3,336 results on '"Riazuddin"'
Search Results
52. Exosome-Based Cell-Free Therapy in Regenerative Medicine for Myocardial Repair
- Author
-
Haider, Khawaja Husnain, Najimi, Mustapha, Riazuddin, SA, Section editor, and Haider, Khawaja Husnain, editor
- Published
- 2022
- Full Text
- View/download PDF
53. Vascular Functional Recovery and Reparation by Human Endothelial Progenitor Cells
- Author
-
Berezin, Alexander E., Berezin, Alexander A., Haider, Khawaja H., Section editor, Riazuddin, SA, Section editor, and Haider, Khawaja Husnain, editor
- Published
- 2022
- Full Text
- View/download PDF
54. Myoblast Therapies Constitute a Safe and Efficacious Platform Technology of Regenerative Medicine for the Human Health Industry
- Author
-
Law, Peter K., Li, Wenbin, Song, Qibin, Song, Shi Jun, Ren, Jun, Yao, Manye, Li, Qiaoyun, Shi, Qizhong, Wang, Keqiang, Wang, Jing, Ye, Lei, Ma, Jian-Hua, Haider, Khawaja Husnain, Su, Li-ping, Lu, Ping, Cheng, Weyland, Ao, Ming Zhang, Law, Danlin M., Haider, Khawaja H., Section editor, Riazuddin, SA, Section editor, and Haider, Khawaja Husnain, editor
- Published
- 2022
- Full Text
- View/download PDF
55. Neural Stem Cells : From Bench to Bedside
- Author
-
Parekh, Yash, Dagar, Ekta, Haider, Khawaja Husnain, Bokara, Kiran Kumar, Riazuddin, SA, Section editor, and Haider, Khawaja Husnain, editor
- Published
- 2022
- Full Text
- View/download PDF
56. Induced Pluripotent Stem Cells : Progress toward Clinical Translation from Bench to Bedside
- Author
-
Fakoya, Adegbenro Omotuyi John, Omole, Adekunle Ebenezer, Satyadev, Nihal, Haider, Khawaja Husnain, Riazuddin, SA, Section editor, and Haider, Khawaja Husnain, editor
- Published
- 2022
- Full Text
- View/download PDF
57. Glial Cells in Neuroinflammation in Various Disease States
- Author
-
Barthels, Derek, Das, Hiranmoy, Haider, Khawaja H., Section editor, Riazuddin, SA, Section editor, and Haider, Khawaja Husnain, editor
- Published
- 2022
- Full Text
- View/download PDF
58. Stem Cell Applications in Cardiac Tissue Regeneration
- Author
-
Sharma, Vineeta, Dash, Sanat Kumar, Gupta, Piyush Kumar, Zipporah, Binita E., Haider, Khawaja Husnain, Govarthanan, Kavitha, Haider, Khawaja H., Section editor, Riazuddin, SA, Section editor, and Haider, Khawaja Husnain, editor
- Published
- 2022
- Full Text
- View/download PDF
59. Adipose Tissue-Derived Regenerative Cell-Based Therapies: Current Optimization Strategies for Effective Treatment in Aesthetic Surgery
- Author
-
Shimizu, Yusuke, Ntege, Edward Hosea, Sunami, Hiroshi, Haider, Khawaja Husnain, Section editor, Riazuddin, SA, Section editor, and Haider, Khawaja Husnain, editor
- Published
- 2022
- Full Text
- View/download PDF
60. Biallelic in-frame deletion of SOX4 is associated with developmental delay, hypotonia and intellectual disability
- Author
-
Ghaffar, Amama, Rasheed, Faiza, Rashid, Muhammad, van Bokhoven, Hans, Ahmed, Zubair M., Riazuddin, Sheikh, and Riazuddin, Saima
- Published
- 2022
- Full Text
- View/download PDF
61. Mutation in the intracellular chloride channel CLCC1 associated with autosomal recessive retinitis pigmentosa.
- Author
-
Li, Lin, Jiao, Xiaodong, D'Atri, Ilaria, Ono, Fumihito, Nelson, Ralph, Chan, Chi-Chao, Nakaya, Naoki, Ma, Zhiwei, Ma, Yan, Cai, Xiaoying, Zhang, Longhua, Lin, Siying, Hameed, Abdul, Chioza, Barry A, Hardy, Holly, Arno, Gavin, Hull, Sarah, Khan, Muhammad Imran, Fasham, James, Harlalka, Gaurav V, Michaelides, Michel, Moore, Anthony T, Coban Akdemir, Zeynep Hande, Jhangiani, Shalini, Lupski, James R, Cremers, Frans PM, Qamar, Raheel, Salman, Ahmed, Chilton, John, Self, Jay, Ayyagari, Radha, Kabir, Firoz, Naeem, Muhammad Asif, Ali, Muhammad, Akram, Javed, Sieving, Paul A, Riazuddin, Sheikh, Baple, Emma L, Riazuddin, S Amer, Crosby, Andrew H, and Hejtmancik, J Fielding
- Subjects
Retina ,Cell Line ,Cytoplasm ,Animals ,Mice ,Knockout ,Zebrafish ,Humans ,Mice ,Retinitis Pigmentosa ,Chloride Channels ,Eye Proteins ,Homozygote ,Mutation ,Missense ,Asian Continental Ancestry Group ,Pakistan ,Retinal Rod Photoreceptor Cells ,Retinal Cone Photoreceptor Cells ,HEK293 Cells ,Neurodegenerative ,Eye Disease and Disorders of Vision ,Genetics ,Neurosciences ,Rare Diseases ,2.1 Biological and endogenous factors ,Eye ,Developmental Biology - Abstract
We identified a homozygous missense alteration (c.75C>A, p.D25E) in CLCC1, encoding a presumptive intracellular chloride channel highly expressed in the retina, associated with autosomal recessive retinitis pigmentosa (arRP) in eight consanguineous families of Pakistani descent. The p.D25E alteration decreased CLCC1 channel function accompanied by accumulation of mutant protein in granules within the ER lumen, while siRNA knockdown of CLCC1 mRNA induced apoptosis in cultured ARPE-19 cells. TALEN KO in zebrafish was lethal 11 days post fertilization. The depressed electroretinogram (ERG) cone response and cone spectral sensitivity of 5 dpf KO zebrafish and reduced eye size, retinal thickness, and expression of rod and cone opsins could be rescued by injection of wild type CLCC1 mRNA. Clcc1+/- KO mice showed decreased ERGs and photoreceptor number. Together these results strongly suggest that intracellular chloride transport by CLCC1 is a critical process in maintaining retinal integrity, and CLCC1 is crucial for survival and function of retinal cells.
- Published
- 2018
62. A mutation in IFT43 causes non-syndromic recessive retinal degeneration
- Author
-
Biswas, Pooja, Duncan, Jacque L, Ali, Muhammad, Matsui, Hiroko, Naeem, Muhammad Asif, Raghavendra, Pongali B, Frazer, Kelly A, Arts, Heleen H, Riazuddin, Sheikh, Akram, Javed, Hejtmancik, J Fielding, Riazuddin, S Amer, and Ayyagari, Radha
- Subjects
Biological Sciences ,Genetics ,Neurosciences ,Neurodegenerative ,Eye Disease and Disorders of Vision ,Clinical Research ,Aetiology ,2.1 Biological and endogenous factors ,Eye ,Base Sequence ,Carrier Proteins ,Consanguinity ,Exome ,Female ,Genes ,Recessive ,Homozygote ,Humans ,Male ,Mutation ,Pedigree ,Phenotype ,Retina ,Retinal Degeneration ,Exome Sequencing ,Medical and Health Sciences ,Genetics & Heredity - Abstract
The aim of this work is to identify the molecular cause of autosomal recessive early onset retinal degeneration in a consanguineous pedigree. Seventeen members of a four-generation Pakistani family were recruited and underwent a detailed ophthalmic examination. Exomes of four affected and two unaffected individuals were sequenced. Variants were filtered using exomeSuite to identify rare potentially pathogenic variants in genes expressed in the retina and/or brain and consistent with the pattern of inheritance. Effect of the variant observed in the gene Intraflagellar Transport Protein 43 (IFT43) was studied by heterologous expression in mIMCD3 and MDCK cells. Expression and sub-cellular localization of IFT43 in the retina and transiently transfected cells was examined by RT-PCR, western blot analysis, and immunohistochemistry. Affected members were diagnosed with early onset non-syndromic progressive retinal degeneration and the presence of bone spicules distributed throughout the retina at younger ages while the older affected members showed severe central choroidal atrophy. Whole-exome sequencing analysis identified a novel homozygous c.100 G > A change in IFT43 segregating with retinal degeneration and not present in ethnicity-matched controls. Immunostaining showed IFT43 localized in the photoreceptors, and to the tip of the cilia in transfected mIMCD3 and MDCK cells. The cilia in mIMCD3 and MDCK cells expressing mutant IFT43 were found to be significantly shorter (P
- Published
- 2017
63. Hydrogel patch with pretreated stem cells accelerates wound closure in diabetic rats
- Author
-
Andleeb, Anisa, Mehmood, Azra, Tariq, Muhammad, Butt, Hira, Ahmed, Rashid, Andleeb, Aneeta, Ghufran, Hafiz, Ramzan, Amna, Ejaz, Asim, Malik, Kausar, and Riazuddin, Sheikh
- Published
- 2022
- Full Text
- View/download PDF
64. The short synacthen test: Variations in methodology and protocols in KSA
- Author
-
Butt, Muhammad I., Alzuhayri, Nouf, Riazuddin, Muhammad, and Bakhsh, Abdulmohsen M.K.
