2,425 results on '"Rawson P"'
Search Results
52. Applying data technologies to combat AMR: current status, challenges, and opportunities on the way forward
- Author
-
Chindelevitch, Leonid, Jauneikaite, Elita, Wheeler, Nicole E., Allel, Kasim, Ansiri-Asafoakaa, Bede Yaw, Awuah, Wireko A., Bauer, Denis C., Beisken, Stephan, Fan, Kara, Grant, Gary, Graz, Michael, Khalaf, Yara, Liyanapathirana, Veranja, Montefusco-Pereira, Carlos, Mugisha, Lawrence, Naik, Atharv, Nanono, Sylvia, Nguyen, Anthony, Rawson, Timothy, Reddy, Kessendri, Ruzante, Juliana M., Schmider, Anneke, Stocker, Roman, Unruh, Leonhardt, Waruingi, Daniel, Graz, Heather, and van Dongen, Maarten
- Subjects
Computer Science - Computers and Society ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning ,Statistics - Applications ,I.2.1 ,J.3 - Abstract
Antimicrobial resistance (AMR) is a growing public health threat, estimated to cause over 10 million deaths per year and cost the global economy 100 trillion USD by 2050 under status quo projections. These losses would mainly result from an increase in the morbidity and mortality from treatment failure, AMR infections during medical procedures, and a loss of quality of life attributed to AMR. Numerous interventions have been proposed to control the development of AMR and mitigate the risks posed by its spread. This paper reviews key aspects of bacterial AMR management and control which make essential use of data technologies such as artificial intelligence, machine learning, and mathematical and statistical modelling, fields that have seen rapid developments in this century. Although data technologies have become an integral part of biomedical research, their impact on AMR management has remained modest. We outline the use of data technologies to combat AMR, detailing recent advancements in four complementary categories: surveillance, prevention, diagnosis, and treatment. We provide an overview on current AMR control approaches using data technologies within biomedical research, clinical practice, and in the "One Health" context. We discuss the potential impact and challenges wider implementation of data technologies is facing in high-income as well as in low- and middle-income countries, and recommend concrete actions needed to allow these technologies to be more readily integrated within the healthcare and public health sectors., Comment: 65 pages, 3 figures
- Published
- 2022
53. Renormalized Sparse Neural Network Pruning
- Author
-
Rawson, Michael G.
- Subjects
Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
Large neural networks are heavily over-parameterized. This is done because it improves training to optimality. However once the network is trained, this means many parameters can be zeroed, or pruned, leaving an equivalent sparse neural network. We propose renormalizing sparse neural networks in order to improve accuracy. We prove that our method's error converges to zero as network parameters cluster or concentrate. We prove that without renormalizing, the error does not converge to zero in general. We experiment with our method on real world datasets MNIST, Fashion MNIST, and CIFAR-10 and confirm a large improvement in accuracy with renormalization versus standard pruning.
- Published
- 2022
54. Micropyramid-patterned, oxygen-permeable bottomed dish for high density culture of pancreatic islets
- Author
-
Myrick, Ryan J, Shang, Kuang-Ming, Betts, Jonathan F, Gonzalez, Nelson, Rawson, Jeffrey, Izumi, Kenji, Koba, Naoya, Tsuchiya, Takanori, Kato, Hiroyuki, Omori, Keiko, Kandeel, Fouad, Mullen, Yoko, Tai, Yu-Chong, Botvinick, Elliot, and Komatsu, Hirotake
- Subjects
Engineering ,Biomedical Engineering ,Digestive Diseases ,Autoimmune Disease ,Transplantation ,Diabetes ,Metabolic and endocrine ,Mice ,Animals ,Oxygen ,Diabetes Mellitus ,Experimental ,Islets of Langerhans ,Islets of Langerhans Transplantation ,Hypoxia ,spheroid culture ,micropatterned dish ,pancreatic islets ,3D spheroid ,high seeding density culture ,Medical Biotechnology ,Other Technology ,Medical biotechnology ,Biomedical engineering - Abstract
The need for maintaining cell-spheroid viability and function within high-density cultures is unmet for various clinical and experimental applications, including cell therapies. One immediate application is for transplantation of pancreatic islets, a clinically recognized treatment option to cure type 1 diabetes; islets are isolated from a donor for subsequent culture prior to transplantation. However, high seeding conditions cause unsolicited fusion of multiple spheroids, thereby limiting oxygen diffusion to induce hypoxic cell death. Here we introduce a culture dish incorporating a micropyramid-patterned surface to prevent the unsolicited fusion and oxygen-permeable bottom for optimal oxygen environment. A 400µm-thick, oxygen-permeable polydimethylsiloxane sheet topped with micropyramid pattern of 400µm-base and 200µm-height was fabricated to apply to the 24-well plate format. The micropyramid pattern separated the individual pancreatic islets to prevent the fusion of multiple islets. This platform supported the high oxygen demand of islets at high seeding density at 260 islet equivalents cm-2, a 2-3-fold higher seeding density compared to the conventional islet culture used in a preparation for the clinical islet transplantations, demonstrating improved islet morphology, metabolism and function in a 4 d-culture. Transplantation of these islets into immunodeficient diabetic mice exhibited significantly improved engraftment to achieve euglycemia compared to islets cultured in the conventional culture wells. Collectively, this simple design modification allows for high-density cultures of three-dimensional cell spheroids to improve the viability and function for an array of investigational and clinical replacement tissues.
- Published
- 2023
55. Single-step Optimization in Triaging Large Vessel Occlusion Strokes: Identifying Factors to Improve Door-to-groin Time for Endovascular Therapy
- Author
-
Rawson, Joshua, Petrone, Ashley, and Adcock, Amelia
- Subjects
Stroke ,EMS triage ,Large vessel occlusion - Abstract
Introduction: Although acute stroke endovascular therapy (EVT) has dramatically improved outcomes in acute ischemic stroke (AIS) patients with large vessel occlusions (LVO), access to EVT-capable centers remains limited, particularly in rural areas. Therefore, it is essential to optimize triage systems for EVT-eligible patients. One strategy may be the use of a telestroke network that typically consists of multiple spoke sites that receive a consultation to determine appropriateness of patient transfer to an EVT-capable hub site. Standardization of AIS protocols may be necessary to achieve target door-to groin (DTG) times of less than 60 minutes in EVT-eligible patients upon hub arrival. Specifically, the decision to obtain vascular imaging at the transferring hub site vs delaying until arrival at the hub is controversial. The purpose of this study was to identify factors associated with reduced DTG time in LVO-AIS patients.Methods: We performed a retrospective chart review for all patients treated over a 3.5-year period at our home hub institution. Patients were classified as telestroke transfers, non-telestroke transfers, and direct-to-hub presentations.Werecorded demographic information, DTG time, reperfusion status, length of stay (LOS), functional status at discharge, seven-day mortality, and the site where vascular imaging—computed tomography angiography (CTA)—was obtained. We performed binary logistic regression to identify factors associated with DTG
- Published
- 2023
56. Wireless electrical–molecular quantum signalling for cancer cell apoptosis
- Author
-
Jain, Akhil, Gosling, Jonathan, Liu, Shaochuang, Wang, Haowei, Stone, Eloise M., Chakraborty, Sajib, Jayaraman, Padma-Sheela, Smith, Stuart, Amabilino, David B., Fromhold, Mark, Long, Yi-Tao, Pérez-García, Lluïsa, Turyanska, Lyudmila, Rahman, Ruman, and Rawson, Frankie J.
