205 results on '"Madej T"'
Search Results
52. Double‐blind comparison of epidural diamorphine and intramuscular morphine after elective Caesarean section, with computerised analysis of continuous pulse oximetry
- Author
-
STEVENS, J. D., primary, BRAITHWAITE, P., additional, CORKE, C. F., additional, MADEJ, T. H., additional, and WHEATLEY, R. G., additional
- Published
- 1991
- Full Text
- View/download PDF
53. A Biometrological Procedure Preceeding the Resurfacing
- Author
-
Ryniewicz Anna M., Madej Tomasz, Ryniewicz Andrzej, and Bojko Łukasz
- Subjects
cox-arthrosis ,resurfacing ,modelling ,bio-metrology ,computed tomography ,Technology - Abstract
This paper presents a preoperative hip reconstruction method with diagnosed osteoarthritis using Durom Hip Resurfacing System (DHRS). The method is based on selection and application of the resurfacing to the pelvis reconstructed on the basis of computed tomography. Quality and geometrical parameters of distinguished tissues have a fundamental significance for locating and positioning the acetabular and femoral components. The application precedes the measurements of anatomical structures on a complex numerical model. The developed procedure enables functional selection of endo-prosthesis and its positioning in such a way that it secures geometric parameters within the bone bed and the depth , inclination angles and ante-version of the acetabular component, the neck-shaft angle and ante-torsion angle of the neck of the femoral bone, and reconstruction of the biomechanical axis of the limb and the physiological point of rotation in the implanted joint. Proper biomechanics of the bone-joint complex of the lower limb is determined by correlation of anatomical-geometrical parameters of the acetabular component and parameters of the femoral bone.
- Published
- 2016
- Full Text
- View/download PDF
54. Comparison of epidural fentanyl with sufentanil. Analgesia and side effects after a single bolus dose during elective caesarean section.
- Author
-
Madej, T H and Strunin, L
- Published
- 1987
- Full Text
- View/download PDF
55. Anaesthetic premedication: aims, assessment and methods.
- Author
-
Madej, T H and Paasuke, R T
- Subjects
HEART disease complications ,AGE distribution ,ANESTHESIA ,BENZODIAZEPINES ,COMPARATIVE studies ,RESEARCH methodology ,MEDICAL cooperation ,NARCOTICS ,PARASYMPATHOLYTIC agents ,RESEARCH ,TRANQUILIZING drugs ,EVALUATION research - Published
- 1987
- Full Text
- View/download PDF
56. Assessing introduction of spinal anaesthesia for obstetric procedures.
- Author
-
Madej, T H, Jackson, I J, Wheatley, R G, and Wilson, J
- Abstract
To assess the impact of introducing spinal anaesthesia for obstetric operative procedures on use of general anaesthesia and quality of regional anaesthesia in a unit with an established epidural service a retrospective analysis of routinely collected data on method of anaesthesia, efficacy, and complications was carried out. Data were collected from 1988 to 1991 on 1670 obstetric patients requiring an operative procedure. The introduction of spinal anaesthesia in 1989 significantly reduced the proportion of operative procedures performed under general anaesthesia, from 60% (234/390) in 1988 to 30% (124/414) in 1991. The decrease was most pronounced for manual removal of the placenta (88%, 48/55 v 9%, 3/34) and emergency caesarean section (67%, 129/193) v 38%, 87/229). Epidural anaesthesia decreased in use most significantly for elective caesarean section (65%, 77/118 v 3% 3/113; x2=139, p<0.0001). The incidence of severe pain and need for conversion to general anaesthesia was significantly less with spinal anaesthesia (0%, 0/207 v 3%, 5/156; p<0.05). Hypotension was not a problem, and the incidence of headache after spinal anaesthetic decreased over the period studied. Introducing spinal anaesthesia therefore reduced the need for general anaesthesia and improved the quality of regional anaesthesia.
- Published
- 1993
57. Extradural infusion analgesia for postoperative pain relief.
- Author
-
Leith, S, Wheatley, R G, Jackson, I J, Madej, T H, and Hunter, D
- Abstract
We describe 4-yr experience providing extradural infusion analgesia in a district hospital for treatment of postoperative pain. A total of 770 patients recovering from major surgery were treated on general surgical wards between April 1989 and March 1993. The results of a retrospective audit showed that pain control, assessed with both a visual analogue scale (VAS score (0-10 cm)) and a verbal rating scale (VRS), was good. At rest, more than 80% of patients scored pain as absent or mild (VAS score 0-3) during the first 24 h, with only 4% experiencing severe pain (VAS score 7-10). On movement, 50% of patients had good pain control (VAS score 0-3) while 20% of patients experienced severe pain (VAS score 7-10). Minor complications such as emetic sequelae and pruritus were common; these conditions were mild and rarely required treatment. Hypotension (< 100 mm Hg) occurred in 34% of patients in the first 24 h. Ventilatory frequencies of 8 b.p.m. or less occurred in 2.6% of patients. Four patients (0.52%) developed severe respiratory depression. These patients demonstrated increased sedation but only one had a low ventilatory frequency. Three patients died while receiving extradural infusion analgesia.
- Published
- 1994
- Full Text
- View/download PDF
58. Large dose epidural sufentanil. Management of postoperative pain with few side effects.
- Author
-
Madej, T H, Watson, N C, and Martin, B C
- Published
- 1987
- Full Text
- View/download PDF
59. Selective prophylaxis with gastric antacids. Identifying high risk parturients and auditing selective H2 receptor antagonist administration.
- Author
-
Wheatley, R. G., And, G. Hood, and Madej, T. H.
- Published
- 1989
- Full Text
- View/download PDF
60. MMDB: 3D structure data in Entrez.
- Author
-
Wang, Y, Addess, K J, Geer, L, Madej, T, Marchler-Bauer, A, Zimmerman, D, and Bryant, S H
- Abstract
Three-dimensional structures are now known for roughly half of all protein families. It is thus quite likely, in searching sequence databases, that one will encounter a homolog with known structure and be able to use this information to infer structure-function properties. The goal of Entrez's 3D structure database is to make this information accessible and useful to molecular biologists. To this end, Entrez's search engine provides three powerful features: (i) Links between databases; one may search by term matching in Medline((R)), for example, and link to 3D structures reported in these articles. (ii) Sequence and structure neighbors; one may select all sequences similar to one of interest, for example, and link to any known 3D structures. (iii) Sequence and structure visualization; identifying a homolog with known structure, one may view a combined molecular-graphic and alignment display, to infer approximate 3D structure. Entrez's MMDB (Molecular Modeling DataBase) may be accessed at: http://www.ncbi.nlm.nih.gov/Entrez/structure.html
- Published
- 2000
- Full Text
- View/download PDF
61. Tribological testing of engine oils
- Author
-
Ryniewicz, A. M., Bojko, L., Madej, T., Ryniewicz, A., and Paweł Pałka
62. Glomus lamellosum (Glomales, Zygomycota), an arbuscular mycorrhizal fungal species new for Poland and Europe
- Author
-
Błaszkowski, J., Iwona Agnieszka Adamska, and Madej, T.