- Published
- 2022
- Full Text
- View/download PDF
65. New insights into Perrault syndrome, a clinically and genetically heterogeneous disorder
- Author
-
Faridi, Rabia, Rea, Alessandro, Fenollar-Ferrer, Cristina, O’Keefe, Raymond T., Gu, Shoujun, Munir, Zunaira, Khan, Asma Ali, Riazuddin, Sheikh, Hoa, Michael, Naz, Sadaf, Newman, William G., and Friedman, Thomas B.
- Published
- 2022
- Full Text
- View/download PDF
66. Biallelic variants in TMEM222 cause a new autosomal recessive neurodevelopmental disorder
- Author
-
Polla, Daniel L., Farazi Fard, Mohammad Ali, Tabatabaei, Zahra, Habibzadeh, Parham, Levchenko, Olga A., Nikuei, Pooneh, Makrythanasis, Periklis, Hussain, Mureed, von Hardenberg, Sandra, Zeinali, Sirous, Fallah, Mohammad-Sadegh, Schuurs-Hoeijmakers, Janneke H. M., Shahzad, Mohsin, Fatima, Fareeha, Fatima, Neelam, Kaat, Laura Donker, Bruggenwirth, Hennie T., Fleming, Leah R., Condie, John, Ploski, Rafal, Pollak, Agnieszka, Pilch, Jacek, Demina, Nina A., Chukhrova, Alena L., Sergeeva, Vasilina S., Venselaar, Hanka, Masri, Amira T., Hamamy, Hanan, Santoni, Federico A., Linda, Katrin, Ahmed, Zubair M., Nadif Kasri, Nael, de Brouwer, Arjan P. M., Bergmann, Anke K., Hethey, Sven, Yavarian, Majid, Ansar, Muhammad, Riazuddin, Saima, Riazuddin, Sheikh, Silawi, Mohammad, Ruggeri, Gaia, Pirozzi, Filomena, Eftekhar, Ebrahim, Taghipour Sheshdeh, Afsaneh, Bahramjahan, Shima, Mirzaa, Ghayda M., Lavrov, Alexander V., Antonarakis, Stylianos E., Faghihi, Mohammad Ali, and van Bokhoven, Hans
- Published
- 2021
- Full Text
- View/download PDF
67. Homozygosity Mapping and Genetic Analysis of Autosomal Recessive Retinal Dystrophies in 144 Consanguineous Pakistani FamiliesPakistani RP Study
- Author
-
Li, Lin, Chen, Yabin, Jiao, Xiaodong, Jin, Chongfei, Jiang, Dan, Tanwar, Mukesh, Ma, Zhiwei, Huang, Li, Ma, Xiaoyin, Sun, Wenmin, Chen, Jianjun, Ma, Yan, M'hamdi, Oussama, Govindarajan, Gowthaman, Cabrera, Patricia E, Li, Jiali, Gupta, Nikhil, Naeem, Muhammad Asif, Khan, Shaheen N, Riazuddin, Sheikh, Akram, Javed, Ayyagari, Radha, Sieving, Paul A, Riazuddin, S Amer, and Hejtmancik, J Fielding
- Subjects
Brain Disorders ,Neurodegenerative ,Biotechnology ,Clinical Research ,Eye Disease and Disorders of Vision ,Genetics ,Aetiology ,2.1 Biological and endogenous factors ,Chromosome Mapping ,Consanguinity ,Female ,Genes ,Recessive ,Genetic Linkage ,Genetic Predisposition to Disease ,Genetic Testing ,Genetic Variation ,Haplotypes ,Homozygote ,Humans ,Male ,Microsatellite Repeats ,Pakistan ,Pedigree ,Retinal Dystrophies ,homozygosity mapping ,genetic analysis ,autosomal recessive retinal dystrophies ,consanguineous ,Biological Sciences ,Medical and Health Sciences ,Ophthalmology & Optometry - Abstract
PurposeThe Pakistan Punjab population has been a rich source for identifying genes causing or contributing to autosomal recessive retinal degenerations (arRD). This study was carried out to delineate the genetic architecture of arRD in the Pakistani population.MethodsThe genetic origin of arRD in a total of 144 families selected only for having consanguineous marriages and multiple members affected with arRD was examined. Of these, causative mutations had been identified in 62 families while only the locus had been identified for an additional 15. The remaining 67 families were subjected to homozygosity exclusion mapping by screening of closely flanking microsatellite markers at 180 known candidate genes/loci followed by sequencing of the candidate gene for pathogenic changes.ResultsOf these 67 families subjected to homozygosity mapping, 38 showed homozygosity for at least one of the 180 regions, and sequencing of the corresponding genes showed homozygous cosegregating mutations in 27 families. Overall, mutations were detected in approximately 61.8 % (89/144) of arRD families tested, with another 10.4% (15/144) being mapped to a locus but without a gene identified.ConclusionsThese results suggest the involvement of unmapped novel genes in the remaining 27.8% (40/144) of families. In addition, this study demonstrates that homozygosity mapping remains a powerful tool for identifying the genetic defect underlying genetically heterogeneous arRD disorders in consanguineous marriages for both research and clinical applications.
- Published
- 2017
68. Identification of rare missense variants in the BSN gene co‐segregating with chronic otitis media in a consanguineous Pakistani family.
- Author
-
Yousaf, Ayesha, Yousaf, Sairah, Shabbir, Asra S., Yousaf, Rafia, Riazuddin, Saima, Shaikh, Rehan S., Santos‐Cortez, Regie Lyn P., and Ahmed, Zubair M.
- Subjects
MIDDLE ear ,EAR infections ,OTITIS media ,AMINO acid residues ,GENETIC variation - Abstract
Background: Otitis media (OM) is the most frequent and complex middle ear condition with multifactorial etiology including genetic predisposition. OM depicts a variable clinical spectrum, leading to speech, developmental delay, and hearing loss. Here, we report the clinical and genetic findings of chronic suppurative otitis media (CSOM) segregating in a six‐generation consanguineous Pakistani family PKOM08. Methods: Clinical evaluations, including audio and tympanometry, were conducted to assess OM manifestation and their impact on hearing function. Exome sequencing was performed to identify potential genetic variants underlying CSOM in the study participants. Results: Clinical evaluation of participating individuals revealed varying degrees of disease severity, with mild to moderate hearing loss. All the affected individuals had CSOM with no other apparent comorbidity. Whole exome followed by Sanger sequencing revealed two rare heterozygous variants [c.1867C>T, p.(Pro623Ser) and c.11015G>A, p.(Arg3672Gln)] of BSN gene in most of the affected individuals of family PKOM08. BSN encodes a scaffold bassoon protein involved in synaptic vesicle trafficking. The identified variants replaced evolutionary conserved amino acid residues in the encoded protein and are predicted to impact the ionic interactions in the secondary structure. Conclusion: A deep intronic variant of BSN has been previously implicated in the etiology of childhood ear infections. Our study further supports a link between BSN‐impaired function and ear infection and CSOM in children. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
69. ADAMTS1, MPDZ, MVD, and SEZ6: candidate genes for autosomal recessive nonsyndromic hearing impairment
- Author
-
Bharadwaj, Thashi, Schrauwen, Isabelle, Rehman, Sakina, Liaqat, Khurram, Acharya, Anushree, Giese, Arnaud P. J., Nouel-Saied, Liz M., Nasir, Abdul, Everard, Jenna L., Pollock, Lana M., Zhu, Shaoyuan, Bamshad, Michael J., Nickerson, Deborah A., Ali, Raja Hussain, Ullah, Asmat, Wali, Abdul, Ali, Ghazanfar, Santos-Cortez, Regie Lyn P., Ahmed, Zubair M., McDermott, Jr., Brian M., Ansar, Muhammad, Riazuddin, Saima, Ahmad, Wasim, and Leal, Suzanne M.
