial problem in the soybean growing regions of the USA and phosphate deficiency looms as a limitation to global agricultural production, nutrient stress studies in crop species are critically important. In this study, we directly compared whole-genome expression responses of leaves and roots to iron (Fe) and phosphate (Pi) deficiency, representing a micronutrient and macronutrient, respectively. Conducting experiments side by side, we observed soybean responds to both nutrient deficiencies within 24 h. While soybean responds largely to –Fe deficiency, it responds strongly to Pi resupply. Though the timing of the responses was different, both nutrient stress signals used the same molecular pathways. Our study is the first to demonstrate the speed and diversity of the soybean stress response to multiple nutrient deficiencies. We also designed the study to examine gene expression changes in response to multiple stress events. We identified 865 and 3375 genes that either altered their direction of expression after a second stress exposure or were only differentially expressed after a second stress event. Understanding the molecular underpinnings of these responses in crop species could have major implications for improving stress tolerance and preserving yield. [ABSTRACT FROM AUTHOR]

Biological soil crusts (biocrusts) play an important role in improving soil stability and resistance to erosion by promoting aggregation of soil particles. During initial development, biocrusts are dominated by bacteria. Some bacterial members of the biocrusts can contribute to the formation of soil aggregates by producing exopolysaccharides and lipopolysaccharides that act as "glue" for soil particles. However, little is known about the dynamics of "soil glue" producers during the initial development of biocrusts. We hypothesized that different types of initial biocrusts harbor distinct producers of adhesive polysaccharides. To investigate this, we performed a microcosm experiment, cultivating biocrusts on two soil substrates. High-throughput shotgun sequencing was used to obtain metagenomic information on microbiomes of bulk soils from the beginning of the experiment, and biocrusts sampled after 4 and 10 months of incubation. We discovered that the relative abundance of genes involved in the biosynthesis of exopolysaccharides and lipopolysaccharides increased in biocrusts compared with bulk soils. At the same time, communities of potential "soil glue" producers that were highly similar in bulk soils underwent differentiation once biocrusts started to develop. In the bulk soils, the investigated genes were harbored mainly by Betaproteobacteria, whereas in the biocrusts, the major potential producers of adhesive polysaccharides were, aside from Alphaproteobacteria, either Cyanobacteria or Chloroflexi and Acidobacteria. Overall, our results indicate that the potential to form exopolysaccharides and lipopolysaccharides is an important bacterial trait for initial biocrusts and is maintained despite the shifts in bacterial community composition during biocrust development. [ABSTRACT FROM AUTHOR]

Insect herbivores have the potential to change both physical and chemical traits of their host plant. Although the impacts of herbivores on their hosts have been widely studied, experiments assessing changes in multiple leaf traits or functions simultaneously are still rare. We experimentally tested whether herbivory by winter moth (Operophtera brumata) caterpillars and mechanical leaf wounding changed leaf mass per area, leaf area, leaf carbon and nitrogen content, and the concentrations of 27 polyphenol compounds on oak (Quercus robur) leaves. To investigate how potential changes in the studied traits affect leaf functioning, we related the traits to the rates of leaf photosynthesis and respiration. Overall, we did not detect any clear effects of herbivory or mechanical leaf damage on the chemical or physical leaf traits, despite clear effect of herbivory on photosynthesis. Rather, the trait variation was primarily driven by variation between individual trees. Only leaf nitrogen content and a subset of the studied polyphenol compounds correlated with photosynthesis and leaf respiration. Our results suggest that in our study system, abiotic conditions related to the growth location, variation between tree individuals, and seasonal trends in plant physiology are more important than herbivory in determining the distribution and composition of leaf chemical and structural traits. [ABSTRACT FROM AUTHOR]