- Published
- 2024
- Full Text
- View/download PDF
57. Linear Run Time of Persistent Homology Computation with GPU Parallelization
- Author
-
Rawson, Michael G.
- Subjects
Computer Science - Distributed, Parallel, and Cluster Computing ,Mathematics - Algebraic Topology - Abstract
Persistent homology is a crucial invariant that is used in many areas to understand data. The $O(N^4)$ run time is a hindrance to its use on most large datasets. We give a parallelization method to utilize multi-core machines and clusters. We implement the computation of the $0^{th}$ persistent homology with OpenMP parallelization and observe a 1.75 fold performance increase by using 2 threads on a dual core machine. We also benchmark the computation using larger numbers of threads and show that the thread computational overhead decreases performance. With GPU parallelization, we analytically and empirically decrease the run time scaling from $O(N^4)$ to $O(N^3)$ and even $O(N^2)$ where $N$ is the number of data points, for a large enough GPU. Next, we analytically show run time scaling $O(N)$ for an even larger GPU.
- Published
- 2022
58. Topological Data Analysis for Word Sense Disambiguation
- Author
-
Rawson, Michael, Dooley, Samuel, Bharadwaj, Mithun, and Choudhary, Rishabh
- Subjects
Computer Science - Computation and Language ,Mathematics - Algebraic Topology - Abstract
We develop and test a novel unsupervised algorithm for word sense induction and disambiguation which uses topological data analysis. Typical approaches to the problem involve clustering, based on simple low level features of distance in word embeddings. Our approach relies on advanced mathematical concepts in the field of topology which provides a richer conceptualization of clusters for the word sense induction tasks. We use a persistent homology barcode algorithm on the SemCor dataset and demonstrate that our approach gives low relative error on word sense induction. This shows the promise of topological algorithms for natural language processing and we advocate for future work in this promising area.
- Published
- 2022
59. ASO Visual Abstract: The Effect of Neoadjuvant Systemic Therapy on Surgical Outcomes After Lymph Node Dissections for Stage III Melanoma: An Australian Cohort
- Author
-
Zijlker, Lisanne P., Chen, Henry, Spillane, Andrew J., Gonzalez, Maria, Pennington, Thomas E., Menzies, Alexander M., Lo, Serigne N., Ferguson, Peter, Rawson, Robert, Colebatch, Andrew J., Stretch, Jonathan R., Thompson, John F., Ch’ng, Sydney, Nieweg, Omgo, Shannon, Kerwin F., Long, Georgina V., Scolyer, Richard A., Saw, Robyn P. M., and van Akkooi, Alexander C. J.
- Published
- 2024
- Full Text
- View/download PDF
60. Dealing with Isolation Using Online Morning Huddles for University Lecturers during Physical Distancing by COVID-19: Field Notes
- Author
-
Kotera, Yasuhiro, Green, Pauline, Rhodes, Christine, Williams, Alan, Chircop, James, Spink, Rachel, Rawson, Rebecca, and Okere, Uche
- Abstract
Isolation can affect our well-being negatively. To prevent the spread of the infection COVID-19, many workers, including university lecturers, are required to work from home. In order to maintain high levels of well-being and team cohesion, academics at the University of Derby Online Learning initiated a virtual huddle to briefly socialise and check on their colleagues' well-being every morning. This piece of field notes reports the context (COVID-19 in the United Kingdom), the details of this morning socialization, the first-hand experience of attending this huddle, and possible applications. Perceived positive impacts of our huddles include better well-being, cultivating compassion in team culture, and enhanced team cohesion. These advantages can be also useful in student supervision, wider socialization with colleagues to counter the silo mentality, and other occupational sectors. Our field notes will be helpful for lecturers and other types of employees who work collaboratively yet in isolation during this uncertain and challenging time of crisis.
- Published
- 2020
61. Entropic Hyper-Connectomes Computation and Analysis
- Author
-
Rawson, Michael G.
- Subjects
Statistics - Methodology ,Mathematics - Statistics Theory ,Statistics - Computation - Abstract
Brain function and connectivity is a pressing mystery in medicine related to many diseases. Neural connectomes have been studied as graphs with graph theory methods including topological methods. Work has started on hypergraph models and methods where the geometry and topology is significantly different. We define a hypergraph called the hyper-connectome with joint information entropy and total correlation. We give the pseudocode for computation from finite samples. We give the theoretic importance of this generalization's topology and geometry with respect to random variables and then prove the hypergraph can be necessary for prediction and classification. We confirm with a simulation study and computation. We prove the approximation for continuous random variables with finite samples. We compare connectome versus hyper-connectome for predicting schizophrenia in subjects based on a fMRI dataset using a linear support vector machine. The hyper-connectome achieves better performance in accuracy (up to 56\%) and F1 score (up to 0.52) than the connectome. We reject null hypothesis at 95\% with p-value = 0.00074.
- Published
- 2022
62. Optimal Transport for Super Resolution Applied to Astronomy Imaging
- Author
-
Rawson, Michael and Hultgren, Jakob
- Subjects
Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition ,Electrical Engineering and Systems Science - Signal Processing ,68T10, 85-08 ,I.4.0 - Abstract
Super resolution is an essential tool in optics, especially on interstellar scales, due to physical laws restricting possible imaging resolution. We propose using optimal transport and entropy for super resolution applications. We prove that the reconstruction is accurate when sparsity is known and noise or distortion is small enough. We prove that the optimizer is stable and robust to noise and perturbations. We compare this method to a state of the art convolutional neural network and get similar results for much less computational cost and greater methodological flexibility., Comment: 5 pages, 2 figures
- Published
- 2022
63. Top-K Ranking Deep Contextual Bandits for Information Selection Systems
- Author
-
Freeman, Jade and Rawson, Michael
- Subjects
Computer Science - Machine Learning ,Computer Science - Information Retrieval - Abstract
In today's technology environment, information is abundant, dynamic, and heterogeneous in nature. Automated filtering and prioritization of information is based on the distinction between whether the information adds substantial value toward one's goal or not. Contextual multi-armed bandit has been widely used for learning to filter contents and prioritize according to user interest or relevance. Learn-to-Rank technique optimizes the relevance ranking on items, allowing the contents to be selected accordingly. We propose a novel approach to top-K rankings under the contextual multi-armed bandit framework. We model the stochastic reward function with a neural network to allow non-linear approximation to learn the relationship between rewards and contexts. We demonstrate the approach and evaluate the the performance of learning from the experiments using real world data sets in simulated scenarios. Empirical results show that this approach performs well under the complexity of a reward structure and high dimensional contextual features.
