897 results on '"Sadik C"'
Search Results
52. AB0166 IMMUNOGLOBULIN G DERIVED FROM PATIENTS WITH SYSTEMIC SCLEROSIS IMPRINTS A PRO-INFLAMMATORY AND PRO-FIBROTIC PHENOTYPE IN MONOCYTE-LIKE THP-1 CELLS
- Author
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Dalmann, A., primary, Murthy, S., additional, Wannick, M., additional, Eleftheriadis, G., additional, Müller, A., additional, Zillikens, D., additional, Busch, H., additional, Sadik, C., additional, and Riemekasten, G., additional
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- 2020
- Full Text
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53. Diagnostik und Therapie des Anti-p200-Pemphigoids
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Holtsche, M. M., additional, Zillikens, D., additional, and Sadik, C. D., additional
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- 2020
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54. Klinik für Dermatologie, Allergologie und Venerologie der Universität zu Lübeck: Interaktion von Forschung und klinischer Versorgung
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Anemüller, W., additional, Busch, H., additional, Fleischer, M., additional, Hundt, J. E., additional, Ibrahim, S., additional, Kahle, B., additional, Ludwig, R. J., additional, Recke, A., additional, Recke, A. L., additional, Rose, E., additional, Sadik, C. D., additional, Schmidt, E., additional, Schumacher, N., additional, Thaçi, D., additional, Terheyden, P., additional, Wolff, H. H., additional, and Zillikens, D., additional
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- 2020
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55. Optomechanical design and characterization of a printed-circuit-board-based free-space optical interconnect package
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Zheng, Xuezhe, Marchand, Philippe J., Huang, Dawei, Kibar, Osman, Ozkan, Nur S.E., and Esener, Sadik C.
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Electronic packaging -- Research ,Optoelectronic devices -- Research ,Photomechanical processes -- Research ,Astronomy ,Physics - Abstract
We present a proof of concept and a feasibility demonstration of a practical packaging approach in which flee-space optical interconnects (FSOI's) can be integrated simply on electronic multichip modules (MCM's) for intra-MCM-board interconnects. Our system-level packaging architecture is based on a modified folded 4f imaging system that has been implemented with only off-the-shelf optics, conventional electronic packaging, and passive-assembly techniques to yield a potentially low-cost and manufacturable packaging solution. The prototypical system as built supports 48 independent FSOI channels with 8 separate laser and detector chips, for which each chip consists of a one-dimensional array of 12 devices. All the chips are assembled on a single substrate that consists of a printed circuit board or a ceramic MCM. Optical link channel efficiencies of greater than 90% and interchannel cross talk of less than -20 dB at low frequency have been measured. The system is compact at only 10 [in.sup.3] (25.4 [cm.sup.3]) and is scalable, as it can easily accommodate additional chips as well as two-dimensional optoelectronic device arrays for increased interconnection density.
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- 1999
56. Removal of ligand-bound liposomes from cell surfaces by microbubbles exposed to ultrasound
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Ruben Mora, Viviana Serra, Stuart Ibsen, Sadik C. Esener, Michael Benchimol, Guixin Shi, Wenjin Cui, and Carolyn E. Schutt
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Surface Properties ,Static Electricity ,Cell ,Biophysics ,02 engineering and technology ,Ligands ,01 natural sciences ,Cell membrane ,0103 physical sciences ,Cell Adhesion ,Human Umbilical Vein Endothelial Cells ,medicine ,Humans ,010301 acoustics ,Molecular Biology ,Original Paper ,αvβ3 integrin ,Liposome ,Microbubbles ,business.industry ,Chemistry ,Ultrasound ,Cell Biology ,021001 nanoscience & nanotechnology ,Ligand (biochemistry) ,Fluid shear ,Atomic and Molecular Physics, and Optics ,medicine.anatomical_structure ,Ultrasonic Waves ,Liposomes ,0210 nano-technology ,business - Abstract
Gas-filled microbubbles attached to cell surfaces can interact with focused ultrasound to create microstreaming of nearby fluid. We directly observed the ultrasound/microbubble interaction and documented that under certain conditions fluorescent particles that were attached to the surface of live cells could be removed. Fluorescently labeled liposomes that were larger than 500 nm in diameter were attached to the surface of endothelial cells using cRGD targeting to αvβ3 integrin. Microbubbles were attached to the surface of the cells through electrostatic interactions. Images taken before and after the ultrasound exposure were compared to document the effects on the liposomes. When exposed to ultrasound with peak negative pressure of 0.8 MPa, single microbubbles and groups of isolated microbubbles were observed to remove targeted liposomes from the cell surface. Liposomes were removed from a region on the cell surface that averaged 33.1 μm in diameter. The maximum distance between a single microbubble and a detached liposome was 34.5 μm. Single microbubbles were shown to be able to remove liposomes from over half the surface of a cell. The distance over which liposomes were removed was significantly dependent on the resting diameter of the microbubble. Clusters of adjoining microbubbles were not seen to remove liposomes. These observations demonstrate that the fluid shear forces generated by the ultrasound/microbubble interaction can remove liposomes from the surfaces of cells over distances that are greater than the diameter of the microbubble.
- Published
- 2017
57. A Comparative Study of Receptor-Targeted Magnetosome and HSA-Coated Iron Oxide Nanoparticles as MRI Contrast-Enhancing Agent in Animal Cancer Model
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Laura E. Ruff, Damla Bozkurt, Öznur Akbal, Murat Demirbilek, Yasan Yeh, Yasin Senel, Berrak Gumuskaya, Şeyda Çolak, Ahmet Çabuk, Emir Baki Denkbaş, Oktay Algin, Sadik C. Esener, Ebru Erdal, [Erdal, Ebru] Aksaray Univ, Dept Biol, Aksaray, Turkey -- [Demirbilek, Murat] Hacettepe Univ, Adv Technol Applicat & Res Ctr, Ankara, Turkey -- [Yeh, Yasan] Univ Calif San Diego, Dept Bioengn, La Jolla, CA 92093 USA -- [Akbal, Oznur] Gazi Univ, Polatli Art & Sci Fac, Dept Biol, Ankara, Turkey -- [Ruff, Laura -- Esener, Sadik] Univ Calif San Diego, Moores Canc Ctr, La Jolla, CA 92093 USA -- [Bozkurt, Damla -- Cabuk, Ahmet] Osmangazi Univ, Dept Biol, Eskisehir, Turkey -- [Cabuk, Ahmet] Osmangazi Univ, Biotechnol & Biosafety Div Dept, Eskisehir, Turkey -- [Senel, Yasin] Ankara Univ, Vet Internal Med Div, Ankara, Turkey -- [Gumuskaya, Berrak] Yildirim Beyazit Univ, Ataturk Educ & Res Hosp, Dept Patol, Ankara, Turkey -- [Algin, Oktay] Yildirim Beyazit Univ, Ataturk Educ & Res Hosp, Dept Radiol, Ankara, Turkey -- [Colak, Seyda] Hacettepe Univ, Dept Engn Phys, TR-06800 Ankara, Turkey -- [Esener, Sadik] Univ Calif San Diego, Dept Elect & Comp Engn, La Jolla, CA 92093 USA -- [Denkbas, Emir B.] Hacettepe Univ, Div Biochem, Dept Chem, Ankara, Turkey, Gumuskaya, Berrak -- 0000-0003-0599-8968, and Sabire Yazıcı Fen-Edebiyat Fakültesi
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Male ,0301 basic medicine ,Magnetotactic bacteria ,Magnetosome ,Contrast Media ,Nanoparticle ,Breast Neoplasms ,Serum Albumin, Human ,Bioengineering ,02 engineering and technology ,Applied Microbiology and Biotechnology ,Biochemistry ,Mice ,Iron oxide nanoparticles ,03 medical and health sciences ,chemistry.chemical_compound ,Magnetic resonance imaging ,Breast cancer ,Coated Materials, Biocompatible ,In vivo ,Cell Line, Tumor ,Fluorescence microscope ,Animals ,Humans ,MTT assay ,Magnetospirillum ,Magnetite Nanoparticles ,Molecular Biology ,Mice, Inbred BALB C ,Human serum albumin (HSA) ,General Medicine ,021001 nanoscience & nanotechnology ,030104 developmental biology ,chemistry ,Biophysics ,Heterografts ,Female ,Magnetosomes ,0210 nano-technology ,Neoplasm Transplantation ,Biotechnology ,Superparamagnetism - Abstract
WOS: 000431499100008, PubMed: 29082480, Magnetosomes are specialized organelles arranged in intracellular chains in magnetotactic bacteria. The superparamagnetic property of these magnetite crystals provides potential applications as contrast-enhancing agents for magnetic resonance imaging. In this study, we compared two different nanoparticles that are bacterial magnetosome and HSA-coated iron oxide nanoparticles for targeting breast cancer. Both magnetosomes and HSA-coated iron oxide nanoparticles were chemically conjugated to fluorescent-labeled anti-EGFR antibodies. Antibody-conjugated nanoparticles were able to bind the MDA-MB-231 cell line, as assessed by flow cytometry. To compare the cytotoxic effect of nanoparticles, MTT assay was used, and according to the results, HSA-coated iron oxide nanoparticles were less cytotoxic to breast cancer cells than magnetosomes. Magnetosomes were bound with higher rate to breast cancer cells than HSA-coated iron oxide nanoparticles. While 250 mu g/ml of magnetosomes was bound 92 +/- 0.2%, 250 mu g/ml of HSA-coated iron oxide nanoparticles was bound with a rate of 65 +/- 5%. In vivo efficiencies of these nanoparticles on breast cancer generated in nude mice were assessed by MRI imaging. Anti-EGFR-modified nanoparticles provide higher resolution images than unmodified nanoparticles. Also, magnetosome with anti-EGFR produced darker image of the tumor tissue in T2-weighted MRI than HSA-coated iron oxide nanoparticles with anti-EGFR. In vivo MR imaging in a mouse breast cancer model shows effective intratumoral distribution of both nanoparticles in the tumor tissue. However, magnetosome demonstrated higher distribution than HSA-coated iron oxide nanoparticles according to fluorescence microscopy evaluation. According to the results of in vitro and in vivo study results, magnetosomes are promising for targeting and therapy applications of the breast cancer cells., Hacettepe University [014BIYB604002], This study was supported by Hacettepe University. Project number is 014BIYB604002.