63. MMDB: Entrez 3D-structure database
- Author
-
Wang, Y., Anderson, J. B., Chen, J., Lewis Geer, He, S., Hurwitz, D. I., Liebert, C. A., Madej, T., Marchler, G. H., Marchler-Bauer, A., Panchenko, A. R., Shoemaker, B. A., Song, J. S., Thiessen, P. A., Yamashita, R. A., and Bryant, S. H.
64. Comparison of Epidural Fentanyl with Sufentanil
- Author
-
Madej, T. H., primary and Strunin, L., additional
- Published
- 1988
- Full Text
- View/download PDF
65. Comparison of Extradural Buprenorphine and Extradural Morphine after Caesarean Section
- Author
-
Simpson, K. H., primary, Madej, T. H., additional, McDowell, J. M., additional, MacDonald, R., additional, Lyons, G., additional, and McMorland, G. H., additional
- Published
- 1989
- Full Text
- View/download PDF
66. Comparison of Epidural Fentanyl with Sufentanil. Analgesia and Side Effects After a Single Bolus Dose During Elective Caesarean Section
- Author
-
MADEJ, T. H., primary and STRUNIN, L., additional
- Published
- 1988
- Full Text
- View/download PDF
67. Selective prophylaxis with gastric antacids. Identifying high risk parturients and auditing selective H2receptor antagonist administration
- Author
-
Wheatley, R. G., primary, And, G. Hood, additional, and Madej, T. H., additional
- Published
- 1989
- Full Text
- View/download PDF
68. An application of group testing to the file comparison problem
- Author
-
Madej, T., primary
- Full Text
- View/download PDF
69. Selective prophylaxis with gastric antacids. Identifying high risk parturients and auditing selective H2 receptor antagonist administration
- Author
-
Wheatley, R. G., Hood, G., and Madej, T. H.
- Abstract
A clinical study was conducted in the delivery ward to ascertain whether parturients at high risk for operative intervention could be identified and whether selective H2 receptor antagonist administration could be instituted. A high risk group comprising 25 per cent of patients with a tenfold increase of surgical intervention, could be identified. In practice, H receptor antagonists were not always given to these patients despite clear guidelines. The remaining 75 per cent of patients formed a low risk group with only 3 5 per cent requiring surgery. Despite the low rate of surgical intervention this group accounted for the largest number of patients not receiving oral ranitidine before surgery in the first year of the study. In the second year, there was improvement in the system and its application (P<00001). This trial illustrates some of the problems encountered when trying to implement a selective prophylactic regimen.
- Published
- 1989
- Full Text
- View/download PDF
70. Knowledge-based annotation of small molecule binding sites in proteins
- Author
-
Panchenko Anna R, Bryant Stephen H, Shoemaker Benjamin A, Tyagi Manoj, Thangudu Ratna R, and Madej Thomas
- Subjects
Computer applications to medicine. Medical informatics ,R858-859.7 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background The study of protein-small molecule interactions is vital for understanding protein function and for practical applications in drug discovery. To benefit from the rapidly increasing structural data, it is essential to improve the tools that enable large scale binding site prediction with greater emphasis on their biological validity. Results We have developed a new method for the annotation of protein-small molecule binding sites, using inference by homology, which allows us to extend annotation onto protein sequences without experimental data available. To ensure biological relevance of binding sites, our method clusters similar binding sites found in homologous protein structures based on their sequence and structure conservation. Binding sites which appear evolutionarily conserved among non-redundant sets of homologous proteins are given higher priority. After binding sites are clustered, position specific score matrices (PSSMs) are constructed from the corresponding binding site alignments. Together with other measures, the PSSMs are subsequently used to rank binding sites to assess how well they match the query and to better gauge their biological relevance. The method also facilitates a succinct and informative representation of observed and inferred binding sites from homologs with known three-dimensional structures, thereby providing the means to analyze conservation and diversity of binding modes. Furthermore, the chemical properties of small molecules bound to the inferred binding sites can be used as a starting point in small molecule virtual screening. The method was validated by comparison to other binding site prediction methods and to a collection of manually curated binding site annotations. We show that our method achieves a sensitivity of 72% at predicting biologically relevant binding sites and can accurately discriminate those sites that bind biological small molecules from non-biological ones. Conclusions A new algorithm has been developed to predict binding sites with high accuracy in terms of their biological validity. It also provides a common platform for function prediction, knowledge-based docking and for small molecule virtual screening. The method can be applied even for a query sequence without structure. The method is available at http://www.ncbi.nlm.nih.gov/Structure/ibis/ibis.cgi.
- Published
- 2010
- Full Text
- View/download PDF
71. Long-term trends in evolution of indels in protein sequences
- Author
-
Shoemaker Benjamin, Babenko Vladimir, Madej Thomas, Wolf Yuri, and Panchenko Anna R
- Subjects
Evolution ,QH359-425 - Abstract
Abstract Background In this paper we describe an analysis of the size evolution of both protein domains and their indels, as inferred by changing sizes of whole domains or individual unaligned regions or "spacers". We studied relatively early evolutionary events and focused on protein domains which are conserved among various taxonomy groups. Results We found that more than one third of all domains have a statistically significant tendency to increase/decrease in size in evolution as judged from the overall domain size distribution as well as from the size distribution of individual spacers. Moreover, the fraction of domains and individual spacers increasing in size is almost twofold larger than the fraction decreasing in size. Conclusion We showed that the tolerance to insertion and deletion events depends on the domain's taxonomy span. Eukaryotic domains are depleted in insertions compared to the overall test set, namely, the number of spacers increasing in size is about the same as the number of spacers decreasing in size. On the other hand, ancient domain families show some bias towards insertions or spacers which grow in size in evolution. Domains from several Gene Ontology categories also demonstrate certain tendencies for insertion or deletion events as inferred from the analysis of spacer sizes.
- Published
- 2007
- Full Text
- View/download PDF
72. Structural similarity of loops in protein families: toward the understanding of protein evolution
- Author
-
Madej Thomas and Panchenko Anna R
- Subjects
Evolution ,QH359-425 - Abstract
Abstract Background Protein evolution and protein classification are usually inferred by comparing protein cores in their conserved aligned parts. Structurally aligned protein regions are separated by less conserved loop regions, where sequence and structure locally deviate from each other and do not superimpose well. Results Our results indicate that even longer protein loops can not be viewed as "random coils" and for the majority of protein families in our test set there exists a linear correlation between the measures of sequence similarity and loop structural similarity. Results suggest that distance matrices derived from the loop (dis)similarity measure may produce in some cases more reliable cluster trees compared to the distance matrices based on the conventional measures of sequence and structural (dis)similarity. Conclusions We show that by considering "dissimilar" loop regions rather than only conserved core regions it is possible to improve our understanding of protein evolution.