- Published
- 2022
- Full Text
- View/download PDF
64. Convergence Guarantees for Deep Epsilon Greedy Policy Learning
- Author
-
Rawson, Michael and Balan, Radu
- Subjects
Computer Science - Machine Learning ,Computer Science - Information Theory ,Mathematics - Statistics Theory - Abstract
Policy learning is a quickly growing area. As robotics and computers control day-to-day life, their error rate needs to be minimized and controlled. There are many policy learning methods and bandit methods with provable error rates that accompany them. We show an error or regret bound and convergence of the Deep Epsilon Greedy method which chooses actions with a neural network's prediction. We also show that Epsilon Greedy method regret upper bound is minimized with cubic root exploration. In experiments with the real-world dataset MNIST, we construct a nonlinear reinforcement learning problem. We witness how with either high or low noise, some methods do and some do not converge which agrees with our proof of convergence.
- Published
- 2021
65. Bridging the Gap Between Practice Guidelines and the Therapy Room: Community-Derived Practice Adaptations for Psychological Services with Transgender and Gender Diverse Adults in the Central United States.
- Author
-
Hope, Debra, Holt, Natalie, Woodruff, Nathan, Meyer, Heather, Puckett, Jae, Eyer, Joshua, Craig, Shelley, Feldman, Jamie, Irwin, Jay, Pachankis, John, Rawson, K, Sevelius, Jeanne, and Butler, Sim
- Abstract
Individuals who identify as transgender or gender diverse (TGD) are presenting at mental health clinicians offices with increasing frequency. Many TGD clients are seeking care related to affirming their gender identity but also may present with anxiety, depression, trauma, substance abuse, or other problems for which a clinician may commonly provide services. Some clinicians may hesitate to accept TGD clients into their practice if they have little specialized training to work with this population in an affirming manner, especially in more underserved areas where a generalist practice is the norm. Numerous professional associations and experts have developed guidelines for affirmative behavioral health care for TGD people. However, what is needed are community informed recommendations to bridge from the official guidelines to clinicians in-session activities. The Trans Collaborations Practice Adaptations for Psychological Interventions for Transgender and Gender Diverse Adults are derived from iterative interviews with TGD community members and affirming mental health clinicians in the Central United States. The 12 practice adaptations are intended to guide clinicians to adapt their usual treatment approach to be TGD affirming, especially in underserved and rural areas. The practice adaptations cover numerous aspects of practice including the office setting and paperwork, understanding gender identity and incorporating it into the case conceptualization, therapists self-awareness, and referrals. The Trans Collaborations Practice Adaptations will help clinicians work confidently and competently with adult TGD clients, regardless of the presenting problem, to ensure TGD communities receive the best interventions for their behavioral health concerns.
- Published
- 2022
66. Yeast PI31 inhibits the proteasome by a direct multisite mechanism
- Author
-
Rawson, Shaun, Walsh, Richard M, Velez, Benjamin, Schnell, Helena M, Jiao, Fenglong, Blickling, Marie, Ang, Jessie, Bhanu, Meera K, Huang, Lan, and Hanna, John
- Subjects
Biochemistry and Cell Biology ,Biological Sciences ,Cryoelectron Microscopy ,Cytoplasm ,Proteasome Endopeptidase Complex ,Saccharomyces cerevisiae ,Saccharomyces cerevisiae Proteins ,Chemical Sciences ,Medical and Health Sciences ,Biophysics ,Developmental Biology ,Biological sciences ,Biomedical and clinical sciences ,Chemical sciences - Abstract
Proteasome inhibitors are widely used as therapeutics and research tools, and typically target one of the three active sites, each present twice in the proteasome complex. An endogeneous proteasome inhibitor, PI31, was identified 30 years ago, but its inhibitory mechanism has remained unclear. Here, we identify the mechanism of Saccharomyces cerevisiae PI31, also known as Fub1. Using cryo-electron microscopy (cryo-EM), we show that the conserved carboxy-terminal domain of Fub1 is present inside the proteasome's barrel-shaped core particle (CP), where it simultaneously interacts with all six active sites. Targeted mutations of Fub1 disrupt proteasome inhibition at one active site, while leaving the other sites unaffected. Fub1 itself evades degradation through distinct mechanisms at each active site. The gate that allows substrates to access the CP is constitutively closed, and Fub1 is enriched in mutant CPs with an abnormally open gate, suggesting that Fub1 may function to neutralize aberrant proteasomes, thereby ensuring the fidelity of proteasome-mediated protein degradation.
- Published
- 2022
67. Deep Upper Confidence Bound Algorithm for Contextual Bandit Ranking of Information Selection
- Author
-
Rawson, Michael and Freeman, Jade
- Subjects
Computer Science - Machine Learning ,Computer Science - Information Theory ,Mathematics - Statistics Theory - Abstract
Contextual multi-armed bandits (CMAB) have been widely used for learning to filter and prioritize information according to a user's interest. In this work, we analyze top-K ranking under the CMAB framework where the top-K arms are chosen iteratively to maximize a reward. The context, which represents a set of observable factors related to the user, is used to increase prediction accuracy compared to a standard multi-armed bandit. Contextual bandit methods have mostly been studied under strict linearity assumptions, but we drop that assumption and learn non-linear stochastic reward functions with deep neural networks. We introduce a novel algorithm called the Deep Upper Confidence Bound (UCB) algorithm. Deep UCB balances exploration and exploitation with a separate neural network to model the learning convergence. We compare the performance of many bandit algorithms varying K over real-world data sets with high-dimensional data and non-linear reward functions. Empirical results show that the performance of Deep UCB often outperforms though it is sensitive to the problem and reward setup. Additionally, we prove theoretical regret bounds on Deep UCB giving convergence to optimality for the weak class of CMAB problems.
- Published
- 2021
68. No news is bad news: local news intensity and firms’ information environments
- Author
-
Allee, Kristian D., Cating, Ryan, and Rawson, Caleb
- Published
- 2023
- Full Text
- View/download PDF
69. Structure of the preholoproteasome reveals late steps in proteasome core particle biogenesis
- Author
-
Walsh, Jr., Richard M., Rawson, Shaun, Schnell, Helena M., Velez, Benjamin, Rajakumar, Tamayanthi, and Hanna, John
- Published
- 2023
- Full Text
- View/download PDF
70. Craving among individuals with stimulant use disorder in residential social model-based treatment - Can exercise help?
