339 results on '"Leclercq, Julie"'
Search Results
52. Toward the Genome-wide analysis of Transcriptional and post-Transcriptionnal regulations in hevea
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Leclercq, Julie, Wu, Shuangyang, and Montoro, Pascal
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F30 - Génétique et amélioration des plantes ,K10 - Production forestière - Abstract
In model plant species, the involvement of small non-coding RNAs in transcriptional and post-transcriptional regulation of gene expressions under environmental constraints is well documented. In Hevea, microtranscriptomic studies were carried out on several Hevea clones, tissues with regard to various abiotic stress. Tapping Panel Dryness (TPD) syndrome is a major physiological disease, caused by an excessive ROS production that leads to loss in natural rubber production. Previous studies also revealed that small RNA distributions can change in response to rubber harvesting stress in a TPD susceptible clone PB 260. A majority of 21-nt sRNA was observed in latex of TPD-affected trees, whereas 24-nt sRNAs were more abundant in latex from healthy trees. The shift from transcriptional to post-transcriptional regulations in response to stress could be a biological function shared between rubber clones, and needs to be further explored. Deeper analyses are under way to annotate MIR genes as well of Repeats Elements and Transposable Elements in the Hevea genomic sequences available. Partial conservation of miRNA/target justifies research programs for Hevea as cleavage sites of some predicted target genes by sRNA can be partially conserved in Hevea compared to Arabidopsis. Discovery of miRNA/target couples through “degradome” analysis, TE-derived siRNAs and gene-related siRNAs can lead to a full comprehensive picture of post- transcriptional and transcriptional regulations of genome expression by sRNA.
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- 2017
53. Genome-wide analysis of genes related to reactive oxygen species production and neutralization in Hevea brasiliensis and their regulation in laticifer
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Zhang, Yi, Leclercq, Julie, Wu, Shuangyang, Ortega-Abboud, Enrique, Pointet, Stéphanie, and Montoro, Pascal
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F60 - Physiologie et biochimie végétales ,F30 - Génétique et amélioration des plantes - Abstract
Natural rubber is produced in laticifers of Hevea brasiliensis. Latex is the cytoplasm of laticifers. Latex harvesting by tapping and ethephon stimulation generates multiple stress into latex cells. Over a threshold of stress, redox homeostasis cannot be maintained that leads to oxidative stress resulting in latex flow stoppage and consequently to rubber yield reduction, a physiological syndrome called Tapping Panel Dryness (TPD). Given the availability of the sequence of rubber genome, the essential genes involved in production and scavenging of reactive oxygen species (ROS) were identified and their expression characterized in laticifer. Among the 452 Hevea redox-related genes, 160 were expressed in latex. The main pathways of ROS production and scavenging were predicted for each subcellular compartment based on sequence features and their expression levels upon ethephon and TPD.
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- 2017
54. Comprendre les bases moléculaires de la perturbation de l'homéostasie redox intra-laticifère afin de mieux lutter contre l'apparition de la maladie de l'encoche sèche (TPD) chez Hevea brasiliensis
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Leclercq, Julie
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Physiologie du développement ,Biopolymère ,Caoutchouc ,Homéostasie ,Biologie moléculaire ,F62 - Physiologie végétale - Croissance et développement ,Plante transgénique ,K10 - Production forestière ,F30 - Génétique et amélioration des plantes ,Hevea brasiliensis ,Production végétale ,Maladie des plantes ,Expression des gènes ,H20 - Maladies des plantes - Published
- 2017
55. Overexpression of EcGSH1 induces glutathione production and alters somatic embryogenesis and plant development in Hevea brasiliensis
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Martin, Florence, primary, Abati, Vanessa, additional, Burel, Arnaud, additional, Clément-Vidal, Anne, additional, Sanier, Christine, additional, Fabre, Denis, additional, Woraathasin, Natthakorn, additional, Rio, Maryannick, additional, Besret, Pierre, additional, Farinas, Benoît, additional, Montoro, Pascal, additional, and Leclercq, Julie, additional
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- 2018
- Full Text
- View/download PDF
56. Juvenile Hevea transgenic plants over-expressing transcription factor HbERF-IXc5 develop more latex cells than wild-type material
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Lestari, Retno, Rio, Maryannick, Martin, Florence, Leclercq, Julie, Dessailly, Florence, Sanier, Christine, Melliti, Semi, Suharsono, Sony, and Montoro, Pascal
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F60 - Physiologie et biochimie végétale ,F30 - Génétique et amélioration des plantes - Abstract
Mechanical wounding through tapping has long been known to induce laticifer differentiation in Hevea brasiliensis. Recent studies reveal that dehydration, hydrogen peroxide, and jasmonates can similarly play a role in wound-induced laticifer differentiation. The Hevea ethylene response factor gene, HbERF-IXc5, is thought to be an ortholog to ERF1 of Arabidopsis. ERF1 has been suggested as a component of defence responses through the involvement of the ethylene and jasmonic acid signalling pathways. In this study, Agrobacterium tumefaciens-mediated genetic transformation was carried out with this candidate gene. A histological analysis of HbERF-IXc5 lines revealed several changes in anatomy, particularly in terms of the number of laticifer cells. The results suggest that HbERF-IXc5 is a transcription factor driving the expression of some target genes involved in jasmonate-induced laticifer differentiation.
