71 results on '"Longdon, Ben"'
Search Results
52. Genome-Wide Association Studies Reveal a Simple Genetic Basis of Resistance to Naturally Coevolving Viruses in Drosophila melanogaster
- Author
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Magwire, Michael M., primary, Fabian, Daniel K., additional, Schweyen, Hannah, additional, Cao, Chuan, additional, Longdon, Ben, additional, Bayer, Florian, additional, and Jiggins, Francis M., additional
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- 2012
- Full Text
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53. Host Phylogeny Determines Viral Persistence and Replication in Novel Hosts
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Longdon, Ben, primary, Hadfield, Jarrod D., additional, Webster, Claire L., additional, Obbard, Darren J., additional, and Jiggins, Francis M., additional
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- 2011
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54. Rhabdoviruses in Two Species of Drosophila: Vertical Transmission and a Recent Sweep
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Longdon, Ben, primary, Wilfert, Lena, additional, Obbard, Darren J, additional, and Jiggins, Francis M, additional
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- 2011
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55. Host-switching by a vertically transmitted rhabdovirus in Drosophila
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Longdon, Ben, primary, Wilfert, Lena, additional, Osei-Poku, Jewelna, additional, Cagney, Heather, additional, Obbard, Darren J., additional, and Jiggins, Francis M., additional
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- 2011
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56. Paternally transmitted parasites
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Longdon, Ben, primary and Jiggins, Francis M., additional
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- 2010
- Full Text
- View/download PDF
57. Sigma viruses from three species of Drosophila form a major new clade in the rhabdovirus phylogeny
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Longdon, Ben, primary, Obbard, Darren J., additional, and Jiggins, Francis M., additional
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- 2009
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58. Individual and collective choice: parallel prospecting and mining in ants
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Aleksiev, Antony S., primary, Longdon, Ben, additional, Christmas, Matthew J., additional, Sendova-Franks, Ana B., additional, and Franks, Nigel R., additional
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- 2007
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59. Previous Exposure to an RNA Virus Does Not Protect against Subsequent Infection in Drosophila melanogaster.
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Longdon, Ben, Cao, Chuan, Martinez, Julien, and Jiggins, Francis M.
- Subjects
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RNA virus infections , *DROSOPHILA melanogaster , *PRIMING (Psychology) , *INVERTEBRATES , *RNA interference , *IMMUNE response - Abstract
Background: Immune priming has been shown to occur in a wide array of invertebrate taxa, with individuals exposed to a pathogen showing increased protection upon subsequent exposure. However, the mechanisms underlying immune priming are poorly understood. The antiviral RNAi response in Drosophila melanogaster is an ideal candidate for providing a specific and acquired response to subsequent infection. We exposed D. melanogaster to two challenges of a virus known to produce an antiviral RNAi response, to examine whether any protective effects of prior exposure on survival were observed. Results: In this experiment we found no evidence that prior exposure to Drosophila C Virus (DCV) protects flies from a subsequent lethal challenge, with almost identical levels of mortality in flies previously exposed to DCV or a control. Conclusions: Our results confirm the finding that ‘acquired’ immune responses are not ubiquitous across all invertebrate-pathogen interactions. We discuss why we may have observed no effect in this study, with focus on the mechanistic basis of the RNAi pathway. [ABSTRACT FROM AUTHOR]
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- 2013
- Full Text
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60. Previous Exposure to an RNA Virus Does Not Protect against Subsequent Infection in Drosophila melanogaster.
- Author
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Longdon, Ben, Cao, Chuan, Martinez, Julien, and Jiggins, Francis M.
- Subjects
RNA virus infections ,DROSOPHILA melanogaster ,PRIMING (Psychology) ,INVERTEBRATES ,RNA interference ,IMMUNE response - Abstract
Background: Immune priming has been shown to occur in a wide array of invertebrate taxa, with individuals exposed to a pathogen showing increased protection upon subsequent exposure. However, the mechanisms underlying immune priming are poorly understood. The antiviral RNAi response in Drosophila melanogaster is an ideal candidate for providing a specific and acquired response to subsequent infection. We exposed D. melanogaster to two challenges of a virus known to produce an antiviral RNAi response, to examine whether any protective effects of prior exposure on survival were observed. Results: In this experiment we found no evidence that prior exposure to Drosophila C Virus (DCV) protects flies from a subsequent lethal challenge, with almost identical levels of mortality in flies previously exposed to DCV or a control. Conclusions: Our results confirm the finding that ‘acquired’ immune responses are not ubiquitous across all invertebrate-pathogen interactions. We discuss why we may have observed no effect in this study, with focus on the mechanistic basis of the RNAi pathway. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
61. Supplementary tables S1-6 from Vertically transmitted rhabdoviruses are found across three insect families and have dynamic interactions with their hosts
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Longdon, Ben, Day, Jonathan P., Schulz, Nora, Leftwich, Philip T., Jong, Maaike A. De, Breuker, Casper J., Gibbs, Melanie, Obbard, Darren J., Wilfert, Lena, Smith, Sophia C.L., McGonigle, John E., Houslay, Thomas M., Wright, Lucy I., Livraghi, Luca, Evans, Luke C., Friend, Lucy A., Chapman, Tracey, Vontas, John, Natasa Kambouraki, and Jiggins, Francis M.