- Author
-
Salem, Bilal, Gonzales-Castaneda, Rachel, Ang, Alfonso, Chudzynski, Joy, Penate, Jose, Dolezal, Brett, Cooper, Christopher, Rawson, Richard, Mooney, Larissa, and Dickerson, Daniel
- Subjects
Craving ,Exercise ,Methamphetamine ,Outcomes ,Adult ,Aftercare ,Amphetamine-Related Disorders ,Craving ,Female ,Humans ,Male ,Methamphetamine ,Patient Discharge ,Residential Treatment - Abstract
BACKGROUND: In a randomized controlled 8-week trial, we examined the efficacy of aerobic and resistance exercise in reducing craving for methamphetamine (MA) among individuals with MA-use disorder during residential treatment. METHODS: Individuals with MA use disorder (138) who were newly enrolled in residential treatment volunteered for random assignment to either an 8-week exercise intervention (EX) or health education control (HE), with both conditions meeting 3 times weekly; 3 dropped out of the trial, bringing the analysis sample to 135. The majority of participants were male (80%), and 48% were Latino/Hispanic. The mean age of the sample was 31.7 (SD = 6.9) years. Using multivariate mixed models, differences between conditions were examined in: (1) craving for MA, measured by self-reported ratings on a Visual Analog Scale over the 8-week trial and, (2) MA use, measured by self-report and urine drug screens at baseline and 30 and 60 days after discharge from the 8-week study. RESULTS: Results revealed significantly lower craving scores among the participants in the EX group than those in the HE group over the 8-week trial (median daily craving score for EX = 13.5, for HE = 21.8; p = .009). In addition, participants with less craving during treatment had significantly lower rates of MA use after discharge than participants with high craving measured at 30-days (p = .004) and 60-days post-discharge (p
- Published
- 2022
71. Theatre Clowning in L2 Teacher Learning: An Example from Waldorf /Steiner Education
- Author
-
Rawson, Martyn Paul and Bryden, Catherine
- Subjects
Waldorf/Steiner ,L2 teacher education ,performance ,reflection - Abstract
This article explores the role of theatre clowning with scaffolded reflection in Waldorf (Steiner) teacher learning in enabling L2 teachers to develop important teaching dispositions. Waldorf schools require their L2 teachers to be creative, imaginative, skilled in narrative and presentation as well as being responsive to student needs and teaching situation. Theatre clowning has been previously studied in teacher development and this study affirms the outcomes of that research and adds the contribution of structured reflection to transformative learning both in initial teacher education and in continuing professional development. The study suggests that theatre clowning can be a valuable artistic approach in L2 teacher learning, especially when supported by scaffolded reflection.
- Published
- 2022
72. The relaxin receptor RXFP1 signals through a mechanism of autoinhibition
- Author
-
Erlandson, Sarah C., Rawson, Shaun, Osei-Owusu, James, Brock, Kelly P., Liu, Xinyue, Paulo, Joao A., Mintseris, Julian, Gygi, Steven P., Marks, Debora S., Cong, Xiaojing, and Kruse, Andrew C.
- Published
- 2023
- Full Text
- View/download PDF
73. Practical Approaches to Management of Children With COVID-19 and Kidney Disease: the Known, Unknown, and the Future
- Author
-
Mannemuddhu, Sai Sudha, Rawson, Ashley, and George, Roshan P.
- Published
- 2023
- Full Text
- View/download PDF
74. Rapid Diagnostic Test Value and Implementation in Antimicrobial Stewardship Across Low-to-Middle and High-Income Countries: A Mixed-Methods Review
- Author
-
Moore, Luke S. P., Villegas, Maria Virginia, Wenzler, Eric, Rawson, Timothy M., Oladele, Rita O., Doi, Yohei, and Apisarnthanarak, Anucha
- Published
- 2023
- Full Text
- View/download PDF
75. Author Correction: Epidemiological drivers of transmissibility and severity of SARS-CoV-2 in England
- Author
-
Perez-Guzman, Pablo N., Knock, Edward, Imai, Natsuko, Rawson, Thomas, Santoni, Cosmo Nazzareno, Alcada, Joana, Whittles, Lilith K., Thekke Kanapram, Divya, Sonabend, Raphael, Gaythorpe, Katy A. M., Hinsley, Wes, FitzJohn, Richard G., Volz, Erik, Verity, Robert, Ferguson, Neil M., Cori, Anne, and Baguelin, Marc
- Published
- 2023
- Full Text
- View/download PDF
76. Publisher Correction: Cryo-EM structure of a RAS/RAF recruitment complex
- Author
-
Park, Eunyoung, Rawson, Shaun, Schmoker, Anna, Kim, Byeong-Won, Oh, Sehee, Song, Kangkang, Jeon, Hyesung, and Eck, Michael J.
- Published
- 2023
- Full Text
- View/download PDF
77. Cryo-EM structure of a RAS/RAF recruitment complex
- Author
-
Park, Eunyoung, Rawson, Shaun, Schmoker, Anna, Kim, Byeong-Won, Oh, Sehee, Song, Kangkang, Jeon, Hyesung, and Eck, Michael J.
- Published
- 2023
- Full Text
- View/download PDF
78. Epidemiological drivers of transmissibility and severity of SARS-CoV-2 in England
- Author
-
Perez-Guzman, Pablo N., Knock, Edward, Imai, Natsuko, Rawson, Thomas, Santoni, Cosmo Nazzareno, Alcada, Joana, Whittles, Lilith K., Thekke Kanapram, Divya, Sonabend, Raphael, Gaythorpe, Katy A. M., Hinsley, Wes, FitzJohn, Richard G., Volz, Erik, Verity, Robert, Ferguson, Neil M., Cori, Anne, and Baguelin, Marc
- Published
- 2023
- Full Text
- View/download PDF
79. Engineering nanowires in bacteria to elucidate electron transport structural–functional relationships
- Author
-
Myers, Ben, Catrambone, Francesco, Allen, Stephanie, Hill, Phil J., Kovacs, Katalin, and Rawson, Frankie J.
- Published
- 2023
- Full Text
- View/download PDF
80. Tethered agonist activated ADGRF1 structure and signalling analysis reveal basis for G protein coupling
- Author
-
Jones, Daniel T. D., Dates, Andrew N., Rawson, Shaun D., Burruss, Maggie M., Lipper, Colin H., and Blacklow, Stephen C.
