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The long-term trend in satellite retrieved phytoplankton size classes (PSC) such as picophytoplankton (PP), nanophytoplankton (NP), and microphytoplankton (MP) was studied in the three zones falling under different ecological provinces in open ocean regions of the Arabian Sea. A regionally tuned three-component "abundance" model was used to compute PSC biomass from Moderate Resolution Imaging Spectroradiometer onboard Aqua (MODISA) satellite data for the period of 17 years (2003 to 2019). The overall trend indicated the highest concentration of all PSC in the northern Arabian Sea (ARAB province) which gradually decreased to the southern region (MONS province). All PSC biomass showed a peak during the winter monsoon period in ARAB province attributed to the recurring algal bloom. The long-term temporal trend showed relatively lower concentration (most of the times < 0.1 mg m−3) of all PSC biomass in MONS in comparison with ARAB. However, the monthly climatology of total phytoplankton biomass exhibited a similar pattern in all the provinces. The temporal distribution of the PSC biomass discerned rank order of MP > PP > NP in ARAB. In contrast, MONS displayed PSC rank order as PP > NP > MP. A sharp decline in the concentration of MP biomass was observed during the onset of summer monsoon period in comparison with other PSC in MONS. [ABSTRACT FROM AUTHOR]

Primary productivity mostly relies on marine cyanobacteria in the oligotrophic north-eastern Mediterranean (NEM). However, wide shelf basin is fed by nutrient-rich rivers (namely Goksu, Lamas, Seyhan, Ceyhan, Asi) leading to apparent increase in algal production at coastal regions. In the present study, variation of picophytoplankton (pico-eukaryotes, Synechococcus and Prochlorococcus) abundance of at different trophic levels of NEM were investigated. Sample collection was carried out at 50 different stations including Mersin Bay, Goksu River discharge area and oligotrophic offshore waters during October 2017, February, April and July 2018. Minimum and maximum abundance of pico-eukaryotes, Synechococcus and Prochlorococcus were found as 1-1x104, 10³ - 3.3x104 and 8x10¹ -7.3x104 cell/ml, respectively. Eukaryotic picoplankton are observed mainly in Goksu River discharge area and could not compete with marine cyanobacteria in offshore waters. Annual average ofpico-eukaryotes abundance was decreased by 1.4 folds from inshore to offshore; while, annual average of Synechococcus abundance was increased by 1.2 folds. Prochlorococcus abundance did not vary from inshore to offshore but decreased by 4 folds from river discharge area to offshore area. Synechococcus and Prochlorococcus have displayed similar abundance profiles with peak levels near the Deep Chlorophyll Maximum (DCM) in October and July. Results showed that Synechococcus was the most abundant regardless of location or season. Even though Synechococcus abundance was found to be higher than Prochlorococcus abundance, a significant increase in the contribution of Prochlorococcus to the total picophytoplankton was observed in July. [ABSTRACT FROM AUTHOR]

Background: Picophytoplankton are abundant and can contribute greatly to primary production in eutrophic lakes. Mychonastes species are among the common eukaryotic picophytoplankton in eutrophic lakes. We used third-generation sequencing technology to sequence the whole genome of Mychonastes homosphaera isolated from Lake Chaohu, a eutrophic freshwater lake in China. Result: The 24.23 Mbp nuclear genome of M.homosphaera, harboring 6649 protein-coding genes, is more compact than the genomes of the closely related Sphaeropleales species. This genome streamlining may be caused by a reduction in gene family number, intergenic size and introns. The genome sequence of M.homosphaera reveals the strategies adopted by this organism for environmental adaptation in the eutrophic lake. Analysis of cultures and the protein complement highlight the metabolic flexibility of M.homosphaera, the genome of which encodes genes involved in light harvesting, carbohydrate metabolism, and nitrogen and microelement metabolism, many of which form functional gene clusters. Reconstruction of the bioenergetic metabolic pathways of M.homosphaera, such as the lipid, starch and isoprenoid pathways, reveals characteristics that make this species suitable for biofuel production. Conclusion: The analysis of the whole genome of M. homosphaera provides insights into the genome streamlining, the high lipid yield, the environmental adaptation and phytoplankton evolution. [ABSTRACT FROM AUTHOR]

Picophytoplankton abundance, biomass, and chlorophyll a concentration as well as contribution of picoalgae to total chlorophyll a, and species composition of phototrophic picoeukaryotes (cells size less than 3 µm) were studied in Blagopoluchia Bay (Novaya Zemlya archipelago) and the northwestern part of the Kara Sea in September 2017. In the Bay, the highest picophytoplankton abundance and biomass were found in the surface layer and averaged 0.75 × 109 cell/m3 and 1.49 mg С/m3 respectively. In the northwestern part of the Kara Sea, the highest abundance and biomass of picophytoplankton were observed in the 8 m layer and were 2.29 × 109 cells/m3 and 2.76 mg С/m3 respectively. The contribution of picophytoplankton to total chlorophyll a concentration varied from 12 to 24% in the Bay and reached 46% in the Kara Sea. The Illumina sequencing of the V4 region of 18S rRNA gene revealed eight classes of phototrophic picoeukaryotes. Mamiellophyceae dominated in the number of reads. Arctic endemic (Micromonas polaris) and widespread (Bathycoccus prasinos) species were revealed in both studied areas. [ABSTRACT FROM AUTHOR]

Abundance and biomass of small photosynthetic flagellates (SPF; 3–10 µm), chlorophyll a concentration, and the contribution of SPF to total phytoplankton biomass at different stages of seasonal succession in ice and in surface water were studied in Kandalaksha Bay of the White Sea in September 2016 and February and July 2017. In summer, SPF biomass in the photic layer averaged 38.36 ± 9.77 mg C/m3, 2.22 ± 1.43 mg C/m3 in autumn, 2.6 ± 1.72 mg C/m3 in under-ice water, and 14.79 ± 11.25 mg C/m3 in ice. The contribution of SPF to total phytoplankton biomass depended on the season and ranged from 29 to 95%; the contribution of SPF to sympagic communities averaged 66%. The size structure of photosynthetic flagellates varied by seasons. Flagellates with a cell size of 6–10 µm dominated in summer plankton and in the ice. Flagellates with a cell size of 3–6 µm prevailed in autumn and in the under-ice water. The obtained data of SPF abundance showed higher values of the total phytoplankton biomass of the White Sea in the autumn–winter period compared with the estimates obtained previously. Applying the method of epifluorescence microscopy confirmed the idea that photosynthetic flagellates were the main producers in the winter period as well as in the summer when the biomass of planktonic algae with cell size exceeding 10 µm is low. [ABSTRACT FROM AUTHOR]

Members of the class Mamiellophyceae comprise species that can dominate picophytoplankton diversity in polar waters. Yet, polar species are often morphologically indistinguishable from temperate species, although clearly separated by molecular features. Here we examine four Mamiellophyceae strains from the Canadian Arctic. The 18S rRNA and Internal Transcribed Spacer 2 (ITS2) gene phylogeny place these strains within the family Mamiellaceae (Mamiellales, Mamiellophyceae) in two separate clades of the genus Mantoniella. ITS2 synapomorphies support their placement as two new species, Mantoniella beaufortii and Mantoniella baffinensis. Both species have round green cells with diameter between 3 and 5 μm, one long flagellum and a short flagellum (~1 μm) and are covered by spiderweb‐like scales, making both species similar to other Mantoniella species. Morphologically, M. beaufortii and M. baffinensis are most similar to the cosmopolitan M. squamata with only minor differences in scale structure distinguishing them. Screening of global marine metabarcoding data sets indicates M. beaufortii has only been recorded in seawater and sea ice samples from the Arctic, while no environmental barcode matches M. baffinensis. Like other Mamiellophyceae genera that have distinct polar and temperate species, the polar distribution of these new species suggests they are cold or ice‐adapted Mantoniella species. [ABSTRACT FROM AUTHOR]