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- 2017
58. Dexamethasone suppresses interleukin-22 associated with bacterial infection in vitro and in vivo
- Author
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Ziesché, E., Scheiermann, P., Bachmann, M., Sadik, C. D., Hofstetter, C., Zwissler, B., Pfeilschifter, J., and Mühl, H.
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- 2009
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59. Quantitative atomic force microscopy provides new insight into matrix vesicle mineralization
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Meriem Chadli, Lukasz Bozycki, Maytê Bolean, José Luis Millán, Pietro Ciancaglini, Agnieszka Strzelecka-Kiliszek, Slawomir Pikula, Saida Mebarek, Nicola Rosato, Ana Maria Simao, René Buchet, Andrea Magrini, David Magne, Agnès Girard-Egrot, Massimo Bottini, Colin Farquharson, Justin S. Plaut, Sadik C. Esener, Nencki Institute of Experimental Biology, Polska Akademia Nauk = Polish Academy of Sciences (PAN), Métabolisme, Enzymes et Mécanismes Moléculaires (MEM²), Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut de Chimie du CNRS (INC)-École Supérieure Chimie Physique Électronique de Lyon-Centre National de la Recherche Scientifique (CNRS), Génie Enzymatique, Membrane Biomimétique et Assemblages Supramoléculaires (GEMBAS), and Centro Nacional de Microelectronica [Spain] (CNM)
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0301 basic medicine ,Biomineralization ,Mineralization ,Biophysics ,Nucleation ,Chick Embryo ,Microscopy, Atomic Force ,Biochemistry ,Mineralization (biology) ,Article ,03 medical and health sciences ,Crystallinity ,Atomic force microscopy ,Extracellular Vesicles ,Dynamic light scattering ,Microscopy, Electron, Transmission ,Spectroscopy, Fourier Transform Infrared ,Zeta potential ,Animals ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Settore BIO/10 ,Molecular Biology ,Elastic modulus ,Matrix vesicles ,ComputingMilieux_MISCELLANEOUS ,Nucleation core ,030102 biochemistry & molecular biology ,Chemistry ,Vesicle ,Biomechanical Phenomena ,030104 developmental biology ,Cartilage ,Transmission electron microscopy ,MICROSCOPIA - Abstract
Matrix vesicles (MVs) are a class of extracellular vesicles that initiate mineralization in cartilage, bone, and other vertebrate tissues by accumulating calcium ions (Ca(2+)) and inorganic phosphate (P(i)) within their lumen and forming a nucleation core (NC). After further sequestration of Ca(2+) and P(i), the NC transforms into crystalline complexes. Direct evidence of the existence of the NC and its maturation have been provided solely by analyses of dried samples. We isolated MVs from chicken embryo cartilage and used atomic force microscopy peak force quantitative nanomechanical property mapping (AFM-PFQNM) to measure the nanomechanical and morphological properties of individual MVs under both mineralizing (+Ca(2+)) and non-mineralizing (–Ca(2+)) fluid conditions. The elastic modulus of MVs significantly increased by 4-fold after incubation in mineralization buffer. From AFM mapping data, we inferred the morphological changes of MVs as mineralization progresses: prior to mineralization, a punctate feature, the NC, is present within MVs and this feature grows and stiffens during mineralization until it occupies most of the MV lumen. Dynamic light scattering showed a significant increase in hydrodynamic diameter and no change in the zeta potential of hydrated MVs after incubation with Ca(2+). This validates that crystalline complexes, which are strongly negative relative to MVs, were forming within the lumen of MVs. These data were substantiated by transmission electron microscopy energy dispersive X-ray and Fourier transform infrared spectroscopic analyses of dried MVs, which provide evidence that the complexes increased in size, crystallinity, and Ca/P ratio within MVs during the mineralization process.
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- 2019
60. Photorefractive beam splitter for free-space optical interconnections
- Author
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Gardner, D. Scott, Marchand, Philippe J., Harvey, Phil, Hendrick, W. Lee, and Esener, Sadik C.
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Photorefractive materials -- Research ,Polarized beams (Nuclear physics) -- Research ,Diffraction gratings -- Usage ,Optics -- Research ,Astronomy ,Physics - Abstract
A photorefractive beam splitter (PRBS) is introduced as an alternative to a polarizing beam splitter (PBS) for coupling optical power into reflective modulators in a free-space optical interconnection system. The PRBS uses a single diffraction grating recorded in a photorefractive material to redirect the incident laser light into the first diffraction order and onto the modulators. Reflected interconnection light not matching the Bragg angle criteria transmits uncoupled through the beam splitter. Experimental results show that the PRBS provides better, more uniform transmission for off-axis beams than the currently used PBS.
- Published
- 1998
61. Small-signal-equivalent circuits for a semiconductor laser
- Author
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Kibar, Osman, Van Blerkom, Daniel, Fan, Chi, Marchand, Philippe J., and Esener, Sadik C.
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Electric circuits -- Design and construction ,Semiconductor lasers -- Models ,Astronomy ,Physics - Abstract
Passive electrical circuits whose voltage and current equations are exactly equivalent to the small-signal rate equations of a semiconductor laser are derived to model an electrically modulated laser (verified to be the same as that given in the literature), an optically modulated laser (i.e., a laser used as an optical amplifier), and a multimode laser. These circuits offer a fast and efficient simulation tool with little computational complexity in which the small-signal assumption (i.e., small modulation range) is neither violated nor insufficient for the simulation.
- Published
- 1998
62. Characterization of dielectric and electro-optic properties of PLZT 9/65/35 films on sapphire for electro-optic applications
- Author
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Tunaboylu, Bahadir, Harvey, Phil, and Esener, Sadik C.
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Semiconductor films -- Research ,Electrooptics -- Research ,Dielectrics -- Research ,Business ,Electronics ,Electronics and electrical industries - Abstract
A study was conducted to analyze the dielectric and electro-optic features of lead lanthanum zirconate titanate films deposited on r-plane sapphire. Sputtered film composition was represented as a function of substrate temperature. Results indicated that the films supported good transmission features after annealing and a large effective quadratic electro-optic effect in one furnace annealed film.