- Published
- 2022
- Full Text
- View/download PDF
70. Identification of novel transcripts and peptides in developing murine lens.
- Author
-
Khan, Shahid Y, Ali, Muhammad, Kabir, Firoz, Chen, Ruiqiang, Na, Chan Hyun, Lee, Mei-Chong W, Pourmand, Nader, Hackett, Sean F, and Riazuddin, S Amer
- Subjects
Lens ,Crystalline ,Animals ,Mice ,Peptides ,Proteome ,RNA Splice Sites ,Chromatography ,Liquid ,Sequence Analysis ,RNA ,Alternative Splicing ,Organogenesis ,Pregnancy ,Introns ,Exons ,Algorithms ,Databases ,Genetic ,Female ,Tandem Mass Spectrometry ,High-Throughput Nucleotide Sequencing ,Transcriptome ,Chromatography ,Liquid ,Databases ,Genetic ,Lens ,Crystalline ,Sequence Analysis ,RNA - Abstract
We previously investigated the transcriptome and proteome profiles of the murine ocular lens at six developmental time points including two embryonic (E15 and E18) and four postnatal time points (P0, P3, P6, and P9). Here, we extend our analyses to identify novel transcripts and peptides in developing mouse lens. We identified a total of 9,707 novel transcripts and 325 novel fusion genes in developing mouse lens. Additionally, we identified 13,281 novel alternative splicing (AS) events in mouse lens including 6,990 exon skipping (ES), 2,447 alternative 3' splice site (A3SS), 1,900 alternative 5' splice site (A5SS), 1,771 mutually exclusive exons (MXE), and 173 intron retention (IR). Finally, we integrated our OMIC (Transcriptome and Proteome) datasets identifying 20 novel peptides in mouse lens. All 20 peptides were validated through matching MS/MS spectra of synthetic peptides. To the best of our knowledge, this is the first report integrating OMIC datasets to identify novel peptides in developing murine lens.
- Published
- 2018
71. IFT88 mutations identified in individuals with non-syndromic recessive retinal degeneration result in abnormal ciliogenesis
- Author
-
Chekuri, Anil, Guru, Aditya A, Biswas, Pooja, Branham, Kari, Borooah, Shyamanga, Soto-Hermida, Angel, Hicks, Michael, Khan, Naheed W, Matsui, Hiroko, Alapati, Akhila, Raghavendra, Pongali B, Roosing, Susanne, Sarangapani, Sripriya, Mathavan, Sinnakaruppan, Telenti, Amalio, Heckenlively, John R, Riazuddin, S Amer, Frazer, Kelly A, Sieving, Paul A, and Ayyagari, Radha
- Subjects
Eye Disease and Disorders of Vision ,Neurosciences ,Human Genome ,Genetics ,2.1 Biological and endogenous factors ,Aetiology ,Alleles ,CRISPR-Cas Systems ,Ciliopathies ,Female ,Gene Editing ,Genetic Predisposition to Disease ,HeLa Cells ,Homozygote ,Humans ,Male ,Middle Aged ,Mutation ,Pedigree ,Retina ,Retinal Degeneration ,Tumor Suppressor Proteins ,Whole Genome Sequencing ,Hela Cells ,Complementary and Alternative Medicine ,Paediatrics and Reproductive Medicine ,Genetics & Heredity - Abstract
Whole genome sequencing (WGS) was performed to identify the variants responsible for inherited retinal degeneration (IRD) in a Caucasian family. Segregation analysis of selected rare variants with pathogenic potential identified a set of compound heterozygous changes p.Arg266*:c.796C>T and p.Ala568Thr:c.1702G>A in the intraflagellar transport protein-88 (IFT88) gene segregating with IRD. Expression of IFT88 with the p.Arg266* and p.Ala568Thr mutations in mIMDC3 cells by transient transfection and in HeLa cells by introducing the mutations using CRISPR-cas9 system suggested that both mutations result in the formation of abnormal ciliary structures. The introduction of the IFT88 p.Arg266* variant in the homozygous state in HeLa cells by CRISPR-Cas9 genome-editing revealed that the mutant transcript undergoes nonsense-mediated decay leading to a significant depletion of IFT88 transcript. Additionally, abnormal ciliogenesis was observed in these cells. These observations suggest that the rare and unique combination of IFT88 alleles observed in this study provide insight into the physiological role of IFT88 in humans and the likely mechanism underlying retinal pathology in the pedigree with IRD.
- Published
- 2018
72. A missense allele of PEX5 is responsible for the defective import of PTS2 cargo proteins into peroxisomes
- Author
-
Ali, Muhammad, Khan, Shahid Y., Rodrigues, Tony A., Francisco, Tânia, Jiao, Xiaodong, Qi, Hang, Kabir, Firoz, Irum, Bushra, Rauf, Bushra, Khan, Asma A., Mehmood, Azra, Naeem, Muhammad Asif, Assir, Muhammad Zaman, Ali, Muhammad Hassaan, Shahzad, Mohsin, Abu-Amero, Khaled K., Akram, Shehla Javed, Akram, Javed, Riazuddin, Sheikh, Riazuddin, Saima, Robinson, Michael L., Baes, Myriam, Azevedo, Jorge E., Hejtmancik, J. Fielding, and Riazuddin, S. Amer
- Published
- 2021
- Full Text
- View/download PDF
73. Standardization of diethylnitrosamine-induced hepatocellular carcinoma rat model with time based molecular assessment
- Author
-
Ghufran, Hafiz, Azam, Maryam, Mehmood, Azra, Butt, Hira, and Riazuddin, Sheikh
- Published
- 2021
- Full Text
- View/download PDF
74. The role of CDHR3 in susceptibility to otitis media
- Author
-
Hirsch, Scott D., Elling, Christina L., Bootpetch, Tori C., Scholes, Melissa A., Hafrén, Lena, Streubel, Sven-Olrik, Pine, Harold S., Wine, Todd M., Szeremeta, Wasyl, Prager, Jeremy D., Einarsdottir, Elisabet, Yousaf, Ayesha, Baschal, Erin E., Rehman, Sakina, Bamshad, Michael J., Nickerson, Deborah A., Riazuddin, Saima, Leal, Suzanne M., Ahmed, Zubair M., Yoon, Patricia J., Kere, Juha, Chan, Kenny H., Mattila, Petri S., Friedman, Norman R., Chonmaitree, Tasnee, Frank, Daniel N., Ryan, Allen F., and Santos-Cortez, Regie Lyn P.