Members of the class Mamiellophyceae comprise species that can dominate picophytoplankton diversity in polar waters. Yet, polar species are often morphologically indistinguishable from temperate species, although clearly separated by molecular features. Here we examine four Mamiellophyceae strains from the Canadian Arctic. The 18S rRNA and Internal Transcribed Spacer 2 (ITS2) gene phylogeny place these strains within the family Mamiellaceae (Mamiellales, Mamiellophyceae) in two separate clades of the genus Mantoniella. ITS2 synapomorphies support their placement as two new species, Mantoniella beaufortii and Mantoniella baffinensis. Both species have round green cells with diameter between 3 and 5 μm, one long flagellum and a short flagellum (~1 μm) and are covered by spiderweb‐like scales, making both species similar to other Mantoniella species. Morphologically, M. beaufortii and M. baffinensis are most similar to the cosmopolitan M. squamata with only minor differences in scale structure distinguishing them. Screening of global marine metabarcoding data sets indicates M. beaufortii has only been recorded in seawater and sea ice samples from the Arctic, while no environmental barcode matches M. baffinensis. Like other Mamiellophyceae genera that have distinct polar and temperate species, the polar distribution of these new species suggests they are cold or ice‐adapted Mantoniella species. [ABSTRACT FROM AUTHOR]

Seasonal variations in the picophytoplankton community structure (Synechococcus spp. and picoeukaryotes) were studied by flow cytometry in the coastal ecosystem of the subtropical western Pacific from October 2019 to September 2020. Synechococcus spp. was dominant in abundance during the study period, with its density ranging from 0.05 to 5.6 × 104 cells mL−1; its maximum occurred in July 2020. Picoeukaryotes were less abundant, with their density ranging from 0.2 to 13.6 × 103 cells mL−1. Their highest abundance was recorded in January 2020. The growth rates of Synechococcus spp. and picoeukaryotes ranged from −0.39 to 1.42 d−1 and 0.38 to 2.46 d−1, respectively, throughout the study period. Overall, the growth rate of the picoeukaryotes was significantly higher than that of Synechococcus spp. It is interesting to note that the grazing mortality of Synechococcus spp. and picoeukaryotes during the warmer period (April to September) was relatively low. Based on this study, we suggest that mixotrophic nanoflagellates lowered their feeding activity that obtained nutrients from prey and instead used additional nutrients during the incubation experiments. Our study demonstrated that a shift in the picophytoplankton community composition and grazing activity of predacious nanoflagellates in cold and warm periods can impact on the seasonal dynamics of the microbial food web.

In this study, flow cytometry (FCM) and size-fractionated filtration, together with high-throughput molecular sequencing methods (SM), were used to investigate picophytoplankton. A particle separation filter and a higher-throughput sequencing method were used to evaluate the composition of a euphotic zone of picophytoplankton—especially picoeukaryotic phytoplankton—in the Western Pacific, and the results of flow cytometry, which is a classic way to detect picophytoplankton, were used as a standard to evaluate the reliability of the results of the SMs. Within a water column of 200 m, six water depths (5, 25, 50, 113 (DCM), 150, and 200 m) were established. In order to further study the particle size spectra of the picophytoplankton, size-fractionated filtration was used to separate water samples from each water depth into three particle size ranges: 0.2–0.6, 0.6–1.2, and 1.2–2 μm. A total of 36 (6 × 3 × 2) samples were obtained through PCR amplification of the 18S rRNA V4 hypervariable region and 16S rRNA, which were biased toward phytoplankton plastids, and then high-throughput sequencing was performed. The estimation of the picophytoplankton diameter relied on forward scattering (FSC) through FCM. The estimation of the vertical distribution and diameter of the picophytoplankton using the SM was consistent with the results with FCM; thus, we believe that the estimation of picophytoplankton composition with the SM has value as a reference, although the size-fractionated filtration seemed to cause some deviations. In addition to Prochlorococcus and Synechococcus, the SM was used to evaluate the composition of picoeukaryotic phytoplankton, which mainly included Prymnesiophycea (Haptophyta) (38.15%), Cryptophyceae (Cryptophyta) (22.36%), Dictyochophyceae (Chrysophyta) (12.22%), and Mamiellophyceae (Chlorophyta) (3.31%). In addition, the SM also detected Dinophyceae (Dinoflagellata) (11.69%) sequences and a small number of Bacillariophyceae (Diatom) (1.64%) sequences, which are generally considered to have large particle sizes. The results of the SM also showed that the picoeukaryotic phytoplankton were not evenly distributed in the euphotic layer, and the vertical distributions of the different picoeukaryotic phytoplankton were different. An analysis of correlations with environmental factors showed that temperature was the main environmental factor controlling the vertical distribution of picophytoplankton.

Abstract Operational taxonomic units 94%–95% similar to the known Pedinophyceae were found as a result of high‐through sequencing of 18S rDNA V4 amplicons of environmental DNA from the summer picophytoplankton samples from the White Sea. Partial sequence of a ribosomal operon (the 5,298 bp includes partial 18S and 28S rDNA, complete 5.8S rDNA, ITS1, and ITS2 sequences) and a partial 2,112 bp chloroplast 23S rDNA sequence White Sea Pedinophyceae was amplified from metagenomic DNA by specific primers and sequenced. A new phylotype was designated as uncultured Pedinophyceae WS. On Chlorophyta phylogenetic trees the discovered phylotype occupies a basal position in the Marsupiomonadales clade. The synapomorphic base substitutions in rRNA hairpins confirm the relationship of Pedinophyceae WS to Marsupiomonadales and its difference from known genera of the order. The obtained results extend knowledge of picophytoplankton diversity in subarctic waters.

In oceanic communities, picophytoplankton often dominates phytoplankton biomass and productivity. Diel variations in picophytoplankton abundance and growth have been well documented. In the current study, we used flow cytometry to assess the short-term variations (3 h) of the abundance of the most dominant picophytoplankton, Synechococcus spp. and picoeukaryotes, in the coastal regions of northeastern Taiwan. To explore the change in growth and mortality rate in the daytime and over 24 h incubation, we performed a two-point modified dilution experiment for measuring growth, viral lysis, and nanoflagellate grazing rate. In this study, the growth rates of picoeukaryotes were 0.21 and 0.06 h−1, and those of Synechococcus spp. were 0.15 and 0.06 h−1 for daytime and 24 h incubation, respectively, and the values were higher at significant levels in the daytime than those for 24 h incubation. These growth rate values of picoeukaryote and Synechococcus spp. after incubation for 24 h were approximately underestimated at 71% and 55%, respectively. This finding suggests that estimates based on 24 h sampling may not accurately reflect the true growth rate of these populations on ecologically relevant timescales.

Based on the field surveys aimed at understanding the variations of Synechococcus (Syn) abundance in the Pearl River Estuary during different seasons. We found that heavy terrestrial precipitation result in significant riverine runoffs and promote Syn growth, extension and blooms during warm and wet seasons. To understand the ecological role of Syn play in this estuary during wet seasons, we combined flow cytometry and high throughput sequencing (HTS) of 16S rDNA to investigate the phytoplankton distribution patterns and the potential shaping mechanisms during a typical wet season. During the cruise, picophytoplankton, especially Syn, and Nano-eukaryotes contributed importantly to the total phytoplankton biomass of the estuary. Syn can be further divided into phycoerythrin (PE)-rich Syn and phycocyanin (PC)-rich Syn, with PC-rich Syn about 1.5 times higher than PE-rich Syn in abundance. Both PE-rich Syn (60.75 × 103 cells ml−1) and PC-rich Syn (604.05 × 103 cells ml−1) reach the highest abundance at the lower part of the estuary. Moreover, PE-rich Syn can be divided into two subgroups which showed different salinity preference, with PE1 distributed in the high salinity area (with salinity >25) while PE2 in the middle salinity area (with salinity 7–20). Our results from the 16S rDNA sequencing also indicated abundant diversity and different niche adaptation of Syn with the operational taxonomic units (OTUs) along the estuary. Besides, analysis also indicated a tight correlation between estuarine Syn and active heterotrophic bacteria, especially groups of Rhodobacteria and Actionobacteria. Unlabelled Image • Small phytoplankton, especially Synechococcus and nanoeukaryotes, contribute to the blooms in the lower Pearl River Estuary. • Phycocyanin-rich Synechococcus have wide salinity tolerances and occur in high abundance in the lower estuary. • The two groups of phycoerythrin-rich Synechococcus have different salinity tolerances. • Different niche segregation among picocyanobacterial clades can be identified from the OTUs of 16S rDNA. • Synechococcus blooms show close interactions with active bacteria, particularly for Rhodobacteria and Actinobacteria. [ABSTRACT FROM AUTHOR]