The aim of the present work was to investigate and compare the content of phenolic compounds in four taxa of Erigeron acris L. s. l.: E. acris (EAA), E. acris subsp. droebachiensis (O.F. Müll.) Arcang. (EAD), E. acris subsp. serotinus (Weihe) Greuter (EAS) and E. ×huelsenii Vatke (EH), a hybrid between E. acris and E. canadensis L. The total flavonoid content was determined by Christ-Müller method and the total phenolic acid content was determined by the method utilizing Arnov's reagent. The method using ultra high performance liquid chromatography with photodiode array detection (UHPLC-PDA) was applied for the separation, identification and quantification of nine phenolic compounds (protocatechuic acid, chlorogenic acid, caffeic acid, 6′-O-caffeoylerigeroside, scutellarein-7-O-β-D-glucuronide, quercetin 3-O-glucoside, 4,5-dicaffeoylquinic acid, quercetin and luteolin) in the aerial parts of E. acris s. l. The chromatographic separation was carried out using a BEH C18 column packed with 1.7-μm particles and gradient elution with a mobile phase of water and methanol, both containing 0.02% (v/v) trifluoroacetic acid. The four investigated taxa of E. acris s. l. differed in the composition and the content of phenolic compounds. The main substances determined in the methanolic herbal extracts were: scutellarein-7-O-β-D-glucuronide (EAA, EAS, EAD and EH), 6′-O-caffeoylerigeroside (EAA, EAD and EH) and chlorogenic acid (EAS and EH). Moreover, the results indicated that five of the nine tested compounds were found in all investigated extracts from herbs of E. acris s. l. Two of them (6′-O-caffeoylerigeroside and scutellarein-7-O-β-D-glucuronide) could be selected as potential chemotaxonomic markers of the genus Erigeron L. [ABSTRACT FROM AUTHOR]

It is vitally important to guide or navigate therapeutic proceedings with a direct and visual approach in order to carefully undertake precision medical manipulations and efficiently evaluate the treatments. Imaging-navigated surgery is one of the common and prevailing technologies to realize this target, and more importantly it merges visualized medicine into next-generation theranostic paradigms in modern medicine. Endoscopes, surgical robots, and nanorobots are three major domains in terms of imaging-navigated surgery. The history of endoscopy has seen upgraded developments since the early 1800s. In contrast, surgical robots have been widely used and investigated in recent years, and they came into clinical uses only in the past decades. Nanorobots which closely depend on innovated and multifunctional biomaterials are still in their infancy. All these imaging-navigated technologies show similar and apparent advantages such as minimal invasiveness, minimized pain, positive prognosis, and relatively expected recovery, which have greatly improved surgery efficiency and patients' life quality. Therefore, the imaging-navigated surgery will be discussed in this chapter, and advanced clinical and preclinical medical applications will also be demonstrated for a diverse readers and comprehensive understanding., (© 2023. Springer Nature Singapore Pte Ltd.)

Ultraviolet-B (UV-B) radiation is an elicitor of secondary metabolites in plant tissue culture, but the effects on 20-hydroxyecdysone (20E) are still unclear. The 20E may show biotechnological, pharmacological, medical, and agrochemical applicability. Here, we use Pfaffia glomerata, a medically important species, to understand the impacts of UV-B radiation on their physiological performance, the expression of key genes involved in the 20E biosynthesis, and the 20E content. Two accessions (A22 and A43) of plants 20 days old grown in vitro were exposed to 0 (control), 2 (6.84 kJ m−2), and 4 (13.84 kJ m−2) h UV-B radiation for 20 consecutive days. Our data showed that UV-B reduced glucose concentration in A22 and A43 under 4 h of exposure (29 and 30%, respectively), while sucrose concentration increased (32 and 57%, respectively). UV-B also differentially impacted the accessions (A22 and A43), where the A22 under 4 h of UV-B had reduced total dry weight (8%) and electron transport rate (31%); in contrast, A43 did not change. Also, only A22 had increased POD activity under 4 h of UV-B (66%), as well as increased gene expression of the 20E pathway and the 20E content under 2 and 4 h of UV-B in leaves (28 and 21%, respectively) and roots (16 and 13%, respectively). This differential performance to UV-B can be explained by the contrasting anthocyanin contents. Notably, A43 displayed 56% more anthocyanin to the former, a possible defense against UV-B. In conclusion, UV-B radiation is a potential elicitor for increasing 20E content in P. glomerata grown in vitro. [ABSTRACT FROM AUTHOR]

