51. The head and neck cancer cell oncogenome: a platform for the development of precision molecular therapies.
- Author
-
Martin D, Abba MC, Molinolo AA, Vitale-Cross L, Wang Z, Zaida M, Delic NC, Samuels Y, Lyons JG, and Gutkind JS
- Subjects
- Base Sequence, Cadherins genetics, Caspase 8 genetics, Cell Line, Tumor, Cell Proliferation, Class I Phosphatidylinositol 3-Kinases, Cyclin-Dependent Kinase 2 genetics, DNA Copy Number Variations genetics, Gene Dosage genetics, Gene Expression Profiling, Humans, PTEN Phosphohydrolase genetics, Papillomavirus Infections genetics, Phosphatidylinositol 3-Kinases genetics, Phosphatidylinositol 3-Kinases metabolism, Precision Medicine, Proto-Oncogene Proteins p21(ras) genetics, Receptor, Notch1 genetics, Sequence Analysis, DNA, Smad4 Protein genetics, Squamous Cell Carcinoma of Head and Neck, TOR Serine-Threonine Kinases metabolism, Transforming Growth Factor beta metabolism, Tumor Suppressor Protein p53 biosynthesis, Carcinoma, Squamous Cell genetics, Head and Neck Neoplasms genetics, Papillomaviridae genetics, Transcriptome genetics, Tumor Suppressor Protein p53 genetics
- Abstract
The recent elucidation of the genomic landscape of head and neck squamous cell carcinoma (HNSCC) has provided a unique opportunity to develop selective cancer treatment options. These efforts will require the establishment of relevant HNSCC models for preclinical testing. Here, we performed full exome and transcriptome sequencing of a large panel of HNSCC-derived cells from different anatomical locations and human papillomavirus (HPV) infection status. These cells exhibit typical mutations in TP53, FAT1, CDK2NA, CASP8, and NOTCH1, and copy number variations (CNVs) and mutations in PIK3CA, HRAS, and PTEN that reflect the widespread activation of the PI3K-mTOR pathway. SMAD4 alterations were observed that may explain the decreased tumor suppressive effect of TGF-β in HNSCC. Surprisingly, we identified HPV+ HNSCC cells harboring TP53 mutations, and documented aberrant TP53 expression in a subset of HPV+ HNSCC cases. This analysis also revealed that most HNSCC cells harbor multiple mutations and CNVs in epigenetic modifiers (e.g., EP300, CREBP, MLL1, MLL2, MLL3, KDM6A, and KDM6B) that may contribute to HNSCC initiation and progression. These genetically-defined experimental HNSCC cellular systems, together with the identification of novel actionable molecular targets, may now facilitate the pre-clinical evaluation of emerging therapeutic agents in tumors exhibiting each precise genomic alteration.
- Published
- 2014
- Full Text
- View/download PDF