The spatial distribution of picophytoplankton abundance, biomass, chlorophyll a and the contribution of picoalgae to the total chlorophyll a was studied in the outer Ob River estuary with the adjacent shelf and in the western part of the Kara Sea. In August–September, the picophytoplankton abundance and biomass varied from 0.1 to 17.3 × 106 cell/L and from 0.06 to 9.20 mg С/m3, respectively. Photosynthetic picoeukaryotes dominated in the plankton picofraction; the contribution of cyanobacteria to the total picophytoplankton biomass did not exceed 11%. The highest contribution of picophytoplankton to the total phytoplankton abundance was observed at a lower (<11 mg/m2) euphotic zone integrated chlorophyll a. The spatial heterogeneity of picoforms contribution was determined by the silicon concentration. [ABSTRACT FROM AUTHOR]

For the first time, the species composition of heterotrophic nanoflagellates, their quantitative characteristics, and abundance and biomass of their main food objects—bacteria and picophytoplankton, were determined in the water column and sediments of the Laptev Sea. In early autumn, an increase in the number and biomass of planktonic flagellates was recorded on a meridional transect from the Lena River delta to the deep-sea zone in the area of the internal shelf impacted by freshwater input from the Lena River. The pattern of the vertical distribution of planktonic flagellates differed in different parts of the sea, but everywhere their largest number was confined to either the surface or near-bottom layers. The quantitative parameters of planktonic flagellates correlated positively with the temperature, bacterial abundance, and biomass, and negatively correlated with water salinity. The abundance and biomass of heterotrophic flagellates in surface sediments was three to four orders of magnitude higher than in the water column and exceeded those of planktonic flagellates at shallow sites under 1 m2. A total of 28 species and forms of heterotrophic flagellates have been identified. Representatives of two taxonomic groups—Kinetoplastea and Stramenopiles, the most tolerant to the salinity—dominated in the community. The species richness of the flagellates decreased with water depth, it was minimum in less saline coastal waters, and it increased in the deep-sea area. [ABSTRACT FROM AUTHOR]

The spatial distribution of picocyanobacteria at the arctic longitude section passing through the shelf of the Kara, Laptev, and East Siberian seas from 58° to 168° E was studied. The average abundance of picocyanobacteria was 0.48 ± 1.2 × 109 cells/m3 in the Kara Sea, 0.16 ± 0.24 × 109 cells/m3 in the Laptev Sea, and 0.25 ± 0.43 × 109 cells/m3 in the East Siberian Sea. The fluctuations of picocyanobacterial abundance were determined by their presence in allochthonous sources: river flow and transformed North Atlantic waters. The highest abundance was observed in the areas of the runoff influence of the Ob, Khatanga, Indigirka, and Kolyma Siberian rivers: 0.5 × 109, 0.2 × 109, 0.4 × 109, and 1.6 × 109 cells/m3, respectively. The average contribution of picocyanobacteria to the total abundance and biomass of picophytoplankton in the western part of the Kara Sea was 37 and 36%, respectively. In other regions, the average contribution of picocyanobacteria to the total abundance and biomass of phototrophic picoplankton did not exceed 7 and 6%, respectively. A highly reliable (p 0.01) positive correlation between the abundance and biomass of picocyanobacteria and the water temperature (p = 0.003) was revealed in the entire dataset obtained. [ABSTRACT FROM AUTHOR]

The naupliar forms are important intermediaries between microbial and classical food web as they can efficiently graze on autotrophic picophytoplankton and heterotrophic bacteria in diverse aquatic ecosystems. Current knowledge on feeding behavior of the naupliar grazing on picophytoplankton is limited and need to be explored. Nauplii (NII and NIII instar) of Amphibalanus amphitrite and Artemia salina were used as candidate grazer organisms in feeding experiments in the presence of picophytoplankton Synechococcus. Substantial grazing was observed from these two instars, and feeding behavior exhibited typical Holling type III functional response. At low prey concentration, the adapted foraging technique during food acquisition by the nauplii of both grazers pointing toward sigmoid type III is best suited than the other functional response types. However, lower carbon ingestion rate of NIII than NII and survival only up to NIV instar indicate that picophytoplankton are unable to meet the energy requirement for advanced instar stages of both the grazers. These inferences suggest that picophytoplankton occupy a key position in naupliar diet and should be taken into consideration when assessing mesozooplankton grazing and food web dynamics. [ABSTRACT FROM AUTHOR]

Picophytoplankton were investigated during spring 2015 and 2016 extending from near‐shore coastal waters to oligotrophic open waters in the eastern Indian Ocean (EIO). They were typically composed of Prochlorococcus (Pro), Synechococcus (Syn), and picoeukaryotes (PEuks). Pro dominated most regions of the entire EIO and were approximately 1–2 orders of magnitude more abundant than Syn and PEuks. Under the influence of physicochemical conditions induced by annual variations of circulations and water masses, no coherent abundance and horizontal distributions of picophytoplankton were observed between spring 2015 and 2016. Although previous studies reported the limited effects of nutrients and heavy metals around coastal waters or upwelling zones could constrain Pro growth, Pro abundance showed strong positive correlation with nutrients, indicating the increase in nutrient availability particularly in the oligotrophic EIO could appreciably elevate their abundance. The exceptional appearance of picophytoplankton with high abundance along the equator appeared to be associated with the advection processes supported by the Wyrtki jets. For vertical patterns of picophytoplankton, a simple conceptual model was built based upon physicochemical parameters. However, Pro and PEuks simultaneously formed a subsurface maximum, while Syn generally restricted to the upper waters, significantly correlating with the combined effects of temperature, light, and nutrient availability. The average chlorophyll a concentrations (Chl a) of picophytoplankton accounted for above 49.6% and 44.9% of the total Chl a during both years, respectively, suggesting that picophytoplankton contributed a significant proportion of the phytoplankton community in the whole EIO. [ABSTRACT FROM AUTHOR]

An in situ mesocosm experiment was performed to investigate the combined effects of ocean acidification and warming on the coastal phytoplankton standing stock and species composition of a eutrophic coastal area in the temperate-subtropical region. Experimental treatments of natural seawater included three CO2 and two temperature conditions (present control: ~400 μatm CO2 and ambient temperature, acidification conditions: ~900 μatm CO2 and ambient temperature, and greenhouse conditions: ~900 μatm CO2 and ambient temperature +3 °C). We found that increased CO2 concentration benefited the growth of small autotrophic phytoplankton groups: picophytoplankton (PP), autotrophic nanoflagellates (ANF), and small chain-forming diatoms (DT). However, in the greenhouse conditions, ANF and DT abundances were lower compared with those in the acidification conditions. The proliferation of small autotrophic phytoplankton in future oceanic conditions (acidification and greenhouse) also increased the abundance of heterotrophic dinoflagellates (HDF). These responses suggest that a combination of acidification and warming will not only increase the small autotrophic phytoplankton standing stock but, also, lead to a shift in the diatom and dinoflagellate species composition, with potential biogeochemical element cycling feedback and an increased frequency and intensity of harmful algal blooms.