- Published
- 2023
- Full Text
- View/download PDF
81. Feasibility of implementing an innovative manual handling risk assessment training program for staff working in long-term care
- Author
-
Brusco, Natasha K, Graven, Christine, Boyd, Leanne, Kugler, Helen, Dawes, Helen, Rawson, Helen, Clayton, Lynne, Tan, Suzanna, Goodwin, Victoria A, Hall, Abi J, and Taylor, Nicholas F
- Published
- 2023
- Full Text
- View/download PDF
82. Promoting learning health system feedback loops: Experience with a VA practice-based research network card study
- Author
-
Golden, Rachel E, Klap, Ruth, Carney, Diane V, Yano, Elizabeth M, Hamilton, Alison B, Taylor, Stephanie L, Kligler, Benjamin, Whitehead, Alison M, Saechao, Fay, Zaiko, Yevgeniya, Pomernacki, Alyssa, Frayne, Susan M, Group, The WH-PBRN-CIH Writing, Bean-Mayberry, Bevanne, Bhoopalam, Sudha, Buckholdt, Kelly E, DiNardo, Deborah, Dussán, Kathleen Bronson, Hardman, Lisa, Hill, Elizabeth E, Juiris, Tahira, Koutrouba, Denise, Mattocks, Kristin, Rawson, Gina G, Rylander, Jeanette, Sadler, Anne G, Santiago-Cotto, Agnes, Singhal, Divya, and Thakar, Ishita
- Subjects
Health Services and Systems ,Health Sciences ,Clinical Research ,Aging ,Behavioral and Social Science ,Health Services ,Good Health and Well Being ,Feedback ,Female ,Humans ,Learning Health System ,United States ,United States Department of Veterans Affairs ,Veterans ,Veterans Health ,WH-PBRN-CIH Writing Group ,Health services and systems - Abstract
BackgroundWe tested the capacity of the 60-site VA Women's Health Practice-Based Research Network (WH-PBRN), embedded within VA, to employ a multisite card study to collect women Veterans' perspectives about Complementary and Integrative Health (CIH) and to rapidly return findings to participating sites and partnered national policy-makers in support of a Learning Health System (LHS) wherein evidence generation informs ongoing improvement.MethodsVA primary care clinic clerks and nurses distributed anonymous surveys (patient feedback forms) at clinics for up to two weeks in fiscal year 2017, asking about CIH behavior and preferred delivery methods. We examined the project's feasibility, representativeness, acceptability, and impact via a tracking system, national administrative data, debriefing notes, and three surveys of WH-PBRN Site Leads.ResultsTwenty geographically diverse and largely representative VA Medical Centers and 11 Community-Based Outpatient Clinics volunteered to participate. Over six months, N = 1191 women Veterans responded (median 57; range 8-151 per site). In under three months, we returned local findings benchmarked against multisite findings to all participating sites and summary findings to national VA partners. Sites and partners disseminated results to clinical and leadership stakeholders, who then applied results as warranted.ConclusionsVA effectively mobilized an embedded PBRN to implement a timely, representative, acceptable and impactful operations project.ImplicationsCard studies by PBRNs within large, national healthcare systems can provide rapid feedback to participating sites and national leaders to guide policies, programs, and practices.Level of evidenceSelf-selected respondents could have biased results.
- Published
- 2021
83. Antibiotic resistance profiling and valorization of food waste streams to starter culture biomass and exopolysaccharides through fed-batch fermentations
- Author
-
Yashwant, Chavan Priyanka, Rajendran, Vijay, Krishnamoorthy, Srinivasan, Nagarathinam, Baskaran, Rawson, Ashish, Anandharaj, Arunkumar, and Sivanandham, Vignesh
- Published
- 2023
- Full Text
- View/download PDF
84. Optimal l-one Rank One Matrix Decompositions
- Author
-
Balan, Radu, Okoudjou, Kasso A., Rawson, Michael, Wang, Yang, and Zhang, Rui
- Subjects
Mathematics - Functional Analysis ,Mathematics - Operator Algebras - Abstract
In this paper we consider the decomposition of positive semidefinite matrices as a sum of rank one matrices. We introduce and investigate the properties of various measures of optimality of such decompositions. For some classes of positive semidefinite matrices we give explicitly these optimal decompositions. These classes include diagonally dominant matrices and certain of their generalizations, $2\times 2$, and a class of $3\times 3$ matrices., Comment: Will appear in a Springer book "Harmonic Analysis and Applications", Ed. M. Rassias
- Published
- 2020
- Full Text
- View/download PDF
85. Effect of screening, brief intervention and referral to treatment for unhealthy alcohol and other drug use in mental health treatment settings: a randomized controlled trial.
- Author
-
Karno, Mitchell, Rawson, Richard, Rogers, Benjamin, Spear, Suzanne, Grella, Christine, Mooney, Larissa, Saitz, Richard, Kagan, Bruce, and Glasner, Suzette
- Subjects
Alcohol ,brief intervention ,drug ,mental health ,psychiatry ,referral to treatment ,screening ,Adult ,Alcoholism ,California ,Crisis Intervention ,Female ,Humans ,Longitudinal Studies ,Male ,Mass Screening ,Mental Disorders ,Middle Aged ,Referral and Consultation ,Substance-Related Disorders ,Young Adult - Abstract
AIMS: To test the efficacy of a brief intervention to reduce alcohol or drug use and to promote use of addiction services among patients seeking mental health treatment. DESIGN AND SETTING: A multi-centre, longitudinal, two-group randomized controlled trial with randomization within each of two mental health treatment systems located in Ventura County and Los Angeles County in California, USA. PARTICIPANTS: A total of 718 patients (49.2% female) aged 18 and older with a mental health diagnosis and either a heavy drinking day or any use of cannabis or stimulants in the past 90 days. INTERVENTION AND COMPARATOR: A motivation-based brief intervention with personalized feedback (screening, brief intervention and referral to treatment (SBIRT) condition) (n = 354) or a health education session (control condition) (n = 364). MEASUREMENTS: Primary outcomes included frequency of heavy drinking days, days of cannabis use and days of stimulant use at the primary end-point 3 months post-baseline. Secondary outcomes included frequency and abstinence from substance use out to a 12-month follow-up and the use of addiction treatment services. FINDINGS: Participants in the SBIRT condition had fewer heavy drinking days [odds ratio (OR) = 0.53; 95% credible interval (CrI) = 0.48-0.6] and fewer days of stimulant use (OR = 0.58; 95% CrI = 0.50-0.66) at the 3-month follow-up compared with participants in the health education condition. Participants in the SBIRT condition did not comparatively reduce days of cannabis use at the 3-month follow-up (OR = 0.93; 95% CrI = 0.85-1.01). Secondary outcomes indicated sustained effects of SBIRT on reducing the frequency of heavy drinking days and days of stimulant use. No effects were observed on abstinence rates or use of addiction treatment services. CONCLUSIONS: Screening and brief intervention for unhealthy alcohol and drug use in mental health treatment settings were effective at reducing the frequency of heavy drinking and stimulant use.
- Published
- 2021
86. Theatre Clowning in L2 Teacher Learning: An Example from Waldorf/Steiner Education
- Author
-
Rawson, Martyn Paul and Bryden, Catherine
- Abstract
This article explores the role of theatre clowning with scaffolded reflection in Waldorf (Steiner) teacher learning in enabling L2 teachers to develop important teaching dispositions. Waldorf schools require their L2 teachers to be creative, imaginative, skilled in narrative and presentation as well as being responsive to student needs and teaching situation. Theatre clowning has been previously studied in teacher development and this study affirms the outcomes of that research and adds the contribution of structured reflection to transformative learning both in initial teacher education and in continuing professional development. The study suggests that theatre clowning can be a valuable artistic approach in L2 teacher learning, especially when supported by scaffolded reflection.
