2,407 results on '"Lin Deng"'
Search Results
52. Adequate vitamin D level associated with reduced risk of sporadic colorectal cancer
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Yanhui Ma, Lin Deng, Yuchan Huangfu, Yunlan Zhou, Ping Wang, and Lisong Shen
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vitamin D ,25(OH)D ,sporadic colorectal cancer ,risk factor ,nutrition ,Nutrition. Foods and food supply ,TX341-641 - Abstract
PurposeThe effect of vitamin D level pertinent to colorectal cancer incidence, progression, or mortality risk is complicated, and study findings are mixed. Therefore, we evaluated whether serum vitamin D [25-hydroxyvitamin D, 25(OH)D] is associated with the incidence of sporadic colorectal cancer (CRC).MethodsThis study is a retrospective analysis of the relationship between serum 25(OH)D level and the risk of CRC. Age, sex, body mass index, history of polyp, disease conditions (i.e., diabetes), medications, and other eight vitamins were used as confounding factors. A total of 389 participants were enrolled in this study, including comprising 83 CRC patients without a family history and 306 healthy controls, between January 2020 and March 2021 at the Department of Colorectal Surgery and Endoscope Center at the Xinhua Hospital, Shanghai Jiao Tong University School of Medicine. Adjusted smoothing spline plots, subgroup analysis, and multivariate logistic regression analysis were conducted to estimate the relative risk between serum 25(OH)D and sporadic CRC risk.ResultsAfter fully adjusting the confounding factors, it was found that circulating 25(OH)D played a protective role in patients with CRC (OR = 0.76 [0.63, 0.92], p = 0.004) and that an adequate vitamin D level was significantly associated with a reduced CRC risk compared to vitamin D deficiency or sufficiency (OR = 0.31 [0.11, 0.9], p = 0.03). According to this study, statins did not affect the potential protective effects of vitamin D (OR = 1.02 [0.97, 1.08], p = 0.44) and may account for the inverse association between serum 25(OH)D and colorectal cancer.ConclusionAn adequate level of serum 25(OH)D was associated with a reduced CRC risk, especially for the elderly. The finding on the absence of protective effect of vitamin D in the statin use subgroup, suggests it may be one of the substantial contributing confounders, and warrants further investigation.
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- 2023
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53. The effect of educational computer games on the academic resilience, academic self-regulation, and academic achievement of EFL students
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Lin Deng, Nikoo Daverpanah, and Siros Izadpanah
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computer games ,academic resilience ,academic self-regulation ,academic achievement ,learning ,Psychology ,BF1-990 - Abstract
IntroductionIn recent years there has been an increasing interest in the field of educational computer games (ECGs). Although ECGs have been researched, more analyses still need to be performed on these variables to check their effects on language learning.MethodsTo this end, 74-third grade female state high school students from two schools in Zanjan were selected through a two-stage cluster random sampling method. The number of students in each class was 37. One of the classes (control group) was trained traditionally and the other was for one semester through the researchers-made ECGs. After completing the training, the research tools were performed as a post-test on the experimental and control groups. The data collection stage took place for about 6 months.ResultsBased on the results from the research questions, the use of training computers has been effective in increasing AR, ASR, and AA.DiscussionIt has significant implications for teachers and learners in the EFL context and opens interesting opportunities for administrators and curriculum developers to explore when planning EFL courses.
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- 2023
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54. Targeting hypoxia-related metabolism molecules: How to improve tumour immune and clinical treatment?
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Bing Liang, Lin Deng, and Xiuhua Zhou
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Hypoxia ,Clinical treatment ,Immune ,Metabolism ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Tumour metabolism has gradually come to be regarded as a key target to prevent tumour growth and metastasis. The unique metabolic characteristics of tumours enable them to maintain self-proliferation in abnormal environments. In recent years, the necessity of hypoxia in the tumour microenvironment has been gradually recognized, and hypoxia-induced tumour metabolites are also regarded as key therapeutic targets. How these hypoxia-related metabolites support tumour development, how to regulate the malignant process of tumours, and how to prevent tumour immune escape have become urgent problems that need to be solved. In this review, we summarize the characteristic tumour regulation of hypoxia-related metabolites and the mechanisms that promote immune escape of tumours. Finally, we summarize the relevant targeted inhibitors in an attempt to provide some novel therapeutic insights.
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- 2022
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55. Toripalimab plus chemotherapy as second-line treatment in previously EGFR-TKI treated patients with EGFR-mutant-advanced NSCLC: a multicenter phase-II trial
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Tao Jiang, Pingyang Wang, Jie Zhang, Yanqiu Zhao, Jianying Zhou, Yun Fan, Yongqian Shu, Xiaoqing Liu, Helong Zhang, Jianxing He, Guanghui Gao, Xiaoqian Mu, Zhang Bao, Yanjun Xu, Renhua Guo, Hong Wang, Lin Deng, Ningqiang Ma, Yalei Zhang, Hui Feng, Sheng Yao, Jiarui Wu, Luonan Chen, Caicun Zhou, and Shengxiang Ren
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Medicine ,Biology (General) ,QH301-705.5 - Abstract
Abstract This multicenter phase-II trial aimed to investigate the efficacy, safety, and predictive biomarkers of toripalimab plus chemotherapy as second-line treatment in patients with EGFR-mutant-advanced NSCLC. Patients who failed from first-line EGFR-TKIs and did not harbor T790M mutation were enrolled. Toripalimab plus carboplatin and pemetrexed were administrated every three weeks for up to six cycles, followed by the maintenance of toripalimab and pemetrexed. The primary endpoint was objective-response rate (ORR). Integrated biomarker analysis of PD-L1 expression, tumor mutational burden (TMB), CD8 + tumor-infiltrating lymphocyte (TIL) density, whole-exome, and transcriptome sequencing on tumor biopsies were also conducted. Forty patients were enrolled with an overall ORR of 50.0% and disease-control rate (DCR) of 87.5%. The median progression free survival (PFS) and overall survival were 7.0 and 23.5 months, respectively. The most common treatment-related adverse effects were leukopenia, neutropenia, anemia, ALT/AST elevation, and nausea. Biomarker analysis showed that none of PD-L1 expression, TMB level, and CD8 + TIL density could serve as a predictive biomarker. Integrated analysis of whole-exome and transcriptome sequencing data revealed that patients with DSPP mutation had a decreased M2 macrophage infiltration and associated with longer PFS than those of wild type. Toripalimab plus chemotherapy showed a promising anti-tumor activity with acceptable safety profiles as the second-line setting in patients with EGFR-mutant NSCLC. DSPP mutation might serve as a potential biomarker for this combination. A phase-III trial to compare toripalimab versus placebo in combination with chemotherapy in this setting is ongoing (NCT03924050).
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- 2021
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56. Late Quaternary Fault Activity of the Southern Segment of the Daliangshan Fault along the Southeastern Margin of the Tibetan Plateau and Its Implications for Fault Rupture Behaviour at Stepovers
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Hu Wang, Dongming Li, Kaijin Li, Lin Deng, and Peisheng Luo
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Geology ,QE1-996.5 - Abstract
AbstractStepovers have been widely suggested to be important structural boundaries that control earthquake rupture extent and therefore the size of earthquakes. Previous studies suggested that ~4-5 km wide stepovers are likely to arrest fault rupture. However, recent earthquake cases show that even much wider stepovers (e.g., ≥7-8 km wide) sometimes may not effectively impede seismic rupture propagation, which requires us to further explore cascading rupture mechanism of large earthquakes at wider stepovers. Here, we constrained slip rates and paleoseismic earthquakes of two fault sections that bound a constraining stepover with width of approximately 7-8 km along the southern segment of the Daliangshan fault along the southeastern margin of the Tibetan Plateau. Multiple landform offset and radiocarbon dating results constrained that the two fault sections show a moderate slip rate at approximately 5 mm/yr. Moreover, three or four paleoseismic events Z through W, in 1489 AD, 620-515 BC, 4475-3700 BC, and 6265-4510 BC, were revealed on the Jiaojihe fault section. Based on the aforementioned results, we suggest that the most recent seismic event might exhibit a jump over the restraining stepover, whereas ruptures of the older events might be arrested by the stepover. Furthermore, we suggest that moderate slip-rate faults might have similar potential with that of high slip-rate faults to rupture through wider stepovers, which increases us in understanding the generation of cascading ruptures on strike-slip faults and is helpful for evaluating seismic hazards.
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- 2022
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57. Potential Functions of the tRNA-Derived Fragment tRF-Gly-GCC Associated With Oxidative Stress in Radiation-Induced Lung Injury
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Lin Deng, Housheng Wang, Ting Fan, Liuyin Chen, Zhiling Shi, JingLin Mi, WeiMei Huang, Rensheng Wang, and Kai Hu
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Therapeutics. Pharmacology ,RM1-950 - Abstract
Objective Transfer RNA-derived small RNAs (tsRNAs) are a novel type of non-coding RNA with various regulatory functions. They are associated with oxidative stress in various diseases, but their potential functions in radiation-induced lung injury (RILI) remain uncertain. Methods To explore the role of tsRNAs in RILI, we used X-rays to irradiate human bronchial epithelial cells and examined the expression profile of altered tsRNAs by RNA sequencing and bioinformatics analysis. Sequencing results were verified by qRT-PCR. tsRNA functions were explored using several methods, including CCK-8, reactive oxygen species (ROS) assays, cell transfection, and western blotting. Results Eighty-six differentially expressed tRNA-derived fragments (tRFs) were identified: 64 were upregulated, and 22 were downregulated. Among them, the regulation of tRF-Gly-GCC, associated with oxidative stress, may be mediated by the inhibition of cell proliferation, promotion of ROS production, and apoptosis in the occurrence and development of RILI. A Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis suggested that the underlying molecular mechanism may involve the PI3K/AKT and the FOXO1 signaling pathways. Conclusion Our findings provide new insights into the molecular mechanisms underpinning RILI, advancing the clinical prevention and treatment of this disease.