- Published
- 2021
- Full Text
- View/download PDF
75. A missense mutation in ASRGL1 is involved in causing autosomal recessive retinal degeneration
- Author
-
Biswas, Pooja, Chavali, Venkata Ramana Murthy, Agnello, Giulia, Stone, Everett, Chakarova, Christina, Duncan, Jacque L, Kannabiran, Chitra, Homsher, Melissa, Bhattacharya, Shomi S, Naeem, Muhammad Asif, Kimchi, Adva, Sharon, Dror, Iwata, Takeshi, Riazuddin, Shaikh, Reddy, G Bhanuprakash, Hejtmancik, J Fielding, Georgiou, George, Riazuddin, S Amer, and Ayyagari, Radha
- Subjects
Biological Sciences ,Bioinformatics and Computational Biology ,Genetics ,Eye Disease and Disorders of Vision ,Neurodegenerative ,Neurosciences ,Biotechnology ,Rare Diseases ,Aetiology ,2.1 Biological and endogenous factors ,Eye ,Adult ,Animals ,Asparaginase ,Autoantigens ,Disease Models ,Animal ,Exome ,Genetic Linkage ,Genetic Predisposition to Disease ,Humans ,Male ,Middle Aged ,Mutation ,Missense ,Pedigree ,Phenotype ,Retina ,Retinal Cone Photoreceptor Cells ,Retinal Degeneration ,Visual Acuity ,Zebrafish ,Medical and Health Sciences ,Genetics & Heredity - Abstract
Inherited retinal dystrophies are a group of genetically heterogeneous conditions with broad phenotypic heterogeneity. We analyzed a large five-generation pedigree with early-onset recessive retinal degeneration to identify the causative mutation. Linkage analysis and homozygosity mapping combined with exome sequencing were carried out to map the disease locus and identify the p.G178R mutation in the asparaginase like-1 gene (ASRGL1), segregating with the retinal dystrophy phenotype in the study pedigree. ASRGL1 encodes an enzyme that catalyzes the hydrolysis of L-asparagine and isoaspartyl-peptides. Studies on the ASRGL1 expressed in Escherichia coli and transiently transfected mammalian cells indicated that the p.G178R mutation impairs the autocatalytic processing of this enzyme resulting in the loss of functional ASRGL1 and leaving the inactive precursor protein as a destabilized and aggregation-prone protein. A zebrafish model overexpressing the mutant hASRGL1 developed retinal abnormalities and loss of cone photoreceptors. Our studies suggest that the p.G178R mutation in ASRGL1 leads to photoreceptor degeneration resulting in progressive vision loss.
- Published
- 2016
76. FOXE3 contributes to Peters anomaly through transcriptional regulation of an autophagy-associated protein termed DNAJB1.
- Author
-
Khan, Shahid Y, Vasanth, Shivakumar, Kabir, Firoz, Gottsch, John D, Khan, Arif O, Chaerkady, Raghothama, Lee, Mei-Chong W, Leitch, Carmen C, Ma, Zhiwei, Laux, Julie, Villasmil, Rafael, Khan, Shaheen N, Riazuddin, Sheikh, Akram, Javed, Cole, Robert N, Talbot, C Conover, Pourmand, Nader, Zaghloul, Norann A, Hejtmancik, J Fielding, and Riazuddin, S Amer
- Subjects
Lens ,Crystalline ,Epithelial Cells ,Animals ,Zebrafish ,Humans ,Corneal Opacity ,Eye Abnormalities ,Gene Expression Profiling ,Pedigree ,Gene Expression Regulation ,Family Health ,Autophagy ,Female ,Male ,HSP40 Heat-Shock Proteins ,Forkhead Transcription Factors ,Gene Knockdown Techniques ,HEK293 Cells ,Whole Exome Sequencing ,Eye Disease and Disorders of Vision ,Genetics ,2.1 Biological and endogenous factors ,Lens ,Crystalline ,MD Multidisciplinary - Abstract
FOXE3 is a lens-specific transcription factor that has been associated with anterior segment ocular dysgenesis. To determine the transcriptional target(s) of FOXE3 that are indispensable for the anterior segment development, we examined the transcriptome and the proteome of cells expressing truncated FOXE3 responsible for Peters anomaly identified through linkage-coupled next-generation whole-exome sequencing. We found that DNAJB1, an autophagy-associated protein, was the only candidate exhibiting differential expression in both screens. We confirmed the candidacy of DNAJB1 through chromatin immunoprecipitation and luciferase assays while knockdown of DNAJB1 in human lens epithelial cells resulted in a mitotic arrest. Subsequently, we targeted dnajb1a in zebrafish through injection of a splice-blocking morpholino. The dnajb1a morphants exhibited underdeveloped cataractous lenses with persistent apoptotic nuclei. In conclusion, here we report DNAJB1 is a transcriptional target of FOXE3 in a novel pathway that is crucial for the development of the anterior segment of the eye.
- Published
- 2016
77. Loss of function mutations in RP1 are responsible for retinitis pigmentosa in consanguineous familial cases.
- Author
-
Kabir, Firoz, Ullah, Inayat, Ali, Shahbaz, Gottsch, Alexander DH, Naeem, Muhammad Asif, Assir, Muhammad Zaman, Khan, Shaheen N, Akram, Javed, Riazuddin, Sheikh, Ayyagari, Radha, Hejtmancik, J Fielding, and Riazuddin, S Amer
- Subjects
Biomedical and Clinical Sciences ,Ophthalmology and Optometry ,Neurodegenerative ,Neurosciences ,Rare Diseases ,Clinical Research ,Genetics ,Eye Disease and Disorders of Vision ,Human Genome ,Aetiology ,2.1 Biological and endogenous factors ,Base Sequence ,Consanguinity ,DNA Mutational Analysis ,Electroretinography ,Exons ,Eye Proteins ,Female ,Genetic Linkage ,Genome-Wide Association Study ,Humans ,Lod Score ,Loss of Function Mutation ,Male ,Microtubule-Associated Proteins ,Mutation ,Pedigree ,Polymerase Chain Reaction ,Retinitis Pigmentosa ,Young Adult ,Opthalmology and Optometry ,Ophthalmology & Optometry ,Ophthalmology and optometry - Abstract
PurposeThis study was undertaken to identify causal mutations responsible for autosomal recessive retinitis pigmentosa (arRP) in consanguineous families.MethodsLarge consanguineous families were ascertained from the Punjab province of Pakistan. An ophthalmic examination consisting of a fundus evaluation and electroretinography (ERG) was completed, and small aliquots of blood were collected from all participating individuals. Genomic DNA was extracted from white blood cells, and a genome-wide linkage or a locus-specific exclusion analysis was completed with polymorphic short tandem repeats (STRs). Two-point logarithm of odds (LOD) scores were calculated, and all coding exons and exon-intron boundaries of RP1 were sequenced to identify the causal mutation.ResultsThe ophthalmic examination showed that affected individuals in all families manifest cardinal symptoms of RP. Genome-wide scans localized the disease phenotype to chromosome 8q, a region harboring RP1, a gene previously implicated in the pathogenesis of RP. Sanger sequencing identified a homozygous single base deletion in exon 4: c.3697delT (p.S1233Pfs22*), a single base substitution in intron 3: c.787+1G>A (p.I263Nfs8*), a 2 bp duplication in exon 2: c.551_552dupTA (p.Q185Yfs4*) and an 11,117 bp deletion that removes all three coding exons of RP1. These variations segregated with the disease phenotype within the respective families and were not present in ethnically matched control samples.ConclusionsThese results strongly suggest that these mutations in RP1 are responsible for the retinal phenotype in affected individuals of all four consanguineous families.
- Published
- 2016
78. Mutations in phosphodiesterase 6 identified in familial cases of retinitis pigmentosa
- Author
-
Ullah, Inayat, Kabir, Firoz, Gottsch, Clare Brooks S, Naeem, Muhammad Asif, Guru, Aditya A, Ayyagari, Radha, Khan, Shaheen N, Riazuddin, Sheikh, Akram, Javed, and Riazuddin, S Amer
- Subjects
Biological Sciences ,Genetics ,Eye Disease and Disorders of Vision ,Rare Diseases ,Neurodegenerative ,Neurosciences ,Human Genome ,Aetiology ,2.1 Biological and endogenous factors ,Eye - Abstract
To delineate the genetic determinants associated with retinitis pigmentosa (RP), a hereditary retinal disorder, we recruited four large families manifesting cardinal symptoms of RP. We localized these families to regions on the human genome harboring the α and β subunits of phosphodiesterase 6 and identified mutations that were absent in control chromosomes. Our data suggest that mutations in PDE6A and PDE6B are responsible for the retinal phenotype in these families.