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- 2016
57. Overexpression ofHevea brasiliensisethylene response factorHbERF-IXc5enhances growth and tolerance to abiotic stress and affects laticifer differentiation
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Lestari, Retno, primary, Rio, Maryannick, additional, Martin, Florence, additional, Leclercq, Julie, additional, Woraathasin, Natthakorn, additional, Roques, Sandrine, additional, Dessailly, Florence, additional, Clément-Vidal, Anne, additional, Sanier, Christine, additional, Fabre, Denis, additional, Melliti, Sémi, additional, Suharsono, Sony, additional, and Montoro, Pascal, additional
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- 2017
- Full Text
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58. Engineering rubber plants with high antioxidant capacity
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Martin, Florence, Clément-Vidal, Anne, Sanier, Christine, Fabre, Denis, Montoro, Pascal, and Leclercq, Julie
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F60 - Physiologie et biochimie végétale ,F62 - Physiologie végétale - Croissance et développement ,F30 - Génétique et amélioration des plantes - Abstract
Reactive oxygen species (ROS) scavenging systems are involved in various biotic and abiotic stresses. Oxidative stress in latex cells is related to an in situ coagulation of rubber particles that hampers latex flow, and consequent rubber production. Many antioxidant enzymes catalyse redox reactions, such as the ascorbate-glutathione cycle. Genetic modification was undertaken to improve the ROS-scavenging system. Hevea transgenic lines over-expressing the HbCuZnSOD gene, converting O2 - into H2O2, and the E. coli GSHJ, involved in glutathione biosynthesis, were successfully established and regenerated. These modifications dramatically affected the somatic embryogenesis process and plant development. The TS5T8An and TS l 2T3A82 lines overexpressing HbCuZnSOD and EcGSHJ, respectively, were selected for further experiment under a water deficit treatment. TS5T8An plants showed a higher SOD activity and pro li ne content than control plants. TS 12T3A82 plants had a higher thiol and proline contents as well as a higher glutathione reductase activity in leaves. These results suggest that increasing ROS-scavenging capacity improved physiological status for a better tolerance to abiotic stress.
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- 2015
59. Evaluation of eleven reference genes for Reverse Transcriptase Quantitative PCR of rubber tree under water deficit
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Putranto, Riza Arief, Leclercq, Julie, and Montoro, Pascal
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Arn messager ,Identification ,Stress dû à la sécheresse ,F60 - Physiologie et biochimie végétale ,Stress abiotique ,F30 - Génétique et amélioration des plantes ,Physiologie végétale ,Hevea brasiliensis ,Transcriptase inversé ,PCR ,Gène ,Expression des gènes ,H50 - Troubles divers des plantes ,U30 - Méthodes de recherche - Abstract
Reverse Transcriptase Quantitative PCR (RTqPCR) is a powerful technique in order to detect low abundance of mRNA in the plant cell. The measurement of transcript abundance is relative to the control of expression such as housekeeping genes. Therefore, the reliability of RT-qPCR depends essentially to the choice of these internal controls also called reference genes. That is the reason why a prior validation of reference genes is suggested for every set of cDNA samples used in a new RT-qPCR experiment. This study aimed to analyze the stability of eleven selected housekeeping genes in three Hevea brasiliensis tissues (leaf, bark and root) under15 days of moderate water deficit. Total RNA was isolated from 18 samples consisting of control and stressed-plants collected at day-0 (D0), day-5 (D5) and day-15 (D15).The quality of cDNA synthesized was examined by PCR using HbActin primer. The eleventh primers encoding Hevea housekeeping genes (HbActin, HbelF1Aa, HbUBC4, HbUBC2b, HbYLS8, HbRH2b, HbRH8, HbUBC2a, HbαTub, Hb40S and HbUBI) were validated using PCR amplification. The Crossing-point (Cp) values were measured using a second derivative method after RT-qPCR analysis revealing a significantly higher Cp mean values for 11 housekeeping genes at D5 compared to D0 and D15 sampling points. This study suggests that a simple coefficient of variation (CV) method can be used to rank Hevea reference genes based on its stable expression. Five housekeeping genes (HbRH2b, HbRH8, HbUBC4, HbαTUB and HbActin) can be used for RT-qPCR analysis in Hevea brasiliensis under moderate water deficit. The HbRH2b gene was the most stable among others.