Cryptochromes (CRYs) and UV RESISTANCE LOCUS 8 (UVR8) photoreceptors perceive UV-A/blue (315–500 nm) and UV-B (280–315 nm) radiation in plants, respectively. While the roles of CRYs and UVR8 have been studied in separate controlled-environment experiments, little is known about the interaction between these photoreceptors. Here, Arabidopsis wild-type L er , CRYs and UVR8 photoreceptor mutants (uvr8-2 , cry1cry2 and cry1cry2uvr8-2), and a flavonoid biosynthesis-defective mutant (tt4) were grown in a sun simulator. Plants were exposed to filtered radiation for 17 d or for 6 h, to study the effects of blue, UV-A, and UV-B radiation. Both CRYs and UVR8 independently enabled growth and survival of plants under solar levels of UV, while their joint absence was lethal under UV-B. CRYs mediated gene expression under blue light. UVR8 mediated gene expression under UV-B radiation, and in the absence of CRYs, also under UV-A. This negative regulation of UVR8-mediated gene expression by CRYs was also observed for UV-B. The accumulation of flavonoids was also consistent with this interaction between CRYs and UVR8. In conclusion, we provide evidence for an antagonistic interaction between CRYs and UVR8 and a role of UVR8 in UV-A perception. [ABSTRACT FROM AUTHOR]

Meiotic recombination generates genetic diversity upon which selection can act. Recombination rates are highly variable between species, populations, individuals, sexes, chromosomes, and chromosomal regions. The underlying mechanisms are controlled at the genetic and epigenetic level and show plasticity toward the environment. Environmental plasticity may be divided into short- and long-term responses. We estimated recombination rates in natural populations of wild barley and domesticated landraces using a population genetics approach. We analyzed recombination landscapes in wild barley and domesticated landraces at high resolution. In wild barley, high recombination rates are found in more interstitial chromosome regions in contrast to distal chromosome regions in domesticated barley. Among subpopulations of wild barley, natural variation in effective recombination rate is correlated with temperature, isothermality, and solar radiation in a nonlinear manner. A positive linear correlation was found between effective recombination rate and annual precipitation. We discuss our findings with respect to how the environment might shape effective recombination rates in natural populations. Higher recombination rates in wild barley populations subjected to specific environmental conditions could be a means to maintain fitness in a strictly inbreeding species. [ABSTRACT FROM AUTHOR]

The SPORULATION 11 (SPO11) proteins are among eukaryotic the topoisomerase VIA (Topo VIA) homologs involved in modulating various important biological processes, such as growth, development and stress response via endoreduplication in plants, but the underlying mechanism response to stress remains largely unknown under salt treatment. Here, we attempted to characterize a homolog of TOP VIA in upland cotton (Gossypium hirsutum L.), designated as GhSPO11‐3. The silencing of GhSPO11‐3 in cotton plants resulted in a dwarf phenotype with a failure of cell endoreduplication and a phase shift in the ploidy levels. The GhSPO11‐3‐silenced plants also showed substantial changes including accumulated malondialdehyde, significantly reduced chlorophyll and proline contents and decreased antioxidative enzyme activity after salt treatment. In addition, transgenic Arabidopsis lines overexpressing GhSPO11‐3 accelerated both leaf and root growth with cell expansion and endopolyploidy. Both leaf stomatal density and aperture were markedly decreased, and the transgenic Arabidopsis lines were more tolerant with expression of stress‐responsive genes under salinity stress. Furthermore, consistent with the reduced reactive oxygen species (ROS), the expression of ROS scavenging‐related genes was largely reinforced, and antioxidant enzyme activities were accordingly significantly enhanced in transgenic Arabidopsis lines under salt stress. In general, these results indicated that GhSPO11‐3 likely respond to salt stress by positively regulating root growth, stomatal response, ROS production and the expression of stress‐related genes to cope with adverse conditions in plants. [ABSTRACT FROM AUTHOR]