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- 2022
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58. Predicting antifreeze proteins with weighted generalized dipeptide composition and multi-regression feature selection ensemble
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Shunfang Wang, Lin Deng, Xinnan Xia, Zicheng Cao, and Yu Fei
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Antifreeze proteins prediction ,Weighted general dipeptide composition ,Lasso regression ,Ridge regression ,Ensemble feature selection ,Two-stage multiple regressions ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Antifreeze proteins (AFPs) are a group of proteins that inhibit body fluids from growing to ice crystals and thus improve biological antifreeze ability. It is vital to the survival of living organisms in extremely cold environments. However, little research is performed on sequences feature extraction and selection for antifreeze proteins classification in the structure and function prediction, which is of great significance. Results In this paper, to predict the antifreeze proteins, a feature representation of weighted generalized dipeptide composition (W-GDipC) and an ensemble feature selection based on two-stage and multi-regression method (LRMR-Ri) are proposed. Specifically, four feature selection algorithms: Lasso regression, Ridge regression, Maximal information coefficient and Relief are used to select the feature sets, respectively, which is the first stage of LRMR-Ri method. If there exists a common feature subset among the above four sets, it is the optimal subset; otherwise we use Ridge regression to select the optimal subset from the public set pooled by the four sets, which is the second stage of LRMR-Ri. The LRMR-Ri method combined with W-GDipC was performed both on the antifreeze proteins dataset (binary classification), and on the membrane protein dataset (multiple classification). Experimental results show that this method has good performance in support vector machine (SVM), decision tree (DT) and stochastic gradient descent (SGD). The values of ACC, RE and MCC of LRMR-Ri and W-GDipC with antifreeze proteins dataset and SVM classifier have reached as high as 95.56%, 97.06% and 0.9105, respectively, much higher than those of each single method: Lasso, Ridge, Mic and Relief, nearly 13% higher than single Lasso for ACC. Conclusion The experimental results show that the proposed LRMR-Ri and W-GDipC method can significantly improve the accuracy of antifreeze proteins prediction compared with other similar single feature methods. In addition, our method has also achieved good results in the classification and prediction of membrane proteins, which verifies its widely reliability to a certain extent.
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- 2021
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59. Synchronous Disintegration of Ferroptosis Defense Axis via Engineered Exosome‐Conjugated Magnetic Nanoparticles for Glioblastoma Therapy
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Boyan Li, Xin Chen, Wei Qiu, Rongrong Zhao, Jiazhi Duan, Shouji Zhang, Ziwen Pan, Shulin Zhao, Qindong Guo, Yanhua Qi, Wenhan Wang, Lin Deng, Shilei Ni, Yuanhua Sang, Hao Xue, Hong Liu, and Gang Li
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blood–brain barrier ,exosomes ,ferroptosis ,glioblastoma ,magnetic nanoparticles ,Science - Abstract
Abstract Glioblastoma (GBM) is one of the most fatal central nervous system tumors and lacks effective or sufficient therapies. Ferroptosis is a newly discovered method of programmed cell death and opens a new direction for GBM treatment. However, poor blood–brain barrier (BBB) penetration, reduced tumor targeting ability, and potential compensatory mechanisms hinder the effectiveness of ferroptosis agents during GBM treatment. Here, a novel composite therapeutic platform combining the magnetic targeting features and drug delivery properties of magnetic nanoparticles with the BBB penetration abilities and siRNA encapsulation properties of engineered exosomes for GBM therapy is presented. This platform can be enriched in the brain under local magnetic localization and angiopep‐2 peptide‐modified engineered exosomes can trigger transcytosis, allowing the particles to cross the BBB and target GBM cells by recognizing the LRP‐1 receptor. Synergistic ferroptosis therapy of GBM is achieved by the combined triple actions of the disintegration of dihydroorotate dehydrogenase and the glutathione peroxidase 4 ferroptosis defense axis with Fe3O4 nanoparticle‐mediated Fe2+ release. Thus, the present findings show that this system can serve as a promising platform for the treatment of glioblastoma.
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- 2022
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60. A robot vision navigation method using deep learning in edge computing environment
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Jing Li, Jialin Yin, and Lin Deng
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Edge computing ,Agricultural robot ,Cascaded deep convolutional network ,Hybrid dilated convolutional network ,Improved Hough transform ,Farmland image segmentation ,Telecommunication ,TK5101-6720 ,Electronics ,TK7800-8360 - Abstract
Abstract In the development of modern agriculture, the intelligent use of mechanical equipment is one of the main signs for agricultural modernization. Navigation technology is the key technology for agricultural machinery to control autonomously in the operating environment, and it is a hotspot in the field of intelligent research on agricultural machinery. Facing the accuracy requirements of autonomous navigation for intelligent agricultural robots, this paper proposes a visual navigation algorithm for agricultural robots based on deep learning image understanding. The method first uses a cascaded deep convolutional network and hybrid dilated convolution fusion method to process images collected by a vision system. Then, it extracts the route of processed images based on the improved Hough transform algorithm. At the same time, the posture of agricultural robots is adjusted to realize autonomous navigation. Finally, our proposed method is verified by using non-interference experimental scenes and noisy experimental scenes. Experimental results show that the method can perform autonomous navigation in complex and noisy environments and has good practicability and applicability.
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- 2021
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61. Degradation of Polystyrene Nanoplastics in UV/NaClO and UV/PMS Systems: Insights into Degradation Efficiency, Mechanism, and Toxicity Evaluation
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Yishu Cai, Fan Chen, Lingfang Yang, Lin Deng, and Zhou Shi
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nanoplastics ,polystyrene degradation ,mechanisms ,DFT calculation ,toxicity assessment ,Hydraulic engineering ,TC1-978 ,Water supply for domestic and industrial purposes ,TD201-500 - Abstract
Nanoplastics have gradually become a concern due to the wide use of plastics. Nanoplastics in aqueous phase can be exposed to users through water supply networks and cannot be efficiently removed by conventional water treatment processes. This work studied the degradation of polystyrene nanoplastics (PS-NP) by two commonly used advanced oxidation systems: UV/NaClO and UV/peroxymonosulfate (PMS). Results showed that almost no turbidity was detected in the PS-NP solution (5.00 mg/L) after treated by both UV/NaClO and UV/PMS for 360 min, suggesting the excellent turbidity removal ability. Yet, scanning electron microscope (SEM) and total organic carbon (TOC) removal tests demonstrated that PS-NP could not be completely degraded by UV/NaClO. The mineralization rate using UV/NaClO was only 7.00% even when the NaClO concentration increased to 5.00 mM, and many PS-NP particles could still be observed in SEM images. By contrast, the mineralization rate reached 63.90% in the UV/PMS system under the identical experimental conditions, and no spherical particles appeared in the SEM results. Density functional theory (DFT) calculations revealed that the different reaction sites and energy barriers of SO4•− and •Cl on PS-NP resulted in the differences in mineralization rates and degradation intermediates. The degradation pathway of PS-NP by UV/NaClO and UV/PMS was proposed accordingly. Additionally, the intermediates toxicity evaluation by a luminescent bacteria test showed that the inhibition rate in the UV/NaClO system (2.97%) was not markedly different from that in the control group without any treatment (1.98%); while that in UV/PMS system increased sharply to 98.19%. This work demonstrated that UV/PMS was more effective in PS-NP degradation than UV/NaClO, and the chemical risks of degradation intermediates were non-negligible.
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- 2023
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62. Label-Free Anomaly Detection Using Distributed Optical Fiber Acoustic Sensing
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Yuyuan Xie, Maoning Wang, Yuzhong Zhong, Lin Deng, and Jianwei Zhang
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deep learning ,distributed optical fiber acoustic sensing ,unsupervised learning ,Chemical technology ,TP1-1185 - Abstract
Deep learning anomaly detection is important in distributed optical fiber acoustic sensing (DAS). However, anomaly detection is more challenging than traditional learning tasks, due to the scarcity of true-positive data and the vast imbalance and irregularity within datasets. Furthermore, it is impossible to catalog all types of anomalies, therefore, the direct application of supervised learning is deficient. To overcome these problems, an unsupervised deep learning method that only learns the normal data features from ordinary events is proposed. First, a convolutional autoencoder is used to extract DAS signal features. A clustering algorithm then locates the feature center of the normal data, and the distance to the new signal is used to determine whether it is an anomaly. The efficacy of the proposed method was evaluated in a real high-speed rail intrusion scenario, and considered all behaviors that may threaten the normal operation of high-speed trains as abnormal. The results show that the threat detection rate of this method reaches 91.5%, which is 5.9% higher than that of the state-of-the-art supervised network and, at 7.2%, the false alarm rate is 0.8% lower than the supervised network. Moreover, using a shallow autoencoder reduces the parameters to 1.34 K, which is significantly lower than the 79.55 K of the state-of-the-art supervised network.
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- 2023
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63. Ribosome Biogenesis Regulator 1 Homolog (RRS1) Promotes Cisplatin Resistance by Regulating AEG-1 Abundance in Breast Cancer Cells
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Junying Song, Cuixiu Peng, Runze Wang, Yanan Hua, Qinglan Wu, Lin Deng, Yi Cao, Li Zhang, and Lin Hou
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RRS1 ,cisplatin resistance ,AEG-1 ,interaction ,breast cancer ,Organic chemistry ,QD241-441 - Abstract
Many ribosomal proteins are highly expressed in tumors and are closely related to their diagnosis, prognosis and pathological characteristics. However, few studies are available on the correlation between ribosomal proteins and chemoresistance. RRS1 (human regulator of ribosome synthesis 1), a critical nuclear protein involved in ribosome biogenesis, also plays a key role in the genesis and development of breast cancer by protecting cancer cells from apoptosis. Given that apoptosis resistance is one of the causes of the cisplatin resistance of tumor cells, our aim was to determine the relationship between RRS1 and cisplatin resistance in breast cancer cells. Here, we report that RRS1 is associated with cisplatin resistance in breast cancer cells. RRS1 silencing increased the sensitivity of MCF-7/DDP cells to cisplatin and inhibited cancer cell proliferation by blocking cell cycle distribution and enhancing apoptosis. AEG-1 (astrocyte elevated gene-1) promotes drug resistance by interfering with the ubiquitination and proteasomal degradation of MDR1 (multidrug resistance gene 1), thereby enhancing drug efflux. We found that RRS1 binds to and stabilizes AEG-1 by inhibiting ubiquitination and subsequent proteasomal degradation, which then promotes drug efflux by upregulating MDR1. Furthermore, RRS1 also induces apoptosis resistance in breast cancer cells through the ERK/Bcl-2/BAX signaling pathway. Our study is the first to show that RRS1 sensitizes breast cancer cells to cisplatin by binding to AEG-1, and it provides a theoretical basis to improve the efficacy of cisplatin-based chemotherapy.