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- 2015
60. Establishment of Hevea brasiliensis lines overexpressing genes involved in ethylene signalling pathway
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Lestari, Retno, Rio, Maryannick, Martin, Florence, Leclercq, Julie, Dessailly, Florence, Suharsono, Sony, Montoro, Pascal, Lestari, Retno, Rio, Maryannick, Martin, Florence, Leclercq, Julie, Dessailly, Florence, Suharsono, Sony, and Montoro, Pascal
- Abstract
The gaseous plant hormone ethylene has a wide variety of applications in agriculture and horticulture. Ethylene Response Factors (ERF) are the last transcription factors of the ethylene signalling pathway and control a large number of ethylene-responsive genes. Two Hevea brasiliensis ERF, HbERF-IXc4 and HbERF-IXc5, are orthologs to ERF1 a key regulator at the crosstalk of ethylene and jasmonate signalling pathways. These genes were suggested to play an important role in regulating latex cell metabolism in response to tapping and ethephon stimulation. In this study, transgenic lines overexpressing HbERF-IXc4 and HbERF-IXc5 under control of 35S CaMV and HEV2.1 promoter have been conducted. Transgenic Hevea lines were obtained by Agrobacterium tumefaciens-mediated genetic transformation. The somatic embryogenesis process was affected by these modifications. Agrobacterium tumefaciens genetic transformation procedure has been developed from friable callus line for clone PB260. Hevea callus was sub-cultured as small aggregates on paromomycin selection medium. Transgenic callus lines were established from sub-aggregates showing full GFP activity. Ten transgenic lines were confirmed as transgenic by Southern blot hybridization. This result showed successfully establishment of H. brasiliensis transgenic lines. Further plant regeneration and characterization were necessary to understand the function HbERF-IXc4 and HbERF-IXc5 in latex.
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- 2016
61. Expression profiles, characterization and function of HbTCTP in rubber tree (Hevea brasiliensis)
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Deng, Zhi, Chen, Jiangshu, Leclercq, Julie, Zhou, Zhuangzhi, Liu, Changren, Liu, Hui, Yang, Hong, Montoro, Pascal, Xia, Zhihui, Li, Dejun, Deng, Zhi, Chen, Jiangshu, Leclercq, Julie, Zhou, Zhuangzhi, Liu, Changren, Liu, Hui, Yang, Hong, Montoro, Pascal, Xia, Zhihui, and Li, Dejun
- Abstract
As a highly conserved protein, the translationally controlled tumor protein (TCTP) carries out vital roles in various life processes. In rubber tree, two TCTP genes, HbTCTP and HbTCTP1, were cloned, but only HbTCTP1 was studied in details. In this study, cis-acting regulatory elements, expression patterns, subcellular localization, interacting proteins, and antioxidant activity of HbTCTP were systematically analyzed. Besides the common cis-acting regulatory elements, HbTCTP promoter also harbored various known cis-elements that respond to hormone/stresses. Being consistent with the aforementioned results, HbTCTP was regulated by drought, low temperature, high salt, ethylene (ET), wounding, H2O2, and methyl jasmonate (MeJA) treatments. HbTCTP was expressed throughout different tissues and developmental stages of leaves. In addition, HbTCTP was associated with tapping panel dryness (TPD). HbTCTP was localized in the membrane, cytoplasm and the nucleus, and interacted with four proteins rubber elongation factor (REF), 17.5 kDa heat shock family protein, annexin, and REF-like stress related protein 1. Being similar to HbTCTP1, HbTCTP also indicated antioxidant activity in metal-catalyzed oxidation (MCO) system. Our results are useful for further understanding the molecular characterization and expression profiles of HbTCTP, but also lay a solid foundation for elucidating the function of HbTCTP in rubber tree.