In this study, polyploidy level was determined by flow cytometry analysis. The effect of polyploidy by colchicine treatment was examined on the growth parameters, malondealdehyde (MDA), as well as activities of antioxidant enzymes such as superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD) in response to different levels of salinity in Dunaliella salina. The results of algal growth indicated that 3 M NaCl was the optimal concentration of salt, since the highest enhancement in fresh and dry weight, chlorophyll and carotenoids, soluble sugar, glycerol, protein and starch content was observed in comparison to other concentrations. The amount of these metabolites declined in the concentrations under optimum salinity. The least and highest amounts of MDA were observed at 1 and 4 M NaCl respectively. Polyploidy in optimum concentration of salt, caused further increment of the above growth parameters. In relation to this, in most cases, treatment of 0.1% colchicine was most effective. The beneficial effects of polyploidy in non-optimal conditions were also found in some parameters such as biomass, chlorophyll, carotenoids, proteins and starch. Furthermore, the activity of antioxidant enzymes CAT, SOD and POD showed a positive significant correlation with salt stress and these were maximized at 4 M NaCl. Polyploidy (especially colchicine 0.1%) affected activity of these antioxidant enzymes in some concentrations of salt. Overall, our results suggest that the microalgae has significantly different responses to salt stress based on ploidy levels. [ABSTRACT FROM AUTHOR]

Main conclusion: The physiological importance of MpUVR8 in UV-B resistance and translocation in a UV-B-dependent manner from the cytosol into the nucleus is characterized in Marchantia polymorpha. UV RESISTANCE LOCUS 8 (UVR8) is an ultraviolet-B (UV-B) light receptor functioning for UV-B sensing and tolerance in Arabidopsis thaliana and other species. It is unclear whether UVR8 physiologically functions in UV-B-induced defense responses in Marchantia polymorpha, which belongs to the earliest diverging group of embryophyte lineages. Here, we demonstrate that UVR8 has a physiological function in UV-B tolerance and that there is a UVR8-dependent pathway involved. In addition, a UVR8-independent pathway is revealed. We examine the tissue-specific expression pattern of M. polymorpha UVR8 (MpUVR8), showing that it is highly expressed in the apical notch in thalli and gametangiophores, as well as in antheridial and archegonial heads. Furthermore, Mpuvr8KO plant transformants, in which the MpUVR8 locus was disrupted, were produced and analyzed to understand the physiological and molecular function of MpUVR8. Analysis using these plants indicates the important roles of MpUVR8 and MpUVR8-regulated genes, and of MpUVR8-independent pathways in UV-B tolerance. Subcellular localization of Citrine-fused MpUVR8 in M. polymorpha cells was also investigated. It was found to translocate from the cytosol into the nucleus in response to UV-B irradiation. Our findings indicate strong conservation of the physiological function of UVR8 and the molecular mechanisms for UVR8-dependent signal transduction through regulation of gene expression in embryophytes. [ABSTRACT FROM AUTHOR]

Summary: Double‐stranded breaks can be repaired by different mechanisms such as homologous recombination (HR), classical nonhomologous end joining (C‐NHEJ) and alternative end joining (Alt‐EJ). Polymerase Q (POLQ) has been proposed to be the main factor involved in Alt‐EJ‐mediated DNA repair.Here we describe the role of POLQ in DNA repair and gene targeting in Physcomitrella patens. The disruption of the POLQ gene does not influence the genetic stability of P. patens nor its development.The polq mutant shows the same sensitivity as wild‐type towards most of the genotoxic agents tested (ultraviolet (UV), methyl methanesulfonate (MMS) and cisplatin) with the notable exception of bleomycin for which it shows less sensitivity than the wild‐type. Furthermore, we show that POLQ is involved in the repair of CRISPR‐Cas9‐induced double‐stranded breaks in P. patens. We also demonstrate that POLQ is a potential competitor and/or inhibitor of the HR repair pathway.This finding has a consequence in terms of genetic engineering, as in the absence of POLQ the frequency of gene targeting is significantly increased and the number of clean two‐sided HR‐mediated insertions is enhanced. Therefore, the control of POLQ activity in plants could be a useful strategy to optimize the tools of genome engineering for plant breeding. [ABSTRACT FROM AUTHOR]