- Published
- 2005
- Full Text
- View/download PDF
73. Domperidone--an acute dystonic reaction.
- Author
-
Madej, T H
- Published
- 1985
- Full Text
- View/download PDF
74. NAUSEA, VOMITING AND FENTANYL
- Author
-
MADEJ, T. H. and SIMPSON, K. H.
- Published
- 1988
- Full Text
- View/download PDF
75. EVALUATION OF "3 IN 1" LUMBAR PLEXUS BLOCK IN PATIENTS HAVING MUSCLE BIOPSY
- Author
-
MADEJ, T. H., ELLIS, F. R., and HALSALL, P. J.
- Abstract
Winnie and co-workers described a technique of blocking the lateral cutaneous nerve of thigh, femoral and obturator nerves using one injection of local anaesthetic into the fibrous sheath surrounding the femoral nerve. We studied 40 patients undergoing biopsy of vastus medialis for investigation of malignant hyperpyrexia, for onset, quality and recovery from this block. The patients were assigned in a random double-blind fashion to receive 0.6 ml kg−1 of one of two anaesthetic solutions: 1% lignocaine with 1 in 100000 noradrenaline or 0.25% bupivacaine. Bupivacaine produced a similar onset time but longer duration of action compared with lignocaine. Median peak plasma concentrations of six patients in each group did not approach values associated with toxicity. This study demonstrated a 12.5% and 87.5% partial and complete femoral nerve block, respectively, and a 67.5% success rate for lateral cutaneous nerve of thigh using Winnie's technique. There was no clinical evidence of obturator nerve block.
- Published
- 1989
- Full Text
- View/download PDF
76. COMPARISON OF THE USE OF DOMPERIDONE, DROPERIDOL AND METOCLOPRAMIDE IN THE PREVENTION OF NAUSEA AND VOMITING FOLLOWING GYNAECOLOGICAL SURGERY IN DAY CASES
- Author
-
MADEJ, T. H. and SIMPSON, K. H.
- Abstract
The efficacy of domperidone 20 mg, droperidol 2.5 mg, metoclopramide 10 mg or placebo (saline) administered i.v. before induction of anaesthesia, was studied in 199 women undergoing gynaecological surgery as day cases. Following a standardized general anaesthetic technique, droperidol or metoclopramide significantly reduced the incidence of nausea and vomiting; domperidone decreased the incidence of postoperative nausea alone. The occurrence of extrapyramidal reactions was similar in all groups. Patients treated with antiemetics were no more sedated than those given placebo. Those receiving droperidol complained of significantly less postoperative pain than those who had received domperidone or metoclopramide.
- Published
- 1986
- Full Text
- View/download PDF
77. COMPARISON OF EXTRADURAL BUPRENORPHINE AND EXTRADURAL MORPHINE AFTER CAESAREAN SECTION
- Author
-
SIMPSON, K. H., MADEJ, T. H., MCDOWELL, J. M., MACDONALD, R., and LYONS, G.
- Abstract
Fifty-seven women received extradural morphine 3 mg, buprenorphine 0.18 mg or buprenorphine 0.09 mg after elective Caesarean section carried out under extradural bupivacaine. Supplementary sublingual buprenorphine was available on demand. Ten-centimetre visual analogue pain scores were completed regularly; emesis, pruritis and urinary retention were recorded for 24 h. Patients who received buprenorphine 0.09 mg had more pain, and required more supplementary analgesia, than those who received morphine 3 mg. Pain scores and analgesic requirements after buprenorphine 0.18 mg were not significantly different from either of the other two groups. Emesis was not significantly different in the three groups. More itching occurred after morphine 3 mg and buprenorphine 0.18 mg than after buprenorphine 0.09 mg; pruritis of the face, legs and perineum was more common after morphine than buprenorphine. Twenty-eight percent of patients without a urinary catheter developed retention of urine. Seventy-five to 84% of patients were satisfied with analgesia during the first day after operation. Analgesia and adverse effects were similar when morphine 3 mg or buprenorphine 0.18 mg was given extradurally after Caesarean section. - Published
- 1988
- Full Text
- View/download PDF
78. THE FIRST YEAR'S EXPERIENCE OF AN ACUTE PAIN SERVICE
- Author
-
WHEATLEY, R. G., MADEJ, T. H., JACKSON, I. J. B., and HUNTER, D.
- Abstract
The benefits, risks and resource implications of providing an Acute Pain Service were assessed during the first year of the service. Six hundred and sixty patients recovering from major surgery were treated with patient-controlled analgesia (510 patients) or extradural infusion analgesia (150 patients). The results of a prospective outcome study showed that pain control was good: more than 60% of patients scored their pain as mild during the first 24h. Only 10% of patients complained of severe postoperative pain. Eight patients developed potentially serious complications including respiratory depression and hypotension; the diagnosis and management of these problems on general wards is discussed. Retrospective analysis of the incidence of postoperative chest infection in surgical patients showed a marked reduction during the first year of the service (1.3% in 1988, 0.4% in 1989–90 (P < 0.01))
- Published
- 1991
- Full Text
- View/download PDF
79. HYPOXAEMIA AND PAIN RELIEF AFTER UPPER ABDOMINAL SURGERY: COMPARISON OF I.M. AND PATIENT-CONTROLLED ANALGESIA
- Author
-
WHEATLEY, R. G., SHEPHERD, D., JACKSON, I. J. B., MADEJ, T. H., and HUNTER, D.
- Abstract
Forty patients recovering from upper abdominal surgery were allocated randomly to receive i.m. morphine 0.15 mg kg−1 as required or patient-controlled analgesia (PCA), with i.v. morphine 1 mg and a 5-min lock out time. Arterial oxygen saturation (Sp02) was measured continuously the night before and for 24 h immediately after surgery. A significantly greater proportion of patients in the PCA group (nine of 19) rated their analgesia as excellent compared with the i.m. group (two of 20) (P < 0.05). There was no significant difference in the incidence of postoperative hypoxaemia in the two treatment groups. Severe postoperative hypoxaemia (Sp02 <85% for more than 6 min h−1 ) was seen in three patients receiving i.m. analgesia and one patient in the PCA group.
- Published
- 1992
- Full Text
- View/download PDF
80. HYPOXAEMIA AND PAIN RELIEF AFTER LOWER ABDOMINAL SURGERY: COMPARISON OF EXTRADURAL AND PATIENT-CONTROLLED ANALGESIA
- Author
-
MADEJ, T. H., WHEATLEY, R. G., JACKSON, I. J. B., and HUNTER, D.
