51. Molecular epidemiology and comparative genomics of Campylobacter concisus strains from saliva, faeces and gut mucosal biopsies in inflammatory bowel disease
- Author
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Guillaume Méric, Karina Frahm Kirk, Henrik Nielsen, Hans Linde Nielsen, Samuel K. Sheppard, Ole Thorlacius-Ussing, and Ben Pascoe
- Subjects
0301 basic medicine ,Adult ,Male ,Candidate gene ,Biopsy ,030106 microbiology ,Campylobacter concisus ,lcsh:Medicine ,Biology ,Article ,Microbiology ,03 medical and health sciences ,Feces ,Young Adult ,Campylobacter Infections ,Journal Article ,Humans ,Typing ,Saliva ,lcsh:Science ,Phylogeny ,Aged ,Comparative genomics ,Molecular Epidemiology ,Mouth ,Multidisciplinary ,Molecular epidemiology ,Genetic heterogeneity ,lcsh:R ,Genetic Variation ,Campylobacter ,Genomics ,Middle Aged ,biology.organism_classification ,Inflammatory Bowel Diseases ,Gastroenteritis ,Gastrointestinal Microbiome ,Phenotype ,Membrane biogenesis ,Multilocus sequence typing ,Female ,lcsh:Q ,Multilocus Sequence Typing - Abstract
Campylobacter concisus is an emerging pathogen associated with inflammatory bowel disease (IBD), yet little is known about the genetic diversity of C. concisus in relation to host niches and disease. We isolated 104 C. concisus isolates from saliva, mucosal biopsies and faecal samples from 41 individuals (26 IBD, 3 Gastroenteritis (GE), 12 Healthy controls (HC)). Whole genomes were sequenced and the dataset pan-genome examined, and genomic information was used for typing using multi-locus-sequence typing (MLST). C. concisus isolates clustered into two main groups/genomospecies (GS) with 71 distinct sequence types (STs) represented. Sampling site (p C. concisus and provides evidence that genomic variation is related to the source of isolation, but not clinical phenotype.
- Published
- 2018