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- 2023
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64. Altered diversity and composition of gut microbiota in Wilson's disease
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Xiangsheng Cai, Lin Deng, Xiaogui Ma, Yusheng Guo, Zhiting Feng, Minqi Liu, Yubin Guan, Yanting Huang, Jianxin Deng, Hongwei Li, Hong Sang, Fang Liu, and Xiaorong Yang
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Medicine ,Science - Abstract
Abstract Wilson’s disease (WD) is an autosomal recessive inherited disorder of chronic copper toxicosis with high mortality and disability. Recent evidence suggests a correlation between dysbiosis in gut microbiome and multiple diseases such as genetic and metabolic disease. However, the impact of intestinal microbiota polymorphism in WD have not been fully elaborated and need to be explore for seeking some microbiota benefit for WD patients. In this study, the 16S rRNA sequencing was performed on fecal samples from 14 patients with WD and was compared to the results from 16 healthy individuals. The diversity and composition of the gut microbiome in the WD group were significantly lower than those in healthy individuals. The WD group presented unique richness of Gemellaceae, Pseudomonadaceae and Spirochaetaceae at family level, which were hardly detected in healthy controls. The WD group had a markedly lower abundance of Actinobacteria, Firmicutes and Verrucomicrobia, and a higher abundance of Bacteroidetes, Proteobacteria, Cyanobacteria and Fusobacteria than that in healthy individuals. The Firmicutes to Bacteroidetes ratio in the WD group was significantly lower than that of healthy control. In addition, the functional profile of the gut microbiome from WD patients showed a lower abundance of bacterial groups involved in the host immune and metabolism associated systems pathways such as transcription factors and ABC-type transporters, compared to healthy individuals. These results implied dysbiosis of gut microbiota may be influenced by the host metabolic disorders of WD, which may provide a new understanding of the pathogenesis and new possible therapeutic targets for WD.
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- 2020
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65. The cannabis paradox: contrasting role for marijuana in cardiovascular disease
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Lin Deng, Bin Leng, and Xiaowei Nie
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Medicine ,Biology (General) ,QH301-705.5 - Published
- 2022
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66. Network Meta-Analysis of Different Intravenous Glucocorticoid Regimes for the Treatment of Graves’ Orbitopathy
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Jun Jia, Jingjian Dong, and Lin Deng
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Graves’ disease ,Graves’ ophthalmopathy ,glucocorticoid ,intravenous ,network meta-analysis ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Background: Intravenous glucocorticoid (GC) has been proposed to treat moderately severe Graves’ orbitopathy (GO); however, the optimal regime remains debatable. We therefore performed this network meta-analysis to objectively determine the comparative efficacy and safety of different intravenous GC regimes, including daily, weekly, or monthly intravenous regimes, for the treatment of GO.Methods: We electronically searched Medline (via PubMed), EMBASE (via OVID), and the Cochrane Central Register of Controlled Trials (CENTRAL) (via OVID) to retrieve randomized controlled trials (RCTs) investigating the comparative efficacy and safety of different intravenous GC regimes in GO patients from the inception of each database to March 2021. The latest search was updated in June 2021. The risk of bias of original studies was assessed using the Cochrane risk bias assessment tool. A random-effects Bayesian network meta-analysis was conducted using the Markov chain Monte Carlo (MCMC) simulation. Ranking probabilities of all regimes were calculated to rank all regimes. Statistical analysis was conducted using the ADDIS software.Results: A total of 10 studies involving 593 patients met the selection criteria. Network meta-analysis suggested that the weekly intravenous GC regime (WR) [response: odds ratio (OR), 4.27; 95% creditable interval (CrI); 1.82 to 11.02; clinical activity score change (CASC): standard mean difference (SMD), −0.59; 95% CrI; −1.19 to −0.03) and monthly intravenous regime (MR) (response: OR, 6.32; 95% CrI; 1.25 to 34.96; CASC: SMD, −1.17; 95% CrI; −2.32 to −0.01) were superior to the oral GC (OGC) regime in response and CASC. Meanwhile, pooled results also indicated that the WR was related to the decreased risk of AEs compared with the OGC regime (OR, 0.22; 95% CrI; 0.08–0.62) and daily intravenous GC regime (DR) (OR, 0.19; 95% CrI; 0.03–0.97). Ranking probabilities indicated that the MR and WR have a relatively higher probability of becoming the best option for response, proptosis, and AEs.Conclusion: Based on limited evidence, the WR or MR should be preferentially prescribed to treat patients with moderately severe GO. However, more studies with a large sample size should be conducted to further confirm our findings and compare the WR with the MR.
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- 2022
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67. Comprehensive Analysis of the Tumor Immune Microenvironment Landscape in Glioblastoma Reveals Tumor Heterogeneity and Implications for Prognosis and Immunotherapy
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Rongrong Zhao, Ziwen Pan, Boyan Li, Shulin Zhao, Shouji Zhang, Yanhua Qi, Jiawei Qiu, Zijie Gao, Yang Fan, Qindong Guo, Wei Qiu, Shaobo Wang, Qingtong Wang, Ping Zhang, Xing Guo, Lin Deng, Hao Xue, and Gang Li
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glioblastoma ,tumor immune microenvironment ,proteomics ,metabolomics ,immunotherapy ,target therapy ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundGlioblastoma (GBM) is a fatal brain tumor with no effective treatment. The specific GBM tumor immune microenvironment (TIME) may contribute to resistance to immunotherapy, a tumor therapy with great potential. Thus, an in-depth understanding of the characteristics of tumor-infiltrating immune cells is essential for exploring biomarkers in GBM pathogenesis and immunotherapy.MethodsWe estimated the relative abundances of 25 immune cell types in 796 GBM samples using single sample gene set enrichment analysis (ssGSEA). Unsupervised clustering was used to identify different GBM-associated TIME immune cell infiltration (GTMEI) patterns. The GTMEIscore system was constructed with principal component analysis (PCA) to determine the immune infiltration pattern of individual tumors.ResultsWe revealed three distinct GTMEI patterns with different clinical outcomes and modulated biological pathways. We developed a scoring system (GTMEIscore) to determine the immune infiltration pattern of individual tumors. We comprehensively analyzed the genomic characteristics, molecular subtypes and clinicopathological features as well as proteomic, phosphoproteomic, acetylomic, lipidomic and metabolomic properties associated with the GTMEIscore and revealed many novel dysregulated pathways and precise targets in GBM. Moreover, the GTMEIscore accurately quantified the immune status of many other cancer types. Clinically, the GTMEIscore was found to have significant potential therapeutic value for chemotherapy/radiotherapy, immune checkpoint inhibitor (ICI) therapy and targeted therapy.ConclusionsFor the first time, we employed a multilevel and multiplatform strategy to construct a multidimensional molecular map of tumors with different immune infiltration patterns. These results may provide theoretical basises for identifying more effective predictive biomarkers and developing more effective drug combination strategies or novel immunotherapeutic agents for GBM.
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- 2022
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68. A Comprehensive Analysis of METTL1 to Immunity and Stemness in Pan-Cancer
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Zijie Gao, Jianye Xu, Zongpu Zhang, Yang Fan, Hao Xue, Xing Guo, Lin Deng, Shaobo Wang, Rongrong Zhao, Ping Zhang, and Gang Li
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pan-cancer ,METTL1 ,immunity ,stemness ,immunotherapy ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundPrevious studies have reported the effect of N7-methylguanosine (m7G) regulator methyltransferase like-1 protein (METTL1) in tumor initiation, metastasis, and chemosensitivity. However, the relationship between METTL1 and cancer immune infiltration is not validated and the prognostic significance of METTL1 in pan-cancer remains unclear.MethodsClinical parameters, including gender, age, lifetime, stage, and treatment response were analyzed to evaluate the prognostic significance of METTL1. To evaluate protein level of METTL1, the METTL1 activity was generated by single sample gene set enrichment analysis. The one-class logistic regression algorithm was used to calculate the stemness indices based on transcriptomics and methylation data of pan-cancer and pluripotent stem cells. The relationship between METTL1 expression or activity and tumor immune infiltration were analyzed to explore the significance of METTL1 in tumor immunotherapy. Meanwhile, the correlation between three immunotherapeutic biomarkers and METTL1 was investigated. Finally, to calculate the association between drug sensitivity and METTL1 expression, spearman correlation analysis was performed.ResultsMETTL1 was not intimately related to gender, age, tumor stage, or treatment outcome of the various cancers, but it displayed potential prognostic significance for evaluating patient survival. High METTL1 expression was related to tumor progression-relevant pathways. Moreover, METTL1 exhibited a distinct correlation with tumor immune microenvironment infiltration and stemness indices. In the anti-PD-L1 cohort, patients in treatment response group exhibited significantly higher METTL1 expression than those in the no/limited response group. Further analysis showed that tumor cell lines with higher METTL1 expression were more sensitive to drugs targeting chromatin histone methylation, ERK-MAPK and WNT signaling pathways.ConclusionThis study provides insight into the correlation of METTL1 with tumor immune infiltration and stemness in pan-cancer, revealing the significance of METTL1 for cancer progression and guiding more effective and generalized therapy strategies.
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- 2022
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69. Epsin-mediated degradation of IP3R1 fuels atherosclerosis
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Yunzhou Dong, Yang Lee, Kui Cui, Ming He, Beibei Wang, Sudarshan Bhattacharjee, Bo Zhu, Tadayuki Yago, Kun Zhang, Lin Deng, Kunfu Ouyang, Aiyun Wen, Douglas B. Cowan, Kai Song, Lili Yu, Megan L. Brophy, Xiaolei Liu, Jill Wylie-Sears, Hao Wu, Scott Wong, Guanglin Cui, Yusuke Kawashima, Hiroyuki Matsumoto, Yoshio Kodera, Richard J. H. Wojcikiewicz, Sanjay Srivastava, Joyce Bischoff, Da-Zhi Wang, Klaus Ley, and Hong Chen
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Science - Abstract
Endothelial cell (EC) dysfunction and inflammation contribute to plaque destabilization in atherosclerosis, increasing the risk of thrombotic events. Here, the authors show that epsin promotes EC inflammation via a mechanism involving IP3R1 degradation, and that deletion of epsin in the endothelium prevents EC dysfunctoin and atherosclerosis in mice.