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viruses ,fungi ,3. Good health - Abstract
A small number of free-living viruses have been found to be obligately vertically transmitted, but it remains uncertain how widespread vertically transmitted viruses are and how quickly they can spread through host populations. Recent metagenomic studies have found several insects to be infected with sigma viruses (Rhabdoviridae). Here, we report that sigma viruses that infect Mediterranean fruit flies (Ceratitis capitata), Drosophila immigrans, and speckled wood butterflies (Pararge aegeria) are all vertically transmitted. We find patterns of vertical transmission that are consistent with those seen in Drosophila sigma viruses, with high rates of maternal transmission, and lower rates of paternal transmission. This mode of transmission allows them to spread rapidly in populations, and using viral sequence data we found the viruses in D. immigrans and C. capitata had both recently swept through host populations. The viruses were common in nature, with mean prevalences of 12% in C. capitata, 38% in D. immigrans and 74% in P. aegeria. We conclude that vertically transmitted rhabdoviruses may be widespread in a broad range of insect taxa, and that these viruses can have dynamic interactions with their hosts.
62. Supplementary tables S1-6 from Vertically transmitted rhabdoviruses are found across three insect families and have dynamic interactions with their hosts
- Author
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Longdon, Ben, Day, Jonathan P., Schulz, Nora, Leftwich, Philip T., Jong, Maaike A. De, Breuker, Casper J., Gibbs, Melanie, Obbard, Darren J., Wilfert, Lena, Smith, Sophia C.L., McGonigle, John E., Houslay, Thomas M., Wright, Lucy I., Livraghi, Luca, Evans, Luke C., Friend, Lucy A., Chapman, Tracey, Vontas, John, Natasa Kambouraki, and Jiggins, Francis M.
- Subjects
viruses ,fungi ,3. Good health - Abstract
A small number of free-living viruses have been found to be obligately vertically transmitted, but it remains uncertain how widespread vertically transmitted viruses are and how quickly they can spread through host populations. Recent metagenomic studies have found several insects to be infected with sigma viruses (Rhabdoviridae). Here, we report that sigma viruses that infect Mediterranean fruit flies (Ceratitis capitata), Drosophila immigrans, and speckled wood butterflies (Pararge aegeria) are all vertically transmitted. We find patterns of vertical transmission that are consistent with those seen in Drosophila sigma viruses, with high rates of maternal transmission, and lower rates of paternal transmission. This mode of transmission allows them to spread rapidly in populations, and using viral sequence data we found the viruses in D. immigrans and C. capitata had both recently swept through host populations. The viruses were common in nature, with mean prevalences of 12% in C. capitata, 38% in D. immigrans and 74% in P. aegeria. We conclude that vertically transmitted rhabdoviruses may be widespread in a broad range of insect taxa, and that these viruses can have dynamic interactions with their hosts.
63. Supplementary figures and tables from Virus evolution in Wolbachia-infected Drosophila
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Martinez, Julien, Bruner-Montero, Gaspar, Arunkumar, Ramesh, Smith, Sophia C. L., Day, Jonathan P., Longdon, Ben, and Jiggins, Francis M.
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3. Good health - Abstract
Figures S1-S3 and Tables S1-S3
64. Supplementary figures and tables from Virus evolution in Wolbachia-infected Drosophila
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Martinez, Julien, Bruner-Montero, Gaspar, Arunkumar, Ramesh, Smith, Sophia C. L., Day, Jonathan P., Longdon, Ben, and Jiggins, Francis M.