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- 1998
63. Speed and energy analysis of digital interconnections: comparison of on-chip, off-chip, and free-space technologies
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Yayla, Gokce I., Marchand, Philippe J., and Esener, Sadik C.
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Very-large-scale integration -- Innovations ,Interconnected electric utility systems -- Innovations ,Digital communications -- Research ,Optoelectronics -- Research ,Astronomy ,Physics - Abstract
We model and compare on-chip (up to wafer scale) and off-chip (multichip module) high-speed electrical interconnections with free-space optical interconnections in terms of speed performance and energy requirements for digital transmission in large-scale systems. For all technologies the interconnections are first modeled and optimized for minimum delay as functions of the interconnection length for both one-to-one and fan-out connections. Then energy requirements are derived as functions of the interconnection length. Free-space optical interconnections that use multiple-quantum-well modulators or vertical-cavity surface-emitting lasers as transmitters are shown to offer a speed-energy product advantage as high as 30 over that of the electrical interconnection technologies. OCIS codes: 200.4650, 250.0250.
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- 1998
64. Materials and systems for two photon 3-D ROM devices
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Dvornikov, Alexander S., Cokgor, Ilkan, Wang, Mark, McCormick, Frederick B., Jr., Esener, Sadik C., and Rentzepis, Peter M.
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Read-only memory -- Design and construction ,Optical storage devices -- Design and construction ,Business ,Engineering and manufacturing industries ,Science and technology - Abstract
The procedures and systems employed for storing and accessing data in three dimensions by two-photon absorption are shown. The materials employed for data storage are organic molecules dispersed in polymer matrices, which change structure and spectra after absorption of light. The writing and accessing of the data can be done either bit-by-bit or in a two-dimensional multibit plane format.
- Published
- 1997
65. Parallel fuzzy inference with an optoelectronic H-tree architecture
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Marsden, Gary C., Olson, Brita, and Esener, Sadik C.
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Optical data processing -- Research ,Fuzzy systems -- Research ,Astronomy ,Physics - Abstract
Fuzzy inference is a method of reasoning with imprecise information. The mathematical operations of fuzzy inference can be stated in terms of generalized vector algebra, in which multiplication and summation are generalized to MIN and MAX operations. An optoelectronic H-tree architecture is ideally suited to perform these generalized vector operations in parallel and requires only a simple imaging optical interconnection. Appropriate data encodings and electronic circuitry permit large scale, pipe-lined systems.
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- 1996
66. Use of moving optical gradient fields for analysis of apoptotic cellular responses in a chronic myeloid leukemia cell model
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Forster, Anita H, Wang, Mark M, Butler, William F, Chachisvilis, Mirianas, Chung, Thomas D.Y, Esener, Sadik C, Hall, Jeffrey M, Kibar, Osman, Lykstad, Kristie, Marchand, Philippe J, Mercer, Elinore M, Pestana, Luis M, Sur, Sudipto, Tu, Eugene, Yang, Rong, Zhang, Haichuan, and Kariv, Ilona
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- 2004
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67. Photonic content-addressable memory system that uses a parallel-readout optical disk
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Krishnamoorthy, Ashok V., Marchand, Philippe J., Yayla, Gokce, and Esener, Sadik C.
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Memory (Computers) -- Research ,Optical disks -- Research ,Optical storage devices -- Research ,Astronomy ,Physics - Published
- 1995
68. Motionless-head parallel-readout optical-disk system: experimental results
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Marchand, Philippe J., Harvey, Philip C., and Esener, Sadik C.
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Optical disks -- Research ,Optical storage devices -- Research ,Astronomy ,Physics - Published
- 1995
69. Digital free-space optical interconnections: a comparison of transmitter technologies
- Author
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Fan, Chi, Mansoorian, Barmak, Van Berklom, Daniel A., Hansen, Mark W., Ozguz, Volkan H., Esener, Sadik C., and Marsden, Gary C.
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Optical data processing -- Equipment and supplies ,Optoelectronic devices -- Evaluation ,Astronomy ,Physics - Abstract
We investigate the performance of free-space optical interconnection systems at the technology level. Specifically, three optical transmitter technologies, lead-lanthanum-zirconate-titanate and multiple-quantum-well modulators and vertical-cavity surface-emitting lasers, are evaluated. System performance is measured in terms of the achievable areal data throughput and the energy required per transmitted bit. It is shown that lead-lanthanum-zirconate-titanate modulator and vertical-cavity surface-emitting laser technologies are well suited for applications in which a largo fan-out per transmitter is required but the total number of transmitters is relatively small. Multiple-quantum-well modulators, however, are good candidates for applications in which many transmitters with a limited fan-out are needed. Key words: Free-space optical interconnection, lead-lanthanum-zirconate-titanate modulator, multiple-quantum-well modulator, surface-emitting laser.
- Published
- 1995
70. Motionless-head parallel readout optical-disk system
- Author
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Marchand, Philippe J., Krishnamoorthy, Ashok V., Urquhart, Kristopher S., Ambs, Pierre, Esener, Sadik C., and Sing H. Lee
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Memory (Computers) -- Research ,Parallel processing -- Research ,Optical storage devices -- Research ,Optical disks -- Research ,Astronomy ,Physics - Abstract
The design, analysis, and feasibility of a novel motionless-head parallel readout optical-disk system are presented. The system is designed to read data blocks distributed radially on the disk's active surface, and it has the unique advantage that no mechanical motion of the head is required for fast access, focusing, or tracking. Data access is achieved solely through the disk rotation, and the entire memory can be read in one rotation. In principle, this permits a data rate of up to 1 Gbyte/s. The data blocks are one-dimensional Fourier-transform computer-generated holograms, each reconstructing one column of a two-dimensional output image. Owing to the information redundancy and shift invariance properties of Fourier-transform holograms, tracking and focusing servo requirements are eliminated. A holographic encoding method is developed to produce high signal-to-noise ratio reconstructions and to reduce significantly the radial alignment requirements of the recorded data bits. The optical readout system consists of only three cylindrical lenses. Two of these may be replaced by a single hybrid diffractive -refractive optical element for easier system alignment and better optical performance, i.e., reduced aberrations and improved resolution. The throughputs and retrieval times of this parallel readout optical-disk system make it well suited to a variety of parallel computing architectures, including a high-performance optoelectronic associative memory (Proc. Soc. Photo-Opt. Instrum. Eng. 1347, 86 (1990)).
- Published
- 1993
71. Grain-size considerations for optoelectronic multistage interconnection networks
- Author
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Krishnamoorthy, Ashok V., Marchand, Philippe J., Kiamilev, Fouad E., and Esener, Sadik C.
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Optoelectronic devices -- Research ,Electric power distribution -- Research ,Pixels -- Analysis ,Optical data processing -- Research ,Astronomy ,Physics - Abstract
This paper investigates, at the system level, the performance - cost trade-off between optical and electronic interconnects in an optoelectronic interconnection network. The specific system considered is a packet-switched, free-space optoelectronic shuffle-exchange multistage interconnection network (MIN). System bandwidth is used as the performance measure, while system area, system power, and system volume constitute the cost measures. A detailed design and analysis of a two-dimensional (2-D) optoelectronic shuffle-exchange routing network with variable grain size K is presented. The architecture permits the conventional 2 x 2 switches or grains to be generalized to larger K x K grain sizes by replacing optical interconnects with electronic wires without affecting the functionality of the system. Thus the system consists of log(sub K) N optoelectronic stages interconnected with free-space K-shuffles. When K = N, the MIN consists of a single electronic stage with optical input-output. The system design uses an efficient 2-D VLSI layout and a single diffractive optical element between stages to provide the 2-D K-shuffle interconnection. Results indicate that there is an optimum range of grain sizes that provides the best performance per cost. For the specific VLSI/GaAs multiple quantum well technology and system architecture considered, grain sizes larger than 256 x 256 result in a reduced performance, while grain sizes smaller than 16 x 16 have a high cost. For a network with 4096 channels, the useful range of grain sizes corresponds to approximately 250-400 electronic transistors per optical input-output channel. The effect of varying certain technology parameters such as the number of hologram phase levels, the modulator driving voltage, the minimum detectable power, and VLSI minimum feature size on the optimum grain-size system is studied. For instance, results show that using four phase levels for the interconnection hologram is a good compromise for the cost functions mentioned above. As VLSI minimum feature sizes decrease, the optimum grain size increases, whereas, if optical interconnect performance in terms of the detector power of modulator driving voltage requirements improves, the optimum grain size may be reduced. Finally, several architectural modifications to the system, such as K x K contention-free switches and sorting networks, are investigated and optimized for grain size. Results indicate that system bandwidth can be increased, but at the price of reduced performance/cost. The optoelectronic MIN architectures considered thus provide a broad range of performance/cost alternatives and offer a superior performance over purely electronic MIN's.