- Published
- 2016
79. Pathogenic mutations in TULP1 responsible for retinitis pigmentosa identified in consanguineous familial cases.
- Author
-
Ullah, Inayat, Kabir, Firoz, Iqbal, Muhammad, Gottsch, Clare Brooks S, Naeem, Muhammad Asif, Assir, Muhammad Zaman, Khan, Shaheen N, Akram, Javed, Riazuddin, Sheikh, Ayyagari, Radha, Hejtmancik, J Fielding, and Riazuddin, S Amer
- Subjects
Biomedical and Clinical Sciences ,Ophthalmology and Optometry ,Rare Diseases ,Clinical Research ,Human Genome ,Genetic Testing ,Genetics ,Aetiology ,2.1 Biological and endogenous factors ,Adolescent ,Adult ,Alleles ,Base Sequence ,Child ,Chromosomes ,Human ,Pair 6 ,Computer Simulation ,Consanguinity ,Conserved Sequence ,DNA Mutational Analysis ,Eye Proteins ,Family ,Female ,Genetic Markers ,Haplotypes ,Humans ,Lod Score ,Male ,Microsatellite Repeats ,Middle Aged ,Mutation ,Pedigree ,Polymorphism ,Single Nucleotide ,RNA Splice Sites ,Retinitis Pigmentosa ,Young Adult ,Opthalmology and Optometry ,Ophthalmology & Optometry ,Ophthalmology and optometry - Abstract
PurposeTo identify pathogenic mutations responsible for autosomal recessive retinitis pigmentosa (arRP) in consanguineous familial cases.MethodsSeven large familial cases with multiple individuals diagnosed with retinitis pigmentosa were included in the study. Affected individuals in these families underwent ophthalmic examinations to document the symptoms and confirm the initial diagnosis. Blood samples were collected from all participating members, and genomic DNA was extracted. An exclusion analysis with microsatellite markers spanning the TULP1 locus on chromosome 6p was performed, and two-point logarithm of odds (LOD) scores were calculated. All coding exons along with the exon-intron boundaries of TULP1 were sequenced bidirectionally. We constructed a single nucleotide polymorphism (SNP) haplotype for the four familial cases harboring the K489R allele and estimated the likelihood of a founder effect.ResultsThe ophthalmic examinations of the affected individuals in these familial cases were suggestive of RP. Exclusion analyses confirmed linkage to chromosome 6p harboring TULP1 with positive two-point LOD scores. Subsequent Sanger sequencing identified the single base pair substitution in exon14, c.1466A>G (p.K489R), in four families. Additionally, we identified a two-base deletion in exon 4, c.286_287delGA (p.E96Gfs77*); a homozygous splice site variant in intron 14, c.1495+4A>C; and a novel missense variation in exon 15, c.1561C>T (p.P521S). All mutations segregated with the disease phenotype in the respective families and were absent in ethnically matched control chromosomes. Haplotype analysis suggested (p
- Published
- 2016
80. A Missense Variant in HACE1 Is Associated with Intellectual Disability, Epilepsy, Spasticity, and Psychomotor Impairment in a Pakistani Kindred.
- Author
-
Usmani, Muhammad A., Ghaffar, Amama, Shahzad, Mohsin, Akram, Javed, Majeed, Aisha I., Malik, Kausar, Fatima, Khushbakht, Khan, Asma A., Ahmed, Zubair M., Riazuddin, Sheikh, and Riazuddin, Saima
- Subjects
MISSENSE mutation ,INTELLECTUAL disabilities ,UBIQUITIN ligases ,SPASTICITY ,EPILEPSY - Abstract
Intellectual disability (ID), which affects around 2% to 3% of the population, accounts for 0.63% of the overall prevalence of neurodevelopmental disorders (NDD). ID is characterized by limitations in a person's intellectual and adaptive functioning, and is caused by pathogenic variants in more than 1000 genes. Here, we report a rare missense variant (c.350T>C; p.(Leu117Ser)) in HACE1 segregating with NDD syndrome with clinical features including ID, epilepsy, spasticity, global developmental delay, and psychomotor impairment in two siblings of a consanguineous Pakistani kindred. HACE1 encodes a HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 (HACE1), which is involved in protein ubiquitination, localization, and cell division. HACE1 is also predicted to interact with several proteins that have been previously implicated in the ID phenotype in humans. The p.(Leu117Ser) variant replaces an evolutionarily conserved residue of HACE1 and is predicted to be deleterious by various in silico algorithms. Previously, eleven protein truncating variants of HACE1 have been reported in individuals with NDD. However, to our knowledge, p.(Leu117Ser) is the second missense variant in HACE1 found in an individual with NDD. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
81. CIB2 regulates mTORC1 signaling and is essential for autophagy and visual function
- Author
-
Sethna, Saumil, Scott, Patrick A., Giese, Arnaud P. J., Duncan, Todd, Jian, Xiaoying, Riazuddin, Sheikh, Randazzo, Paul A., Redmond, T. Michael, Bernstein, Steven L., Riazuddin, Saima, and Ahmed, Zubair M.
- Published
- 2021
- Full Text
- View/download PDF
82. Biallelic MFSD2A variants associated with congenital microcephaly, developmental delay, and recognizable neuroimaging features
- Author
-
Scala, Marcello, Chua, Geok Lin, Chin, Cheen Fei, Alsaif, Hessa S., Borovikov, Artem, Riazuddin, Saima, Riazuddin, Sheikh, Chiara Manzini, M., Severino, Mariasavina, Kuk, Alvin, Fan, Hao, Jamshidi, Yalda, Toosi, Mehran Beiraghi, Doosti, Mohammad, Karimiani, Ehsan Ghayoor, Salpietro, Vincenzo, Dadali, Elena, Baydakova, Galina, Konovalov, Fedor, Lozier, Ekaterina, O’Connor, Emer, Sabr, Yasser, Alfaifi, Abdullah, Ashrafzadeh, Farah, Striano, Pasquale, Zara, Federico, Alkuraya, Fowzan S., Houlden, Henry, Maroofian, Reza, and Silver, David L.
- Published
- 2020
- Full Text
- View/download PDF
83. A Modern Introduction To Particle Physics (3rd Edition)
- Author
-
Fayyazuddin, . and Riazuddin, .
- Subjects
Physics ,Particle Physics/high Energy Physics, Quantum Fields ,Particle Physics/high Energy Physics ,Quantum Fields ,Textbook ,thema EDItEUR::P Mathematics and Science::PH Physics::PHV Applied physics::PHVB Astrophysics - Abstract
The book provides a comprehensive account of particle physics linking various aspects of particle physics in a coherent manner. This self-contained book not only cover basic concepts and recent developments but also overlaps between Astrophysics, Cosmology and Particle Physics, known as astroparticle physics. Several appendices are included to make the book self-contained.
- Published
- 2011
- Full Text
- View/download PDF
84. Mutations of human NARS2, encoding the mitochondrial asparaginyl-tRNA synthetase, cause nonsyndromic deafness and Leigh syndrome.