Okinawa is the southwesternmost part of Japan and represents the northern limit of coral reefs that are influenced by the Kuroshio warm current. We have been studying two coral reefs off Sesoko Island, in northern Okinawa, to evaluate coral reef environments since 2014. In this study, we applied a metagenomic approach to analyze the seasonal composition of picophytoplankton at these two reef sites (Sesoko Minami and Ishikawabaru). The two sites were selected for their differences: Sesoko Minami faces the open ocean and experiences relatively small land effects, while Ishikawabaru experiences relatively high land effects and is surrounded by barrier reefs. Seawater samples were collected from these two sites and filtered through a 1.6 μm pore filter followed by a 0.2 μm membrane filter. DNA was extracted from the 0.2 μm filters, and the V1-V2 region of the 16S rRNA gene (260 bp) was amplified before sequencing using next-generation sequencing techniques. Cyanobacteria or chloroplast sequences were selected for further metabarcording analyses. Interestingly, almost no differences were indicated between the two sites and more than 95% of the picophytoplankton at both sampling sites was composed of only 5 to 7 OTUs. The seasonal composition of picophytoplankton clearly changed; in summer (Jul 2014, May to Jul 2015, and May to Aug 2016) OTU 1 (Synechococcus sp. NC007513) was most abundant. OTU 4 (Prochlorococcus marinus NC009091) also reached its maximum abundance in summer (May to Aug 2016), while OTU 6 (Bathycoccous prasinos FN563099) increased in winter. OTU 8 (Micromonas commoda RCC299 FJ858267) was present at every sampling period and accounted for 5-20% of the total picophytoplankton contig numbers. Our results indicate that seasonal changes clearly influence fluctuations in picophytoplankton community compositions. [ABSTRACT FROM AUTHOR]

Abstract Seasonal dynamic of Utermöhl fraction of phytoplankton (UFP, cell size > 3 μm) and picophytoplankton (Pico, cell size < 3 μm) were compared in three eutrophic coastal lagoons located in the same geographical area (Western Mediterranean Sea). Considering data on density, biomass, volume and composition of each size class, we focused on three aspects: i) the contribution of UFP and Pico to total phytoplankton; ii) the responses of UFP and Pico to seasonal variations of selected environmental variables; iii) the identification of the main environmental drivers of UFP and Pico seasonal dynamics. Pico contribution to total phytoplankton density was from 20% to 90%, highlighting the potential importance of Pico also in eutrophic ecosystems. Pico contribution to total phytoplankton biomass was lower, from 9% to 16%. Statistically, temperature resulted the strongest environmental factor controlling both the UFP and Pico seasonal variations in all the studied lagoons. In addition, the role of salinity, water transparency and nutrient concentrations was important in relation to the study site and the size class considered. In this work, the effects of temperature, salinity, transparency and nutrient availability on two different phytoplankton size classes have been described in Mediterranean shallow coastal lagoons for the first time, providing new insight for this ecosystem typology worldwide. Graphical abstract Image 1 Highlights • Potential importance of picophytoplankton in eutrophic ecosystems was established. • Temperature was the strongest driver of seasonal cell size structure. • Role of salinity, transparency and nutrients was size- and site-specific. • Synergic interaction of several drivers affected seasonal cell size structure. [ABSTRACT FROM AUTHOR]

Abstract The Great Australian Bight (GAB) is a region of great economic and ecological importance to southern Australia, supporting fisheries of national and international importance, and large populations of small pelagic fish and iconic apex predators. There is, however, limited information on the plankton forming the base of the food web and their links to higher trophic levels in the GAB. Bacteria [inclusive of Archaea ], picophytoplankton (Prochlorococcus , Synechococcus and picoeukaryotes) and viruses were investigated in the central through to the eastern GAB for the first time, across five shelf edge to offshore transects in the austral Autumn of 2013. Downwelling conditions were evident over the region prior to and during the study period. Prochlorococcus numerically dominated picophytoplankton, exceeding Synechococcus and picoeukaryotes on average, by 5-fold and 30-fold respectively. Synechococcus and picoeukaryotes showed a clear shelf edge to offshore trend with highest abundances occurring at the shelf edge. Bacterial abundances showed low variation over the region, but with highest percent of high DNA bacteria (%HDNA) occurring at the shelf edge. Viral abundances closely followed bacteria, however individual viral groups were positively correlated with picophytoplankton groups, suggesting all picoplankton groups were subject to viral infection in GAB waters. Highest total picoplankton biomass occurred in surface waters at the shelf edge (26.5 ± 1.49 µg C L−1), with picophytoplankton carbon biomass (PB) and bacterial carbon biomass (BB) each accounting for ~50% of the total picoplankton biomass in the upper 60 m of the water column. Total picoplankton biomass was ~2-fold lower offshore waters, with BB comprising the bulk of the biomass (~72%). For the upper 60 m of the water column, picoeukaryotes accounted for ~51% of PB at the shelf edge, compared to ~24% in offshore waters. Based on our estimated C:Chl a ratios, picoeukaryotes accounted for 32.7 ± 3.0% of Chl a at the shelf edge, compared to 9.1 ± 0.6% in offshore waters. Prochlorococcus dominated PB in offshore waters (~67%), accounting for ~28% of Chl a. Multivariate analyses showed that the best predictors of the picoplankton community were a combination of nitrate and salinity (ρ = 0.704), indicating strong environmental forcing of the picophytoplankton community across the GAB. The elevated PB at the shelf edge, due to the dominance of picoeukaryotes, was a regional feature of the central and eastern GAB during the time of this study. We hypothesize that picoeukaryotes play a critical role in supporting higher trophic levels in GAB shelf edge waters. This study highlights the importance of small plankton in food web dynamics in GAB waters. [ABSTRACT FROM AUTHOR]

In parallel to phytoplankton community dynamics, transparent exopolymeric particles (TEP) and exopolymeric substances (EPS) were investigated along the salinity gradient of a temperate estuary (Seine estuary, Normandy, France) over the course of a year. The phytoplankton community was mainly dominated by marine diatom species (especially Skeletonema sp., Nitzschia sp., and Paralia sulcata ) associated with a spring bloom of pico-eukaryotes and the development of Cryptophyceae in summer. The decreases in species richness and salinity were correlated along the estuary and a significant exponential relationship between species richness and primary production was identified. Concentrations of TEP and EPS (soluble and bound carbohydrates) are highly dynamic in this estuary and can reach respectively 69 mgC L −1 , and 33 mgC L −1 . TEP distribution was mainly related to physical factors (hydrodynamics, maximum turbidity zone formation and sediment resuspension) probably produced by stressed or dying phytoplankton, while EPS appeared to be excreted during the phytoplankton spring bloom. Soluble and bound EPS appear to be related to Skeletonema sp. and Cryptophyceae occurrences. This paper presents the dynamic pattern of these carbon pools, which play an important role in the trophic network and influence the flocculation processes involved in the fate of both organic and inorganic matter. [ABSTRACT FROM AUTHOR]

The Yellow Sea Cold Water Mass (YSCWM) is the most prominent oceanographic phenomenon in the bottom layer of the Yellow Sea. A subsurface chlorophyll maximum (SCM) has been widely observed in this area, yet it has only been briefly described in previous research. In this study, we present the first in-depth analysis of the spatial distribution and intrinsic characteristics of the SCM in the YSCWM, based on two comprehensive cruises conducted in the central Yellow Sea during August 2011 and July 2013. In general, the spatial distribution of the SCM coincides approximately with the YSCWM area during the stratified seasons, with the southern boundary at around 33.5°N and the western boundary at approximately 122.5°E. The vertical position of the SCM varied between 12 and 29 m and 13–25 m during August 2011 and July 2013 respectively, which is mainly located within or at the bottom of the thermocline and the upper part of the nitracline. The averaged Chl a concentration in the SCM was 1.24 ± 0.27 mg m −3 and 1.92 ± 0.65 mg m −3 respectively during the two cruises. The shallower but stronger intensity characteristics are consistent with the meso-trophic status of the Yellow Sea. Picophytoplankton, composed of Synechococcus and picoeukaryotes, dominated the phytoplankton community in cell abundance and carbon biomass, contributing > 90%. The micro- and nanophytoplankton were almost completely dominated by dinoflagellate species. The phytoplankton community at the SCM depth was not significantly different from that in the surface mixed layer, while the relatively higher photosynthetic yields ( F v /F m ) indicated the active growth of the phytoplankton assemblage in the SCM layer. Significantly lower carbon-to-chlorophyll a ratios estimated in the SCM layer suggest that the main contribution originates from photoacclimation. Our results demonstrate that the active photosynthesis of the phytoplankton combined with their physiological photo-acclimation are the main formation mechanisms of the SCM. We also suggest that the vertical migration of motile dinoflagellates is an additional contributing factor to the SCM in the YSCWM area. A higher vertical sampling resolution and 1-D physical-biological modeling are needed in future studies to confirm our hypothesis and quantify the contributions of the different formation mechanisms in the YSCWM area. [ABSTRACT FROM AUTHOR]