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3. Good health - Abstract
Figures S1-S3 and Tables S1-S3
65. The transmission of enteric viruses through the aquatic environment in the UK
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Treagus, S., Longdon, Ben, Lowther, James, Gaze, William, Baker-Austin, Craig, and Bayer-Wilfert, Lena
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Hepatitis E virus ,Norovirus ,Environmental pollution ,Water pollution ,Food contamination ,Foodborne transmission ,Zoonotic transmission ,Shellfish ,Cetaceans ,Wastewater ,Next generation sequencing ,Risk assessment - Abstract
Hepatitis E virus (HEV) and norovirus are known enteric pathogens which can cause a wide range of symptoms. Norovirus is estimated to cause 3 million cases in the UK annually, and whilst HEV cases are reported at much lower levels, it is considered to be an emerging pathogen within more economically developed countries and may be an underestimated health risk. However, the routes of transmission for HEV have not yet been fully elucidated. This PhD endeavours to identify whether the aquatic environment plays a significant role in the transmission of HEV, using norovirus for comparison of prevalence and risk. The studies within this PhD identified HEV and norovirus within sewage and shellfish samples and identified HEV within cetacean liver samples. Sequencing of these samples confirmed norovirus presence within sewage and confirmed HEV presence in sewage and shellfish samples. Additionally, a HEV sequence within a shellfish sample may be classified as a new subtype of genotype 3 and the norovirus genotypes identified within sewage suggest that wastewater monitoring of norovirus may be beneficial for identifying circulating norovirus genotypes. A risk assessment of norovirus and HEV presence in sewage and shellfish samples showed that the risk of norovirus illness from recreational water activities and shellfish consumption may be high, but that risk of HEV illness was very low in comparison. Overall, HEV is present within the aquatic environment in the UK, however the prevalence and levels of HEV in sewage and shellfish suggest that its presence provides little risk to public health. On the other hand, contamination of norovirus within the aquatic environment is a systemic problem in the UK, which is not without public health risk, and must be addressed through limiting release of raw sewage into the environment, standardisation of wastewater treatment practices to make them more effective for removal of viruses.
- Published
- 2022
66. Virus host shifts in Drosophila : the influences of virus genotype and coinfection on susceptibility within and across host species
- Author
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Imrie, Ryan M. and Longdon, Ben
- Subjects
Viruses ,Drosophila ,Coinfection ,Comparative Methods - Abstract
Virus host shifts are a major source of outbreaks and emerging infectious diseases, and continue to cause considerable damage to public health, society, and the global economy. Predicting and preventing future virus host shifts has become a primary goal of infectious disease research, and multiple tools and approaches are being developed to work towards this goal. In this thesis, I examine three key aspects of infection that have implications for our wider understanding of virus host shifts and their predictability in natural systems: whether the outcome of infections across species is correlated between related viruses, whether the presence of a coinfecting virus can alter the outcomes of cross-species transmission, and the influence of host genetics and immunity on the outcomes of coinfection. These experiments make use of a large and evolutionarily diverse panel of Drosphilidae host species, and infections with two insect Cripaviruses: Drosophila C virus (DCV) and Cricket Paralysis virus (CrPV), with the outcomes of infection quantified throughout as viral loads via qRT-PCR. In Chapter Two, phylogenetic generalised linear mixed models are applied to data on the outcome of single infections with three isolates of DCV (DCV-C, DCV-EB, DCV-M) and one isolate of CrPV, to look for correlations in viral load across host species. Strong positive corrections were found between DCV isolates and weaker positive correlations between DCV and CrPV, with evidence of host species by virus interactions on the outcome of infection. Of the four viruses tested, the most closely related isolates tended to be the most strongly correlated, with correlation strength deteriorating with the evolutionary distance between isolates, although we lacked the diversity or sample size of viruses to properly determine any effect of evolutionary distance on correlation strength. Together, this suggests that hosts susceptible to one virus are also susceptible to closely related viruses, and that knowledge of one virus may be extrapolated to closely related viruses, at least within the range of evolutionary divergence tested here. In the remainder of this thesis, I examine the outcome of coinfection with DCV-C and CrPV across host species (Chapter Three) and across genotypes and immune mutants of Drosophila melanogaster (Chapter Four). These chapters aim to assess the potential for coinfection to alter the outcomes of cross-species transmission - and so interfere with predictions of virus host shifts - and the potential influence of host genetics and immunity on the outcome of coinfection. Chapter Three finds little evidence of systematic changes in the outcome of single and coinfection for both viruses across species, suggesting that coinfection may not be a required consideration in predictive models of every host-virus system. Effects of coinfection were found in a subset of species but were not recapitulated in a follow-up experiment looking at tissue tropism during coinfection on a subset of host species. Together, this suggests that any effects of coinfection across species with DCV and CrPV are due to stochastic effects within individual hosts. Chapter Four finds small but credible effects of coinfection across genotypes of D. melanogaster, but these effects showed little host genetic basis or effect on the genetic basis of susceptibility to each virus separately. Mutations in several immune genes caused virus-specific changes in viral load between single and coinfection, suggesting that coinfection interactions between viruses can be moderated by the host immune response. This thesis has aimed to explore several fundamental features of cross-species transmission that are relevant to our understanding - and ability to predict - virus host shifts. Both the finding that correlations exist between viruses and the approach used to characterise coinfection across and within host species would now benefit from an increased diversity of experimental pathogens, to better investigate the influence of virus evolutionary relationships on the outcomes of virus host shifts and present a broader understanding of the potential impact of coinfection on the outcomes of cross-species transmission.