- Abstract
We have examined postoperative pain in patients allocated randomly to receive extradural bolus diamorphine 3.6 mg, extradura I infusion of 0.15% bupivacaine with 0.01% diamorphine or patient-controlled i.v. administration of diamorphine at a maximum rate of 1 mg per 5 min, after total abdominal hysterectomy. Extradural infusion analgesia produced the smallest pain scores from 12 to 24 h after surgery (P < 0.05). More patients in the extradural infusion group were moderately hypoxaemic (SpOl < 90% ≯ 12 min h−1) after operation, compared with the two other groups (P < 0.05). The group using patient-controlled analgesia received more diamorphine and suffered a greater incidence of emetic sequelae (P < 0.05).
- Published
- 1992
- Full Text
- View/download PDF
81. Postoperative extradural analgesia
- Author
-
WHEATLEY, R. G. and MADEJ, T. H.
- Published
- 1995
- Full Text
- View/download PDF
82. Interval number of special posets and random posets
- Author
-
Madej, T. and West, D. B.
- Published
- 1995
- Full Text
- View/download PDF
83. COMPARISON OF THE USE OF DOMPERIDONE, DROPERIDOL AND METOCLOPRAMIDE IN THE PREVENTION OF NAUSEA AND VOMITING FOLLOWING MAJOR GYNAECOLOGICAL SURGERY
- Author
-
MADEJ, T. H. and SIMPSON, K. H.
- Abstract
Domperidone 20 mg, droperidol 2.5 mg, metoclopramide 10 mg and placebo (saline) were given i.v. 10 min before the end of anaesthesia, to 200 women undergoing major gynaecological surgery, and the incidence of postoperative nausea and vomiting following a standard anaesthetic technique was assessed. Droperidol was significantly more effective than domperidone, metoclopramide or placebo in reducing emetic sequelae. There were no significant differences between the groups in the incidence of extrapyramidal effects and postoperative sedation. Patients given droperidol required less postoperative analgesia than those given domperidone or metoclopramide. It was concluded that, of the drugs studied, droperidol alone was effective in protecting against nausea and vomiting after major gynaecological surgery.
- Published
- 1986
- Full Text
- View/download PDF
84. Balanced Analgesia with Intravenous Ketorolac and Patient-Controlled Morphine Following Lower Abdominal Surgery
- Author
-
Blackburn, A., Stevens, J. D., Wheatley, R. G., and Madej, T. H.
- Published
- 1995
- Full Text
- View/download PDF
85. Ultrasound Imaging in Diagnosis and Management of Lower Limb Injuries: A Comprehensive Review.
- Author
-
Maruszczak K, Kochman M, Madej T, and Gawda P
- Subjects
- Humans, Leg Injuries diagnostic imaging, Leg Injuries therapy, Ligaments injuries, Ligaments diagnostic imaging, Ultrasonography methods, Lower Extremity diagnostic imaging, Lower Extremity injuries
- Abstract
Medical imaging tests are widely used to diagnose a broad spectrum of lower-limb injuries. Among these modalities, ultrasound (US) imaging has gained significant traction as a valuable diagnostic instrument for assessing conditions primarily affecting muscles, tendons, ligaments, and other soft tissues. However, there are important dilemmas related to the indications and possibilities of US in lower-limb injuries. Conflicting findings and approaches raise questions regarding the validity, accuracy, and usefulness of the US in that area. This narrative review attempts to summarize the current state of knowledge regarding US imaging of lower-limb injuries. The study provides a detailed discussion of the existing literature and contemporary insights on the diagnosis of lower-limb injuries using US examination, and draws attention to the role of the US in interventional procedures and monitoring of the healing process. The characteristics of normal muscles, tendons, and ligaments in US imaging are presented, along with the most commonly documented conditions affecting these tissues. Furthermore, the benefits and justifications for employing US in interventional procedures are discussed, ranging from platelet-rich plasma injections to physiotherapeutic treatments like percutaneous electrolysis. The study was further augmented with US pictures depicting various lower-limb injuries, mainly affecting young athletes. This article aims to review the role of US imaging in the diagnosis and management of common lower-limb injuries.
- Published
- 2024
- Full Text
- View/download PDF
86. BASILICA Left, CHIMNEY Right: Protecting Coronary Arteries According to Anatomical Requirements in Valve-in-Valve TAVR.
- Author
-
Mangner N, Madej T, Tomko M, Fassl J, Kappert U, Haussig S, and Linke A
- Subjects
- Humans, Coronary Vessels diagnostic imaging, Coronary Vessels surgery, Treatment Outcome, Aortic Valve diagnostic imaging, Aortic Valve surgery, Prosthesis Design, Transcatheter Aortic Valve Replacement adverse effects, Aortic Valve Stenosis diagnostic imaging, Aortic Valve Stenosis surgery, Heart Valve Prosthesis, Bioprosthesis
- Abstract
Competing Interests: Funding Support and Author Disclosures Dr Mangner has received personal fees from Edwards Lifesciences, Medtronic, Novartis, Sanofi Genzyme, AstraZeneca, Pfizer, Bayer, Abbott, Abiomed, B. Braun, and Boston Scientific outside the submitted work. Dr Fassl has received speaker fees from CSL Behring and Edwards Lifesciences outside the submitted work. Dr Haussig has received speaker honoraria and consulting fees from Edwards Lifesciences, Abbott, and Boston Scientific outside the submitted work. Dr Linke has received grants from Novartis; personal fees from Medtronic, Abbott, Edwards Lifesciences, Boston Scientific, AstraZeneca, Novartis, Pfizer, Abiomed, Bayer, and Boehringer; and personal fees from Picardia, Transverse Medical, and Claret Medical outside the submitted work. All other authors have reported that they have no relationships relevant to the contents of this paper to disclose.
- Published
- 2024
- Full Text
- View/download PDF
87. Registered incidence of acute upper respiratory tract infections diagnosed by primary care physicians in Poland - 5-year retrospective analysis of the national health insurance database.
- Author
-
Paciepnik I, Bąk A, Leoszkiewicz K, Windak A, Madej T, Marek O, Studziński K, and Tomasik T
- Subjects
- Male, Child, Humans, Female, Incidence, Retrospective Studies, Poland epidemiology, Anti-Bacterial Agents therapeutic use, Physicians, Primary Care, Respiratory Tract Infections diagnosis, Respiratory Tract Infections epidemiology
- Abstract
Introduction and Objective: Upper respiratory tract infection (URTIs), caused by a variety of viruses and sometimes by bacteria, represents the most common acute illness in primary health care. The aim of the study was to explore the registered incidence of URTIs in Poland in the period between 2015-2019, and its burden on the health care system., Material and Methods: A retrospective analysis was carried out of all medical encounters in Poland registered within the national billing database of public healthcare services. Medical services provided due to acute URTIs were classified according to the ICD-10 codes. Registered Incidence Rate (RIR) was calculated yearly, in a 100,000 population. A generalised additive model was used to calculate the Incidence Rate Ratio (IRR)., Results: In the analysed 5-year period, acute URTI was diagnosed in 24.3 million patients (61.7% of the whole population registered in PHC). The RIR of all acute URTIs in PHC was 50,762/100,000/year. Nearly 99% of consultations in this group of patients were provided by PHC physicians. Only 0.8% were referred to an OSC consultation and 0.4% were hospitalised. In PHC, indeterminate URTIs were most frequently diagnosed. The estimated IRR for children aged 1-4 years was 1.65 (95% CI: 1.64; 1.66, p<0.01) and for men 0.79 (95% CI: 0.79; 0.79; p<0.01). In the studied period, the number of patients consulted for acute URTI decreased slightly in PHC, but significantly in specialist services., Conclusions: The registered incidence of URTIs in Poland burdens mainly PHC physicians. Women and children aged 1-4 years are more frequent users of medical services related to URTIs. It appears that strategies for increasing patient empowerment to provide efficient self-care reducing the utilisation of PHC services are needed.