Phytoplankton size-fractionated biomass is an important determinant of the type of food web functioning in aquatic ecosystems. Knowledge about the effect of seasonal salinity gradient on the size-fractionated biomass dynamics is still lacking, especially in tropical estuaries experiencing monsoon. The phytoplankton size-fractionated chlorophyll a biomass (>3 μm and <3 μm) and picophytoplankton community structure were characterized in the monsoonal Zuari estuary, along the west coast of India, from October 2010 to September 2011 across the salinity gradient (0–35). On an annual scale, >3 μm size-fraction was the major contributor to the total phytoplankton chlorophyll a biomass with the ephemeral dominance of <3 μm size-fraction. During monsoon season, freshwater runoff and shorter water residence time resulted in a size-independent response. The lowest annual chlorophyll a biomass concentration of both size-fractions showed signs of recovery with increasing salinity downstream towards the end of the monsoon season. In contrast, the chlorophyll a biomass response was size-dependent during the non-monsoon seasons with the sporadic dominance (>50%) of <3 μm chlorophyll a biomass during high water temperature episodes from downstream to middle estuary during pre-monsoon and at low salinity and high nutrient conditions upstream during post-monsoon. These conditions also influenced the picophytoplankton community structure with picoeukaryotes dominating during the pre-monsoon, phycoerythrin containing Synechococcus during the monsoon and phycocyanin containing Synechococcus during the post-monsoon. This study highlights switching over of dominance in size-fractionated phytoplankton chlorophyll a biomass at intra, inter-seasonal and spatial scales which will likely govern the estuarine trophodynamics. [ABSTRACT FROM AUTHOR]

The abundance and biomass of bacterioplankton, phototrophic picoplankton, and heterotrophic nanoflagellates has been determined in lakes, rivers, and reservoirs located in the Valley of the Lakes and Great Lakes Depression (Mongolia). The species richness of the heterotrophic flagellates and their consumption of bacteria are estimated. Pico- and nanoplankton are the most abundant in shallow mineral lakes Orog and Tatsyn and in the freshwater Durgun Reservoir. Heterotrophic nanoflagellates consume 26-92% (on average 66%) of the daily bacterioplankton production. Thus, flagellates are important in the transfer of bacterial carbon to the higher levels of planktonic trophic webs. A total of 30 species and their forms of heterotrophic flagellates from 14 large taxa are identified. The highest species diversity of these protists are found in the Durgun and Taishyr reservoirs. [ABSTRACT FROM AUTHOR]

Biomass of photosynthetic picoplankton (Bpic), its contribution to the total phytoplankton biomass (Bpic%), chlorophyll a concentration (Chl), and associated hydrophysical characteristics of the water masses in the White Sea were estimated in June 2015 at 47 stations located in the open parts and in the inlets of the Onega and Kandalaksha Bays and in the western part of the Basin. Spatial variability of mean values of Bpic in the photic layer (0.01-1.91 mg C/m3) was preconditioned by sub- and mesoscale heterogeneity of the hydrological conditions. The values of Bpic were higher near the frontal zones than those in the water masses characterized by quasi-homogeneous distribution of the thermohaline characteristics. The relative contribution of Bpic did not exceed 1% at half of the stations and varied from 1 to 8% for the rest of the studied water area. The value of Bpic% reached 40.5% in the Basin and did not exceed 2% during the phytoplankton bloom in Knyazhaya Inlet (Chl > 3 mg/m3) accompanied by the dominance of Skeletonema costatum sensu lato. [ABSTRACT FROM AUTHOR]

We investigated at the single cell level during 16 months (June 2012 to September 2013) the temporal distribution of picophytoplankton (picoeukaryotes, Synechococcus and Prochlorococcus ) communities in two contrasted ecosystems: the Bay of Bizerte characterised by an oligotrophic regime typical of the Mediterranean Sea and the Bizerte Lagoon that exhibits a mesotrophic/eutrophic state. We aimed at depicting seasonal variations and quantifying the relationships between the environmental factors and the structure and abundance of picophytoplankton communities. Results showed that picophytoplankton groups were able to grow under a wide range of environmental conditions varying seasonally, although their abundances and contributions to the total chlorophyll biomass significantly varied and showed importance in the Bay of Bizerte. Synechococcus was the most abundant group reaching 225 ∗ 10 3 cells·cm − 3 in the Bay and 278 ∗ 10 3 cells·cm − 3 in the lagoon. This group was present all over the year in both ecosystems. Structural equation model results pointed out a different configuration regarding the picophytoplankton environmental drivers. The complexity of the configuration, i.e. number of significant links within the system, decreased under enhanced eutrophication conditions. The less exposure to anthropogenic stress, i.e. in the Bay of Bizerte, highlight a larger role of nutrient and hydrological conditions on the seasonal variations of picophytoplankton, whereas a negative effect of eutrophication on picophytoplankton communities was unveiled in the Bizerte Lagoon. We stress that such influence may be exacerbated under expected scenarios of Mediterranean warming conditions and nutrient release in coastal ecosystems. [ABSTRACT FROM AUTHOR]

The deepening of mixed layer and ensuing changes in optical and physicochemical properties of euphotic zone can influence phytoplankton community dynamics in the northeastern Arabian Sea during winter monsoon. The response of picophytoplankton community to such changes during winter convective mixing is not well understood. Herein, we have compared variations in the picophytoplankton community structure during early (November–December 2012), peak (end-January 2014) and late (mid-February 2015) winter monsoon from three separate cruises in the southern northeastern Arabian Sea. The higher Synechococcus abundance owing to entrainment of nutrients in mixed layer was observed during peak winter monsoon, while the concomitant changes in nitrate concentration, light and oxygen environment restricted Prochlorococcus growth resulting in lower abundance during the same period. This highlights the diverse responses of picophytoplankton groups to physicochemical changes of water column during winter convective mixing. The divinyl chlorophyll b / a ratio (marker for Prochlorococcus ecotypes) indicated prevalence of one low-light adapted ecotype (sensitive to light shock) in sub-surface water, one high-light adapted ecotype in surface water during early winter monsoon and both disappeared during intense mixing period in peak winter monsoon. Subsequently, a distinct low-light adapted ecotype, capable to tolerate light shock, was noticed during late winter monsoon and we argue that this ecotype is introduced to southern northeastern Arabian Sea through advection from north by sub-surface circulation. The total picophytoplankton biomass available to microbial loop is restored during late winter monsoon, when stratification begins, with a higher abundance of Synechococcus and the re-occurrence of Prochlorococcus population in the region. These inferences indicate that variability in picophytoplankton community structure and their contribution to the microbial loop are driven by convective mixing and advection, which in turn influence ecosystem functioning and trophodynamics of the southern northeastern Arabian Sea. [ABSTRACT FROM AUTHOR]

A comprehensive analysis on the phytoplankton ecology with special reference to different phytoplankton size classes was carried out at green Noctiluca scintillans (hereafter Noctiluca ) bloom and non-bloom locations in offshore waters of the northern Arabian Sea. At the bloom locations, green Noctiluca represented a dense mono-specific proliferation with average cell density of 10.16 ± 5.806 × 10 4  cells-L −1 and relative abundance share of 98.63%. Active photosynthesis through prasinophytic endosymbiont was depicted from net community production magnitude reaching 85.26 mgC/m 3 /Day under low prey abundance. Parallel swarming of Porpita porpita , a voracious copepod feeder signified the competitive advantage of Noctiluca to have the phytoplankton prey. Average concentration of picophytoplankton biomass was eleven times lower in surface waters of non-bloom stations in comparison to bloom. Higher N:P ratio in subsurface waters of non-bloom stations signified non-utilization of nitrogenous nutrients. Green Noctiluca bloom onset subsequent to diatom rich conditions was evident from spatio-temporal ocean colour satellite imageries. [ABSTRACT FROM AUTHOR]