- Author
-
Simon, Mariella, Richard, Elodie M, Wang, Xinjian, Shahzad, Mohsin, Huang, Vincent H, Qaiser, Tanveer A, Potluri, Prasanth, Mahl, Sarah E, Davila, Antonio, Nazli, Sabiha, Hancock, Saege, Yu, Margret, Gargus, Jay, Chang, Richard, Al-Sheqaih, Nada, Newman, William G, Abdenur, Jose, Starr, Arnold, Hegde, Rashmi, Dorn, Thomas, Busch, Anke, Park, Eddie, Wu, Jie, Schwenzer, Hagen, Flierl, Adrian, Florentz, Catherine, Sissler, Marie, Khan, Shaheen N, Li, Ronghua, Guan, Min-Xin, Friedman, Thomas B, Wu, Doris K, Procaccio, Vincent, Riazuddin, Sheikh, Wallace, Douglas C, Ahmed, Zubair M, Huang, Taosheng, and Riazuddin, Saima
- Subjects
Mitochondria ,Fibroblasts ,Animals ,Humans ,Mice ,Deafness ,Leigh Disease ,Genetic Predisposition to Disease ,Aspartate-tRNA Ligase ,RNA ,Transfer ,Amino Acyl ,Pedigree ,Gene Expression ,Amino Acid Sequence ,Oxygen Consumption ,Mutation ,Missense ,Adult ,Middle Aged ,Female ,Ear ,Inner ,Male ,RNA ,Transfer ,Amino Acyl ,Mutation ,Missense ,Ear ,Inner ,Brain Disorders ,Genetics ,Neurodegenerative ,Rare Diseases ,Neurosciences ,2.1 Biological and endogenous factors ,Neurological ,Congenital Disorders ,Developmental Biology - Abstract
Here we demonstrate association of variants in the mitochondrial asparaginyl-tRNA synthetase NARS2 with human hearing loss and Leigh syndrome. A homozygous missense mutation ([c.637G>T; p.Val213Phe]) is the underlying cause of nonsyndromic hearing loss (DFNB94) and compound heterozygous mutations ([c.969T>A; p.Tyr323*] + [c.1142A>G; p.Asn381Ser]) result in mitochondrial respiratory chain deficiency and Leigh syndrome, which is a neurodegenerative disease characterized by symmetric, bilateral lesions in the basal ganglia, thalamus, and brain stem. The severity of the genetic lesions and their effects on NARS2 protein structure cosegregate with the phenotype. A hypothetical truncated NARS2 protein, secondary to the Leigh syndrome mutation p.Tyr323* is not detectable and p.Asn381Ser further decreases NARS2 protein levels in patient fibroblasts. p.Asn381Ser also disrupts dimerization of NARS2, while the hearing loss p.Val213Phe variant has no effect on NARS2 oligomerization. Additionally we demonstrate decreased steady-state levels of mt-tRNAAsn in fibroblasts from the Leigh syndrome patients. In these cells we show that a decrease in oxygen consumption rates (OCR) and electron transport chain (ETC) activity can be rescued by overexpression of wild type NARS2. However, overexpression of the hearing loss associated p.Val213Phe mutant protein in these fibroblasts cannot complement the OCR and ETC defects. Our findings establish lesions in NARS2 as a new cause for nonsyndromic hearing loss and Leigh syndrome.
- Published
- 2015
85. Splice-site mutations identified in PDE6A responsible for retinitis pigmentosa in consanguineous Pakistani families.
- Author
-
Khan, Shahid Y, Ali, Shahbaz, Naeem, Muhammad Asif, Khan, Shaheen N, Husnain, Tayyab, Butt, Nadeem H, Qazi, Zaheeruddin A, Akram, Javed, Riazuddin, Sheikh, Ayyagari, Radha, Hejtmancik, J Fielding, and Riazuddin, S Amer
- Subjects
Biomedical and Clinical Sciences ,Ophthalmology and Optometry ,Rare Diseases ,Clinical Research ,Eye Disease and Disorders of Vision ,Genetics ,Human Genome ,Aetiology ,2.1 Biological and endogenous factors ,Adult ,Chromosomes ,Human ,Pair 5 ,Consanguinity ,Cyclic Nucleotide Phosphodiesterases ,Type 6 ,DNA Mutational Analysis ,Eye Proteins ,Female ,Genes ,Recessive ,Genetic Markers ,Humans ,Lod Score ,Male ,Middle Aged ,Mutation ,Pakistan ,Pedigree ,RNA Splice Sites ,Retinitis Pigmentosa ,Young Adult ,Opthalmology and Optometry ,Ophthalmology & Optometry ,Ophthalmology and optometry - Abstract
PurposeThis study was conducted to localize and identify causal mutations associated with autosomal recessive retinitis pigmentosa (RP) in consanguineous familial cases of Pakistani origin.MethodsOphthalmic examinations that included funduscopy and electroretinography (ERG) were performed to confirm the affectation status. Blood samples were collected from all participating individuals, and genomic DNA was extracted. A genome-wide scan was performed, and two-point logarithm of odds (LOD) scores were calculated. Sanger sequencing was performed to identify the causative variants. Subsequently, we performed whole exome sequencing to rule out the possibility of a second causal variant within the linkage interval. Sequence conservation was performed with alignment analyses of PDE6A orthologs, and in silico splicing analysis was completed with Human Splicing Finder version 2.4.1.ResultsA large multigenerational consanguineous family diagnosed with early-onset RP was ascertained. An ophthalmic clinical examination consisting of fundus photography and electroretinography confirmed the diagnosis of RP. A genome-wide scan was performed, and suggestive two-point LOD scores were observed with markers on chromosome 5q. Haplotype analyses identified the region; however, the region did not segregate with the disease phenotype in the family. Subsequently, we performed a second genome-wide scan that excluded the entire genome except the chromosome 5q region harboring PDE6A. Next-generation whole exome sequencing identified a splice acceptor site mutation in intron 16: c.2028-1G>A, which was completely conserved in PDE6A orthologs and was absent in ethnically matched 350 control chromosomes, the 1000 Genomes database, and the NHLBI Exome Sequencing Project. Subsequently, we investigated our entire cohort of RP familial cases and identified a second family who harbored a splice acceptor site mutation in intron 10: c.1408-2A>G. In silico analysis suggested that these mutations will result in the elimination of wild-type splice acceptor sites that would result in either skipping of the respective exon or the creation of a new cryptic splice acceptor site; both possibilities would result in retinal photoreceptor cells that lack PDE6A wild-type protein.Conclusionswe report two splice acceptor site variations in PDE6A in consanguineous Pakistani families who manifested cardinal symptoms of RP. Taken together with our previously published work, our data suggest that mutations in PDE6A account for about 2% of the total genetic load of RP in our cohort and possibly in the Pakistani population as well.
- Published
- 2015
86. Mutations in GRM6 identified in consanguineous Pakistani families with congenital stationary night blindness.
- Author
-
Naeem, Muhammad Asif, Gottsch, Alexander DH, Ullah, Inayat, Khan, Shaheen N, Husnain, Tayyab, Butt, Nadeem H, Qazi, Zaheeruddin A, Akram, Javed, Riazuddin, Sheikh, Ayyagari, Radha, Hejtmancik, J Fielding, and Riazuddin, S Amer
- Subjects
Biomedical and Clinical Sciences ,Ophthalmology and Optometry ,Clinical Research ,Genetics ,Aetiology ,2.1 Biological and endogenous factors ,Adult ,Aged ,Amino Acid Sequence ,Animals ,Base Sequence ,Chromosomes ,Human ,Pair 5 ,Consanguinity ,Electroretinography ,Exons ,Eye Diseases ,Hereditary ,Female ,Gene Expression ,Genes ,Recessive ,Genetic Diseases ,X-Linked ,Homozygote ,Humans ,Male ,Molecular Sequence Data ,Mutation ,Myopia ,Night Blindness ,Pakistan ,Pedigree ,Receptors ,Glutamate ,Sequence Alignment ,Sequence Analysis ,DNA ,Opthalmology and Optometry ,Ophthalmology & Optometry ,Ophthalmology and optometry - Abstract
PurposeThis study was undertaken to investigate the causal mutations responsible for autosomal recessive congenital stationary night blindness (CSNB) in consanguineous Pakistani families.MethodsTwo consanguineous families with multiple individuals manifesting symptoms of stationary night blindness were recruited. Affected individuals underwent a detailed ophthalmological examination, including fundus examination and electroretinography. Blood samples were collected and genomic DNA was extracted. Exclusion analyses were completed by genotyping closely spaced microsatellite markers, and two-point logarithm of odds (LOD) scores were calculated. All coding exons, along with the exon-intron boundaries of GRM6, were sequenced bidirectionally.ResultsAccording to the medical history available to us, affected individuals in both families had experienced night blindness from the early years of their lives. Fundus photographs of affected individuals in both the families appeared normal, with no signs of attenuated arteries or bone spicule pigmentation. The scotopic electroretinogram (ERG) response were absent in all of the affected individuals, while the photopic measurements show reduced b-waves. During exclusion analyses, both families localized to a region on chromosome 5q that harbors GRM6, a gene previously associated with autosomal recessive CSNB. Bidirectional sequencing of GRM6 identified homozygous single base pair changes, specifically c.1336C>T (p.R446X) and c.2267G>A (p.G756D) in families PKRP170 and PKRP172, respectively.ConclusionsWe identified a novel nonsense and a previously reported missense mutation in GRM6 that were responsible for autosomal recessive CSNB in patients of Pakistani decent.