- Published
- 2022
67. Host shifts result in parallel genetic changes when viruses evolve in closely related species
- Author
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Ben Longdon, Joel M. Alves, Lucia Tagliaferri, John McGonigle, Thomas M. Houslay, Jonathan P. Day, Francis M. Jiggins, Sophia Cl Smith, Longdon, Ben [0000-0001-6936-1697], Alves, Joel M [0000-0001-6138-9134], McGonigle, John E [0000-0001-8390-2867], Jiggins, Francis M [0000-0001-7470-8157], and Apollo - University of Cambridge Repository
- Subjects
0301 basic medicine ,0106 biological sciences ,Evolutionary Genetics ,Virus Replication ,Pathology and Laboratory Medicine ,01 natural sciences ,Medicine and Health Sciences ,Drosophilidae ,lcsh:QH301-705.5 ,Pathogen ,Phylogeny ,0303 health sciences ,biology ,Drosophila Melanogaster ,Microbial Mutation ,Microbial Genetics ,Eukaryota ,Animal Models ,Genomics ,Biological Evolution ,Insects ,Experimental Organism Systems ,Medical Microbiology ,Viral Pathogens ,Host-Pathogen Interactions ,Viruses ,Drosophila ,Parallel evolution ,Pathogens ,Research Article ,lcsh:Immunologic diseases. Allergy ,Evolutionary Processes ,Arthropoda ,Immunology ,Genome, Viral ,Parallel Evolution ,Research and Analysis Methods ,010603 evolutionary biology ,Microbiology ,Virus ,Host Specificity ,03 medical and health sciences ,Model Organisms ,Virology ,Genetics ,Animals ,RNA Viruses ,Molecular Biology ,Microbial Pathogens ,030304 developmental biology ,Evolutionary Biology ,Human evolutionary genetics ,Host (biology) ,Organisms ,Biology and Life Sciences ,Computational Biology ,RNA virus ,biology.organism_classification ,Genome Analysis ,Genomic Libraries ,Invertebrates ,Viral Replication ,030104 developmental biology ,lcsh:Biology (General) ,Viral replication ,Evolutionary biology ,Parasitology ,Adaptation ,lcsh:RC581-607 ,Drosophila C virus ,Virus Physiological Phenomena - Abstract
Host shifts, where a pathogen invades and establishes in a new host species, are a major source of emerging infectious diseases. They frequently occur between related host species and often rely on the pathogen evolving adaptations that increase their fitness in the novel host species. To investigate genetic changes in novel hosts, we experimentally evolved replicate lineages of an RNA virus (Drosophila C Virus) in 19 different species of Drosophilidae and deep sequenced the viral genomes. We found a strong pattern of parallel evolution, where viral lineages from the same host were genetically more similar to each other than to lineages from other host species. When we compared viruses that had evolved in different host species, we found that parallel genetic changes were more likely to occur if the two host species were closely related. This suggests that when a virus adapts to one host it might also become better adapted to closely related host species. This may explain in part why host shifts tend to occur between related species, and may mean that when a new pathogen appears in a given species, closely related species may become vulnerable to the new disease., Author summary Host shifts, where a pathogen jumps from one host species to another, are a major source of infectious disease. Hosts shifts are more likely to occur between related host species and often rely on the pathogen evolving adaptations that increase their fitness in the novel host. Here we have investigated how viruses evolve in different host species, by experimentally evolving replicate lineages of an RNA virus in 19 different host species that shared a common ancestor 40 million years ago. We then deep sequenced the genomes of these viruses to examine the genetic changes that have occurred in different host species that vary in their relatedness. We found that parallel mutations–that are indicative of selection–were significantly more likely to occur within viral lineages from the same host, and between viruses evolved in closely related species. This suggests that a mutation that may adapt a virus to a given host, may also adapt it to closely related host species.