- Published
- 2024
- Full Text
- View/download PDF
88. Towards a structural and functional analysis of the immunoglobulin-fold proteome.
- Author
-
Tawfeeq C, Song J, Khaniya U, Madej T, Wang J, Youkharibache P, and Abrol R
- Subjects
- Antibodies, Protein Folding, Proteome
- Abstract
The immunoglobulin fold (Ig fold) domain is a super-secondary structural motif consisting of a sandwich with two layers of β-sheets that is present in many proteins with very diverse biological functions covering a wide range of physiological processes. This domain presents a modular architecture built with β strands connected by variable length loops that has a highly conserved structural core of four β-strands and quite variable β-sheet extensions in the two sandwich layers that enable both divergent and convergent evolutionary mechanisms in the known Ig fold proteome. The central role of this Ig fold's structural plasticity in the evolutionary success of antibodies in our immune system is well established. Nature has also utilized this Ig fold in all domains of life in many different physiological contexts that go way beyond the immune system. Here we will present a structural and functional overview of the utilization of the Ig fold in different biological processes and in different cellular contexts to highlight some of the innumerable ways that this structural motif can interact in multidomain proteins to enable their diversity of functions. This includes shareable specific protein structure visualizations behind those functions that serve as starting points for further explorations of the biomolecular interactions spanning the Ig fold proteome. This overview also highlights how this Ig fold is being utilized through natural adaptation, engineering, and even building from scratch for a range of biotechnological applications., (Copyright © 2024. Published by Elsevier Inc.)
- Published
- 2024
- Full Text
- View/download PDF
89. Baroreflex activation therapy in patients with heart failure with reduced ejection fraction: a single-centre experience.
- Author
-
Blanco C, Madej T, Mangner N, Hommel J, Grimm S, Knaut M, Linke A, and Winzer EB
- Subjects
- Aged, Female, Humans, Male, Baroreflex physiology, Retrospective Studies, Stroke Volume physiology, Ventricular Function, Left, Middle Aged, Electric Stimulation Therapy adverse effects, Heart Failure
- Abstract
Aims: Heart failure with reduced ejection fraction (HFrEF) is associated with excessive sympathetic and impaired parasympathetic activity. The Barostim Neo™ device is used for electronical baroreflex activation therapy (BAT) to counteract autonomic nervous system dysbalance. Randomized trials have shown that BAT improves walking distance and reduces N-terminal prohormone of brain natriuretic peptide (NT-proBNP) levels at least in patients with only moderate elevation at baseline. Its impact on the risk of heart failure hospitalization (HFH) and death is not yet established, and experience in clinical routine is limited., Methods and Results: We report on patient characteristics and clinical outcome in a retrospective, non-randomized single-centre registry of BAT in HFrEF. Patients in the New York Heart Association (NYHA) Classes III and IV with a left ventricular ejection fraction (LVEF) <35% despite guideline-directed medical therapy were eligible. Symptom burden, echocardiography, and laboratory testing were assessed at baseline and after 12 months. Clinical events of HFH and death were recorded at routine clinical follow-up. Data are shown as number (%) or median (inter-quartile range). Between 2014 and 2020, 30 patients were treated with BAT. Median age was 67 (63-77) years, and 27 patients (90%) were male. Most patients (83%) had previous HFH. Device implantation was successful in all patients. At 12 months, six patients had died and three were alive but did not attend follow-up. NYHA class was III/IV in 26 (87%)/4 (13%) patients at baseline, improved in 19 patients, and remained unchanged in 5 patients (P < 0.001). LVEF improved from 25.5 (20.0-30.5) % at baseline to 30.0 (25.0-36.0) % at 12 months (P = 0.014). Left ventricular end-diastolic diameter remained unchanged. A numerical decrease in NT-proBNP [3165 (880-8085) vs. 1001 (599-3820) pg/mL] was not significant (P = 0.526). Median follow-up for clinical events was 16 (10-33) months. Mortality at 1 (n = 6, 20%) and 3 years (n = 10, 33%) was as expected by the Meta-Analysis Global Group in Chronic Heart Failure risk score. Despite BAT, event rate was high in patients with NYHA Class IV, NT-proBNP levels >1600 pg/mL, or estimated glomerular filtration rate (eGFR) <30 mL/min at baseline. NYHA class and eGFR were independent predictors of mortality., Conclusions: Patients with HFrEF who are selected for BAT are in a stage of worsening or even advanced heart failure. BAT appears to be safe and improves clinical symptoms and-to a modest degree-left ventricular function. The risk of death remains high in advanced disease stages. Patient selection seems to be crucial, and the impact of BAT in earlier disease stages needs to be established., (© 2023 The Authors. ESC Heart Failure published by John Wiley & Sons Ltd on behalf of European Society of Cardiology.)
- Published
- 2023
- Full Text
- View/download PDF
90. Procedural outcome & risk prediction in young patients undergoing transvenous lead extraction-a GALLERY subgroup analysis.