- Published
- 2015
87. Investigating the Molecular Basis of Retinal Degeneration in a Familial Cohort of Pakistani Decent by Exome Sequencing.
- Author
-
Maranhao, Bruno, Biswas, Pooja, Gottsch, Alexander DH, Navani, Mili, Naeem, Muhammad Asif, Suk, John, Chu, Justin, Khan, Sheen N, Poleman, Rachel, Akram, Javed, Riazuddin, Sheikh, Lee, Pauline, Riazuddin, S Amer, Hejtmancik, J Fielding, and Ayyagari, Radha
- Subjects
Fundus Oculi ,Humans ,Retinal Degeneration ,Eye Proteins ,RNA ,Messenger ,Electroretinography ,Pedigree ,Sequence Alignment ,Sequence Analysis ,RNA ,Age of Onset ,Consanguinity ,Genotype ,Genes ,Recessive ,Phenotype ,Mutation ,Polymorphism ,Single Nucleotide ,Ethnic Groups ,Pakistan ,Female ,Male ,Genetic Association Studies ,Exome ,RNA ,Messenger ,Sequence Analysis ,Genes ,Recessive ,Polymorphism ,Single Nucleotide ,General Science & Technology - Abstract
PurposeTo define the molecular basis of retinal degeneration in consanguineous Pakistani pedigrees with early onset retinal degeneration.MethodsA cohort of 277 individuals representing 26 pedigrees from the Punjab province of Pakistan was analyzed. Exomes were captured with commercial kits and sequenced on an Illumina HiSeq 2500. Candidate variants were identified using standard tools and analyzed using exomeSuite to detect all potentially pathogenic changes in genes implicated in retinal degeneration. Segregation analysis was performed by dideoxy sequencing and novel variants were additionally investigated for their presence in ethnicity-matched controls.ResultsWe identified a total of nine causal mutations, including six novel variants in RPE65, LCA5, USH2A, CNGB1, FAM161A, CERKL and GUCY2D as the underlying cause of inherited retinal degenerations in 13 of 26 pedigrees. In addition to the causal variants, a total of 200 variants each observed in five or more unrelated pedigrees investigated in this study that were absent from the dbSNP, HapMap, 1000 Genomes, NHLBI ESP6500, and ExAC databases were identified, suggesting that they are common in, and unique to the Pakistani population.ConclusionsWe identified causal mutations associated with retinal degeneration in nearly half of the pedigrees investigated in this study through next generation whole exome sequencing. All novel variants detected in this study through exome sequencing have been cataloged providing a reference database of variants common in, and unique to the Pakistani population.
- Published
- 2015
88. Identification of Novel Deletions as the Underlying Cause of Retinal Degeneration in Two Pedigrees
- Author
-
Branham, Kari, Guru, Aditya A., Kozak, Igor, Biswas, Pooja, Othman, Mohammad, Kishaba, Kameron, Mansoor, Hassan, Riazuddin, Sheikh, Heckenlively, John R., Riazuddin, S. Amer, Hejtmancik, J. Fielding, Sieving, Paul A., Ayyagari, Radha, COHEN, IRUN R., Series Editor, LAJTHA, ABEL, Series Editor, LAMBRIS, JOHN D., Series Editor, PAOLETTI, RODOLFO, Series Editor, REZAEI, NIMA, Series Editor, Ash, John D., editor, Anderson, Robert E., editor, LaVail, Matthew M., editor, Bowes Rickman, Catherine, editor, Hollyfield, Joe G., editor, and Grimm, Christian, editor
- Published
- 2018
- Full Text
- View/download PDF
89. Whole-Exome Sequencing Identifies Novel Variants that Co-segregates with Autosomal Recessive Retinal Degeneration in a Pakistani Pedigree
- Author
-
Biswas, Pooja, Naeem, Muhammad Asif, Ali, Muhammad Hassaan, Assir, Muhammad Zaman, Khan, Shaheen N., Riazuddin, Sheikh, Hejtmancik, J. Fielding, Riazuddin, S. Amer, Ayyagari, Radha, COHEN, IRUN R., Series Editor, LAJTHA, ABEL, Series Editor, LAMBRIS, JOHN D., Series Editor, PAOLETTI, RODOLFO, Series Editor, REZAEI, NIMA, Series Editor, Ash, John D., editor, Anderson, Robert E., editor, LaVail, Matthew M., editor, Bowes Rickman, Catherine, editor, Hollyfield, Joe G., editor, and Grimm, Christian, editor
- Published
- 2018
- Full Text
- View/download PDF
90. Deafness DFNB128 Associated with a Recessive Variant of Human MAP3K1 Recapitulates Hearing Loss of Map3k1 -Deficient Mice.
- Author
-
Faridi, Rabia, Yousaf, Rizwan, Inagaki, Sayaka, Olszewski, Rafal, Gu, Shoujun, Morell, Robert J., Wilson, Elizabeth, Xia, Ying, Qaiser, Tanveer Ahmed, Rashid, Muhammad, Fenollar-Ferrer, Cristina, Hoa, Michael, Riazuddin, Sheikh, and Friedman, Thomas B.
- Subjects
SEX differentiation disorders ,DEAFNESS ,GENE expression ,INNER ear ,HEARING disorders - Abstract
Deafness in vertebrates is associated with variants of hundreds of genes. Yet, many mutant genes causing rare forms of deafness remain to be discovered. A consanguineous Pakistani family segregating nonsyndromic deafness in two sibships were studied using microarrays and exome sequencing. A 1.2 Mb locus (DFNB128) on chromosome 5q11.2 encompassing six genes was identified. In one of the two sibships of this family, a novel homozygous recessive variant NM_005921.2:c.4460G>A p.(Arg1487His) in the kinase domain of MAP3K1 co-segregated with nonsyndromic deafness. There are two previously reported Map3k1-kinase-deficient mouse models that are associated with recessively inherited syndromic deafness. MAP3K1 phosphorylates serine and threonine and functions in a signaling pathway where pathogenic variants of HGF, MET, and GAB1 were previously reported to be associated with human deafness DFNB39, DFNB97, and DFNB26, respectively. Our single-cell transcriptome data of mouse cochlea mRNA show expression of Map3k1 and its signaling partners in several inner ear cell types suggesting a requirement of wild-type MAP3K1 for normal hearing. In contrast to dominant variants of MAP3K1 associated with Disorders of Sex Development 46,XY sex-reversal, our computational modeling of the recessive substitution p.(Arg1487His) predicts a subtle structural alteration in MAP3K1, consistent with the limited phenotype of nonsyndromic deafness. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
91. Curcumin preconditioned human adipose derived stem cells co-transplanted with platelet rich plasma improve wound healing in diabetic rats
- Author
-
Ghufran, Hafiz, Mehmood, Azra, Azam, Maryam, Butt, Hira, Ramzan, Amna, Yousaf, Muhammad Amin, Ejaz, Asim, Tarar, Moazzam N., and Riazuddin, Sheikh
- Published
- 2020
- Full Text
- View/download PDF
92. Generation and proteome profiling of PBMC-originated, iPSC-derived lentoid bodies
- Author
-
Ali, Muhammad, Kabir, Firoz, Raskar, Snehal, Renuse, Santosh, Na, Chan Hyun, Delannoy, Michael, Khan, Shahid Y., and Riazuddin, S. Amer
- Published
- 2020
- Full Text
- View/download PDF
93. Temperature Dependent Liquid State Properties of Transition Metal Co: An Orbital Free Dft Calculation
- Author
-
Riazuddin Molla, Mohammad, primary, Bhuiyan, G. M., additional, Afrin, Sadia, additional, and Ahmed, Abu Zafur Ziauddin, additional
- Published
- 2024
- Full Text
- View/download PDF
94. Determinants of anxiety and depression among type 2 diabetes mellitus patients: A hospital-based study in Bangladesh amid the COVID-19 pandemic
- Author
-
Hossen, Md. Toufik, primary, Shuvo, Suvasish Das, additional, Mazumdar, Sanaullah, additional, Hossain, Md. Sakhawot, additional, Riazuddin, Md., additional, Roy, Deepa, additional, Mondal, Bappa Kumar, additional, Parvin, Rashida, additional, Paul, Dipak Kumar, additional, and Adnan, Md. Moshiuzzaman, additional
- Published
- 2024
- Full Text
- View/download PDF
95. exomeSuite: Whole exome sequence variant filtering tool for rapid identification of putative disease causing SNVs/indels
- Author
-
Maranhao, B, Biswas, P, Duncan, JL, Branham, KE, Silva, GA, Naeem, MA, Khan, SN, Riazuddin, S, Hejtmancik, JF, Heckenlively, JR, Riazuddin, SA, Lee, PL, and Ayyagari, R
- Subjects
Human Genome ,Genetics ,2.1 Biological and endogenous factors ,Aetiology ,Alleles ,DNA Mutational Analysis ,Datasets as Topic ,Exome ,Female ,Genetic Diseases ,Inborn ,Genome-Wide Association Study ,Heterozygote ,Homozygote ,Humans ,INDEL Mutation ,Male ,Pedigree ,Polymorphism ,Single Nucleotide ,Software ,Filtering ,Mendelian disease ,Homozygosity mapping ,Information Systems ,Genetics & Heredity - Abstract
Exome and whole-genome analyses powered by next-generation sequencing (NGS) have become invaluable tools in identifying causal mutations responsible for Mendelian disorders. Given that individual exomes contain several thousand single nucleotide variants and insertions/deletions, it remains a challenge to analyze large numbers of variants from multiple exomes to identify causal alleles associated with inherited conditions. To this end, we have developed user-friendly software that analyzes variant calls from multiple individuals to facilitate identification of causal mutations. The software, termed exomeSuite, filters for putative causative variants of monogenic diseases inherited in one of three forms: dominant, recessive caused by a homozygous variant, or recessive caused by two compound heterozygous variants. In addition, exomeSuite can perform homozygosity mapping and analyze the variant data of multiple unrelated individuals. Here we demonstrate that filtering of variants with exomeSuite reduces datasets to a fraction of a percent of their original size. To the best of our knowledge this is the first freely available software developed to analyze variant data from multiple individuals that rapidly assimilates and filters large data sets based on pattern of inheritance.