- Published
- 2022
- Full Text
- View/download PDF
87. Understanding Students and Their Engagement in Contemporary Undergraduate Biology Education: Affective, Financial, and Life-Load Factors in Student Success
- Author
-
Kurt Rawson Williams
- Abstract
Achieving equitable outcomes in undergraduate biology education requires accurate conceptions of students and the barriers they face to engagement. However, discipline-based education research has yet to engage with the implications of the contemporary landscape of higher education--and its tolls on undergraduate well-being--in theorizing how to promote educational attainment in undergraduate STEM. Through four studies of undergraduate biology students' experiences and engagement in undergraduate biology courses at North Dakota State University, we illustrate widespread stress from academics, finances, and external commitments to work and family. Specifically, using descriptive analysis, latent variable modeling, and regularized logistic regression of survey data, we found that half of students experienced stress about meeting expenses, being 17 times as likely to work more hours to meet expenses and 9 times less likely to purchase required academic materials due to their cost; 41% of students experienced a large or extreme amount of stress about the debt they were accruing, and 14% reported that worry about debt influenced their thoughts of leaving the university; 38% of students reported non-traditional student characteristics; 42% experienced role conflict between work and school commitments; students in every course we surveyed experienced basic needs insecurity, being food insecure or homeless; and, collectively, financial stress and life-load concerns predicted students' academic and social integration, persistence confidence, GPA, study behaviors, participation in undergraduate research experience, and plans for graduate and professional education. Regarding discipline-specific learning, analysis of students' task values for learning chemistry content in biology showed that motivational challenges derived primarily from the costs of learning chemistry, in terms of stress, anxiety, and effort, and that the majority of students found learning chemistry in biology to be interesting and useful. Data about student experiences in contemporary undergraduate STEM support the design of learning environments that are effective for the students we teach. Theorizing learning as a human activity supports reflective practice and systemic intervention to render resilience in undergraduate biology education systems. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2022
88. Development and Evaluation of High-Density SNP Arrays for the Eastern Oyster Crassostrea virginica
- Author
-
Guo, Ximing, Puritz, Jonathan B., Wang, Zhenwei, Proestou, Dina, Allen, Jr., Standish, Small, Jessica, Verbyla, Klara, Zhao, Honggang, Haggard, Jaime, Chriss, Noah, Zeng, Dan, Lundgren, Kathryn, Allam, Bassem, Bushek, David, Gomez-Chiarri, Marta, Hare, Matthew, Hollenbeck, Christopher, La Peyre, Jerome, Liu, Ming, Lotterhos, Katie E., Plough, Louis, Rawson, Paul, Rikard, Scott, Saillant, Eric, Varney, Robin, Wikfors, Gary, and Wilbur, Ami
- Published
- 2023
- Full Text
- View/download PDF
89. Effect of ultrasonication on the protein–polysaccharide complexes: a review
- Author
-
Thirunavookarasu, Nirmal, Kumar, Sumit, and Rawson, Ashish
- Published
- 2022
- Full Text
- View/download PDF
90. Manager perception and proprietary investment disclosure
- Author
-
Rawson, Caleb
- Published
- 2022
- Full Text
- View/download PDF
91. Effects of Elaborations Included in Textbooks: Large Time Cost, Reduced Attention, and Lower Memory for Main Ideas
- Author
-
Daley, Nola and Rawson, Katherine A.
- Abstract
Textbooks currently include many elaborations that describe, illustrate, and explain main ideas, increasing the length of these textbook chapters. The current study investigated if the cost in additional reading time that these elaborations impose is outweighed by benefits to memory for main ideas. Given that elaborations in textbooks sometimes fail to produce memory benefits, the current study also investigated if the reason is that less time is spent reading main ideas sentences in elaborated versus unelaborated texts. In two experiments, participants read a textbook passage with just the main ideas or with these main ideas and elaborations. Two days later, participants completed tests of their memory for the main ideas. Conceptually replicating previous research, elaborations did not provide a memory benefit commensurate with the time cost they imposed. Results also indicated that the lack of benefit is at least partially attributable to less time spent reading main ideas for the elaborated versus unelaborated text. To further investigate why students spent less time on main idea sentences, Experiment 2 provided evidence that this difference may be due to difficulty discriminating main ideas from elaborations while reading. In sum, textbook elaborations may impair memory for main ideas due to less time spent on these main ideas despite the large overall time cost imposed; thus elaborated texts can be less effective than unelaborated texts.
- Published
- 2021
- Full Text
- View/download PDF
92. Do Students Effectively Regulate Their Use of Self-Testing as a Function of Item Difficulty?
- Author
-
Badali, Sabrina, Rawson, Katherine A., and Dunlosky, John
- Published
- 2022
- Full Text
- View/download PDF
93. Implementation of the hub and spoke model for opioid use disorders in California: Rationale, design and anticipated impact.
- Author
-
Miele, Gloria M, Caton, Lauren, Freese, Thomas E, McGovern, Mark, Darfler, Kendall, Antonini, Valerie Pearce, Perez, Marlies, and Rawson, Richard
- Subjects
Humans ,Opioid-Related Disorders ,Buprenorphine ,Analgesics ,Opioid ,State Government ,Government Programs ,Health Plan Implementation ,Primary Health Care ,Health Services Accessibility ,California ,Opiate Substitution Treatment ,California state targeted response ,Implementation ,Opioid epidemic ,Opioid use disorder treatment ,Brain Disorders ,Neurosciences ,Substance Misuse ,Clinical Research ,Drug Abuse (NIDA only) ,8.1 Organisation and delivery of services ,Health and social care services research ,Good Health and Well Being ,Public Health and Health Services ,Psychology ,Substance Abuse - Abstract
As part of the State Targeted Response to the opioid epidemic, California has adopted the Hub and Spoke model to expand access to medications for opioid use disorder, particularly buprenorphine, throughout the state. By aligning opioid treatment programs as hubs with primary care, office-based practitioners, and other health care settings as spokes, a broader treatment model can reach more people with opioid use disorder, improve access to medications for opioid use disorders, and decrease overdose deaths. Expanding access requires expanding knowledge and intensive implementation support of new practices. This paper describes the rationale, specific activities and anticipated impact of the implementation plan in California's Hub and Spoke system. Training and technical assistance are designed to: increase the number and capacity of waivered prescribers; enhance skills of prescribers and multidisciplinary teams; and create systems change. Activities include buprenorphine waiver trainings and provider support, a practice facilitator program, Project ECHO sessions, webinars, clinical skills trainings, and regional learning collaboratives. This overview highlights the steps California is taking to build treatment capacity to address the opioid epidemic.
- Published
- 2020
94. TGFβ1 single-nucleotide polymorphism C-509T alters mucosal cell function in pediatric eosinophilic esophagitis
- Author
-
Duong, LD, Rawson, R, Bezryadina, A, Manresa, MC, Newbury, RO, Dohil, R, Liu, Z, Barrett, K, Kurten, R, and Aceves, SS
- Subjects
Medical Physiology ,Biomedical and Clinical Sciences ,Clinical Research ,Genetics ,Digestive Diseases ,Food Allergies ,2.1 Biological and endogenous factors ,Aetiology ,Cell Adhesion ,Cells ,Cultured ,Child ,Eosinophilic Esophagitis ,Epithelial Cells ,Female ,Fibroblasts ,Fibrosis ,Genetic Association Studies ,Genotype ,Humans ,Intestinal Mucosa ,Male ,Polymorphism ,Single Nucleotide ,Transforming Growth Factor beta1 ,Biological Sciences ,Medical and Health Sciences ,Immunology - Abstract
Eosinophilic esophagitis (EoE) is a chronic Th2 antigen-driven disorder associated with tissue remodeling. Inflammation and remodeling lead to esophageal rigidity, strictures, and dysphagia. TGFβ1 drives esophageal remodeling including epithelial barrier dysfunction and subepithelial fibrosis. A functional SNP in the TGFβ1 gene that increases its transcription (C-509T) is associated with elevated numbers of esophageal TGFβ1-expressing cells. We utilized esophageal biopsies and fibroblasts from TT-genotype EoE children to understand if TGFβ1 influenced fibroblast and epithelial cell function in vivo. Genotype TT EoE esophageal fibroblasts had higher baseline TGFβ1, collagen1α1, periostin, and MMP2 (p