- Published
- 1992
72. A scalable optoelectronic neural system using free-space optical interconnects
- Author
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Krishnamoorthy, Ashok V., Yayla, Gokce, and Esener, Sadik C.
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Optoelectronics -- Research ,Neural networks -- Research ,Business ,Computers ,Electronics ,Electronics and electrical industries - Abstract
The design of a scalable, three-dimensional optoelectronic neural network utilizing the technology of free-space optical interconnects to surmount very-large-scale-integrated circuit communication problems is introduced. In the study, the neural and optical systems design along with the analog neuron and synapse circuits are presented. The neural system, which works on pulse-width-modulating optical neurons and pulse-amplitude-modulating electronic synapses, are also compared to a very-large-scale-integration counterpart.
- Published
- 1992
73. The role of coagulation and platelets in colon cancer-associated thrombosis
- Author
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Heidi E. Hamm, Terry K. Morgan, Robert J. Kayton, Jevgenia Zilberman-Rudenko, Annachiara Mitrugno, Joanna L. Sylman, Andras Gruber, Craig D. Williams, Yumie Takata, Samuel Tassi Yunga, Ying Zhang, Xiaolin Nan, Sadik C. Esener, Matthew T. Duvernay, Randall Armstrong, Owen J. T. McCarty, Toshiaki Shirai, Joseph J. Shatzel, and Jessica Hebert
- Subjects
0301 basic medicine ,Blood Platelets ,medicine.medical_specialty ,Physiology ,Colorectal cancer ,Malignancy ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Cell Line, Tumor ,medicine ,Humans ,Platelet ,Blood Coagulation ,Cause of death ,Retrospective Studies ,Aspirin ,business.industry ,Cancer ,Thrombosis ,Cell Biology ,medicine.disease ,030104 developmental biology ,Cross-Sectional Studies ,Coagulation ,030220 oncology & carcinogenesis ,Colonic Neoplasms ,business ,medicine.drug ,Research Article - Abstract
Cancer-associated thrombosis is a common first presenting sign of malignancy and is currently the second leading cause of death in cancer patients after their malignancy. However, the molecular mechanisms underlying cancer-associated thrombosis remain undefined. In this study, we aimed to develop a better understanding of how cancer cells affect the coagulation cascade and platelet activation to induce a prothrombotic phenotype. Our results show that colon cancer cells trigger platelet activation in a manner dependent on cancer cell tissue factor (TF) expression, thrombin generation, activation of the protease-activated receptor 4 (PAR4) on platelets and consequent release of ADP and thromboxane A2. Platelet-colon cancer cell interactions potentiated the release of platelet-derived extracellular vesicles (EVs) rather than cancer cell-derived EVs. Our data show that single colon cancer cells were capable of recruiting and activating platelets and generating fibrin in plasma under shear flow. Finally, in a retrospective analysis of colon cancer patients, we found that the number of venous thromboembolism events was 4.5 times higher in colon cancer patients than in a control population. In conclusion, our data suggest that platelet-cancer cell interactions and perhaps platelet procoagulant EVs may contribute to the prothrombotic phenotype of colon cancer patients. Our work may provide rationale for targeting platelet-cancer cell interactions with PAR4 antagonists together with aspirin and/or ADP receptor antagonists as a potential intervention to limit cancer-associated thrombosis, balancing safety with efficacy.
- Published
- 2018
74. Free-space optical interconnection: A technology comparison of vertical-cavity surface-emitting lasers and multiple-quantum-well modulators
- Author
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Fan, Chi, Van BLerkom, Daniel A., Hendrick, W. Lee, and Esener, Sadik C.
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- 1996
- Full Text
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75. Quantitative atomic force microscopy provides new insight into matrix vesicle mineralization
- Author
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Plaut, Justin S., primary, Strzelecka-Kiliszek, Agnieszka, additional, Bozycki, Lukasz, additional, Pikula, Slawomir, additional, Buchet, René, additional, Mebarek, Saida, additional, Chadli, Meriem, additional, Bolean, Maytê, additional, Simao, Ana M.S., additional, Ciancaglini, Pietro, additional, Magrini, Andrea, additional, Rosato, Nicola, additional, Magne, David, additional, Girard-Egrot, Agnès, additional, Farquharson, Colin, additional, Esener, Sadik C., additional, Millan, José L., additional, and Bottini, Massimo, additional
- Published
- 2019
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76. Information Photonics: introduction
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Barbastathis, George, Krishnamoorthy, Ashok, and Esener, Sadik C.
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Astronomy ,Physics - Abstract
This Applied Optics Information Photonics (IP) special feature presents 14 papers that describe recent advances in the field. Information within this issue contains a representative selection of topics that were presented at the Optical Society of America Topical Meeting on Information Photonics (IP '05) as well as additional papers that were not presented at IP '05 but which were found to be relevant to IP as areas of current and future growth. OCIS codes: 070.0070, 200.0200, 210.0210, 170.4520.
- Published
- 2006
77. Parallel transport of biological cells using individually addressable VCSEL arrays as optical tweezers
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Flynn, Richard A., Birkbeck, Aaron L., Gross, Matthias, Ozkan, Mihrimah, Shao, Bing, Wang, Mark M, and Esener, Sadik C
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- 2002
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78. Targeted and reversible cancer cell-binding DNA nanoparticles
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Ana B. Sanchez, Laura E. Ruff, Bradley T. Messmer, Jennifer Y. Marciniak, and Sadik C. Esener
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Technology ,Dna nanoparticles ,pancreatic cancer ,Physical and theoretical chemistry ,QD450-801 ,Energy Engineering and Power Technology ,Medicine (miscellaneous) ,Nanoparticle ,Nanotechnology ,TP1-1185 ,dna ,Nanomaterials ,Biomaterials ,chemistry.chemical_compound ,Affinity Reagent ,Pancreatic cancer ,medicine ,Chemistry ,Process Chemistry and Technology ,nanoparticle ,Chemical technology ,Industrial chemistry ,medicine.disease ,Surfaces, Coatings and Films ,affinity reagent ,Cancer cell ,DNA ,Biotechnology - Abstract
DNA nanoparticles (DeNAno) produced by rolling circle replication of circular oligonucleotide templates are a novel format for the selection of cell-binding reagents from randomized libraries. DeNAno particles consist of several hundred concatemers and can leverage that multivalency to bind to complex surfaces such as cells. In this study, an iterative bio-panning approach was used to recover particles that bound to the mouse pancreatic cancer line, Panc-02. These particles shared a primary sequence motif. Hybridization of a locked nucleic acid complimentary to this motif both inhibited cell binding and released pre-bound DeNAno particles from the cells. The monomeric form of one of the selected sequences was unable to compete with the cognate particle, consistent with a low-affinity, but high-avidity, type interaction. DeNAno library selection against cancer or other cell types can, thus, yield novel cell binding agents without a priori knowledge of particular cell surface molecules.
- Published
- 2014
79. Optical Manipulation of Inorganic and Organic Objects in Soft Microfluidic Devices
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Ozkan, Cengiz S., Ata, Erhan, Ozkan, Mihrimah, and Esener, Sadik C.
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- 2000
- Full Text
- View/download PDF
80. Electrokinetic Assembly of Microsphere and Cellular Arrays
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Ozkan, Mihrimah, Esener, Sadik C., and Bhatia, Sangeeta N.