- Published
- 2014
96. AIPL1 implicated in the pathogenesis of two cases of autosomal recessive retinal degeneration.
- Author
-
Li, David, Jin, Chongfei, Jiao, Xiaodong, Li, Lin, Bushra, Tahmina, Naeem, Muhammad Asif, Butt, Nadeem H, Husnain, Tayyab, Sieving, Paul A, Riazuddin, Sheikh, Riazuddin, S Amer, and Hejtmancik, J Fielding
- Subjects
Fundus Oculi ,Chromosomes ,Human ,Pair 17 ,Humans ,Retinal Degeneration ,Adaptor Proteins ,Signal Transducing ,Carrier Proteins ,Eye Proteins ,RNA Splice Sites ,Electroretinography ,Pedigree ,Family ,Amino Acid Sequence ,Protein Structure ,Tertiary ,Haplotypes ,Genes ,Recessive ,Lod Score ,Mutation ,Molecular Sequence Data ,Adult ,Middle Aged ,Pakistan ,Female ,Male ,Chromosomes ,Human ,Pair 17 ,Adaptor Proteins ,Signal Transducing ,Protein Structure ,Tertiary ,Genes ,Recessive ,Opthalmology and Optometry ,Ophthalmology & Optometry - Abstract
PurposeTo localize and identify the gene and mutations causing autosomal recessive retinal dystrophy in two consanguineous Pakistani families.MethodsConsanguineous families from Pakistan were ascertained to be affected with autosomal recessive retinal degeneration. All affected individuals underwent thorough ophthalmologic examinations. Blood samples were collected, and genomic DNA was extracted using a salting out procedure. Genotyping was performed using microsatellite markers spaced at approximately 10 cM intervals. Two-point linkage analysis was performed with the lod score method. Direct DNA sequencing of amplified genomic DNA was performed for mutation screening of candidate genes.ResultsGenome-wide linkage scans yielded a lod score of 3.05 at θ=0 for D17S1832 and 3.82 at θ=0 for D17S938, localizing the disease gene to a 12.22 cM (6.64 Mb) region flanked by D17S1828 and D17S1852 for family 61032 and family 61227, which contains aryl hydrocarbon receptor interacting protein-like 1 (AIPL1), a gene previously implicated in recessive Leber congenital amaurosis and autosomal dominant cone-rod dystrophy. Sequencing of AIPL1 showed a homozygous c.773G>C (p.Arg258Pro) sequence change in all affected individuals of family 61032 and a homozygous c.465G>T (p.(H93_Q155del)) change in all affected members of family 61227.ConclusionsThe results strongly suggest that the c.773G>C (p.R258P) and c.465G>T (p.(H93_Q155del)) mutations in AIPL1 cause autosomal recessive retinal degeneration in these consanguineous Pakistani families.
- Published
- 2014
97. Navigating the Spectrum: Atypical Pulmonary Involvement in Immunoglobulin G4-Related Disease
- Author
-
Riazuddin, Muhammad, primary, Ali, Maha, additional, Alageel, Dalal F, additional, Gheith, Mais W, additional, Ali, Saad S, additional, Farouk, Noha I, additional, Sabbah, Belal N, additional, Ali Sheikh, Aamir Nadeem M, additional, and Alkattan, Khaled, additional
- Published
- 2023
- Full Text
- View/download PDF
98. Novel loss-of-function mutations in COCH cause autosomal recessive nonsyndromic hearing loss
- Author
-
Booth, Kevin T., Ghaffar, Amama, Rashid, Muhammad, Hovey, Luke T., Hussain, Mureed, Frees, Kathy, Renkes, Erika M., Nishimura, Carla J., Shahzad, Mohsin, Smith, Richard J., Ahmed, Zubair, Azaiez, Hela, and Riazuddin, Saima
- Published
- 2020
- Full Text
- View/download PDF
99. Identification and computational analysis of USH1C, and SLC26A4 variants in Pakistani families with prelingual hearing loss
- Author
-
Noman, Muhammad, Bukhari, Shazia A., Rehman, Sakina, Qasim, Muhammad, Ali, Muhammad, Riazuddin, Saima, and Ahmed, Zubair M.
- Published
- 2020
- Full Text
- View/download PDF
100. Knowledge, attitudes, practices, and its associated factors toward COVID-19 pandemic among Bangladeshi older adults.
- Author
-
Deepa Roy, Suvasish Das Shuvo, Md Sakhawot Hossain, Md Riazuddin, Sanaullah Mazumdar, Bappa Kumar Mondal, and Md Ashrafuzzaman Zahid
- Subjects
Medicine ,Science - Abstract
BackgroundThe newly emerged COVID-19 has an unprecedented impact on all classes of people, particularly the elderly. The knowledge, attitudes, and practices (KAP) of older adults toward COVID-19 are currently unknown. This study aimed to investigate the KAP and its associated factors toward COVID-19 among older adults in Bangladesh.MethodsA cross-sectional survey was conducted from April to May 2021 among Bangladeshi older adults. Face-to-face interviews were used to collect data from five selected divisions in Bangladesh using simple random sampling. The questionnaire consisted of socio-demographic characteristics, disease conditions, and KAP toward COVID-19. Descriptive statistics, t-tests, one-way analysis of variance (ANOVA), and logistic regression analyses were performed.ResultsOut of 900 respondents, the majority of older adults (82.9%) indicated that COVID-19 is a viral disease and the major clinical symptom of COVID-19 (86.5%). Only 22.1% of participants always washed their hands with soap or hand sanitizer, and 27.6% wore a mask to protect against the virus when going outside the home. Overall, 55.2% had adequate knowledge, 50.2% had positive attitudes toward COVID-19 and only 22.7% had good practices. Out of 30 scores, mean score values were 20.8±6.7 in the knowledge section, 21.2±4.3 in the attitude section, and 11.3±6.7 in the practice section out of 30. In binary logistic regression analysis, factors associated with poor knowledge, and practices were being male, aged >70 years, having a primary education, less income ConclusionThe findings highlight the need for immediate implementation of health education programs and adequate intervention programs for COVID-19 which integrates consideration of associated factors to improve the level of older adults' knowledge, attitudes, and practices.
- Published
- 2022
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.