- Published
- 2020
95. PQS Produced by the Pseudomonas aeruginosa Stress Response Repels Swarms Away from Bacteriophage and Antibiotics.
- Author
-
Bru, Jean-Louis, Rawson, Brandon, Trinh, Calvin, Høyland-Kroghsbo, Nina, Whiteson, Katrine, and Siryaporn, Albert
- Subjects
antibiotics ,bacteriophage ,quorum sensing ,stress response ,swarming ,Anti-Bacterial Agents ,Fimbriae ,Bacterial ,Flagella ,Microbial Viability ,Movement ,Pseudomonas Phages ,Pseudomonas aeruginosa ,Quinolones ,Quorum Sensing ,Signal Transduction ,Stress ,Physiological - Abstract
We investigate the effect of bacteriophage infection and antibiotic treatment on the coordination of swarming, a collective form of flagellum- and pilus-mediated motility in bacteria. We show that phage infection of the opportunistic bacterial pathogen Pseudomonas aeruginosa abolishes swarming motility in the infected subpopulation and induces the release of the Pseudomonas quinolone signaling molecule PQS, which repulses uninfected subpopulations from approaching the infected area. These mechanisms have the overall effect of limiting the infection to a subpopulation, which promotes the survival of the overall population. Antibiotic treatment of P. aeruginosa elicits the same response, abolishing swarming motility and repulsing approaching swarms away from the antibiotic-treated area through a PQS-dependent mechanism. Swarms are entirely repelled from the zone of antibiotic-treated P. aeruginosa, consistent with a form of antibiotic evasion, and are not repelled by antibiotics alone. PQS has multiple functions, including serving as a quorum-sensing molecule, activating an oxidative stress response, and regulating the release of virulence and host-modifying factors. We show that PQS serves additionally as a stress warning signal that causes the greater population to physically avoid cell stress. The stress response at the collective level observed here in P. aeruginosa is consistent with a mechanism that promotes the survival of bacterial populations.IMPORTANCE We uncover a phage- and antibiotic-induced stress response in the clinically important opportunistic pathogen Pseudomonas aeruginosa Phage-infected P. aeruginosa subpopulations are isolated from uninfected subpopulations by the production of a stress-induced signal. Activation of the stress response by antibiotics causes P. aeruginosa to physically be repelled from the area containing antibiotics altogether, consistent with a mechanism of antibiotic evasion. The stress response observed here could increase P. aeruginosa resilience against antibiotic treatment and phage therapy in health care settings, as well as provide a simple evolutionary strategy to avoid areas containing stress.
- Published
- 2019
96. Patient perceptions of treatment with medication treatment for opioid use disorder (MOUD) in the Vermont hub-and-spoke system
- Author
-
Rawson, Richard A, Rieckmann, Traci, Cousins, Sarah, McCann, Michael, and Pearce, Regina
- Subjects
Health Services and Systems ,Health Sciences ,Clinical Trials and Supportive Activities ,Neurosciences ,Clinical Research ,Prevention ,Substance Misuse ,Drug Abuse (NIDA only) ,Brain Disorders ,Management of diseases and conditions ,7.1 Individual care needs ,Adult ,Aged ,Aged ,80 and over ,Buprenorphine ,Female ,Health Services Accessibility ,Humans ,Male ,Methadone ,Middle Aged ,Naloxone ,Narcotic Antagonists ,Opiate Substitution Treatment ,Opioid-Related Disorders ,Patient Satisfaction ,Vermont ,Young Adult ,Opioid use disorder ,Medication-assisted treatment ,Medication treatment for opioid use disorders ,System of care ,Hub and spoke ,Human Movement and Sports Sciences ,Public Health and Health Services ,Public Health ,Epidemiology ,Public health - Abstract
In 2013, Vermont leaders implemented the "hub-and-spoke" (H & S) system to increase access to medication treatment for opioid use disorder (MOUD). "Hubs" are licensed specialty opioid treatment programs (OTPs) with the authority to dispense buprenorphine/naloxone and methadone. "Spokes" are primary care practices that provide office-based opioid treatment, primarily with buprenorphine/naloxone. This report describes the qualitative component of an evaluation of the H&S system, conducted in 2016. The qualitative data collection assessed patient perspectives about the positive and negative aspects of treatment in the H & S system. The data collected included 80 responses to five open-ended questions and 24 in-depth interviews. Five open-ended questions were completed with hub (n = 40) and spoke (n = 40) participants. In-depth qualitative interviews were conducted with different hub (n =12) and spoke (n =12) participants. Findings from both data collection approaches suggest positive perceptions about treatment overall by patients treated in both settings. Participants treated in spokes reported a positive treatment environment, minimal stigma, and few obstacles to treatment and a strong positive relationship with their prescriber. Hub patients valued the MOUD and expressed gratitude for having access to MOUD, but reported the treatment environment was somewhat challenging, with long lines and drug talk in the clinic, high staff turnover and "cookie cutter" treatment. There appear to be some differences in patient perceptions of MOUD treatment between patients treated in primary care settings and specialized OTP settings.
- Published
- 2019
97. Habitat degradation and indiscriminate hunting differentially impact faunal communities in the Southeast Asian tropical biodiversity hotspot
- Author
-
Tilker, Andrew, Abrams, Jesse F, Mohamed, Azlan, Nguyen, An, Wong, Seth T, Sollmann, Rahel, Niedballa, Jürgen, Bhagwat, Tejas, Gray, Thomas NE, Rawson, Benjamin M, Guegan, Francois, Kissing, Johnny, Wegmann, Martin, and Wilting, Andreas
- Subjects
Life on Land ,Animals ,Asia ,Southeastern ,Bayes Theorem ,Biodiversity ,Birds ,Conservation of Natural Resources ,Ecosystem ,Extinction ,Biological ,Mammals ,Population Dynamics ,Species Specificity ,Tropical Climate ,Conservation biology ,Tropical ecology - Abstract
Habitat degradation and hunting have caused the widespread loss of larger vertebrate species (defaunation) from tropical biodiversity hotspots. However, these defaunation drivers impact vertebrate biodiversity in different ways and, therefore, require different conservation interventions. We conducted landscape-scale camera-trap surveys across six study sites in Southeast Asia to assess how moderate degradation and intensive, indiscriminate hunting differentially impact tropical terrestrial mammals and birds. We found that functional extinction rates were higher in hunted compared to degraded sites. Species found in both sites had lower occupancies in the hunted sites. Canopy closure was the main predictor of occurrence in the degraded sites, while village density primarily influenced occurrence in the hunted sites. Our findings suggest that intensive, indiscriminate hunting may be a more immediate threat than moderate habitat degradation for tropical faunal communities, and that conservation stakeholders should focus as much on overhunting as on habitat conservation to address the defaunation crisis.