- Author
-
Rexha E, Chung DU, Burger H, Ghaffari N, Madej T, Ziaukas V, Hassan K, Reichenspurner H, Gessler N, Willems S, Butter C, Pecha S, and Hakmi S
- Abstract
Background: The prevalence of young patients with cardiac implantable electronic devices (CIED) is steadily increasing, accompanied by a rise in the occurrence of complications related to CIEDs. Consequently, transvenous lead extraction (TLE) has become a crucial treatment approach for such individuals., Objective: The purpose of this study was to examine the characteristics and procedural outcomes of young patients who undergo TLE, with a specific focus on identifying independent risk factors associated with adverse events., Methods: All patients in the GALLERY (GermAn Laser Lead Extraction RegistrY) were categorized into two groups based on their age at the time of enrollment: 45 years or younger, and over 45 years. A subgroup analysis was conducted specifically for the younger population. In this analysis, predictor variables for all-cause mortality, procedural complications, and procedural failure were evaluated using multivariable analyses., Results: We identified 160 patients aged 45 years or younger with a mean age of 35.3 ± 7.6 years and 42.5% ( n = 68) female patients. Leading extraction indication was lead dysfunction in 51.3% of cases, followed by local infections in 20.6% and systemic infections in 16.9%. The most common device to be extracted were implantable cardioverter-defibrillators (ICD) with 52.5%. Mean number of leads per patient was 2.2 ± 1.0. Median age of the oldest indwelling lead was 91.5 [54.75-137.5] months. Overall complication rate was 3.8% with 1.9% minor and 1.9% major complications. Complete procedural success was achieved in 90.6% of cases. Clinical procedural success rate was 98.1%. Procedure-related mortality was 0.0%. The all-cause in-hospital mortality rate was 2.5%, with septic shock identified as the primary cause of mortality. Multivariable analysis revealed CKD (OR: 19.0; 95% CI: 1.84-194.9; p = 0.018) and systemic infection (OR: 12.7; 95% CI: 1.14-142.8; p = 0.039) as independent predictor for all-cause mortality. Lead age ≥ 10 years (OR: 14.58, 95% CI: 1.36-156.2; p = 0.027) was identified as sole independent risk factor for procedural complication., Conclusion: TLE in young patients is safe and effective with a procedure-related mortality rate of 0.0%. CKD and systemic infection are predictors for all-cause mortality, whereas lead age ≥ 10 years was identified as independent risk factor for procedural complications in young patients undergoing TLE., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (© 2023 Rexha, Chung, Burger, Ghaffari, Madej, Ziaukas, Hassan, Reichenspurner, Gessler, Willems, Butter, Pecha and Hakmi.)
- Published
- 2023
- Full Text
- View/download PDF
91. The GermAn Laser Lead Extraction RegistrY: GALLERY.
- Author
-
Pecha S, Burger H, Chung DU, Möller V, Madej T, Maali A, Osswald B, De Simone R, Monsefi N, Ziaukas V, Erler S, Elfarra H, Perthel M, Wehbe MS, Ghaffari N, Sandhaus T, Busk H, Schmitto JD, Bärsch V, Easo J, Albert M, Treede H, Nägele H, Zenker D, Hegazy Y, Ahmadi D, Gessler N, Ehrlich W, Romano G, Knaut M, Reichenspurner H, Willems S, Butter C, and Hakmi S
- Subjects
- Aged, Child, Device Removal methods, Female, Humans, Lasers, Excimer, Postoperative Complications etiology, Registries, Retrospective Studies, Treatment Outcome, Defibrillators, Implantable adverse effects, Pacemaker, Artificial adverse effects, Renal Insufficiency, Chronic
- Abstract
Aims: The GermAn Laser Lead Extraction RegistrY: GALLERY is a retrospective, national multicentre registry, investigating the safety and efficacy of laser lead extraction procedures in Germany., Methods and Results: Twenty-four German centres that are performing laser lead extraction have participated in the registry. All patients, treated with a laser lead extraction procedure between January 2013 and March 2017, were consecutively enrolled. Safety and efficacy of laser lead extraction were investigated. A total number of 2524 consecutive patients with 6117 leads were included into the registry. 5499 leads with a median lead dwell time of 96 (62-141) months were treated. The mean number of treated leads per patient was 2.18 ± 1.02. The clinical procedural success rate was 97.86% and the complete lead removal was observed in 94.85%. Additional extraction tools were used in 6.65% of cases. The rate of procedural failure was 2.14% with lead age ≥10 years being its only predictor. The overall complication rate was 4.32%, including 2.06% major and 2.26% minor complications. Procedure-related mortality was 0.55%. Female sex and the presence of abandoned leads were predictors for procedure-related complications. The all-cause in-hospital mortality was 3.56% with systemic infection being the strongest predictor, followed by age ≥75 years and chronic kidney disease., Conclusion: In the GALLERY, a high success- and low procedure-related complication rates have been demonstrated. In multivariate analysis, female sex and the presence of abandoned leads were predictors for procedure-related complications, while the presence of systemic infection, age ≥75 years, and chronic kidney disease were independent predictors for all-cause mortality., Competing Interests: Conflict of interest: S.P. reports grants and personal fees from Philips/Spectranetics, Medtronic, and AtriCure. H.B. reports grants and personal fees from Philips/Spectranetics, Cook Medical, Zoll Medical, Braun Medical, Abbott, Sorin Group/LivaNova, Impulse Dynamics, Biotronik, and Medtronic. B.O. reports grants and personal fees from Philips/Spectranetics and Medtronic. H.E. reports personal fees from Philips/Spectranetics. N.G. reports grants and personal fees from Boston Scientific, Medtronic, and Bayer Vital. M.K. reports grants and personal fees from Philips/Spectranetics, Zoll Medical, Sorin Group/LivaNova, Medtronic, Boston Scientific, and CVRx. H.R. reports personal fees from Medtronic. S.W. reports grants and personal fees from Abbott, Boston Scientific, Medtronic, Boehringer Ingelheim, Bristol Myers Squibb, Bayer Vital, Acutus, and Daiichi Sankyo. S.H. reports grants and personal fees from Boston Scientific, Edwards Lifesciences, Medtronic, Meril, Philips/Spectranetics, and Zoll Medical. All other authors have no conflicts of interest., (© The Author(s) 2022. Published by Oxford University Press on behalf of the European Society of Cardiology. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2022
- Full Text
- View/download PDF
92. Wearable cardioverter defibrillator multicentre experience in a large cardiac surgery cohort at transient risk of sudden cardiac death.
- Author
-
Kuehn C, Ruemke S, Rellecke P, Lichtenberg A, Joskowiak D, Hagl C, Hassan M, Leyh RG, Erler S, Garbade J, Eifert S, Grieshaber P, Boening A, Doenst T, Velichkov I, Madej T, Knaut M, Hain A, and Burger H
- Subjects
- Aged, Death, Sudden, Cardiac epidemiology, Death, Sudden, Cardiac prevention & control, Female, Humans, Male, Retrospective Studies, Stroke Volume, Ventricular Function, Left, Cardiac Surgical Procedures adverse effects, Defibrillators, Implantable adverse effects, Wearable Electronic Devices
- Abstract
Objectives: The wearable cardioverter defibrillator (WCD) is an established, safe, effective solution, protecting patients at risk of sudden cardiac death. We specifically investigated WCD use in cardiac surgery patients since data for this patient group are rare., Methods: Retrospective data analysis in 10 German cardiac surgery centres was performed. Cardiac surgery patients with left ventricular ejection fraction (LVEF) ≤35% or after implantable cardioverter defibrillator (ICD) explantation who received WCD between 2010 and 2020 were assessed using LifeVest Network data., Results: A total of 1168 patients with a median age of 66 years [interquartile range (IQR) 57-73] were enrolled; 87% were male. Clinical indications included coronary artery bypass grafting (43%), valve surgery (16%), combined coronary artery bypass graft/valve surgery (15%), ICD explantation (24%) and miscellaneous (2%). The median wear time of WCD was 23.4 h/day (IQR 21.7-23.8). A total of 106 patients (9.1%) exhibited ventricular tachycardia. A total of 93.2% of episodes occurred within the first 3 months. Eighteen patients (1.5%) received 26 adequate shocks. The inadequate shock rate was low (8 patients, 0.7%). LVEF improved from a median of 28% (IQR 22-32%) before WCD prescription to 35% (IQR 28-42%) during follow-up. Excluding ICD explant patients, 37% of patients received an ICD., Conclusions: The risk of sudden cardiac death is substantial within the first 3 months after cardiac surgery. Patients were protected effectively by WCD. Due to significant LVEF improvement, the majority did not require ICD implantation after WCD use. Compliance was high despite sternotomy. This multicentre experience confirms existing data regarding effectiveness, safety and compliance. Therefore, WCD should be considered in cardiac surgery patients with severely reduced LVEF., (© The Author(s) 2022. Published by Oxford University Press on behalf of the European Association for Cardio-Thoracic Surgery.)