Extremely thin, Al–Zn–O composite films (21 ± 6 nm) are deposited on fused silica substrates under various percentages of oxygen in the oxygen/argon gas mixture (3%, 4.5%, 6%, and 7.5%). The films are prepared by a cylindrical DC magnetron sputtering system, utilizing a single compound target. The effects of the oxygen percentage on the compositional, morphological, and optical properties of the films are investigated by energy‐dispersive X‐ray spectroscopy, scanning electron microscopy, UV‐visible spectrophotometry, and atomic force microscopy. The chemical composition of the films is Al1 Zn1+X O with 0.2 < X < 1. The average visible transmittance of 93.6% with a high level of uniformity is obtained when the sputtering deposition performs under the oxygen percentage of 6%. It is found that the optical band gap of the films can be tailored toward higher energy by increasing oxygen percentage; however, the adjustable range is not so significant. The results offer cost‐efficient films with high, uniform transmittance in the visible region and with an ability to attenuate more than 10% of incident UV‐B radiation (280‐315 nm). This type of films can potentially be included in greenhouse screen systems to effectively protect the plants from the elevated UV‐B radiation without altering natural conditions. The greenhouses including the Al‐Zn‐O ceramic coatings in the design of their screen systems effectively protect the plants from the elevated UV‐B radiation caused by man‐made ozone layer depletion. [ABSTRACT FROM AUTHOR]

Main conclusion: Cotton GaTOP6B is involved in cellular endoreduplication and a positive response to drought stress via promoting plant leaf and root growth.Drought is deemed as one of adverse conditions that could cause substantial reductions in crop yields worldwide. Since cotton exhibits a moderate-tolerant phenotype under water-deficit conditions, the plant could therefore be used to characterize potential new genes regulating drought tolerance in crop plants. In this work, GaTOP6B, encoding DNA topoisomerase VI subunit B, was identified in Asian cotton (Gossypium arboreum). Virus-induced gene silencing (VIGS) and overexpression (OE) were used to investigate the biological function of GaTOP6B in G. arboreum and Arabidopsis thaliana under drought stress. The GaTOP6B-silencing plants showed a reduced ploidy level, and displayed a compromised tolerance phenotype including lowered relative water content (RWC), decreased proline content and antioxidative enzyme activity, and an increased malondialdehyde (MDA) content under drought stress. GaTOP6B-overexpressing Arabidopsis lines, however, had increased ploidy levels, and were more tolerant to drought treatment, associated with improved RWC maintenance, higher proline accumulation, and reduced stomatal aperture under drought stress. Transcriptome analysis showed that genes involved in the processes like cell cycle, transcription and signal transduction, were substantially up-regulated in GaTOP6B-overexpressing Arabidopsis, promoting plant growth and development. More specifically, under drought stress, the genes involved in the biosynthesis of secondary metabolites such as phenylpropanoid, starch and sucrose were selectively enhanced to improve tolerance in plants. Taken together, the results demonstrated that GaTOP6B could coordinately regulate plant leaf and root growth via cellular endoreduplication, and positively respond to drought stress. Thus, GaTOP6B could be a competent candidate gene for improvement of drought tolerance in crop species. [ABSTRACT FROM AUTHOR]

When first asked to write a review of my life as a scientist, I doubted anyone would be interested in reading it. In addition, I did not really want to compose my own memorial. However, after discussing the idea with other scientists who have written autobiographies, I realized that it might be fun to dig into my past and to reflect on what has been important for me, my life, my family, my friends and colleagues, and my career. My life and research has taken me from bacteriophage to Agrobacterium tumefaciens–mediated DNA transfer to plants to the plant genome and its environmentally induced changes. I went from being a naïve, young student to a postdoc and married mother of two to the leader of an ever-changing group of fantastic coworkers—a journey made rich by many interesting scientific milestones, fascinating exploration of all corners of the world, and marvelous friendships. [ABSTRACT FROM AUTHOR]