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- 2020
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70. Expression characterization and transcription regulation analysis of porcine Yip1 domain family member 3 gene
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Dongjiao Ni, Xiang Huang, Zhibo Wang, Lin Deng, Li Zeng, Yiwei Zhang, Dongdong Lu, and Xinhua Zou
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pig ,site-directed mutation ,promoter activity ,yip1 domain ,polyinosine-polycytidylic acid ,Animal culture ,SF1-1100 ,Animal biochemistry ,QP501-801 - Abstract
Objective The Yip1 domain family (YIPF) proteins were proposed to function in endoplasmic reticulum (ER) to Golgi transport and maintenance of the morphology of the Golgi, which were homologues of yeast Yip1p and Yif1p. YIPF3, the member 3 of YIPF family was a homolog of Yif1p. The aim of present study was to investigate the expression and regulation mechanism of porcine YIPF3. Methods Quantitative realtime polymerase chain reaction (qPCR) was used to analyze porcine YIPF3 mRNA expression pattern in different tissues and pig kidney epithelial (PK15) cells stimulated by polyinosine-polycytidylic acid (poly [I:C]). Site-directed mutations combined with dual luciferase reporter assays and electrophoretic mobility shift assay (EMSA) were employed to reveal transcription regulation mechanism of porcine YIPF3. Results Results showed that the mRNA of porcine YIPF3 (pYIPF3) was widely expressed with the highest levels in lymph and lung followed by spleen and liver, while weak in heart and skeletal muscle. Subcellular localization results indicated that it expressed in Golgi apparatus and plasma membranes. Upon stimulation with poly (I:C), the level of this gene was dramatically up-regulated in a time- and concentration-dependent manner. pYIPF3 core promoter region harbored three cis-acting elements which were bound by ETS proto-oncogene 2 (ETS2), zinc finger and BTB domain containing 4 (ZBTB4), and zinc finger and BTB domain containing 14 (ZBTB14), respectively. In which, ETS2 and ZBTB4 both promoted pYIPF3 transcription activity while ZBTB14 inhibited it, and these three transcription factors all played important regulation roles in tumorigenesis and apoptosis. Conclusion The pYIPF3 mRNA expression was regulated by ETS2, ZBTB4, and ZBTB14, and its higher expression in immune organs might contribute to enhancing ER to Golgi transport of proteins, thus adapting to the immune response.
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- 2020
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71. Estimation of vertical size-fractionated phytoplankton primary production in the northern South China Sea
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Lin Deng, Wen Zhou, Jie Xu, Wenxi Cao, Jianzu Liao, and Jun Zhao
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Size-fractionated ,Photosynthesis ,Primary production ,Bio-optical ,Phytoplankton absorption coefficient ,Ocean color ,Ecology ,QH540-549.5 - Abstract
Modelling vertical changes of size-fractionated phytoplankton primary production (PP) offers a holistic route to describe marine ecosystems and constitutes an important part of remote sensing to accurately estimate the depth-integrated PP in the global oceans. However, there is no size-fractionated PP model established in the Northern South China Sea (NSCS) yet. In situ measured hyperspectral absorption and irradiance data were used to estimate vertical size-fractionated PP. Results demonstrated that the estimated size-fractionated PP showed good agreement with in-situ measurement. r2s are 0.41, 0.69, and 0.83, and median absolute percentage difference are 23.33%, 25.86%, and 31.05% for pico-, nano-, and micro-PP, respectively. The intercept from the linear relationship between ratio of phytoplankton absorption coefficient (aph(435)/aph(676)) and quantum yield of photosynthesis have the biggest impact on estimation of PP based on Monte Carlo approach. The model derived PP profiles showed an exponential attenuation shape curve from the surface to the bottom in coastal water of NSCS. In contrast, a decreasing pattern with increasing depth with a maximum in the subsurface layer or at the chlorophyll maximum depth was observed in the open ocean of NSCS. Such an approach can be utilized to depict the vertical variations of size-fractionated PP, which can serve as supplementary of remote sense to reveal their three-dimensional structure.
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- 2022
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72. Butorphanol Suppresses the Proliferation and Migration of Osteosarcoma by Promoting the Expression of piRNA hsa_piR_006613
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Pengfei Cui, Deqian Xin, Fu Li, Lin Deng, and Yujie Gao
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butorphanol ,osteosarcoma ,piRNA ,has_piR_006613 ,proliferation ,migration ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Butorphanol, a partial agonist of opioid receptor κ 1 receptor, can and is widely used as an analgesic drug to relieve moderate and severe pain in clinic. Osteosarcoma is one of the most common malignant bone tumor in adolescents under the age of 20. To our knowledge no study has investigated the effect of butorphanol on the proliferation of osteosarcoma cells. In this study, The proliferation of osteosarcoma cells was measured by CCK-8 and colony formation assays, and the migration of osteosarcoma cells were detected by scratch and transwell assays. The expression of piRNA was detected by RNA sequencing and real-time PCR. PiRNA mimics or inhibitors have been used to upregulate or inhibit piRNA expression in osteosarcoma cells, respectively. We found that butorphanol, at the concentration of 10ug/ml or higher, could significantly inhibit the proliferation and migration of osteosarcoma cells. Our resuslts indicated that butorphanol promoted the expression of piRNA hsa_piR_006613 and overexpression of piRNA hsa_piR_006613 inhibited the proliferation and migration of osteosarcoma cells. our study also showed that inhibition of the expression of piRNA hsa_piR_006613 could promote the proliferation and migration of osteosarcoma cells. Butorphanol played the regulatory role on osteosarcoma cells in dependent of piRNA hsa_piR_006613. Butorphanol was found to inhibit the proliferation and migration of osteosarcoma cells by promoting piRNA hsa_piR_006613 expression. Bioinformatics analysis showed that hsa_piR_006613 downregulated FN1 protein expression by binding with 3’-UTR of FN1 mRNA. In all, the present research indicated that butorphanol suppresses the proliferation of osteosarcoma by promoting the expression of piRNA hsa_piR_006613, which downregulated the expression of FN1. Has_piR_006613 may become a new therapeutic target for osteosarcoma.
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- 2022
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73. Teleseismic body waves extracted from ambient noise cross correlation between F-net and ChinArray phase II
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Lin Deng, Weitao Wang, Fang Wang, and Songyong Yuan
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Noise cross correlation ,Body waves ,Array interferometry ,ChinArray ,Geophysics. Cosmic physics ,QC801-809 ,Dynamic and structural geology ,QE500-639.5 - Abstract
The vertical-vertical noise cross-correlation functions (NCFs) between two seismic arrays, the Japan F-net and ChinArray phase II, are calculated using continuous recordings during 2013–2016. After array interferometry to obtain bin stacked NCFs, clear body waves are retrieved at different period bands. Teleseismic direct P waves for distance 15–40 degrees are observed between short period 3–10 s while core reflected PcP/ScS waves are more obvious for longer period 30–60s. The signal-to-noise-ratio (SNR) of the short period P waves reaches its highest point with bin widths around 20 km while SNRs of PcP and ScS increase slowly with bin width. All those body waves demonstrate clear directivity with strong signals traveling from the east. The time-lapse SNR variations for the PcP and ScS show correlation with the occurrence of major earthquakes, while the P-wave SNR demonstrates seasonal variations with additional contribution from major earthquakes. The present results suggest teleseismic body waves can be retrieved through bin stacking, though further processing is still necessary to obtain finer waveforms such as P wave triplications.
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- 2022
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74. The Non-N6-Methyladenosine Epitranscriptome Patterns and Characteristics of Tumor Microenvironment Infiltration and Mesenchymal Transition in Glioblastoma
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Jianye Xu, Zijie Gao, Kaining Liu, Yang Fan, Zongpu Zhang, Hao Xue, Xing Guo, Ping Zhang, Lin Deng, Shaobo Wang, Huizhi Wang, Qingtong Wang, Rongrong Zhao, and Gang Li
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glioblastoma ,non-m6A RNA modification ,tumor microenvironment ,mesenchymal transition ,immunotherapy ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundAn increasing number of RNA modification types other than N6-methyladenosine (m6A) modification have been detected. Nonetheless, the probable functions of RNA modifications beyond m6A in the tumor microenvironment (TME), mesenchymal (MES) transition, immunotherapy, and drug sensitivity remain unclear.MethodsWe analyzed the characteristics of 32 non-m6A RNA modification regulators in 539 glioblastoma (GBM) patients and the TME cell infiltration and MES transition patterns. Using principal component analysis, a non-m6A epitranscriptome regulator score (RM score) model was established. We estimated the association between RM score and clinical characteristics, TME status, GBM subtypes, and drug and immunotherapy response.ResultsThree definite non-m6A RNA modification patterns associated with diverse biological pathways and clinical characteristics were identified. The high RM score group was characterized by a poor prognosis, enhanced immune infiltration, and MES subtype. Further analysis indicated that the high RM score group had a lower tumor mutation burden as well as a weaker response to immunotherapy. The higher RM score group may benefit more from drugs targeting the EGFR and WNT signaling pathways.ConclusionOur study exposed the potential relationship of non-m6A RNA modification regulators with clinical features, TME status, and GBM subtype and clarified its therapeutic value.