Mesoscale eddies have been reported to have a substantial impact on the distribution of phytoplankton through the regulation of environmental variables in the open ocean. However, the influence of warm eddies on phytoplankton in continental slopes remains largely unknown. To reveal the impact of mesoscale eddies within slope regions, we conducted a field investigation of picophytoplankton on the northern slope of the South China Sea during an anticyclonic warm eddy propagation. We observed different picophytoplankton distribution patterns. Synechococcus dominated the picophytoplankton community in the Kuroshio-affected eddy core rather than the previously reported Prochlorococcus , and Prochlorococcus dominated outside the eddy in the shelf. In addition, through further vertical study of typical layers, we found that the influence of warm eddy varied in different layers. Analysis of the mechanisms indicated that the distributions were attributed to warm eddy-induced nutrients and light variations and the physical processes in it. [Display omitted] • Analysis of warm eddy impacts on picophytoplankton in South China Sea slope area • Different distribution pattern of picophytoplankton was observed. • The warm eddy changed the distribution of nutrients and light intensity. • The warm eddy affected the composition of water masses. • The distribution of picophytoplankton was influenced by physical-chemical variations. [ABSTRACT FROM AUTHOR]

The differences among phytoplankton carbon (Cphy) predictions from six ocean color algorithms are investigated by comparison with in situ estimates of phytoplankton carbon. The common satellite data used as input for the algorithms is the Ocean Color Climate Change Initiative merged product. The matching in situ data are derived from flow cytometric cell counts and per-cell carbon estimates for different types of pico-phytoplankton. This combination of satellite and in situ data provides a relatively large matching dataset (N > 500), which is independent from most of the algorithms tested and spans almost two orders of magnitude in Cphy. Results show that not a single algorithm outperforms any of the other when using all matching data. Concentrating on the oligotrophic regions (Chlorophyll-a concentration, B, less than 0.15 mg Chl m−3), where flow cytometric analysis captures most of the phytoplankton biomass, reveals significant differences in algorithm performance. The bias ranges from −35 to +150% and unbiased root mean squared difference from 5 to 10 mg C m−3 among algorithms, with chlorophyll-based algorithms performing better than the rest. The backscattering-based algorithms produce different results at the clearest waters and these differences are discussed in terms of the different algorithms used for optical particle backscattering coefficient (bbp) retrieval.

Picophytoplankton are acknowledged to contribute significantly to primary production (PP) in the ocean while now the method to measure PP of picophytoplankton (PPPico) at large scales is not yet well established. Although the traditional 14C method and new technologies based on the use of stable isotopes (e.g., 13C) can be employed to accurately measure in situ PPPico, the time-consuming and labor-intensive shortage of these methods constrain their application in a survey on large spatiotemporal scales. To overcome this shortage, a modified carbon-based ocean productivity model (CbPM) is proposed for estimating the PPPico whose principle is based on the group-specific abundance, cellular carbon conversion factor (CCF), and temperature-derived growth rate of picophytoplankton. Comparative analysis showed that the estimated PPPico using CbPM method is significantly and positively related (r2 = 0.53, P < 0.001, n = 171) to the measured 14C uptake. This significant relationship suggests that CbPM has the potential to estimate the PPPico over large spatial and temporal scales. Currently this model application may be limited by the use of invariant cellular CCF and the relatively small data sets to validate the model which may introduce some uncertainties and biases. Model performance will be improved by the use of variable conversion factors and the larger data sets representing diverse growth conditions. Finally, we apply the CbPM-based model on the collected data during four cruises in the Bohai Sea in 2005. Model-estimated PPPico ranged from 0.1 to 11.9, 29.9 to 432.8, 5.5 to 214.9, and 2.4 to 65.8 mg C m-2 d-1 during March, June, September, and December, respectively. This study shed light on the estimation of global PPPico using carbon-based production model.

In the present work, we review the current knowledge on genesis, limnology and biodiversity of salt lakes distributed around the inner contour of Eastern Carpathian arc (Transylvanian Basin, Central Romania). Transylvanian salt lakes formed on ancient halite (NaCl) deposits following natural processes or quarrying activities. Most of these lakes are located in eastern (Sovata area), southern (Ocna Sibiului), and western (Turda-Cojocna) parts of the Transylvanian Basin, have small surfaces (0.1-4 ha), variable depths (2-100 m), are hypersaline (>10%, w/v, total salts, mainly NaCl) and permanently stratified. As consequence of steady salinity/density gradient, heat entrapment below surface layer (i.e., heliothermy) develops in several Transylvanian lakes. The physical and chemical water stratification is mirrored in the partition of plankton diversity. Lakes with less saline (2-10% salinity) water layers appear to harbor halotolerant representatives of phyto- (e.g., marine native Picochlorum spp. and Synechococcus spp.), zoo- (e.g., Moina salina), and bacterioplankton (e.g., Actinobacteria, Verrucomicobia), whereas halophilic plankton communities (e.g., green algae Dunaliella sp., brine shrimp Artemia sp., and members of Halobacteria class) dominate in the oxic surface of hypersaline (>10% salinity) lakes. Molecular approaches (e.g., PCR-DGGE, 16S rRNA gene-based clone libraries, and DNA metabarcoding) showed that the O2-depleted bottom brines of deep meromictic Transylvanian lakes are inhabited by known extremely halophilic anaerobes (e.g. sulfate-reducing Delta-Proteobacteria, fermenting Clostridia, methanogenic and polymer-degrading archaea) in addition to representatives of uncultured/unclassified prokaryotic lineages. Overall, the plankton communities thriving in saline Transylvanian lakes seem to drive full biogeochemical cycling of main elements. However, the trophic interactions (i.e., food web structure and energy flow) as well as impact of human activities and predicted climate changes are yet to be assessed in these unique ecosystems with little or no match to analogous salt lakes worldwide.

In the present work, we review the current knowledge on genesis, limnology and biodiversity of salt lakes distributed around the inner contour of Eastern Carpathian arc (Transylvanian Basin, Central Romania). Transylvanian salt lakes formed on ancient halite (NaCl) deposits following natural processes or quarrying activities. Most of these lakes are located in eastern (Sovata area), southern (Ocna Sibiului), and western (Turda-Cojocna) parts of the Transylvanian Basin, have small surfaces (0.1-4 ha), variable depths (2-100 m), are hypersaline (>10%, w/v, total salts, mainly NaCl) and permanently stratified. As consequence of steady salinity/ density gradient, heat entrapment below surface layer (i.e., heliothermy) develops in several transylvanian lakes. The physical and chemical water stratification is mirrored in the partition of plankton diversity. lakes with less saline (2-10% salinity) water layers appear to harbor halotolerant representatives of phyto- (e.g., marine native Picochlorum spp. and Synechococcus spp.), zoo- (e.g., Moina salina), and bacterioplankton (e.g., Actinobacteria, Verrucomicobia), whereas halophilic plankton communities (e.g., green algae Dunaliella sp., brine shrimp Artemia sp., and members of Halobacteria class) dominate in the oxic surface of hypersaline (>10% salinity) lakes. Molecular approaches (e.g., PCR-DGGE, 16s rRNA gene-based clone libraries, and DNA metabarcoding) showed that the O2-depleted bottom brines of deep meromictic transylvanian lakes are inhabited by known extremely halophilic anaerobes (e.g. sulfate-reducing delta-Proteobacteria, fermenting clostridia, methanogenic and polymer-degrading archaea) in addition to representatives of uncultured/unclassified prokaryotic lineages. overall, the plankton communities thriving in saline transylvanian lakes seem to drive full biogeochemical cycling of main elements. However, the trophic interactions (i.e., food web structure and energy flow) as well as impact of human activities and predicted climate changes are yet to be assessed in these unique ecosystems with little or no match to analogous salt lakes worldwide. [ABSTRACT FROM AUTHOR]