- Published
- 2018
68. ICTV Virus Taxonomy Profile: Rhabdoviridae.
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Walker PJ, Blasdell KR, Calisher CH, Dietzgen RG, Kondo H, Kurath G, Longdon B, Stone DM, Tesh RB, Tordo N, Vasilakis N, Whitfield AE, and Ictv Report Consortium
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- Animals, Genome, Viral, Humans, Phylogeny, Plant Diseases virology, Plants virology, Rhabdoviridae genetics, Rhabdoviridae isolation & purification, Rhabdoviridae classification, Rhabdoviridae Infections veterinary, Rhabdoviridae Infections virology
- Abstract
The family Rhabdoviridae comprises viruses with negative-sense (-) single-stranded RNA genomes of 10.8-16.1 kb. Virions are typically enveloped with bullet-shaped or bacilliform morphology but can also be non-enveloped filaments. Rhabdoviruses infect plants and animals including mammals, birds, reptiles and fish, as well as arthropods which serve as single hosts or act as biological vectors for transmission to animals or plants. Rhabdoviruses include important pathogens of humans, livestock, fish and agricultural crops. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of Rhabdoviridae, which is available at www.ictv.global/report/rhabdoviridae.
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- 2018
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69. The evolution of transmission mode.
- Author
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Antonovics J, Wilson AJ, Forbes MR, Hauffe HC, Kallio ER, Leggett HC, Longdon B, Okamura B, Sait SM, and Webster JP
- Subjects
- Animals, Host-Pathogen Interactions, Animal Diseases transmission, Biological Evolution, Host-Parasite Interactions
- Abstract
This article reviews research on the evolutionary mechanisms leading to different transmission modes. Such modes are often under genetic control of the host or the pathogen, and often in conflict with each other via trade-offs. Transmission modes may vary among pathogen strains and among host populations. Evolutionary changes in transmission mode have been inferred through experimental and phylogenetic studies, including changes in transmission associated with host shifts and with evolution of the unusually complex life cycles of many parasites. Understanding the forces that determine the evolution of particular transmission modes presents a fascinating medley of problems for which there is a lack of good data and often a lack of conceptual understanding or appropriate methodologies. Our best information comes from studies that have been focused on the vertical versus horizontal transmission dichotomy. With other kinds of transitions, theoretical approaches combining epidemiology and population genetics are providing guidelines for determining when and how rapidly new transmission modes may evolve, but these are still in need of empirical investigation and application to particular cases. Obtaining such knowledge is a matter of urgency in relation to extant disease threats.This article is part of the themed issue 'Opening the black box: re-examining the ecology and evolution of parasite transmission'., (© 2017 The Authors.)
- Published
- 2017
- Full Text
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70. The evolution, diversity, and host associations of rhabdoviruses.
- Author
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Longdon B, Murray GG, Palmer WJ, Day JP, Parker DJ, Welch JJ, Obbard DJ, and Jiggins FM
- Abstract
Metagenomic studies are leading to the discovery of a hidden diversity of RNA viruses. These new viruses are poorly characterized and new approaches are needed predict the host species these viruses pose a risk to. The rhabdoviruses are a diverse family of RNA viruses that includes important pathogens of humans, animals, and plants. We have discovered thirty-two new rhabdoviruses through a combination of our own RNA sequencing of insects and searching public sequence databases. Combining these with previously known sequences we reconstructed the phylogeny of 195 rhabdovirus sequences, and produced the most in depth analysis of the family to date. In most cases we know nothing about the biology of the viruses beyond the host they were identified from, but our dataset provides a powerful phylogenetic approach to predict which are vector-borne viruses and which are specific to vertebrates or arthropods. By reconstructing ancestral and present host states we found that switches between major groups of hosts have occurred rarely during rhabdovirus evolution. This allowed us to propose seventy-six new likely vector-borne vertebrate viruses among viruses identified from vertebrates or biting insects. Based on currently available data, our analysis suggests it is likely there was a single origin of the known plant viruses and arthropod-borne vertebrate viruses, while vertebrate- and arthropod-specific viruses arose at least twice. There are also few transitions between aquatic and terrestrial ecosystems. Viruses also cluster together at a finer scale, with closely related viruses tending to be found in closely related hosts. Our data therefore suggest that throughout their evolution, rhabdoviruses have occasionally jumped between distantly related host species before spreading through related hosts in the same environment. This approach offers a way to predict the most probable biology and key traits of newly discovered viruses.
- Published
- 2015
- Full Text
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71. Quick guide. Paternally transmitted parasites.
- Author
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Longdon B and Jiggins FM
- Subjects
- Animals, Male, Host-Parasite Interactions, Host-Pathogen Interactions
- Published
- 2010
- Full Text
- View/download PDF
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