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- 2022
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75. Identification and Analysis of Senescence-Related Genes in Head and Neck Squamous Cell Carcinoma by a Comprehensive Bioinformatics Approach
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Lin Deng, Jinglin Mi, Xiaolan Ruan, Guozhen Zhang, Yufei Pan, and Rensheng Wang
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Pathology ,RB1-214 - Abstract
Head and neck cancer is the sixth most frequent cancer all over the world, with the majority of subtypes of head and neck squamous cell carcinoma (HNSCC). Cellular senescence-associated genes have been confirmed to play a critical role in cancer and have the potential to be prognostic biomarkers for cancer. Clinical information of HNSCC samples and expression data were acquired from public databases. Expression profiles of genes related to cellular senescence were used to identify molecular subtypes by consensus clustering. To screen differentially expressed genes (DEGs) between different subtypes, differential analysis was performed. We used the univariate Cox regression to identify prognostic DEGs and performed least absolute shrinkage and selection operator (LASSO) to optimize and construct a prognostic model. CIBERSORT, ESTIMATE, and TIDE tools were applied to estimate immune characteristics. Four molecular subtypes were established based on cellular senescence-associated genes. Differential prognosis was observed among different subtypes with C4 having the longest overall survival and C1 having the worst prognosis. C4 subtype also showed the highest immune infiltration. We screened a total of eight cellular senescence prognosis-related genes and established a cellular senescence-related signature score (CSRS.Score) that could stratify samples into high-CSRS.Score and low-CSRS.Score groups. The high-CSRS.Score group had worse prognosis, lower immune infiltration, and lower response to immunotherapy. We further improved the prognostic model and survival prediction by combining CSRS.Score with clinicopathological features using a decision tree model, which had high predictive accuracy and survival prediction. This study demonstrated an important role of cellular senescence in HNSCC. The identified eight cellular senescence-associated genes have the potential to provide ideas for adjuvant treatment and personalized treatment of HNSCC patients.
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- 2022
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76. Optimal Selection of Earthquake Resisting Schemes for Jakarta-Bandung High-Speed Railway
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Wei Quan, Lin Deng, Xuzheng Liu, and Bibo Gao
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Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
The Jakarta-Bandung high-speed railway is the first overseas project involving China’s high-speed railway. Owing to the high seismic intensity in this area, the optimal selection of earthquake resisting schemes is critical for short-span bridges, and such schemes are related to the safety and cost-effectiveness of the entire line. This study compares the safety and cost-effectiveness of four earthquake resisting schemes: (i) prestressed concrete (PC) simply-supported box beams using common spherical steel bearings; (ii) PC simply-supported box beams using seismic isolation bearings; (iii) steel-concrete (SC) composite simply-supported beams using seismic isolation bearings; (iv) reinforced concrete (RC) rigid frames. The results indicate that PC beams using more expensive seismic isolation bearings reduce the cost of the substructure, making it more cost-effective. In contrast, the scheme of SC composite beams is the most expensive one, and the associated maintenance costs are also the highest. Although the scheme of RC rigid frames is the cheapest among the evaluated schemes, it is only suitable for relatively stiff sites with low pier heights. Overall, PC beams with isolation bearings exhibit good seismic performance and are suitable for prefabricated construction; therefore, this scheme can be applied in various soil conditions with relatively low costs, and it is recommended for use throughout the entire Jakarta-Bandung high-speed railway.
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- 2022
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77. Flexible Lead-Free Piezoelectric Ba0.94Sr0.06Sn0.09Ti0.91O3/PDMS Composite for Self-Powered Human Motion Monitoring
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Lin Deng, Weili Deng, Tao Yang, Guo Tian, Long Jin, Hongrui Zhang, Boling Lan, Shenglong Wang, Yong Ao, Bo Wu, and Weiqing Yang
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flexible piezoelectric sensor ,BSST particles ,piezoelectric composites ,BSST/PDMS ,human motion monitoring ,Biotechnology ,TP248.13-248.65 ,Medicine (General) ,R5-920 - Abstract
Piezoelectric wearable electronics, which can sense external pressure, have attracted widespread attention. However, the enhancement of electromechanical coupling performance remains a great challenge. Here, a new solid solution of Ba1−xSrxSn0.09Ti0.91O3 (x = 0.00~0.08) is prepared to explore potential high-performance, lead-free piezoelectric ceramics. The coexistence of the rhombohedral phase, orthorhombic phase and tetragonal phase is determined in a ceramic with x = 0.06, showing enhanced electrical performance with a piezoelectric coefficient of d33~650 pC/N. Furthermore, Ba0.94Sr0.06Sn0.09Ti0.91O3 (BSST) is co-blended with PDMS to prepare flexible piezoelectric nanogenerators (PENGs) and their performance is explored. The effects of inorganic particle concentration and distribution on the piezoelectric output of the composite are systematically analyzed by experimental tests and computational simulations. As a result, the optimal VOC and ISC of the PENG (40 wt%) can reach 3.05 V and 44.5 nA, respectively, at 138.89 kPa, and the optimal sensitivity of the device is up to 21.09 mV/kPa. Due to the flexibility of the device, the prepared PENG can be attached to the surface of human skin as a sensor to monitor vital movements of the neck, fingers, elbows, spine, knees and feet of people, thus warning of dangerous behavior or incorrect posture and providing support for sports rehabilitation.
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- 2023
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78. The Role of Chaperone-Mediated Autophagy in Hepatitis C Virus-Induced Pathogenesis
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Chieko Matsui, Putu Yuliandari, Lin Deng, Takayuki Abe, and Ikuo Shoji
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hepatitis C virus ,chaperone-mediated autophagy ,CMA-targeting motif ,LAMP-2A ,HSC70 ,lysosome ,Microbiology ,QR1-502 - Abstract
Lysosome incorporate and degrade proteins in a process known as autophagy. There are three types of autophagy; macroautophagy, microautophagy, and chaperone-mediated autophagy (CMA). Although autophagy is considered a nonselective degradation process, CMA is known as a selective degradation pathway. All proteins internalized in the lysosome via CMA contain a pentapeptide KFERQ-motif, also known as a CMA-targeting motif, which is necessary for selectivity. CMA directly delivers a substrate protein into the lysosome lumen using the cytosolic chaperone HSC70 and the lysosomal receptor LAMP-2A for degradation. Hepatitis C virus (HCV) NS5A protein interacts with hepatocyte-nuclear factor 1α (HNF-1α) together with HSC70 and promotes the lysosomal degradation of HNF-1α via CMA, resulting in HCV-induced pathogenesis. HCV NS5A promotes recruitment of HSC70 to the substrate protein HNF-1α. HCV NS5A plays a crucial role in HCV-induced CMA. Further investigations of HCV NS5A-interacting proteins containing CMA-targeting motifs may help to elucidate HCV-induced pathogenesis.
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- 2021
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79. Editorial: DNA Replication Stress and Cell Fate
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Lin Deng, Chun-Long Chen, Yuanliang Zhai, Yunzhou Dong, and Huiqiang Lou
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DNA replication ,replication stress ,fork reversal ,DNA damage repair ,genome instability ,cell fate ,Biology (General) ,QH301-705.5 - Published
- 2021
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80. The Expression and Prognostic Value of SUMO1-Activating Enzyme Subunit 1 and Its Potential Mechanism in Triple-Negative Breast Cancer
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Qingshui Wang, Wenting Zhong, Lin Deng, Qili Lin, Youyu Lin, Hongxia Liu, Luyun Xu, Lingfang Lu, Yajuan Chen, Jianping Huang, Meichen Jiang, Han Xiao, Jie Zhang, He Li, Yuxiang Lin, Chuangui Song, and Yao Lin
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TNBC ,SAE1 ,WGCNA ,prognosis ,cell cycle ,Biology (General) ,QH301-705.5 - Abstract
Background: Triple-negative breast cancer (TNBC) is the most invasive and metastatic subtype of breast cancer. SUMO1-activating enzyme subunit 1 (SAE1), an E1-activating enzyme, is indispensable for protein SUMOylation. SAE1 has been found to be a relevant biomarker for progression and prognosis in several tumor types. However, the role of SAE1 in TNBC remains to be elucidated.Methods: In the research, the mRNA expression of SAE1 was analyzed via the cancer genome atlas (TCGA) and gene expression omnibus (GEO) database. Cistrome DB Toolkit was used to predict which transcription factors (TFs) are most likely to increase SAE1 expression in TNBC. The correlation between the expression of SAE1 and the methylation of SAE1 or quantity of tumor-infiltrating immune cells was further invested. Single-cell analysis, using CancerSEA, was performed to query which functional states are associated with SAE1 in different cancers in breast cancer at the single-cell level. Next, weighted gene coexpression network (WGCNA) was applied to reveal the highly correlated genes and coexpression networks of SAE1 in TNBC patients, and a prognostic model containing SAE1 and correlated genes was constructed. Finally, we also examined SAE1 protein expression of 207 TNBC tissues using immunohistochemical (IHC) staining.Results: The mRNA and protein expression of SAE1 were increased in TNBC tissues compared with adjacent normal tissues, and the protein expression of SAE1 was significantly associated with overall survival (OS) and disease-free survival (DFS). Correlation analyses revealed that SAE1 expression was positively correlated with forkhead box M1 (FOXM1) TFs and negatively correlated with SAE1 methylation site (cg14042711) level. WGCNA indicated that the genes coexpressed with SAE1 belonged to the green module containing 1,176 genes. Through pathway enrichment analysis of the module, 1,176 genes were found enriched in cell cycle and DNA repair. Single-cell analysis indicated that SAE1 and its coexpression genes were associated with cell cycle, DNA damage, DNA repair, and cell proliferation. Using the LASSO COX regression, a prognostic model including SAE1 and polo-like kinase 1 (PLK1) was built to accurately predict the likelihood of DFS in TNBC patients.Conclusion: In conclusion, we comprehensively analyzed the mRNA and protein expression, prognosis, and interaction genes of SAE1 in TNBC and constructed a prognostic model including SAE1 and PLK1. These results might be important for better understanding of the role of SAE1 in TNBC. In addition, DNA methyltransferase and TFs inhibitor treatments targeting SAE1 might improve the survival of TNBC patients.
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- 2021
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81. Angiotensin-Converting Enzyme 2-Based Biosensing Modalities and Devices for Coronavirus Detection
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Ijaz Gul, Shiyao Zhai, Xiaoyun Zhong, Qun Chen, Xi Yuan, Zhicheng Du, Zhenglin Chen, Muhammad Akmal Raheem, Lin Deng, Edwin Leeansyah, Canyang Zhang, Dongmei Yu, and Peiwu Qin
- Subjects
COVID-19 ,ACE2 biosensors ,SARS-CoV-2 ,electrochemical detection ,colorimetric sensors ,low-cost diagnostic ,Biotechnology ,TP248.13-248.65 - Abstract
Rapid and cost-effective diagnostic tests for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) are a critical and valuable weapon for the coronavirus disease 2019 (COVID-19) pandemic response. SARS-CoV-2 invasion is primarily mediated by human angiotensin-converting enzyme 2 (hACE2). Recent developments in ACE2-based SARS-CoV-2 detection modalities accentuate the potential of this natural host-virus interaction for developing point-of-care (POC) COVID-19 diagnostic systems. Although research on harnessing ACE2 for SARS-CoV-2 detection is in its infancy, some interesting biosensing devices have been developed, showing the commercial viability of this intriguing new approach. The exquisite performance of the reported ACE2-based COVID-19 biosensors provides opportunities for researchers to develop rapid detection tools suitable for virus detection at points of entry, workplaces, or congregate scenarios in order to effectively implement pandemic control and management plans. However, to be considered as an emerging approach, the rationale for ACE2-based biosensing needs to be critically and comprehensively surveyed and discussed. Herein, we review the recent status of ACE2-based detection methods, the signal transduction principles in ACE2 biosensors and the development trend in the future. We discuss the challenges to development of ACE2-biosensors and delineate prospects for their use, along with recommended solutions and suggestions.