- Published
- 2022
- Full Text
- View/download PDF
93. iCn3D: From Web-Based 3D Viewer to Structural Analysis Tool in Batch Mode.
- Author
-
Wang J, Youkharibache P, Marchler-Bauer A, Lanczycki C, Zhang D, Lu S, Madej T, Marchler GH, Cheng T, Chong LC, Zhao S, Yang K, Lin J, Cheng Z, Dunn R, Malkaram SA, Tai CH, Enoma D, Busby B, Johnson NL, Tabaro F, Song G, and Ge Y
- Abstract
iCn3D was initially developed as a web-based 3D molecular viewer. It then evolved from visualization into a full-featured interactive structural analysis software. It became a collaborative research instrument through the sharing of permanent, shortened URLs that encapsulate not only annotated visual molecular scenes, but also all underlying data and analysis scripts in a FAIR manner. More recently, with the growth of structural databases, the need to analyze large structural datasets systematically led us to use Python scripts and convert the code to be used in Node. js scripts. We showed a few examples of Python scripts at https://github.com/ncbi/icn3d/tree/master/icn3dpython to export secondary structures or PNG images from iCn3D. Users just need to replace the URL in the Python scripts to export other annotations from iCn3D. Furthermore, any interactive iCn3D feature can be converted into a Node. js script to be run in batch mode, enabling an interactive analysis performed on one or a handful of protein complexes to be scaled up to analysis features of large ensembles of structures. Currently available Node. js analysis scripts examples are available at https://github.com/ncbi/icn3d/tree/master/icn3dnode. This development will enable ensemble analyses on growing structural databases such as AlphaFold or RoseTTAFold on one hand and Electron Microscopy on the other. In this paper, we also review new features such as DelPhi electrostatic potential, 3D view of mutations, alignment of multiple chains, assembly of multiple structures by realignment, dynamic symmetry calculation, 2D cartoons at different levels, interactive contact maps, and use of iCn3D in Jupyter Notebook as described at https://pypi.org/project/icn3dpy., Competing Interests: BB was employed by the DNAnexus The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Wang, Youkharibache, Marchler-Bauer, Lanczycki, Zhang, Lu, Madej, Marchler, Cheng, Chong, Zhao, Yang, Lin, Cheng, Dunn, Malkaram, Tai, Enoma, Busby, Johnson, Tabaro, Song and Ge.)
- Published
- 2022
- Full Text
- View/download PDF
94. Database resources of the national center for biotechnology information.
- Author
-
Sayers EW, Bolton EE, Brister JR, Canese K, Chan J, Comeau DC, Connor R, Funk K, Kelly C, Kim S, Madej T, Marchler-Bauer A, Lanczycki C, Lathrop S, Lu Z, Thibaud-Nissen F, Murphy T, Phan L, Skripchenko Y, Tse T, Wang J, Williams R, Trawick BW, Pruitt KD, and Sherry ST
- Subjects
- Databases, Chemical, Databases, Nucleic Acid, Databases, Protein, Humans, Internet, National Library of Medicine (U.S.), PubMed, United States, Biotechnology trends, Databases, Genetic trends
- Abstract
The National Center for Biotechnology Information (NCBI) produces a variety of online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals. NCBI provides search and retrieval operations for most of these data from 35 distinct databases. The E-utilities serve as the programming interface for the most of these databases. Resources receiving significant updates in the past year include PubMed, PMC, Bookshelf, RefSeq, SRA, Virus, dbSNP, dbVar, ClinicalTrials.gov, MMDB, iCn3D and PubChem. These resources can be accessed through the NCBI home page at https://www.ncbi.nlm.nih.gov., (Published by Oxford University Press on behalf of Nucleic Acids Research 2021.)
- Published
- 2022
- Full Text
- View/download PDF
95. Using iCn3D and the World Wide Web for structure-based collaborative research: Analyzing molecular interactions at the root of COVID-19.
- Author
-
Youkharibache P, Cachau R, Madej T, and Wang J
- Abstract
The COVID-19 pandemic took us ill-prepared and tackling the many challenges it poses in a timely manner requires world-wide collaboration. Our ability to study the SARS-COV-2 virus and its interactions with its human host in molecular terms efficiently and collaboratively becomes indispensable and mission-critical in the race to develop vaccines, drugs, and neutralizing antibodies. There is already a significant corpus of 3D structures related to SARS and MERS coronaviruses, and the rapid generation of new structures demands the use of efficient tools to expedite the sharing of structural analyses and molecular designs and convey them in their native 3D context in sync with sequence data and annotations. We developed iCn3D (pronounced "I see in 3D")
1 to take full advantage of web technologies and allow scientists of different backgrounds to perform and share sequence-structure analyses over the Internet and engage in collaborations through a simple mechanism of exchanging "lifelong" web links (URLs). This approach solves the very old problem of "sharing of molecular scenes" in a reliable and convenient manner. iCn3D links are sharable over the Internet and make data and entire analyses findable, accessible, and reproducible, with various levels of interoperability. Links and underlying data are FAIR2 and can be embedded in preprints and papers, bringing a 3D live and interactive dimension to a world of text and static images used in current publications, eliminating at the same time the need for arcane supplemental materials. This paper exemplifies iCn3D capabilities in visualization, analysis, and sharing of COVID-19 related structures, sequence variability, and molecular interactions.- Published
- 2020
- Full Text
- View/download PDF
96. Biological Assembly Comparison with VAST.
- Author
-
Madej T, Marchler-Bauer A, Lanczycki C, Zhang D, and Bryant SH
- Subjects
- Algorithms, Databases, Protein, Monte Carlo Method, Protein Conformation, Search Engine methods, Software, Proteins chemistry, Sequence Alignment methods
- Abstract
The VAST+ algorithm is an efficient, simple, and elegant solution to the problem of comparing the atomic structures of biological assemblies. Given two protein assemblies, it takes as input all the pairwise structural alignments of the component proteins. It then clusters the rotation matrices from the pairwise superpositions, with the clusters corresponding to subsets of the two assemblies that may be aligned and well superposed. It uses the Vector Alignment Search Tool (VAST) protein-protein comparison method for the input structural alignments, but other methods could be used, as well. From a chosen cluster, an "original" alignment for the assembly may be defined by simply combining the relevant input alignments. However, it is often useful to reduce/trim the original alignment, using a Monte Carlo refinement algorithm, which allows biologically relevant conformational differences to be more readily detected and observed. The method is easily extended to include RNA or DNA molecules. VAST+ results may be accessed via the URL https://www.ncbi.nlm.nih.gov/Structure , then entering a PDB accession or terms in the search box, and using the link [VAST+] in the upper right corner of the Structure Summary page.
