51. Integrated single-cell analysis unveils diverging immune features of covid-19, influenza, and other community-acquired pneumonia
- Author
-
Anno Saris, Brendon P. Scicluna, Felipe A. Vieira Braga, Louis Vermeulen, Justin de Brabander, Christine van Linge, W. Joost Wiersinga, Ivan Ramirez Moral, Tom van der Poll, Tom D Y Reijnders, Michiel Schinkel, Alex R. Schuurman, Internal medicine, VU University medical center, Center of Experimental and Molecular Medicine, Graduate School, Oncology, AGEM - Amsterdam Gastroenterology Endocrinology Metabolism, AII - Infectious diseases, and Infectious diseases
- Subjects
Male ,Communicable diseases -- Case studies ,Disease ,0302 clinical medicine ,Immunology and Inflammation ,COVID-19 (Disease) ,Community-acquired pneumonia ,Cytotoxic T cell ,Biology (General) ,Microbiology -- Case studies ,0303 health sciences ,education.field_of_study ,Microbiology and Infectious Disease ,General Neuroscience ,General Medicine ,Middle Aged ,3. Good health ,Community-Acquired Infections ,030220 oncology & carcinogenesis ,Medicine ,Female ,Single-Cell Analysis ,Research Article ,Human ,Adult ,QH301-705.5 ,Science ,Population ,Immunology ,Peripheral blood mononuclear cell ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Immune system ,Influenza, Human ,Human beings ,medicine ,Humans ,education ,030304 developmental biology ,Inflammation ,General Immunology and Microbiology ,business.industry ,PBMC ,COVID-19 ,Pneumonia ,medicine.disease ,Pneumonia -- Diagnosis ,Leukocytes, Mononuclear ,business ,CD8 - Abstract
The exact immunopathophysiology of community-acquired pneumonia (CAP) caused by SARS-CoV-2 (COVID-19) remains clouded by a general lack of relevant disease controls. The scarcity of single-cell investigations in the broader population of patients with CAP renders it difficult to distinguish immune features unique to COVID-19 from the common characteristics of a dysregulated host response to pneumonia. We performed integrated single-cell transcriptomic and proteomic analyses in peripheral blood mononuclear cells from a matched cohort of eight patients with COVID-19, eight patients with CAP caused by Influenza A or other pathogens, and four non-infectious control subjects. Using this balanced, multi-omics approach, we describe shared and diverging transcriptional and phenotypic patterns-including increased levels of type I interferon-stimulated natural killer cells in COVID-19, cytotoxic CD8 T EMRA cells in both COVID-19 and influenza, and distinctive monocyte compositions between all groups-and thereby expand our understanding of the peripheral immune response in different etiologies of pneumonia., peer-reviewed
- Published
- 2021
- Full Text
- View/download PDF