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- 2022
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82. Pisha sandstone: Causes, processes and erosion options for its control and prospects
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Zhishui Liang, Zhiren Wu, Wenyi Yao, Mohammad Noori, Caiqian Yang, Peiqing Xiao, Yuanbao Leng, and Lin Deng
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Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Pisha sandstone is a special kind of soft rock in the semiarid region along the up and middle reaches of Yellow River and Loess Plateau and is severely eroded by wind, rainfall and gravity force. Pisha sandstone region is called “the most severe water loss and soil erosion in the world” and referred to as the “Earth Cancer” by local residents and experts both at home and abroad. The plan for the control of Pisha sandstone started in the 1950s. Since then a series of projects have been implemented, both engineering and vegetation measures have been developed and widely used to protect Pisha sandstone from erosion. Since seabuckthorn was introduced as a viable approach for soil erosion protection and its implementation resulted in a breakthrough to control Loess Plateau, it was considered as an important and efficient measure. Then the seabuckthorn flexible dam was proposed for coarse sediment retention and fine sediment deposition. And then a new comprehensive control model using consolidation materials combined with vegetation was proposed and promising results were achieved both in laboratory and field demonstrations. In the future, the complex erosion mechanism and ecological carrying capacity should be studied further and more efficient and practical comprehensive measures shall be developed. Moreover, monitoring systems shall be used to predict and detect the changes in the Pisha sandstone slope and structure. Keywords: Water loss and soil erosion, Land degradation, Ecological restoration, Seabuckthorn, Comprehensive measure
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- 2019
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83. Local penetration of doxorubicin via intrahepatic implantation of PLGA based doxorubicin-loaded implants
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Li Gao, Qingshan Li, Jie Zhang, Yixin Huang, Lin Deng, Chenyang Li, Guangping Tai, and Banfeng Ruan
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doxorubicin ,implants ,uplc-ms/ms ,minipig ,local penetration ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Doxorubicin (DOX) is widely used in the chemotherapy of a wide range of cancers. However, intravenous administration of DOX causes toxicity to most major organs which limits its clinical application. DOX-loaded drug delivery system could provide a continuous sustained-release of drugs and enables high drug concentrations at the target site, while reducing systemic toxicity. Additionally, local chemotherapy with DOX may be a promising approach for lowering post-surgical recurrence of cancer. In this study, the sustained-release DOX-loaded implants were prepared by melt-molding method. The implants were characterized with regards to drug content uniformity, micromorphology and drug release profiles. Furthermore, differential scanning calorimetry (DSC) and Fourier transform infrared spectroscopy (FTIR) analyses were carried out to investigate the drug-excipient compatibility. To determine the local penetration of DOX in liver, the minipigs received intrahepatic implantation of DOX-loaded implants by abdominal surgery. UPLC-MS/MS method was used to detect the concentration of DOX in liver tissues. Our results suggested that DOX-loaded implants delivered high doses of drug at the implantation site for a prolonged period and provided valuable information for the future clinical applications of the DOX-loaded implants.
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- 2019
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84. The Landscape of Noncoding RNA in Pulmonary Hypertension
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Lin Deng, Xiaofeng Han, Ziping Wang, Xiaowei Nie, and Jinsong Bian
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pulmonary hypertension ,noncoding RNA ,long noncoding RNA ,circular RNA ,therapeutics ,Microbiology ,QR1-502 - Abstract
The transcriptome of pulmonary hypertension (PH) is complex and highly genetically heterogeneous, with noncoding RNA transcripts playing crucial roles. The majority of RNAs in the noncoding transcriptome are long noncoding RNAs (lncRNAs) with less circular RNAs (circRNAs), which are two characteristics gaining increasing attention in the forefront of RNA research field. These noncoding transcripts (especially lncRNAs and circRNAs) exert important regulatory functions in PH and emerge as potential disease biomarkers and therapeutic targets. Recent technological advancements have established great momentum for discovery and functional characterization of ncRNAs, which include broad transcriptome sequencing such as bulk RNA-sequence, single-cell and spatial transcriptomics, and RNA-protein/RNA interactions. In this review, we summarize the current research on the classification, biogenesis, and the biological functions and molecular mechanisms of these noncoding RNAs (ncRNAs) involved in the pulmonary vascular remodeling in PH. Furthermore, we highlight the utility and challenges of using these ncRNAs as biomarkers and therapeutics in PH.
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- 2022
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85. Prognostic Ability of Enhancer RNAs in Metastasis of Non-Small Cell Lung Cancer
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Jun Liu, Jingyi Jia, Siqiao Wang, Junfang Zhang, Shuyuan Xian, Zixuan Zheng, Lin Deng, Yonghong Feng, Yuan Zhang, and Jie Zhang
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Non-small cell lung cancer ,metastasis ,enhancer RNAs ,regulatory network ,prognosis ,Organic chemistry ,QD241-441 - Abstract
(1) Background: Non-small cell lung cancer (NSCLC) is the most common lung cancer. Enhancer RNA (eRNA) has potential utility in the diagnosis, prognosis and treatment of cancer, but the role of eRNAs in NSCLC metastasis is not clear; (2) Methods: Differentially expressed transcription factors (DETFs), enhancer RNAs (DEEs), and target genes (DETGs) between primary NSCLC and metastatic NSCLC were identified. Prognostic DEEs (PDEEs) were screened by Cox regression analyses and a predicting model for metastatic NSCLC was constructed. We identified DEE interactions with DETFs, DETGs, reverse phase protein arrays (RPPA) protein chips, immunocytes, and pathways to construct a regulation network using Pearson correlation. Finally, the mechanisms and clinical significance were explained using multi-dimensional validation unambiguously; (3) Results: A total of 255 DEEs were identified, and 24 PDEEs were selected into the multivariate Cox regression model (AUC = 0.699). Additionally, the NSCLC metastasis-specific regulation network was constructed, and six key PDEEs were defined (ANXA8L1, CASTOR2, CYP4B1, GTF2H2C, PSMF1 and TNS4); (4) Conclusions: This study focused on the exploration of the prognostic value of eRNAs in the metastasis of NSCLC. Finally, six eRNAs were identified as potential markers for the prediction of metastasis of NSCLC.
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- 2022
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86. Identification of Potential Long Non-coding RNA Expression Quantitative Trait Methylations in Lung Adenocarcinoma and Lung Squamous Carcinoma
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Xiaohong Wu, Yue Gao, Jianlong Bu, Lin Deng, Pinyi Zhang, Meng Chi, Lihua Jiang, Xiaoding Shi, Shangwei Ning, and Guonian Wang
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lung adenocarcinoma ,lung squamous carcinoma ,lncRNAs ,methylation ,prognostic biomarker ,functional analysis ,Genetics ,QH426-470 - Abstract
There are associations between DNA methylation and the expression of long non-coding RNA (lncRNA), also known as lncRNA expression quantitative trait methylations (lnc-eQTMs). Lnc-eQTMs may induce a wide range of carcinogenesis pathways. However, lnc-eQTMs have not been globally identified and studied, and their roles in lung adenocarcinoma (LUAD) and lung squamous carcinoma (LUSC) are largely unknown. In the present study, we identified some differential methylation sites located in genes of long intergenic non-coding RNAs (lincRNAs) and other types of lncRNAs in LUAD and LUSC. An integrated pipeline was established to construct two global cancer-specific regulatory networks of lnc-eQTMs in LUAD and LUSC. The associations between eQTMs showed common and specific features between LUAD and LUSC. Some lnc-eQTMs were also related with survival in LUAD- and LUSC-specific regulatory networks. Lnc-eQTMs were associated with cancer-related functions, such as lung epithelium development and vasculogenesis by functional analysis. Drug repurposing analysis revealed that these lnc-eQTMs may mediate the effects of some anesthesia-related drugs in LUAD and LUSC. In summary, the present study elucidates the roles of lnc-eQTMs in LUAD and LUSC, which could improve our understanding of lung cancer pathogenesis and facilitate treatment.
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- 2020
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87. Molecular Dynamics Simulation Study on the Interactions of Mixed Cationic/Anionic Collectors on Muscovite (001) Surface in Aqueous Solution
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Yuli Di, Ao Jiang, Haiyan Huang, Lin Deng, Dafu Zhang, Wenwei Deng, Rui Wang, Qian Luo, and Shanhua Chen
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molecular dynamics simulation ,mixed cationic and anionic collectors ,muscovite ,mineral flotation ,Technology ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Microscopy ,QH201-278.5 ,Descriptive and experimental mechanics ,QC120-168.85 - Abstract
In this study, the adsorption mechanisms of dodecylamine hydrochloride(DDAHC), sodium dodecyl sulfate (SDS), sodium dodecyl benzene sulfonate(SDBS), and their mixed anionic/cationic collectors at ten different molar ratios on a muscovite (Mcv) surface in neutral aqueous solution were assessed by molecular dynamics simulations (MDS). According to the snapshot, interaction energy, radial distribution function (RDF), and density profile between the Mcv surface and collector molecules, the individual DDAHC collector was an effective collector for the flotation of Mcv. The molar ratio of anionic/cationic collectors was determined to be an essential factor in the flotation recovery of Mcv. The DDAHC collector was involved in the adsorption of the mixed anionic/cationic collectors on the Mcv (001) surface, whereas SDS and SDBS collectors were co-adsorbed with DDAHC. The mixed cationic/anionic collector showed the best adsorption on the Mcv surface in a molar ratio of 2. Additionally, SDBS, which has one more benzene ring than SDS, was more likely to form spherical micelles with DDAHC, thus resulting in better adsorption on the Mcv surface. The results of micro-flotation experiments indicated that the DDAHC collector could improve the flotation recovery of Mcv in neutral aqueous solution, which was in agreement with MDS-derived findings. In conclusion, DDAHC alone is the optimum collector for Mcv flotation under the neutral aqueous conditions, while the mixture of DDAHC and SDBS collectors (molar ratio = 2:1) exhibits the similar flotation performance.