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- 2000
- Full Text
- View/download PDF
81. Nanoparticle Cloaking of Viral Vectors for Enhanced Gene Delivery
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Sapre, Ajay Ajit, Engler, Adam J1, Esener, Sadik C, Sapre, Ajay Ajit, Sapre, Ajay Ajit, Engler, Adam J1, Esener, Sadik C, and Sapre, Ajay Ajit
- Abstract
Gene therapy has the potential to treat a wide range of diseases and ailments from cancer to blindness by altering or overcoming disease at its genetic roots. This is accomplished by adding or alternating genetic information of diseased tissue or at a distant site for systemic treatment. Genetically modified viruses are the most efficient tools for delivery of genes, but have significant side effects that have limited the success of clinical trials. Adenovirus (Ad) is a DNA virus that has been tested in over 100 clinical trials and is the focus of this dissertation. Innate and adaptive immune responses, hepatic clearance, and cellular tropism are the primary causes of poor Ad clinical translation. Cloaking technologies using synthetic or biologic materials have the potential to overcome these issues. Chapter 2 & 3 describes a method to address clinical barriers by encapsulating Ad in silica as a nanoparticle formulation. Silica is biodegradeable, biocompatible, and used in variety of nanoparticle formulations to enhance drug delivery. Silica encapsulated Ad (SiAd) enhances transduction and expands tropism in vitro. In immune-compromised mice, SiAd enhanced tumor transduction while reducing liver uptake and in immune-competent mice, SiAd reduced both the innate and adaptive immune response against Ad. As a model for cancer gene therapy, we used Ad expressing TNF-related apoptosis-inducing ligand (TRAIL) and show inhibited tumor growth with SiAd-TRAIL. In chapter 4, we explore applying the concepts of the previous chapters to Adeno-associated virus (AAV), which is another viral vector gaining traction for gene therapy in the clinic and one that is subject to similar barriers to clinical success as Ad. We explore exosome membrane cloaking and silica cloaking as methods to enhance AAV transduction in vitro. Overall, this dissertation covers techniques that seek to merge the efficiency of viral gene expression with the versatility of nanoparticle technology to addres
- Published
- 2018
82. Identification of the HLA locus and mitochondrial variants as genetic risk factors for Bullous Pemphigoid
- Author
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Schwarm, C., Koenig, I., Gola, D., Holtsche, M. M., Dieterich, A., Hirose, M., Kuenstner, A., Freitag, M., Bhandari, A., Busch, H., Nuernberg, P., Erdmann, J., Jacobs, G., Sadik, C., Zillikens, D., Schmidt, E., Ibrahim, S., Schwarm, C., Koenig, I., Gola, D., Holtsche, M. M., Dieterich, A., Hirose, M., Kuenstner, A., Freitag, M., Bhandari, A., Busch, H., Nuernberg, P., Erdmann, J., Jacobs, G., Sadik, C., Zillikens, D., Schmidt, E., and Ibrahim, S.
- Published
- 2018
83. Drug Delivery Nanoparticles with Locally Tunable Toxicity Made Entirely from a Light-Activatable Prodrug of Doxorubicin
- Author
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Santosh Aryal, Eran Zahavy, Stuart Ibsen, Selin Esener, Michael W. Berns, Stacey Kuo, Carolyn E. Schutt, and Sadik C. Esener
- Subjects
0301 basic medicine ,Light-activatable ,Light ,Pharmaceutical Science ,Nanoparticle ,Polyethylene Glycols ,0302 clinical medicine ,Nanotechnology ,Pharmacology (medical) ,Prodrugs ,Pharmacology & Pharmacy ,Prodrug ,Cancer ,Drug Carriers ,Tumor ,Chemistry ,Pharmacology and Pharmaceutical Sciences ,Hydrogen-Ion Concentration ,5.1 Pharmaceuticals ,030220 oncology & carcinogenesis ,Drug delivery ,Toxicity ,Molecular Medicine ,Nanoparticle drug delivery vehicle ,Development of treatments and therapeutic interventions ,medicine.drug ,Biotechnology ,Surface Properties ,Biotin ,Antineoplastic Agents ,Bioengineering ,Article ,DNA intercalation ,Cell Line ,03 medical and health sciences ,Rare Diseases ,Cell Line, Tumor ,medicine ,Humans ,Doxorubicin ,Particle Size ,Pharmacology ,Average diameter ,Organic Chemistry ,Tumor tissue ,Drug Liberation ,030104 developmental biology ,Orphan Drug ,A549 Cells ,Biophysics ,Nanoparticles ,Conjugate - Abstract
PURPOSE: A major challenge facing nanoparticle-based delivery of chemotherapy agents is the natural and unavoidable accumulation of these particles in healthy tissue resulting in local toxicity and dose-limiting side effects. To address this issue, we have designed and characterized a new prodrug nanoparticle with controllable toxicity allowing a locally-delivered light trigger to convert the payload of the particle from a low to a high toxicity state. METHODS: The nanoparticles are created entirely from light-activatable prodrug molecules using a nanoprecipitation process. The prodrug is a conjugate of doxorubicin and photocleavable biotin (DOX-PCB). RESULTS: These DOX-PCB nanoparticles are 30 times less toxic to cells than doxorubicin, but can be activated to release pure therapeutic doxorubicin when exposed to 365 nm light. These nanoparticles have an average diameter of around 100 nm and achieve the maximum possible prodrug loading capacity since no support structure or coating is required to prevent loss of prodrug from the nanoparticle. CONCLUSIONS: These light activatable nanoparticles demonstrate tunable toxicity and can be used to facilitate future therapy development whereby light delivered specifically to the tumor tissue would locally convert the nanoparticles to doxorubicin while leaving nanoparticles accumulated in healthy tissue in the less toxic prodrug form.
- Published
- 2017
84. Fiber sensor assisted in-vivo needle guidance for minimally invasive procedures (Conference Presentation)
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Sadik C. Esener, Mohammad Eghtedari, Cherng Chao, Saharnaz Baghdadchi, and Robert F. Mattrey
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Fiber sensor ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,In vivo ,Biopsy ,Medicine ,Fluoroscopy ,Radiology ,Presentation (obstetrics) ,business ,Needle guidance ,Minimally invasive procedures - Published
- 2017
85. Oxidative Stress: Ultrasound Detection of Regional Oxidative Stress in Deep Tissues Using Novel Enzyme Loaded Nanoparticles (Adv. Healthcare Mater. 5/2017)
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Christopher D. Malone, Robert F. Mattrey, Emilia S. Olson, Sadik C. Esener, and Inanc Ortac
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chemistry.chemical_classification ,Materials science ,business.industry ,Ultrasound ,Biomedical Engineering ,Acute kidney injury ,Pharmaceutical Science ,Nanoparticle ,medicine.disease ,medicine.disease_cause ,Biomaterials ,Enzyme ,chemistry ,medicine ,business ,Oxidative stress ,Biomedical engineering - Published
- 2017
86. Manipulating Nanoscale Features on the Surface of Dye-Loaded Microbubbles to Increase Their Ultrasound-Modulated Fluorescence Output
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Michael Benchimol, Carolyn E. Schutt, Sadik C. Esener, Mark Hsu, and Stuart Ibsen
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Materials science ,Nanostructure ,business.industry ,Transition temperature ,Ultrasound ,Nanotechnology ,General Chemistry ,Lipids ,Fluorescence ,Article ,Nanostructures ,Biomaterials ,Fluorescence intensity ,Biophysics ,Microbubbles ,Ultrasonics ,General Materials Science ,Lipid bilayer ,business ,Nanoscopic scale ,Biotechnology - Abstract
The nanoscale surface features of lipid-coated microbubbles can dramatically affect how the lipids interact with one another as the microbubble diameter expands and contracts under the influence of ultrasound. During microbubble manufacturing, the different lipid shell species naturally partition forming concentrated lipid islands. In this study the dynamics of how these nanoscale islands accommodate the expansion of the microbubbles are monitored by measuring the fluorescence intensity changes that occur as self-quenching lipophilic dye molecules embedded in the lipid layer change their distance from one another. It was found that when the dye molecules were concentrated in islands, less than 5% of the microbubbles displayed measurable fluorescence intensity modulation indicating the islands were not able to expand sufficiently for the dye molecules to separate from one another. When the microbubbles were heated and cooled rapidly through the lipid transition temperature the islands were melted creating an even distribution of dye about the surface. This resulted in over 50% of the microbubbles displaying the fluorescence-modulated signal indicating that the dye molecules could now separate sufficiently to change their self-quenching efficiency. The separation of the surface lipids in these different formations has significant implications for microbubble development as ultrasound and optical contrast agents.