The molecular diversity of poorly studied algae of Bolidophyceae class was first estimated by Illumina sequencing of V4 region of 18S rRNA gene in ice, under-ice water and summer water of the subarctic White Sea. We used two clustering thresholds-93 and 97%-and revealed 31 phylotypes of Bolidophyceae. Triparma pacifica and Т. strigata were identified to species level. The association of individual phylotypes to certain biotopes (ice or plankton) and stages of seasonal succession (under ice or summer plankton) has been established. Some phylotypes are found in different biotopes and over a wide temperature range. Due to changing their genetic composition, Bolidophyceae are a constant component of the photoautotrophic plankton and ice communities. [ABSTRACT FROM AUTHOR]

The eastern Arabian Sea over the continental margin is a dynamic region subjected to short-term variability in hydrography as a result of various physical forcing such as coastal advection and vertical mixing. In order to assess the influence of hydrography on the picophytoplankton community, a temporal high resolution (every 3 h for nine days) study was carried out at a fixed location (15° 18′ 46″N, 72° 41′ 53″E) in the eastern Arabian Sea during the early north-east monsoon (November 2011). The picophytoplankton community comprised of Synechococcus , Prochlorococcus , and picoeukaryotes. Based on the temperature and salinity distribution, the study period was divided into phase I representing a stratified water column and phase II representing a vertically mixed water column. Phase I had higher picophytoplankton abundance with the initial dominance of Prochlorococcus which was later taken over by picoeukaryotes. Towards the end of phase I, with the initiation of vertical mixing, picoeukaryotes were the first to respond to the nutrient influx. As the vertical mixing intensified during phase II, the picophytoplankton abundance declined. Picophytoplankton carbon biomass and their contribution to total phytoplankton biomass was relatively higher during phase I with picoeukaryotes as the major contributors. These transient variations in picophytoplankton abundance highlights the importance of high frequency observations at the single cell level for better understanding the population dynamics in such environments. [ABSTRACT FROM AUTHOR]

The temporal β diversity of small eukaryotic phytoplankton in a tropical urban coastal lagoon (Rodrigo de Freitas Lagoon, Brazil) was characterized throughout two annual cycles (2012-2103) with twice-weekly sampling. Small eukaryotic phytoplankton (<20 μm) were very abundant (above 1 × 10³ and up to 6.2 × 105 cells mL-1). Small eukaryotes were also the most diverse phytoplankton group, showing high temporal variability at the species level that was represented by seven taxonomic divisions. Temporal β diversity was positively related to environmental heterogeneity on a short-time scale. Although abundance peaks of the main species were positively related to NH4 inputs, selection of species ultimately depended on the simultaneous interaction among several physical-chemical variables acting hierarchically on different temporal scales (first seasonally and then on a short-time scale). Considering the numerical importance of small size fraction phytoplankton, information relevant to the management and conservation of coastal lagoons could be incomplete if the floristic composition and temporal species turnover of pico- and nanophytoplankton species are not properly determined. [ABSTRACT FROM AUTHOR]

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Picophytoplankton (Pico) seasonal dynamics and ecology were investigated in three eutrophic coastal lagoons (Calich, Santa Giusta, and Corru S'Ittiri) located in the same geographic region (Sardinia, Mediterranean Sea). Pico dynamics were examined to determine a relationship with variability in environmental conditions characterizing the three sites, and identify which parameters affected observed Pico dynamics. Results showed Pico density reached 10 cells L and biomass values did not exceed 72.8 μg C L. Statistical analyses detected significant differences in hydrographic and nutrient conditions among lagoons, which were also characterized by variable Pico seasonal dynamics and composition. Calich and Santa Giusta were dominated all year around by picocyanobacteria. Maximum picocyanobacteria abundance was observed during summer in both lagoons, associated with the highest temperatures recorded. Picocyanobacteria abundance and nutrient concentrations showed a significant negative and positive correlation in Calich and Santa Giusta, respectively. In contrast, picoeukaryotes dominated Pico assemblages in Corru S'Ittiri, where the highest transparency and salinity and the lowest seasonal variation in salinity were recorded. In Corru S'Ittiri, the maximum Pico abundance was observed in autumn, when lower temperature and the highest nutrient concentrations were observed. Our study provides information on Pico assemblage ecology, which remains scarce in coastal and transitional environments, particularly in Mediterranean climate regimes. [ABSTRACT FROM AUTHOR]

Four surveys (Jun’06 and Nov’06; Feb’07 and May’07) were carried out on the northeastern shelf of the Gulf of Cádiz (southwest Iberian Peninsula) to relate the spatio-temporal distribution of the carbon cycle parameters (dissolved inorganic carbon and dissolved organic carbon) to picophytoplankton biomass and community composition. In addition, the net ecosystem production and the picophytoplankton contribution to the air-sea CO2 exchange process were investigated. The results showed that chlorophyll-a, carbon cycle parameters and picophytoplankton composition showed large seasonality, and the Guadalquivir Estuary plays an important role in the contribution of nutrient and suspended particular material over the year. Regarding picophytoplankton composition, the flow cytometry analysis demonstrated that Prochlorococcus and Synechococcus were the main populations in the studied area and their temporal and spatial distributions were complementary: the Prochlorococcus population showed its maximum concentration in May’07 and Jun’06 and in the surface oceanic water, whereas the Synechococcus population was at its maximum during Feb’07 and Nov’06, and off the Guadalquivir Estuary and Bay of Cádiz. In addition, a relationship between the studied parameters and the fugacity of CO2 was also observed, suggesting that primary production is an important factor in the regulation of this parameter in the studied area. The calculated carbon budget showed that the area acts as a carbon sink on an annual basis.

Picophytoplankton account for most of the marine (sub-)tropical phytoplankton biomass and primary productivity. The contribution to biomass among plankton functional types (PFTs) could shift with climate warming, in part as a result of different physiological responses to temperature. To model these responses, Eppley's empirical relationships have been well established. However, they have not yet been statistically validated for individual PFTs. Here, we examine the physiological response of nine strains of picophytoplankton to temperature; three strains of picoprokaryotes and six strains of picoeukaryotes. We conduct laboratory experiments at 13 temperatures between -0.5°C and 33°C and measure the maximum growth rates and the chlorophyll a to carbon ratios. We then statistically validate two hypotheses formulated by Eppley in 1972: the response of maximum growth rates to temperature (1) of individual strains can be represented by an optimum function, and (2) of the whole phytoplankton group can be represented by an exponential function. We also quantify the temperature-related parameters. We find that the temperature span at which growth is positive is more constrained for picoprokaryotes (13.7 - 27°C), than for picoeukaryotes (2.8 - 32.4°C). However, the modelled temperature tolerance range (ΔT) follows an unimodal function of cell size for the strains examined here. Thus, the temperature tolerance range may act in conjunction with the maximum growth rate to explain the picophytoplankton community size structure in correlation with ocean temperature. The maximum growth rates obtained by a 99th quantile regression for the group of picophytoplankton or picoprokaryotes are generally lower than the rates estimated by Eppley. However, we find temperature-dependencies (Q10) of 2.3 and of 4.9 for the two groups, respectively. Both of these values are higher than the Q10 of 1.88 estimated by Eppley and could have substantial influence on the biomass distribution in models, in particular if picoprokaryotes were considered an independent PFT. We also quantify the increase of the chlorophyll a to carbon ratios with increasing temperature due to acclimation. These parameters provide essential and validated physiological information to explore the response of marine ecosystems to a warming climate using ocean biogeochemistry models.

