257 results on '"Perilla, Juan R."'
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52. Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly
53. Structural basis for the homotypic fusion of chlamydial inclusions by the SNARE-like protein IncA.
54. High-Performance Analysis of Biomolecular Containers to Measure Small-Molecule Transport, Transbilayer Lipid Diffusion, and Protein Cavities
55. MxB Restricts HIV-1 by Targeting the Tri-hexamer Interface of the Viral Capsid
56. FEZ1 Is Recruited to a Conserved Cofactor Site on Capsid to Promote HIV-1 Trafficking
57. Structural basis for the homotypic fusion of chlamydial inclusions by the SNARE-like protein IncA
58. Exploring the Mechanism of Action of Membrane Fusion Protein IncA Using Molecular Dynamics Simulations
59. Energetics of Nucleotides Translocation through HIV-1 CA Hexamer
60. GPU Accelerated Computation of Isotropic Chemical Shifts Offers New Dimension of Structure Refinement in Largescale Molecular Dynamics Simulation
61. Understanding Protein HD Exchange Data using Molecular Dynamics Simulations
62. Molecular Dynamics Simulations of an Entire HIV Virion
63. High-Throughput Refinement of CryoEM-Based Structures
64. Molecular Mechanism of Potent Capsid-Targeting Antiretroviral Drugs
65. Chapter 11 - GPU-accelerated molecular dynamics clustering analysis with OpenACC
66. All-atom virus simulations
67. Critical Role of the Human T-Cell Leukemia Virus Type 1 Capsid N-Terminal Domain for Gag-Gag Interactions and Virus Particle Assembly
68. All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits
69. Author response: All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits
70. Atomic-Level Characterization of the HIV-1 Capsid and Host-Pathogen Interactions from Molecular Dynamics Simulations
71. Quenching protein dynamics interferes with HIV capsid maturation
72. Length of encapsidated cargo impacts stability and structure ofin vitroassembled alphavirus core-like particles
73. CryoEM structure of MxB reveals a novel oligomerization interface critical for HIV restriction
74. Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulations
75. CryoEM structure of dynamin-like MxB in assembly
76. CryoEM Structure Refinement by Integrating NMR Chemical Shifts with Molecular Dynamics Simulations
77. Cryoem Structure of the Full Length Dynamin-Like MxB at 4.6 Å Resolution
78. HIV-1 Capsid Function Is Regulated by Dynamics: Quantitative Atomic-Resolution Insights by Integrating Magic-Angle-Spinning NMR, QM/MM, and MD
79. Contributions of Charged Residues in Structurally Dynamic Capsid Surface Loops to Rous Sarcoma Virus Assembly
80. All-Atom Molecular Dynamics of Virus Capsids as Drug Targets
81. Molecular Architecture of the Retroviral Capsid
82. Cyclophilin A stabilizes the HIV-1 capsid through a novel non-canonical binding site
83. Elucidating the Structure, Dynamics and Functions of an Immature Retrovirus in Atomistic Detail
84. Dynamic regulation of HIV-1 capsid interaction with the restriction factor TRIM5α identified by magic-angle spinning NMR and molecular dynamics simulations.
85. CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling
86. Author response: CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling
87. Atomic Modeling of an Immature Retroviral Lattice Using Molecular Dynamics and Mutagenesis
88. Molecular dynamics simulations of large macromolecular complexes
89. Molecular Insights into the Signaling Mechanism of the Histidine Kinase CheA within an Intact Bacterial Chemosensory Array
90. Cryo-Electron Tomography and Computer Simulations Reveal Distinct CheA Kinase Conformation in Bacterial Chemotaxis Signaling Receptor Complex
91. Cyclophilin a Stabilizes the Mature HIV-1 Capsid through a Novel Non-Canonical Binding Site
92. Atomistic Characterization of the HIV Capsid from Molecular Dynamics Simulations
93. Quenching protein dynamics interferes with HIV capsid maturation.
94. Computing Ensembles of Transitions with Molecular Dynamics Simulations.
95. Molecular dynamics simulations of transitions for ECD epidermal growth factor receptors show key differences between human and drosophila forms of the receptors
96. HIV-1 Capsid Function Is Regulated by Dynamics: Quantitative Atomic-Resolution Insights by Integrating Magic-Angle-Spinning NMR, QM/MM, and MD.
97. Towards the prediction of order parameters from molecular dynamics simulations in proteins
98. Towards Finding a Better Reaction Coordinate: NtrC and DIMS
99. Dynamic Importance Sampling Calculations on ECD Epitelial Growth Factor Receptor Conformational Changes
100. Computing ensembles of transitions from stable states: Dynamic importance sampling
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