- Published
- 2014
87. Dual-Porosity Hollow Nanoparticles for the Immunoprotection and Delivery of Nonhuman Enzymes
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Dmitri Simberg, William C. Trogler, Sadik C. Esener, Inanc Ortac, Jian Yang, Roger Y. Tsien, Ya san Yeh, and Bradley T. Messmer
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Letter ,Materials science ,nonhuman enzymes ,enzyme encapsulation ,Nanoparticle ,Bioengineering ,Nanotechnology ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,immune response ,Mice ,Bacillus cereus ,Bacterial Proteins ,Animals ,General Materials Science ,Porosity ,chemistry.chemical_classification ,Drug Carriers ,Mice, Inbred BALB C ,Nanoporous ,Nanoshells ,Mechanical Engineering ,technology, industry, and agriculture ,General Chemistry ,Penicillinase ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Small molecule ,Nanoshell ,0104 chemical sciences ,Nanomedicine ,Enzyme ,chemistry ,silica ,nanoparticles ,0210 nano-technology ,Drug carrier - Abstract
Although enzymes of nonhuman origin have been studied for a variety of therapeutic and diagnostic applications, their use has been limited by the immune responses generated against them. The described dual-porosity hollow nanoparticle platform obviates immune attack on nonhuman enzymes paving the way to in vivo applications including enzyme-prodrug therapies and enzymatic depletion of tumor nutrients. This platform is manufactured with a versatile, scalable, and robust fabrication method. It efficiently encapsulates macromolecular cargos filled through mesopores into a hollow interior, shielding them from antibodies and proteases once the mesopores are sealed with nanoporous material. The nanoporous shell allows small molecule diffusion allowing interaction with the large macromolecular payload in the hollow center. The approach has been validated in vivo using l-asparaginase to achieve l-asparagine depletion in the presence of neutralizing antibodies.
- Published
- 2014
88. Using microbubbles to transduce ultrasound into mechanical deformations capable of activating neurons genetically sensitized to membrane stretch
- Author
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Stuart Ibsen, Sreekanth H. Chalasani, Carolyn E. Schutt, Ada Tong, and Sadik C. Esener
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Materials science ,Acoustics and Ultrasonics ,biology ,business.industry ,Ultrasound ,biology.organism_classification ,Calcium dependent ,Membrane stretch ,Arts and Humanities (miscellaneous) ,Biophysics ,Microbubbles ,Ultrasound pulse ,Mechanotransduction ,business ,Caenorhabditis elegans ,Ion channel - Abstract
Ultrasound is an ideal modality to stimulate neurons due to its ability to focus through deep tissue. To facilitate the selective ultrasound activation of neurons within a dense network, we have developed a new method called sonogenetics where we genetically sensitize individual neurons to respond to the mechanical deformations created by an ultrasound pulse. This was done by misexpressing the TRP4 mechanotransduction ion channel in select neurons. As a model system, we used Caenorhabditis elegans nematodes which were allowed to freely move on the surface of an agar gel. We found that ultrasound alone did not create enough mechanical deformation at the surface of the agar to activate the TRP4 channels. To overcome this challenge, we introduced stabilized microbubbles to the system by plating them on the gel surface where they naturally surrounded the worms. The interaction between the microbubbles and the ultrasound created mechanical deformations that propagated into the body of the worm and successfully activated the expressed TRP4 causing subsequent neural activation. Activation was confirmed using calcium dependent fluorescent dyes and by quantifying whole worm behavioral changes. This technique can be a valuable tool for future applications in mammalian neural systems aimed at understanding complex neural circuits.Ultrasound is an ideal modality to stimulate neurons due to its ability to focus through deep tissue. To facilitate the selective ultrasound activation of neurons within a dense network, we have developed a new method called sonogenetics where we genetically sensitize individual neurons to respond to the mechanical deformations created by an ultrasound pulse. This was done by misexpressing the TRP4 mechanotransduction ion channel in select neurons. As a model system, we used Caenorhabditis elegans nematodes which were allowed to freely move on the surface of an agar gel. We found that ultrasound alone did not create enough mechanical deformation at the surface of the agar to activate the TRP4 channels. To overcome this challenge, we introduced stabilized microbubbles to the system by plating them on the gel surface where they naturally surrounded the worms. The interaction between the microbubbles and the ultrasound created mechanical deformations that propagated into the body of the worm and successfully...
- Published
- 2019
89. In vivo ultrasound visualization of non-occlusive blood clots with thrombin-sensitive contrast agents
- Author
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Jennifer N. Cha, Christopher V. Barback, Matthew A. Nakatsuka, Robert F. Mattrey, Andrew P. Goodwin, Sadik C. Esener, Kirsten R. Fitch, and Alexander R. Farwell
- Subjects
media_common.quotation_subject ,Biophysics ,Contrast Media ,Bioengineering ,Article ,Biomaterials ,Thrombin ,Filling defect ,In vivo ,medicine ,Animals ,Contrast (vision) ,Blood Coagulation ,Ultrasonography ,media_common ,Venous Thrombosis ,Microbubbles ,Base Sequence ,business.industry ,Ultrasound ,Aptamers, Nucleotide ,medicine.disease ,Thrombosis ,Venous thrombosis ,Mechanics of Materials ,Ceramics and Composites ,Female ,Rabbits ,business ,Biomedical engineering ,medicine.drug - Abstract
The use of microbubbles as ultrasound contrast agents is one of the primary methods to diagnose deep venous thrombosis. However, current microbubble imaging strategies require either a clot sufficiently large to produce a circulation filling defect or a clot with sufficient vascularization to allow for targeted accumulation of contrast agents. Previously, we reported the design of a microbubble formulation that modulated its ability to generate ultrasound contrast from interaction with thrombin through incorporation of aptamer-containing DNA crosslinks in the encapsulating shell, enabling the measurement of a local chemical environment by changes in acoustic activity. However, this contrast agent lacked sufficient stability and lifetime in blood to be used as a diagnostic tool. Here we describe a PEG-stabilized, thrombin-activated microbubble (PSTA-MB) with sufficient stability to be used in vivo in circulation with no change in biomarker sensitivity. In the presence of actively clotting blood, PSTA-MBs showed a 5-fold increase in acoustic activity. Specificity for the presence of thrombin and stability under constant shear flow were demonstrated in a home-built in vitro model. Finally, PSTA-MBs were able to detect the presence of an active clot within the vena cava of a rabbit sufficiently small as to not be visible by current non-specific contrast agents. By activating in non-occlusive environments, these contrast agents will be able to detect clots not diagnosable by current contrast agents.