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- 2022
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88. Cross−Talk between Transcriptome Analysis and Physiological Characterization Identifies the Genes in Response to the Low Phosphorus Stress in Malus mandshurica
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Hong Zhao, Yawei Wu, Luonan Shen, Qiandong Hou, Rongju Wu, Zhengchun Li, Lin Deng, and Xiaopeng Wen
- Subjects
Malus mandshurica ,physiological character ,transcriptome analysis ,low−Pi stress ,Pi transporter ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Phosphorus (Pi) is a macronutrient essential for plant growth, development, and reproduction. However, there is not an efficient available amount of Pi that can be absorbed by plants in the soil. Previously, an elite line, MSDZ 109, selected from Malus mandshurica, was justified for its excellent tolerance to low phosphorus (low−Pi) stress. To date, however, the genes involved in low−Pi stress tolerance have not yet been unraveled in this species. Currently, the physiological responses of this line for different days to low−Pi stress were characterized, and their roots as well as leaves were used to carry out transcriptome analysis, so as to illuminate the potential molecular pathways and identify the genes involved in low−Pi stress−response. After exposure to low−Pi treatment (32 µmol/L KH2PO4) for 20 day after treatment (DAF) the biomass of shoots was significantly reduced in comparison with that of the stress−free (control), and root architecture diversely changed. For example, the root growth parameters e.g., length, surface area, and total volume somewhat increase in comparison with those of the control. The activity of acid phosphatase (ACP) increased with the low−Pi treatment, whereas the photosynthetic rate and biomass were declining. The activity of antioxidant enzymes, e.g., superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT), were substantially elevated in response to low−Pi treatment. Many enzyme−related candidate genes e.g., MmCAT1, MmSOD1 and MmPOD21 were up−regulated to low−Pi treatment. Furthermore, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis indicated that the processes of photosynthesis, plant hormone signal transduction, and MAPK signaling pathway were affected in the low−Pi response. In combination with the physiological characterization, several low−Pi−responsive genes, e.g., PHT, PHO, were identified, and the genes implicated in Pi uptake and transport, such as MmPHT1;5, MmPHO1, MmPAP1, etc., were also obtained since their expression status varied among the exposure times, which probably notifies the candidates involved in low−Pi−responsive tolerance in this line. Interestingly, low−Pi treatment activated the expression of transcription factors including the WRKY family, MYB family, etc. The available evidences will facilitate a better understanding of the roles of this line underlying the high tolerance to low−Pi stress. Additionally, the accessible data are helpful for the use of the apple rootstock M. mandshurica under low−Pi stress.
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- 2022
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89. Msuite: A High-Performance and Versatile DNA Methylation Data-Analysis Toolkit
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Kun Sun, Lishi Li, Li Ma, Yu Zhao, Lin Deng, Huating Wang, and Hao Sun
- Subjects
bisulfite sequencing ,bisulfite-free ,CpG dinucleotide ,quality control ,data visualization ,imprinting gene ,Computer software ,QA76.75-76.765 - Abstract
Summary: DNA methylation is a pervasive and important epigenetic regulator in mammalian genome. For DNA methylome profiling, emerging bisulfite-free methods have demonstrated desirable superiority over the conventional bisulfite-treatment-based approaches, although current analysis software could not make full use of their advantages. In this work, we present Msuite, an easy-to-use, all-in-one data-analysis toolkit. Msuite implements a unique 4-letter analysis mode specifically optimized for emerging protocols; it also integrates quality controls, methylation call, and data visualizations. Msuite demonstrates substantial performance improvements over current state-of-the-art tools as well as fruitful functionalities, thus holding the potential to serve as an optimal toolkit to facilitate DNA methylome studies. Source codes and testing datasets for Msuite are freely available at https://github.com/hellosunking/Msuite/. The Bigger Picture: DNA methylation is an essential epigenetic modification responsible for many biological regulation pathways. Despite the fact that various high-throughput methods have been developed for base-resolution DNA methylome profiling, DNA methylation data analysis remains a complex and challenging task. Here, we present Msuite, which has integrated quality control, read alignment, methylation call, and fruitful data-visualization functionalities, aiming to offer an all-in-one package for most of the current DNA methylation profiling assays. Msuite also provides dedicated support for emerging bisulfite-free protocols and outperforms the current tools in terms of higher accuracy and lower computational resource requirement. Hence, Msuite could serve as the optimal toolkit for DNA methylation data analysis as well as facilitating the popularization of emerging bisulfite-free protocols.
- Published
- 2020
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90. Corrigendum: Cyclooxygenase-2 and β-Catenin as Potential Diagnostic and Prognostic Markers in Endometrial Cancer
- Author
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Lin Deng, Haiyan Liang, and Yi Han
- Subjects
cyclooxygenase-2 ,β-catenin ,wnt3a ,endometrial cancer ,prognostic marker ,diagnostic marker ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2020
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91. Autologous Bone Marrow Mononuclear Cell Transplantation Therapy Improved Symptoms in Patients with Refractory Diabetic Sensorimotor Polyneuropathy via the Mechanisms of Paracrine and Immunomodulation: A Controlled Study
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Wei Wei, Li Li, Lin Deng, Zhong-Jing Wang, Jing-Jian Dong, Xiao-Yu Lyu, Ting Jia, Li Wang, Hong-Xiang Wang, Hong Mao, and Shi Zhao
- Subjects
Medicine - Abstract
We recently reported that transplantation of autologous bone marrow mononuclear cells (BM-MNCs) may be an effective and promising therapy to treat refractory diabetic sensorimotor polyneuropathy (DSPN) in patients with type 2 diabetes mellitus (T2DM). This study was designed to investigate the potential mechanisms of BM-MNCs therapy, which recruited 60 patients with DSPN, 30 T2DM patients without complications, and 30 healthy control participants. All clinical parameters, the levels of inflammatory markers, and growth factors in the three groups were compared. Patients in DSPN group had higher level of tumor necrosis factor-α (TNF-α) (DSPN vs control, 412.90 ± 64.58 vs 374.81 ± 63.18 pg/mL, P < 0.01) and lower level of vascular endothelial growth factor (VEGF) (DSPN vs control, 140.93 ± 24.78 vs 157.39 ± 25.11 pg/mL, P < 0.01) than those in control group. DSPN group had the highest level of soluble intercellular adhesion molecule-1 (sICAM-1) among three groups (DSPN and DM vs control, 1477.56 ± 228.00 and 1342.17 ± 237.54 vs 1308.00 ± 200.94 ng/mL, P < 0.05). The level of nerve growth factor in the DSPN group was slightly lower than that in the DM group (DSPN vs DM, 3509.11 ± 438.39 vs 3734.87 ± 647.50 pg/mL, P < 0.05). All patients with DSPN received one intramuscular injection of BM-MNCs and clinical follow-ups after the therapy for 2 days, 1, 4, 12, 24, and 48 weeks. Neuropathic symptoms of foot pain, numbness, and weakness were significantly improved within 4 weeks after BM-MNCs injection. Patients with DSPN were divided into the responder ( n = 35) and nonresponder groups ( n = 19) based on the improvement of nerve conduction velocity at 12 weeks post-transplantation. Compared with nonresponders, responders were younger (57.3 ± 5.2 vs 62.0 ± 4.8, P < 0.01), had a shorter history of diabetes (7.1 ± 2.7 vs 11.2 ± 5.4 years, P < 0.01), and had higher numbers of mobilized CD34 + cells (17.61 ± 2.64 vs 14.79 ± 1.62 ×10 5 /L, P < 0.01) and BM-MNCs (12.05 ± 2.16 vs 9.84 ± 1.53 ×10 8 /L, P < 0.01). The levels of TNF-α and sICAM-1 decreased just after BM-MNCs injection in both groups and slowly reverted to baseline levels. The duration of the downtrend of TNF-α and sICAM-1 in the responder group lasted longer than that in the nonresponder group. Serum level of VEGF in the responder group increased immediately after BM-MNC therapy and reached the highest point after the injection for 12 weeks. On the other hand, VEGF levels in the nonresponder group only increased slightly. Binary logistic regression was performed to evaluate the corresponding prognostic factors for BM-MNCs treatment. The number of applied CD34 + cells and the duration of diabetes were the independent predictors of responding to BM-MNCs therapy. No adverse event associated with the treatment was observed during follow-up observations. These results indicated that BM-MNCs transplantation is an effective and promising therapeutic strategy to treat refractory DSPN. The immune regulation and paracrine function of BM-MNCs may contribute to the improvement of DSPN. Trial registration: Chinese Clinical Trial Registry, ChiCTR-TRC-12002570. URL: http://www.chictr.org.cn/showproj.aspx?proj=6981
- Published
- 2020
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92. Cyclooxygenase-2 and β-Catenin as Potential Diagnostic and Prognostic Markers in Endometrial Cancer
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Lin Deng, Haiyan Liang, and Yi Han
- Subjects
cyclooxygenase-2 ,β-catenin ,wnt3a ,endometrial cancer ,prognostic marker ,diagnostic marker ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Objectives: Explore the diagnostic and prognostic value of cyclooxygenase-2 and wnt3a/β-catenin pathway in endometrial cancer.Methods: A prospective cohort study of 93 women underwent hysterectomy at the China-Japan Friendship Hospital (61 patients with primary endometrial carcinoma, and 32 control patients with uterine prolapse or leiomyoma of uterus). Cox2 and β-catenin expression were determined by immunohistochemistry. The serum levels of cox2 and wnt3a were detected via ELISA assays.Results: Patients with endometrial cancer showed overexpression of cox2 and β-catenin, as well as significantly higher serum levels of cox2 and wnt3a. The serum cox2 level, which is highly significant in predicting the risk of disease progression (RR, 9.617, 95% confidence interval, 1.162–79.622, P = 0.036), showed good diagnostic and prognostic potential, with cut-off of 55 U/L, but alongside β-catenin expression in tissues, were related to poor prognosis (RR, 12.426; 95% confidence interval, 1.618–95.450; P = 0.015).Conclusion: Serum levels of cox2 and wnt3a exhibited diagnostic value for endometrial cancer. Cox2 serum levels and β-catenin expression also showed potential value of prognostic prediction. Cox2 serum levels might be a potential marker for early diagnosis and prognosis prediction in endometrial cancer.