We studied how plants acclimated to growing conditions that included combinations of blue light (BL) and ultraviolet (UV)‐A radiation, and whether their growing environment affected their photosynthetic capacity during and after a brief period of acute high light (as might happen during an under‐canopy sunfleck). Arabidopsis thaliana Landsberg erecta wild‐type were compared with mutants lacking functional blue light and UV photoreceptors: phototropin 1, cryptochromes (CRY1 and CRY2) and UV RESISTANT LOCUS 8 (uvr8). This was achieved using light‐emitting‐diode (LED) lamps in a controlled environment to create treatments with or without BL, in a split‐plot design with or without UV‐A radiation. We compared the accumulation of phenolic compounds under growth conditions and after exposure to 30 min of high light at the end of the experiment (46 days), and likewise measured the operational efficiency of photosystem II (ϕPSII, a proxy for photosynthetic performance) and dark‐adapted maximum quantum yield (Fv/Fm to assess PSII damage). Our results indicate that cryptochromes are the main photoreceptors regulating phenolic compound accumulation in response to BL and UV‐A radiation, and a lack of functional cryptochromes impairs photosynthetic performance under high light. Our findings also reveal a role for UVR8 in accumulating flavonoids in response to a low UV‐A dose. Interestingly, phototropin 1 partially mediated constitutive accumulation of phenolic compounds in the absence of BL. Low‐irradiance BL and UV‐A did not improve ϕPSII and Fv/Fm upon our acute high‐light treatment; however, CRYs played an important role in ameliorating high‐light stress. [ABSTRACT FROM AUTHOR]

COP1 is a highly conserved ubiquitin ligase that regulates diverse cellular processes in plants and metazoans. Tribbles pseudokinases, which only exist in metazoans, act as scaffolds that interact with COP1 and its substrates to facilitate ubiquitination. Here, we report that, in addition to this scaffolding role, TRIB1 promotes nuclear localization of COP1 by disrupting an intramolecular interaction between the WD40 domain and a previously uncharacterized regulatory site within COP1. This site, which we have termed the pseudosubstrate latch (PSL), resembles the consensus COP1‐binding motif present in known COP1 substrates. Our findings support a model in which binding of the PSL to the WD40 domain stabilizes a conformation of COP1 that is conducive to CRM1‐mediated nuclear export, and TRIB1 displaces this intramolecular interaction to induce nuclear retention of COP1. Coevolution of Tribbles and the PSL in metazoans further underscores the importance of this role of Tribbles in regulating COP1 function. Synopsis: COP1 is a highly conserved E3 ubiquitin ligase that shuttles between the nucleus and cytoplasm. In plants, COP1 localization is controlled by light, while in metazoans, the pseudokinase TRIB1 promotes COP1 nuclear localization by competing with an intramolecular site that regulates CRM1‐mediated nuclear export of COP1. Binding of the TRIB1 C‐terminal tail to the COP1 WD40 domain potentiates COP1 nuclear localization.COP1 nucleocytoplasmic shuttling is controlled by an intramolecular site, termed the pseudosubstrate latch (PSL), that competes with TRIB1 for binding to the WD40 domain.Disruption of the PSL/WD40 interaction through mutations or TRIB1 binding interferes with CRM1‐mediated nuclear export of COP1.Phylogenetic analysis indicates that the COP1‐binding motifs in the TRIB1 tail and COP1 PSL coevolved in metazoan species. Localization of the conserved ubiquitin ligase COP1, known to be light‐controlled in plants, depends on regulated disruption of an intramolecular pseudo‐substrate interaction in metazoans. [ABSTRACT FROM AUTHOR]