- Published
- 2013
90. LB1513 Autoantibodies against collagen XVII (BP180) favor the development of cutaneous toxicity during checkpoint inhibitor therapy
- Author
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Hasan Ali, O., primary, Bomze, D., additional, Ring, S., additional, Berner, F., additional, Fässler, M., additional, Diem, S., additional, Cozzio, A., additional, Jochum, W., additional, Zillikens, D., additional, Sadik, C., additional, and Flatz, L., additional
- Published
- 2018
- Full Text
- View/download PDF
91. Assessment of health risk induced by heavy metal contents in drinking water
- Author
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Alma Shehu, Majlinda Vasjari, Sonila Duka, Loreta Vallja, Nevila Broli, and Sadik Cenolli
- Subjects
cancer risk ,drinking water ,health risk assessment ,heavy metals ,toxicity ,Environmental technology. Sanitary engineering ,TD1-1066 - Abstract
Investigation of the quality of drinking water was carried out aiming to evaluate health risks and toxicity arising from the content of heavy metals. Samples were analysed for the content of Pb, Cd, Cr, Ni, Cu, Fe, Zn, Al, and Mn. Water quality and health risk assessment were evaluated by comparing the obtained data with current National, EU, and WHO regulations as well as by using the hazard quotient and cancer risk (HQ and CR). Results showed that Al (in one sample) and Ni (in five samples) exceeded the maximum allowed limits. Based on the metal pollution index, MPI, it was concluded that none of the samples exhibited ‘very good quality’ (MPI > 0.3), whereas the overall quality of Glina bottled water was classified as toxic to humans and Trebeshina as moderately toxic. Selected samples exhibited no evident health risk to humans (HQ < 1). Among the toxic metals analysed, Ni, Cd, and Cr exhibited higher values of cancer risk index (CR > 10−4), whereas Pb exhibited the lowest value. Bottled water such as Qafeshtama, Lajthiza, Tepelena, Dukat, Spring, Living, and Aqua Pana as well as tap water collected in the area of Student's City in Tirana can be considered safe for human consumption. HIGHLIGHTS Heavy metals can cause toxicity.; Severe health effects are closely related to long term use.; Toxicity and Cancer Risk indexes were used to evaluate water safety.;
- Published
- 2022
- Full Text
- View/download PDF
92. Extraction protocol and mass spectrometry method for quantification of doxorubicin released locally from prodrugs in tumor tissue
- Author
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Yongxuan Su, Stephen P. Adams, Eran Zahavy, Sadik C. Esener, Wolf Wrasidlo, John T. Norton, Tomoko Hayashi, and Stuart Ibsen
- Subjects
Detection limit ,Biodistribution ,Chromatography ,Chemistry ,Extraction (chemistry) ,medicine ,Doxorubicin ,Prodrug ,Mass spectrometry ,Tandem mass spectrometry ,Spectroscopy ,medicine.drug ,Epirubicin - Abstract
The localized conversion of inactive doxorubicin prodrug chemotherapeutics to pharmacalogically active forms is difficult to quantify in mouse tumor models because it occurs only in small regions of tissue. The tumor tissue extraction protocol and LC-MS/MS analysis method described here were optimized to obtain a detection limit of 7.8 pg for the activated doxorubicin and 0.36 ng for the doxorubicin prodrug. This method can be useful for determining the biodistribution and activation efficiency for many different doxorubicin prodrugs. It can also be used for quantification of doxorubicin from tumor models that have poor vascularization resulting in low tissue accumulation.
- Published
- 2013
93. Nanofiber Near-Field Light–Matter Interactions for Enhanced Detection of Molecular Level Displacements and Dynamics
- Author
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Kanguk Kim, Daniel Heineck, Yinmin Wang, Donald J. Sirbuly, Sarah E. Baker, Nicholas O. Fischer, Ilsun Yoon, and Sadik C. Esener
- Subjects
Materials science ,Light ,Nanofibers ,Nanophotonics ,DNA, Single-Stranded ,Physics::Optics ,Nanoparticle ,Bioengineering ,Near and far field ,Optical field ,Optics ,Fiber Optic Technology ,Scattering, Radiation ,General Materials Science ,Coupling ,Plasmonic nanoparticles ,Scattering ,business.industry ,Mechanical Engineering ,Finite-difference time-domain method ,General Chemistry ,Condensed Matter Physics ,Nanoparticles ,Optoelectronics ,Gold ,business - Abstract
We experimentally demonstrate that plasmonic nanoparticles embedded in the evanescent field of subwavelength optical waveguides (WGs) are highly sensitive to distances normal to the propagation of light, showing an ~10× increase in spatial resolution compared to the optical field decay of the WG. The scattering cross-section of the Au nanoparticle is increased by the plasmon-dielectric coupling interaction when the nanoparticle is placed near the dielectric surface of the WG, and the decay of the scattering signal is enhanced, showing angstrom level distance sensitivity within 10 nm from the WG. Numerical studies with the finite-difference time-domain (FDTD) method correlate well with the experimental results. To demonstrate real-time monitoring of a single molecule stretching in the evanescent field, we linked individual single-stranded DNA molecules between the WG and plasmonic nanoparticles and pushed on the nanoparticles with fluidic forces. The simple design and ease of obtaining optical feedback on molecular displacements makes our approach ideal for new in situ force sensing devices, imaging technologies, and high-throughput molecular analysis.
- Published
- 2013
94. Ultrasound Detection of Regional Oxidative Stress in Deep Tissues Using Novel Enzyme Loaded Nanoparticles
- Author
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Inanc Ortac, Christopher D. Malone, Sadik C. Esener, Robert F. Mattrey, and Emilia S. Olson
- Subjects
Pathology ,medicine.medical_specialty ,Materials science ,Biomedical Engineering ,Pharmaceutical Science ,02 engineering and technology ,Pharmacology ,010402 general chemistry ,medicine.disease_cause ,Kidney ,01 natural sciences ,Article ,Biomaterials ,Rats, Sprague-Dawley ,Immune system ,In vivo ,Ischemia ,medicine ,Animals ,Ultrasonography ,biology ,business.industry ,Ultrasound ,Acute kidney injury ,021001 nanoscience & nanotechnology ,medicine.disease ,Catalase ,0104 chemical sciences ,Rats ,Disease Models, Animal ,Oxidative Stress ,medicine.anatomical_structure ,Microbubbles ,biology.protein ,Female ,0210 nano-technology ,business ,Oxidative stress ,Nanospheres - Abstract
Oxidative stress is a powerful tool that is critical to immune mediated responses in healthy individuals, yet additionally plays a crucial role in development of cancer, inflammatory pathologies and tissue ischemia. Despite this, there remain relatively few molecular tools to study oxidative stress, particularly in living mammals. To develop an intravenously injectable probe capable of labeling sites of oxidative stress in vivo, we designed and fabricated 200 nm CATalase Synthetic Hollow Enzyme Loaded nanoSpheres (catSHELS) using a versatile enzyme nanoencapsulation method. CatSHELS catalyze H2O2 to water and oxygen producing microbubbles that can be detected and imaged using a clinical ultrasound system. CatSHELS were optimized in vitro to maximize ultrasound signal and their functionality was demonstrated in rat ischemic renal injury (IRI) model. Ischemic oxidative injury was induced in a single kidney of normal rats by clamping the renal artery for1 hour followed by two hours of reperfusion. Imaging of both kidneys was performed following the intravenous bolus injection of 1012 catSHELS of the optimized formulation. There was significant increase in ultrasound signal of the injured kidney relative to controls. Our method offers a novel intravenous approach to detect oxidative stress in deep tissues in living animals.
- Published
- 2016
95. Ultrasound characterization of oxygen contrast agents produced during the reaction of hydrogen peroxide with catalase-loaded nanoparticles
- Author
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Sadik C. Esener, Robert F. Mattrey, Kenneth Hoyt, Christopher D. Malone, and Yasan Yeh
- Subjects
biology ,Nanoparticle ,chemistry.chemical_element ,Nanotechnology ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Oxygen ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,chemistry ,Pulmonary surfactant ,Catalase ,In vivo ,biology.protein ,Microbubbles ,0210 nano-technology ,Hydrogen peroxide ,Mechanical index ,Nuclear chemistry - Abstract
We present a novel class of ultrasound (US) contrast agents, which enable de novo production of echogenic O 2 microbubbles (MBs) in vivo in regions with elevated hydrogen peroxide (H 2 O 2 ). The agent is a 200 nm silica shell nanoparticle loaded with catalase (catSHEL) that catalyzes H 2 O 2 into water (H 2 O) and oxygen (O 2 ). Importantly, this reactive process produces O 2 MBs visible during US imaging. We have shown that this agent can detect elevated levels of H 2 O 2 in kidneys with acute kidney injury (AKI). The purpose of this in vitro study is to further characterize the US properties of these O 2 MBs. When exposed to US energy (mechanical index, MI = 0.07), a marked increase in the 2nd harmonic signal was recorded after the addition of H 2 O 2 when the catSHELs were suspended in 25% plasma + phosphate buffered saline (PBS) versus PBS alone (13.1 vs. 1.7 dB). This harmonic gain abated at higher plasma concentrations (6.0 dB at 100% plasma) and higher (MI = 0.10) and lower (MI = 0.03) US transmit powers (8.8 and 5.7 dB, respectively). The harmonic signal also increased with increasing surfactant concentration. Again, the response was greatest at moderate acoustic power. O 2 MBs produced in PBS alone were transient and relatively large, while those produced at increasing plasma and surfactant concentrations were smaller and longer lasting, suggesting that they are stabilized in plasma or surfactant. Overall, nonlinear US imaging may be suitable for the local visualization of O 2 MBs produced in response to AKI.