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- 2020
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93. Ovarian Microcystic Stromal Tumor: A Case Report and Literature Review
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Lin Deng, Dingqing Feng, Jing Liang, Jie Luo, and Bin Ling
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microcystic stromal tumor ,ovary ,immunophenotype ,diagnosis ,treatment ,Medicine (General) ,R5-920 - Abstract
Background: Microcystic stromal tumor is a recently described subtype of ovarian tumor characterized by microcystic pattern and diffuse immunoreactivity for CD10, vimentin, and β-catenin and negative for EMA. However, its diagnostic criterion and standard treatment remain unclear.Case presentation: We report a rare case of a left side microcystic stromal tumor with diameter about 7 cm in a 25-year-old female and summarize all cases of MCST reported in this study. The present patient underwent left ovarian tumor resection. Generally, the tumor was solid and cystic mixed. Immunohistochemically, the tumor was expressed CD10, WT1, cyclin D1 and vimentin, and nuclear immunoreactivity for β-catenin but negative for α-inhibin, calretinin, CK AE1/AE3, PLAP, SALL-4, CK7, P53, EMA, CD99, AFP, desmin, CgA, E-cadherin, and melanA.Conclusion: Unilateral ovary, solid-cystic, and a larger than 4–8 cm pelvic mass without serious abdominal pain are its clinical features. The immunophenotype of vimentin+/CD10+/WT-1+/β-catenin+(nuclei)/cyclin D1+ is supportive of diagnosis. For these patients, unilateral oophorectomy dissection could be selected.
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- 2020
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94. Numerical Investigation of the Effect of Viscoelasticity on Drop Retraction and the Evaluation of Interfacial Tension between Polymer Melts
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Lin Deng, Yun Zhang, Shaofei Jiang, Jiquan Li, and Huamin Zhou
- Subjects
Polymers and polymer manufacture ,TP1080-1185 - Abstract
The purpose of this paper is twofold. The first is to numerically investigate and reveal the effect of polymer viscoelasticity on the retraction of a deformed drop using the lattice Boltzmann (LB) method and polymer kinetic theory. More importantly, the second is to propose a novel method to evaluate the interfacial tension between polymer melts based on the numerical study. Compared with the conventional deformed drop retraction method (DDRM), the present method is designed to greatly reduce the impact of polymer viscoelasticity on measuring interfacial tension. To verify, the interfacial tension between molten PP and POE is evaluated using the proposed method and obviously closer result to the true value is shown.
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- 2020
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95. Cyclooxygenase 2 Promotes Proliferation and Invasion in Ovarian Cancer Cells via the PGE2/NF-κB Pathway
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Xiao Zhang, Keqin Yan, Lin Deng, Jing Liang, Haiyan Liang, Dingqing Feng, and Bin Ling
- Subjects
Medicine - Abstract
Ovarian cancer is the leading cause of death among gynecological malignancies. Cyclooxygenase 2 is widely expressed in various cancer cells and participates in the occurrence and development of tumors by regulating a variety of downstream signaling pathways. However, the function and molecular mechanisms of cyclooxygenase 2 remain unclear in ovarian cancer. Here, we demonstrated that cyclooxygenase 2 was highly expressed in ovarian cancer and the expression level was highly correlated with ovarian tumor grades. Further, ovarian cancer cells with high expression of cyclooxygenase 2 exhibit enhanced proliferation and invasion abilities. Specifically, cyclooxygenase 2 promoted the release of prostaglandin E2 upregulated the phosphorylation levels of phospho-nuclear factor-kappa B p65. Celecoxib, AH6809, and BAY11-7082 all can inhibit the promoting effect of cyclooxygenase 2 on SKOV3 and OVCAR3 cell proliferation and invasion. Besides, celecoxib inhibited SKOV3 cell growth in the xenograft tumor model. These data suggest that high expression of cyclooxygenase 2 promotes the proliferation and invasion of ovarian cancer cells through the prostaglandin E2/nuclear factor-kappa B signaling pathway. Cyclooxygenase 2 may be a potential therapeutic target for the treatment of ovarian cancer.
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- 2019
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96. Demonstration of a Microfiber-Based Add–Drop Filter Using One Tapered Fiber
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Lin Deng, Xiaonan Guo, Yinghao Meng, Ting Zhao, Zilong Liu, Huifu Xiao, Guipeng Liu, Yonghui Tian, and Jianhong Yang
- Subjects
Optical fiber filters ,filters ,optical resonators and optical fiber devices. ,Applied optics. Photonics ,TA1501-1820 ,Optics. Light ,QC350-467 - Abstract
We propose a novel approach to demonstrate an add-drop filter based on microfiber knot resonator (MFKR). The two coupled regions and four ports (including input port, through port, drop port, and add port) of this device are formed using the same one microfiber. By reconnecting the ends of the through and add ports with other two microfibers, this structure could serve as an add-drop filter, which is a key building block in the fields of optical networks and optical information processing system. The MFKR-based add-drop filter with the quality factor (Q-factor) of 21 000 and a diameter of 740 μm is demonstrated successfully. The intrinsic loss and extinction ratio are about -2 and 18.5 dB for the drop port, and -4.6 and 10.7 dB for the through port, respectively. The fabrication process also shows the feasibility and simplicity of this device.
- Published
- 2018
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97. Multiscale Modeling and Simulation of Polymer Blends in Injection Molding: A Review
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Lin Deng, Suo Fan, Yun Zhang, Zhigao Huang, Huamin Zhou, Shaofei Jiang, and Jiquan Li
- Subjects
polymer blends ,injection molding ,microstructure ,multiscale simulation ,Organic chemistry ,QD241-441 - Abstract
Modeling and simulation of the morphology evolution of immiscible polymer blends during injection molding is crucial for predicting and tailoring the products’ performance. This paper reviews the state-of-the-art progress in the multiscale modeling and simulation of injection molding of polymer blends. Technological development of the injection molding simulation on a macroscale was surveyed in detail. The aspects of various models for morphology evolution on a mesoscale during injection molding were discussed. The current scale-bridging strategies between macroscopic mold-filling flow and mesoscopic morphology evolution, as well as the pros and cons of the solutions, were analyzed and compared. Finally, a comprehensive summary of the above models is presented, along with the outlook for future research in this field.
- Published
- 2021
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98. An Improved Large-Field Microscopic Speckle Interferometry System for Dynamic Displacement Measurement of MEMS
- Author
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Chenjia Gao, Zhan Gao, Yuhao Niu, Xu Wang, Jieming Zhao, and Lin Deng
- Subjects
large-field ,speckle interferometer ,MEMS ,displacement measurement ,Applied optics. Photonics ,TA1501-1820 - Abstract
The traditional microscopic speckle interferometer has limited applications in engineering due to its small field of view. In this paper, we propose a large-field microscopic speckle interferometer which embeds two doublet lens groups in the improved Mach–Zehnder optical path structure to expand its field of view. At the same time, the new system can reduce the coherent noise of reflected light in the optical path. We use this new system to measure the dynamic displacement process of the entire surface of the microchips. The experimental results show that our improved measurement system can achieve large-field, real-time and high-precision dynamic measurement of micro-electromechanical systems (MEMS).
- Published
- 2021
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99. Micro Vibration Measurement with Microscopic Speckle Interferometry Based on Orthogonal Phase
- Author
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Chenjia Gao, Zhan Gao, Yuhao Niu, Xu Wang, Jieming Zhao, and Lin Deng
- Subjects
micro vibration ,real-time ,full-field ,microscopic speckle interferometry ,orthogonal phase ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
A micro-device vibration measurement method based on microscopic speckle interferometry combined with orthogonal phase is presented. This method utilizes the approximate linear distribution characteristics of orthogonal points (points satisfying the condition that the initial phase difference equal to π/2) to quickly obtain the vibration information of the measured object. Compared with common optical measurement methods, this method does not require scanning imaging and can realize real-time full-field measurement. Moreover, the measurement principle and equipment is simple, so there is no need to introduce a stroboscopic light source or heterodyne device.
- Published
- 2021
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100. Early Lung Adenocarcinoma in Mice: Micro-Computed Tomography Manifestations and Correlation with Pathology
- Author
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Lin Deng, Shi Man Xiao, Jin Wei Qiang, Yong Ai Li, and Yu Zhang
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Lung cancer is the most common fatal malignancy for both men and women and adenocarcinoma is the most common histologic type. Early diagnosis of lung cancer can significantly improve the survival rate of patients. This study aimed to investigate the micro-computed tomography (micro-CT) manifestations of early lung adenocarcinoma (LAC) in mice and to provide a new perspective for early clinical diagnosis. Early LAC models in 10 mice were established by subcutaneously injecting 1-methyl-3-nitro-1-nitrosoguanidine (MNNG) solution. Micro-CT scan and multiple planar reconstruction (MPR) were used for mouse lungs. Micro-CT features of early LAC, especially the relationships between tumor and bronchus, were analyzed and correlated with pathology. Micro-CT findings of early LAC were divided into three types: non-solid (n = 8, 6%), partly solid (n = 85, 64%) and totally solid (n = 39, 30%). Tumor-bronchus relationships, which could be observed in 110 of 132(83%) LAC, were classified into four patterns: type I (n = 16, 15%), bronchus was truncated at the margin of the tumor; type II (n = 33, 30%), bronchus penetrated into the tumor with tapered narrowing and interruption; type III (n = 38, 35%), bronchus penetrated into the tumor with a patent and intact lumen; type IV (n = 99, 90%), bronchus ran at the border of the tumor with an intact or compressed lumen. Micro-CT manifestations of early LAC correlated well with pathological findings. Micro-CT can clearly demonstrate the features of mouse early LAC and bronchus-tumor relationships, and can also provide a new tool and perspective for the study of early LAC.
- Published
- 2017
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