A soil column experiment was conducted to examine the effects of fertilizer N source and depth of placement on soil profile N2O accumulation and surface emissions at 44% and 77% water-filled pore space (WFPS). The used N fertilizers were polymer-coated urea, stabilized urea with urease and nitrification inhibitors, and conventional granular urea. Conventional urea and stabilized urea were applied either uniformly at 0-65 cm or deeply at a 40- to 65-cm depth of 65 cm repacked soil columns, whereas polymer-coated urea was subsurface banded at a 10-cm depth to reflect fertilizer application practices at a field scale. Profile N2O concentrations at 5, 15, 30, and 60 cm and surface flux were monitored over 3 months. Compared to conventional urea, stabilized urea and polymer-coated urea generally reduced N2O accumulation in the column, but not cumulative emissions. Across fertilizer sources, compared with uniform addition, deep placement reduced column N2O accumulation at 44% but not at 77% WFPS. Deep placement also reduced emissions 56-71% than for uniform placement. Column N2O accumulation doubled at 77% than 44% WFPS, whereas cumulative emissions and applied N-based emission factors were lower at the former WFPS value. Cumulative N2O emissions increased exponentially with total accumulation at 44% but not 77% WFPS. Reduced N2O emissions at high WFPS were likely due to consumption and low diffusivity of the gas in the soil profile, rather than low production by denitrification. These results suggest fertilizer N leached down the profile is less prone to N2O loss while emission reductions by using more efficient fertilizers may be limited. [ABSTRACT FROM AUTHOR]

ContentsSummary1247I.Introduction1247II.The UVR8–COP1 pathway1248III.The UVR8–WRKY36 pathway1248IV.The UVR8–BES1/BIM1 pathway1249V.Other pathways1250VI.Conclusion and perspectives1250Acknowledgements1251References1251 Summary: Ultraviolet‐B (UV‐B) light is an intrinsic part of sunlight that has significant effects on plant development and acclimation responses. UVR8 (UV Resistance Locus 8) is the long sought‐after UV‐B photoreceptor that mediates UV‐B light perception and signal transduction. UV‐B irradiation induces the monomerization and nuclear accumulation of UVR8 in plant cells to activate the UV‐B signaling pathway. The photoactivated UVR8 could transduce UV‐B signal via multiple mechanisms to regulate transcription and plant growth. Here, we summarize current understanding of UVR8‐mediated UV‐B signal transduction pathways, including UVR8–COP1 (CONSTITUTIVELY PHOTOMORPHOGENIC 1) and UVR8–WRKY36 (WRKY DNA‐BINDING PROTEIN 36), UVR8–BES1 (BRI1‐EMS‐SUPPRESSOR1) and BIM1 (BES1‐INTERACTING MYC‐LIKE 1). [ABSTRACT FROM AUTHOR]

BACKGROUND: Antagonistic yeast and hot air treatment are two promising methods for conferring resistance to pathogenic fungi. The study assessed the effectiveness of hot‐air treatment (45 °C, 4 h) and antagonistic yeast (Pichia guilliermondii at 108 CFU mL−1) alone or in combination on the two major postharvest diseases (Rhizopus stolonifer and Penicillium expansum), as well as the quality and antioxidant parameters in harvested peaches. RESULTS: The combination of hot‐air treatment and Pichia guilliermondii had notable inhibitory effects on infections in peach fruit wounds. In addition, the individual hot‐air treatment or Pichia guilliermondii could improve quality indexes to varying degrees, but the combination of the above two treatments could achieve the highest efficacy. Furthermore, compared with other groups, the combined treatment induced the highest activities of superoxide dismutase and catalase, improved the content of total phenolics and reduced glutathione most obviously. Lastly, the most significant reductions in malondialdehyde content and relative electrical conductivity were observed in the combination‐treated fruit. CONCLUSIONS: The combined treatment could control fungal diseases, besides delay the decline of quality and antioxidant parameters, so as to achieve the purpose of fresh keeping for harvested peach fruit. © 2018 Society of Chemical Industry [ABSTRACT FROM AUTHOR]