- Published
- 2019
98. Whole-genome landscape of mucosal melanoma reveals diverse drivers and therapeutic targets.
- Author
-
Newell, Felicity, Kong, Yan, Wilmott, James S, Johansson, Peter A, Ferguson, Peter M, Cui, Chuanliang, Li, Zhongwu, Kazakoff, Stephen H, Burke, Hazel, Dodds, Tristan J, Patch, Ann-Marie, Nones, Katia, Tembe, Varsha, Shang, Ping, van der Weyden, Louise, Wong, Kim, Holmes, Oliver, Lo, Serigne, Leonard, Conrad, Wood, Scott, Xu, Qinying, Rawson, Robert V, Mukhopadhyay, Pamela, Dummer, Reinhard, Levesque, Mitchell P, Jönsson, Göran, Wang, Xuan, Yeh, Iwei, Wu, Hong, Joseph, Nancy, Bastian, Boris C, Long, Georgina V, Spillane, Andrew J, Shannon, Kerwin F, Thompson, John F, Saw, Robyn PM, Adams, David J, Si, Lu, Pearson, John V, Hayward, Nicholas K, Waddell, Nicola, Mann, Graham J, Guo, Jun, and Scolyer, Richard A
- Subjects
Melanocytes ,Humans ,Melanoma ,Telomerase ,Signal Transduction ,Point Mutation ,Female ,Male ,Cyclin-Dependent Kinase 4 ,Proto-Oncogene Proteins c-mdm2 ,DNA Copy Number Variations ,Biomarkers ,Tumor ,Whole Genome Sequencing ,Biomarkers ,Tumor - Abstract
Knowledge of key drivers and therapeutic targets in mucosal melanoma is limited due to the paucity of comprehensive mutation data on this rare tumor type. To better understand the genomic landscape of mucosal melanoma, here we describe whole genome sequencing analysis of 67 tumors and validation of driver gene mutations by exome sequencing of 45 tumors. Tumors have a low point mutation burden and high numbers of structural variants, including recurrent structural rearrangements targeting TERT, CDK4 and MDM2. Significantly mutated genes are NRAS, BRAF, NF1, KIT, SF3B1, TP53, SPRED1, ATRX, HLA-A and CHD8. SF3B1 mutations occur more commonly in female genital and anorectal melanomas and CTNNB1 mutations implicate a role for WNT signaling defects in the genesis of some mucosal melanomas. TERT aberrations and ATRX mutations are associated with alterations in telomere length. Mutation profiles of the majority of mucosal melanomas suggest potential susceptibility to CDK4/6 and/or MEK inhibitors.
- Published
- 2019
99. Development and Application of a Functional Human Esophageal Mucosa Explant Platform to Eosinophilic Esophagitis.
- Author
-
Kurten, Richard C, Rawson, Renee, Shoda, Tetsuo, Duong, Loan D, Adejumobi, Dolapo, Levy, Rebecca, Newbury, Robert O, Rothenberg, Marc E, Akuthota, Praveen, Wright, Benjamin L, Dohil, Ranjan, Jones, Stacie M, and Aceves, Seema S
- Abstract
There is an increasing prevalence of esophageal diseases but intact human tissue platforms to study esophageal function, disease mechanisms, and the interactions between cell types in situ are lacking. To address this, we utilized full thickness human donor esophagi to create and validate the ex vivo function of mucosa and smooth muscle (n = 25). Explanted tissue was tested for contractile responses to carbachol and histamine. We then treated ex vivo human esophageal mucosa with a cytokine cocktail to closely mimic the Th2 and inflammatory milieu of eosinophilic esophagitis (EoE) and assessed alterations in smooth muscle and extracellular matrix function and stiffening. We found that full thickness human esophagus as well as the individual layers of circular and longitudinal muscularis propria developed tension in response to carbachol ex vivo and that mucosa demonstrated squamous cell differentiation. Treatment of mucosa with Th2 and fibrotic cytokines recapitulated the majority of the clinical Eosinophilic Esophagitis Diagnostic Profile (EDP) on fluidic transcriptional microarray. Transforming growth factor-beta-1 (TGFβ1) increased gene expression of fibronectin, smooth muscle actin, and phospholamban (p
- Published
- 2019
100. Pressure ulcer prevention for people with long-term neurological conditions (LTNCs) who self-manage care and live at home.
- Author
-
Muir, Delia, McLarty, Laura, Drinkwater, Jessica, Bennett, Carole, Birks, Yvonne, Broadway-Parkinson, Andrea, Cooksey, Vanessa, Gleeson, Phil, Holland, Christy, Ledger, Lisa, Lowe, Daniella-Jade, McGoverin, Andrea, Nixon, Jane, Perry, Tanya, Sandoz, Heidi, Rawson, Brian, Rawson, Yvonne, Stubbs, Nikki, Walker, Kay, and Whitaker, Helen
- Abstract
To develop a Theory of Change (ToC) pathway to facilitate the development of a multi-component intervention package supporting pressure Ulcer (PU) risk identification and management, in partnership with people with Long Term Neurological Conditions (LTNC) who self-manage care and live at home, their informal carers and PAs. A participatory approach, with extensive input from those whose lives are the focus of the research, was used throughout the 4 interlinked work packages (WP): • WP1 – Development of two co-operative Inquiry Groups (CIGs) • WP2 - Semi-structured interviews and/or app participation • WP3– Professional and strategic stakeholder engagement • WP4–Systems mapping and Theory of Change (ToC pathway development Iterative data analysis was undertaken with emerging findings from each WP informing subsequent stages of the study. Overall, 74 participants contributed across the 4 WPs, incorporating 31 Service Users (SU), 8 carers, 9 Personal Assistants (PAs) and 26 professional stakeholders. We identified 8 key themes related to PU prevention, incorporating, learning, safe routines, third sector and peer support, navigating complex systems, adapting and reacting to change, perceptions of risk, risk negotiation and supporting roles. The findings indicate systemic and professional barriers which hamper people's ability to self-care and seek help. The study highlights the complexities and impact of managing PU prevention activities at home for people with LTNC and areas of learning for health professionals and systems. By understanding these complexities we developed a systems map, identified resource requirements and illustrated a Theory of Change (ToC) pathway, to underpin future work to develop and user test an interactive, multi-component intervention. • People with Long-Term Neurological Conditions (LTNCs) are at increased risk of Pressure Ulcer (PU) development. • People with LTNCs often manage multiple needs and changing risks across complex health conditions and busy lives. • There is a gap in support, resources, and training for people with LTNCs and their carers, who manage PU risk at home. • Complex health and social care services, and gaps in provision, hamper people's ability to escalate care when needed. • Healthcare Professionals and service users sometimes have different perceptions of PU risk. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.