- Published
- 2016
96. Molecular and Spectroscopic Characterization of Aspergillus flavipes and Pseudomonas putida L-Methionine γ-Lyase in Vitro
- Author
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Gul Shad Ali, Salah E. Abdel Ghany, Ashraf S.A. El-Sayed, Laura E. Ruff, and Sadik C. Esener
- Subjects
0301 basic medicine ,Aldimine ,Protein Denaturation ,Stereochemistry ,Bioengineering ,Applied Microbiology and Biotechnology ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Protein Aggregates ,Hydroxylamine ,Catalytic Domain ,Enzyme Stability ,Humans ,Trypsin ,Molecular Biology ,Pyridoxal ,Schiff Bases ,chemistry.chemical_classification ,Schiff base ,030102 biochemistry & molecular biology ,biology ,Pseudomonas putida ,Spectrum Analysis ,Tryptophan ,Temperature ,Active site ,General Medicine ,Hydrogen-Ion Concentration ,Lyase ,biology.organism_classification ,Carbon-Sulfur Lyases ,Protein Subunits ,030104 developmental biology ,Aspergillus ,chemistry ,Pyridoxal Phosphate ,biology.protein ,Biotechnology - Abstract
Pseudomonas putida L-methionine γ-lyase (PpMGL) has been recognized as an efficient anticancer agent, however, its antigenicity and stability remain as critical challenges for its clinical use. From our studies, Aspergillus flavipes L-methionine γ-lyase (AfMGL) displayed more affordable biochemical properties than PpMGL. Thus, the objective of this work was to comparatively assess the functional properties of AfMGL and PpMGL via stability of their internal aldimine linkage, tautomerism of pyridoxal 5′-phosphate (PLP) and structural stability responsive to physicochemical factors. The internal Schiff base of AfMGL and PpMGL have the same stability to hydroxylamine and human serum albumin. Acidic pHs resulted in strong cleavage of the internal Schiff base, inducing the unfolding of MGLs, compared to neutral-alkaline pHs. At λ 280 nm excitation, both AfMGL and PpMGL have identical fluorescence emission spectra at λ 335 nm for the intrinsic tryptophan and λ 560 nm for the internal Schiff base. The maximum PLP tautomeric shift of ketoenamine to enolimine was detected at acidic pH causing complete enzyme unfolding, subunits dissociation and tautomeric shift of intrinsic PLP, rather than neutral-alkaline ones. The T m of AfMGL and PpMGL in presence of thermal stabilizer/ destabilizer was assayed by DSF. The T m of AfMGL and PpMGL was 73.1 °C and 74.4 °C, respectively, suggesting the higher proximity to the tertiary structure of both enzymes. The T m of AfMGL and PpMGL was slightly increased by trehalose and EDTA in contrast to guanidine HCl and urea. The active site and PLP-binding domains are identically conserved in both AfMGL and PpMGL.
- Published
- 2016
97. Aptamer‐Crosslinked Microbubbles: Smart Contrast Agents for Thrombin‐Activated Ultrasound Imaging
- Author
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Robert F. Mattrey, Andrew P. Goodwin, Sadik C. Esener, Jennifer N. Cha, and Matthew A. Nakatsuka
- Subjects
Materials science ,Aptamer ,Contrast Media ,Nanotechnology ,Article ,Thrombin ,medicine ,Animals ,General Materials Science ,Blood Coagulation ,Ultrasonography ,Microbubbles ,Blood clotting ,business.industry ,Mechanical Engineering ,Ultrasound ,Aptamers, Nucleotide ,medicine.disease ,Thrombosis ,Molecular Imaging ,Blood ,Cross-Linking Reagents ,Mechanics of Materials ,Ultrasound imaging ,Rabbits ,Molecular imaging ,business ,circulatory and respiratory physiology ,medicine.drug ,Biomedical engineering - Abstract
Thrombosis, or malignant blood clotting, is associated with numerous cardiovascular diseases and cancers. This report describes a microbubble contrast agent that produces ultrasound harmonic signal only when exposed to elevated thrombin levels. Silenced initially, microbubbles activated in the presence of both thrombin-spiked and freshly clotting blood in three minutes with detection limits of 20 nM thrombin and 2 aM microbubbles.
- Published
- 2012
98. Acoustic Droplet Vaporization and Propulsion of Perfluorocarbon-Loaded Microbullets for Targeted Tissue Penetration and Deformation
- Author
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Michael Benchimol, Sadik C. Esener, Daniel Kagan, Joseph Wang, Jonathan C. Claussen, and Erdembileg Chuluun-Erdene
- Subjects
Static Electricity ,Analytical chemistry ,Deformation (meteorology) ,Kidney ,complex mixtures ,Article ,Catalysis ,Drug Delivery Systems ,Vaporization ,Animals ,Ultrasonics ,Drug Carriers ,Fluorocarbons ,Acoustic droplet vaporization ,Sheep ,Chemistry ,business.industry ,Ultrasound ,technology, industry, and agriculture ,Kidney metabolism ,Acoustics ,General Chemistry ,General Medicine ,Solubility ,Targeted drug delivery ,Drug delivery ,Emulsions ,Volatilization ,Drug carrier ,business ,Biomedical engineering - Abstract
Acoustic droplet vaporization of perfluorocarbon-loaded microbullets triggered by an ultrasound pulse provides the necessary force to penetrate, cleave, and deform cellular tissue for potential targeted drug delivery and precision nanosurgery.
- Published
- 2012
99. Different Effect of Hydrogelation on Antifouling and Circulation Properties of Dextran–Iron Oxide Nanoparticles
- Author
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Ji-Ho Park, Erkki Ruoslahti, Michael J. Sailor, Ying Chao, Dmitri Simberg, Sadik C. Esener, and Priya Prakash Karmali
- Subjects
Biodistribution ,Iron oxide ,Pharmaceutical Science ,Nanoparticle ,Ferric Compounds ,complex mixtures ,Article ,Hydrogel, Polyethylene Glycol Dimethacrylate ,Mice ,chemistry.chemical_compound ,In vivo ,Drug Discovery ,Zeta potential ,Animals ,Iron Dextran Complex ,Kininogens ,technology, industry, and agriculture ,Dextrans ,Mice, Inbred C57BL ,chemistry ,Biochemistry ,Self-healing hydrogels ,Biophysics ,Nanoparticles ,Molecular Medicine ,Female ,Iron-Dextran Complex ,Iron oxide nanoparticles ,Protein Binding - Abstract
Premature recognition and clearance of nanoparticulate imaging and therapeutic agents by macrophages in the tissues can dramatically reduce both the nanoparticle half-life and delivery to the diseased tissue. Grafting nanoparticles with hydrogels prevents nanoparticulate recognition by liver and spleen macrophages and greatly prolongs circulation times in vivo. Understanding the mechanisms by which hydrogels achieve this "stealth" effect has implications for the design of long-circulating nanoparticles. Thus, the role of plasma protein absorption in the hydrogel effect is not yet understood. Short-circulating dextran-coated iron oxide nanoparticles could be converted into stealth hydrogel nanoparticles by cross-linking with 1-chloro-2,3-epoxypropane. We show that hydrogelation did not affect the size, shape and zeta potential, but completely prevented the recognition and clearance by liver macrophages in vivo. Hydrogelation decreased the number of hydroxyl groups on the nanoparticle surface and reduced the binding of the anti-dextran antibody. At the same time, hydrogelation did not reduce the absorption of cationic proteins on the nanoparticle surface. Specifically, there was no effect on the binding of kininogen, histidine-rich glycoprotein, and protamine sulfate to the anionic nanoparticle surface. In addition, hydrogelation did not prevent activation of plasma kallikrein on the metal oxide surface. These data suggest that (a) a stealth hydrogel coating does not mask charge interactions with iron oxide surface and (b) the total blockade of plasma protein absorption is not required for maintaining iron oxide nanoparticles' long-circulating stealth properties. These data illustrate a novel, clinically promising property of long-circulating stealth nanoparticles.
- Published
- 2012
100. Interfacing Massively Parallel Computers to Terabit Fiber Links
- Author
-
Esener, Sadik C., primary
- Published
- 1999
- Full Text
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