The species composition and size-structure of the phytoplanktoncommunity in the Boka Kotorska Bay (SE Adriatic Sea) were analysed withrespect to abundance and carbon biomass, together with the physico-chemicalparameters, with the aim of evaluating the predefined oligo-mesotrophicstatus of this transitional water ecosystem. Three stations locatedin the inner part of the Bay were sampled with seasonal frequencyin 2008/2009. Picophytoplankton cells were counted using flowcytometry; nanophytoplankton and microphytoplankton were identifiedand counted by light microscopy. The relative importance of thepicoplankton in the Bay, in terms of both abundance and biomass,during all the investigated seasons emphasized their significancein the phytoplankton community. Picocyanobacteria (Synechococcus)constituted a significant part of the summer assemblages withregard to both abundance (up to 3.38 × 108 cellsL-1)and carbon biomass (up to 73% of total phytoplankton carbon).The contribution of the nanophytoplankton was found to be generallylow (Skeletonema marinoi, dominated the microphytoplanktonfraction. S. marinoi was the most abundant in spring/winter(up to 2.86 imes 106 cells L-1) above the halocline(making a 96% contribution to the microphytoplankton). The potentiallytoxin-producing diatom Pseudo-nitzschia pseudodelicatissimawas recorded at abundances greater than 105 cells L-1, togetherwith Thalassionema frauenfeldii, as well as the dinoflagellatesProrocentrummicans and the potentially harmful P. minimum. The higher valuesof phytoplankton biomass and the dominance of phytoplankton speciesor groups with preferences for nutrient-enriched conditions appear tobe consistent with the oligo-mesotrophic status of this specific ecosystem.

We explored picophytoplankton in the surface (0 m) and bottom (2.3–8.7 m) layers of a shallow (<10 m) eutrophic coastal system (Isahaya Bay, Japan). We found that picophytoplankton (principally Synechococcus) constituted the major phytoplankton in spring and summer. The chlorophyll a (chl. a) concentration in the 0.7–2.0-μm picophytoplankton fraction (hereinafter 'pico-sized chl. a ') and picophytoplankton abundance in Isahaya Bay were higher than those in other eutrophic coastal waters. The pico-sized chl. a concentration and the picophytoplankton abundance counted with an epifluorescence microscope was up to 49.31 μg L−1 and 1.9 × 106 cells mL−1, respectively. Higher contributions of pico-sized chl. a to the total chl. a were evident in summer (up to 63.5%), relative to spring (up to 32.1%), at both depths. Picophytoplankton abundance and the pico-sized chl. a concentration was positively correlated with water temperature and dissolved inorganic phosphorus (DIP) concentrations. Thus, both temperature and DIP may be major controllers of picophytoplankton in Isahaya Bay. The pico-sized chl. a concentration and picophytoplankton cell number at the bottom layer were positively correlated with those in the surface layer, suggesting that picophytoplankton in bottom layers may have sunk from the surface layers. The results imply that the picophytoplankton affects the biogeochemical processes in the bottom of Isahaya Bay more than previously thought. This may be true not only for this estuary but also for other eutrophic coastal seas. • Picophytoplankton contributed considerably to the total phytoplankton biomass in spring and summer of a shallow, eutrophic coastal sea. • Higher contributions of pico-sized chl. a to the total chl. a were evident in summer (up to 63.5%), relative to spring (up to 32.1%), at both depths. • High amount of picophytoplankton may sink from the surface to accumulate in near-bottom layers. [ABSTRACT FROM AUTHOR]

Phytoplankton photosynthesis is often inhibited by ultraviolet ( UV) and intense photosynthetically available radiation ( PAR), but the effects on ocean productivity have received little consideration aside from polar areas subject to periodic enhanced UV-B due to depletion of stratospheric ozone. A more comprehensive assessment is important for understanding the contribution of phytoplankton production to the global carbon budget, present and future. Here, we consider responses in the temperate and tropical mid-ocean regions typically dominated by picophytoplankton including the prokaryotic lineages, Prochlorococcus and Synechococcus. Spectral models of photosynthetic response for each lineage were constructed using model strains cultured at different growth irradiances and temperatures. In the model, inhibition becomes more severe once exposure exceeds a threshold ( Emax) related to repair capacity. Model parameters are presented for Prochlorococcus adding to those previously presented for Synechococcus. The models were applied to estimate midday, water column photosynthesis based on an atmospheric model of spectral radiation, satellite-derived spectral water transparency and temperature. Based on a global survey of inhibitory exposure severity, a full-latitude section of the mid-Pacific and near-equatorial region of the east Pacific were identified as representative regions for prediction of responses over the entire water column. Comparing predictions integrated over the water column including versus excluding inhibition, production was 7-28% lower due to inhibition depending on strain and site conditions. Inhibition was consistently greater for Prochlorococcus compared to two strains of Synechococcus. Considering only the surface mixed layer, production was inhibited 7-73%. On average, including inhibition lowered estimates of midday productivity around 20% for the modeled region of the Pacific with UV accounting for two-thirds of the reduction. In contrast, most other productivity models either ignore inhibition or only include PAR inhibition. Incorporation of Emax model responses into an existing spectral model of depth-integrated, daily production will enable efficient global predictions of picophytoplankton productivity including inhibition. [ABSTRACT FROM AUTHOR]

šIn this study, we investigated the food sources of eastern oysters Crassostrea virginica cultivated in Atlantic Canada. Stable isotopes (13Cand 15N) and fatty acid biomarkerswere used to identify these sources under in situ conditions for suspended (~0.5mbelow surface) and bottom(~2m) culture stocks. It was found that particulate organic matter represented the main food source, with major contributions from live phytoplankton. Higher lipid contents were detected in the digestive glands of suspended oysters compared to bottom oysters (p<0.05). Bottom oysters did not show significant preference for detrital or bacterial organic matter. Near-surface waters contained an elevated picophytoplankton biomass (PPP, 0.2-2mm, 1.93 ± 0.16µg l-1, mean ± SEM) compared to nanophytoplankton biomass (NPP, >2mm, 1.05 ± 0.15µg l-1, mean ± SEM). To determine whether the small size PPP was captured and assimilated by C. virginica, feeding trials were conducted in the laboratory using three PPP/NPP diets (20%, 50%, and 80% PPP), consisting of isotopically-labelled (d13C) PPP cells (Nannochloropsis oculata) and non-labelled NPP cells (Tisochrysis lutea). An isotopically-labelled fatty acids analysis indicated PPP assimilation in various tissues (digestive gland, gills, mantle, and abductor muscle), including from oysters fed the reduced (20%) PPP diet. Isotopic enrichment (13C) in the FA22:2 (non-methylene-interrupted orNMI) showed that precursors of NMIs utilized PPP carbon in its biosynthesis process. In conclusion, C. virginica assimilated primarily particulate organic matter (POM), including PPP, which dominated the phytoplankton community in near surface waters. C. virginica can exploit PPP carbon during fatty acid production and further biosynthesis. [ABSTRACT FROM AUTHOR]

Intact polar diacylglycerols (IP-DAGs) are essential components of cell membranes. Because they are structurally diverse and hypothesized to represent primarily living cells, they are potential molecular markers for a recent contribution by microbial communities to various carbon reservoirs. This study employed a novel molecular networking approach to investigate the evolution of IP-DAG structural diversity with depth in an ultraoligotrophic environment of the western South Pacific Ocean to test the hypothesis that particle transport to depth is rapid enough to preserve the IP-DAG biomarker signature of the photosynthetic community. IP-DAG profiles of several cultured cyanobacteria and photosynthetic picoeukaryotes were used as templates for constructing molecular networks to compare and interpret IP-DAG signatures of suspended particles isolated from a water column depth profile. Analysis of corresponding genetic community composition data for the same field samples was used to connect IP-DAG structures with their likely biological sources. Our data show that, although most IP-DAG classes associated with photosynthetic organisms were not observed below the euphotic zone, several other IP-DAG classes in deep samples might provide interesting targets for future studies seeking to examine the in situ contribution of deep sea microbes to suspended particulate organic matter (POM). Overall, the results represent the deepest water column IP-DAG dataset to date and demonstrate the utility of molecular networking for analyzing and visualizing complex environmental datasets. [ABSTRACT FROM AUTHOR]