- Published
- 2020
- Full Text
- View/download PDF
97. iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures.
- Author
-
Wang J, Youkharibache P, Zhang D, Lanczycki CJ, Geer RC, Madej T, Phan L, Ward M, Lu S, Marchler GH, Wang Y, Bryant SH, Geer LY, and Marchler-Bauer A
- Subjects
- Databases, Genetic, Molecular Conformation, Base Sequence, Computational Biology methods, Internet, Models, Molecular, Proteins chemistry, Software
- Abstract
Motivation: Build a web-based 3D molecular structure viewer focusing on interactive structural analysis., Results: iCn3D (I-see-in-3D) can simultaneously show 3D structure, 2D molecular contacts and 1D protein and nucleotide sequences through an integrated sequence/annotation browser. Pre-defined and arbitrary molecular features can be selected in any of the 1D/2D/3D windows as sets of residues and these selections are synchronized dynamically in all displays. Biological annotations such as protein domains, single nucleotide variations, etc. can be shown as tracks in the 1D sequence/annotation browser. These customized displays can be shared with colleagues or publishers via a simple URL. iCn3D can display structure-structure alignments obtained from NCBI's VAST+ service. It can also display the alignment of a sequence with a structure as identified by BLAST, and thus relate 3D structure to a large fraction of all known proteins. iCn3D can also display electron density maps or electron microscopy (EM) density maps, and export files for 3D printing. The following example URL exemplifies some of the 1D/2D/3D representations: https://www.ncbi.nlm.nih.gov/Structure/icn3d/full.html?mmdbid=1TUP&showanno=1&show2d=1&showsets=1., Availability and Implementation: iCn3D is freely available to the public. Its source code is available at https://github.com/ncbi/icn3d., Supplementary Information: Supplementary data are available at Bioinformatics online., (Published by Oxford University Press 2019. This work is written by US Government employees and is in the public domain in the US.)
- Published
- 2020
- Full Text
- View/download PDF
98. Ultrasound image of malignant bone tumors in children. An analysis of nine patients diagnosed in 2011-2016.
- Author
-
Madej T, Flak-Nurzyńska J, Dutkiewicz E, Ciechomska A, Kowalczyk J, and Wieczorek AP
- Abstract
Introduction: The diagnostic process of bone tumors, including malignant ones, is based on conventional radiological methods, such as radiography and computed tomography, and with precise assessment of local advancement in magnetic resonance imaging. Ultrasonography is not included in the diagnostic algorithms as a tool suitable to detect this type of pathology. More and more frequent usage of musculoskeletal ultrasound in children as the first imaging method or, in some cases, as the only diagnostic method, makes it necessary to be familiar with sonographic presentation of bone tumors to suggest this diagnosis early enough and, after its verification, start treatment without a significant delay. Aim: The aim of this study was to determine changes in the sonographic image that might indicate a bone malignancy and suggest the need to extend the diagnostic process in this direction., Material and Method: This article discusses 10 bone tumors in 9 children who had an ultrasound scan performed at the beginning of the diagnostic process before the histopathological diagnosis was established and treatment initiated. The assessment involved ultrasonographic features indicating the presence of a tumor. Results: In the group of 9 patients, 8 malignant bone tumors were diagnosed in ultrasonography and later verified histopathologically: 4 osteosarcomas and 4 Ewing's sarcomas. In one case, two bone tumors were detected in ultrasonography without specification of their nature (malignant/benign, primary/secondary)., Material and Method: In the analyzed cases, ultrasonography enabled the correct diagnosis of a focal bone lesion, and in most cases (8/9) it presented an image that suggested its malignant nature and the necessity of further diagnosis and treatment., (© Polish Ultrasound Society.)
- Published
- 2018
- Full Text
- View/download PDF
99. Ultrasound screening for neoplasms in children up to 6 years old.
- Author
-
Jedrzejewski G, Wozniak MM, Pawelec A, Matera A, Kunach M, Madej T, Wieczorek AP, and Nowakowska K
- Subjects
- Child, Female, Humans, Male, Observational Studies as Topic, Mass Screening methods, Neoplasms diagnosis, Ultrasonography methods
- Abstract
The aim of the ultrasound (US) screening program was to detect neoplastic lesions in children, together with other pathologies of the developmental age in the area of the neck, abdomen, female pelvis, and scrotum in boys.US screening scans, including cervical, abdominal, pelvical, and scrotal US, were performed in the population of asymptomatic children aged from 9 months to 6 years. The children were scanned in Mobile Pediatric US Unit, consisting of 2 independent consulting rooms.The scans of 14,324 children were analyzed, 7247 boys and 7077 girls. Totally 42,538 US examinations were performed, including 14,187 cervical scans, 14,259 abdominal scans, 6942 female pelvical scans, and 7150 scrotal scans. Totally 5426 abnormalities were detected, which represent 12.7% of all examinations and 30% of patients. Three tumors were recognized, which are renal malignant tumor diagnosed as Wilms tumor, neurogenic tumor of the rib, and teratoma of the testis.US screening in pediatric population can be used to reveal lesions inaccessible to clinical examination, like tumors or other pathologies of developmental age before the onset of clinical symptoms. Due to the large number of detected abnormalities it should be recommended to the whole population of certain age., Competing Interests: The authors have no conflicts of interest to disclose.
- Published
- 2016
- Full Text
- View/download PDF
100. The venous U-turn: a unique variant of total anomalous superior systemic venous return.
- Author
-
Madej T, Ghazy T, Ouda A, and Knaut M
- Subjects
- Aged, Azygos Vein abnormalities, Azygos Vein diagnostic imaging, Azygos Vein physiopathology, Brachiocephalic Veins diagnostic imaging, Brachiocephalic Veins physiopathology, Computed Tomography Angiography, Humans, Male, Regional Blood Flow, Renal Veins abnormalities, Renal Veins diagnostic imaging, Renal Veins physiopathology, Vena Cava, Inferior diagnostic imaging, Vena Cava, Inferior physiology, Vena Cava, Superior diagnostic imaging, Vena Cava, Superior physiopathology, Brachiocephalic Veins abnormalities, Vena Cava, Superior abnormalities
- Published
- 2016
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.