- Published
- 2016
62. Détermination in vitro de la bioaccessibilité de 8 éléments traces dans les sols de la Wallonie (Belgique) soumis à des retombées atmosphériques de proximité
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Leclercq, Julie, Pereira, Benoît, Titeux, Hugues, Sonnet, Philippe, Lox, André, and UCL - SST/ELI/ELIE - Environmental Sciences
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éléments traces métalliques ,Wallonie ,366A ,bioaccessibilité - Abstract
En Wallonie (Belgique), SPAQυE (Société Publique d’Aide à la Qualité de l’Environnement) a initié une étude intitulée POLLUSOL 2, dont l’objectif principal était d’investiguer les sols des zones urbaines et industrielles soumises à des retombées atmosphériques de proximité, en excluant les pollutions locales. Ce sont 1126 échantillons de sols, 1341 légumes et 435 échantillons d’eau souterraine qui ont été prélevés par une équipe inter-universitaire. Afin d’évaluer la bioaccessibilité des polluants dans les sols récoltés, 237 échantillons représentatifs ont été sélectionnés et analysés pour 8 polluants inorganiques selon la méthode du groupe BARGE Bioaccessibility Research Group of Europe. Les résultats montrent que la fraction bioaccessible au stade gastrique augmente selon la séquence suivante : Cr et Ni (80%). La bioaccessibilité au stade intestinal est substantiellement plus faible, excepté pour l’arsenic. Les résultats obtenus vont pouvoir être utilisés par SPAQυE dans le cadre de ses Evaluations Quantitatives des Risques Sanitaires, afin d’estimer l’exposition par ingestion de terre contaminée en faisant appel à des hypothèses plus proches de la réalité.
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- 2014
63. Reactive oxygen species in Hevea brasiliensis latex and relevance to Tapping Panel Dryness
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Zhang, Yi, primary, Leclercq, Julie, additional, and Montoro, Pascal, additional
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- 2016
- Full Text
- View/download PDF
64. Establishment of Hevea brasiliensis lines overexpressing genes involved in ethylene signalling pathway
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LESTARI, Retno, primary, RIO, Maryannick, additional, MARTIN, Florence, additional, LECLERCQ, Julie, additional, DESSAILLY, Florence, additional, SUHARSONO, ., additional, and MONTORO, Pascal, additional
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- 2016
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65. Expression analysis of ROS producing and scavenging enzyme-encoding genes in rubber tree infected by Pseudocercospora ulei
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Koop, Daniela Martins, primary, Rio, Maryannick, additional, Sabau, Xavier, additional, Almeida Cardoso, Saulo Emilio, additional, Cazevieille, Chantal, additional, Leclercq, Julie, additional, and Garcia, Dominique, additional
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- 2016
- Full Text
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66. Expression Profiles, Characterization and Function of HbTCTP in Rubber Tree (Hevea brasiliensis)
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Deng, Zhi, primary, Chen, Jiangshu, additional, Leclercq, Julie, additional, Zhou, Zhuangzhi, additional, Liu, Changren, additional, Liu, Hui, additional, Yang, Hong, additional, Montoro, Pascal, additional, Xia, Zhihui, additional, and Li, Dejun, additional
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- 2016
- Full Text
- View/download PDF
67. Evaluation of eleven reference genes for Reverse Transcriptase Quantitative PCR of rubber tree under water deficit Evaluasi sebelas gen referensi untuk Reverse Transcriptase Quantitative PCR pada tanaman karet tercekam kekeringan
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PUTRANTO, Riza Arief, primary, LECLERCQ, Julie, additional, and MONTORO, Pascal, additional
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- 2016
- Full Text
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68. Production of Hevea brasiliensis transgenic lines overexpressing transcription factors involved in ethylene signalling pathway
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Lestari, Retno, Rio, Maryannick, Martin, Florence, Pirrello, Julien, Dessailly, Florence, Leclercq, Julie, Suharsono, Sony, Montoro, Pascal, Lestari, Retno, Rio, Maryannick, Martin, Florence, Pirrello, Julien, Dessailly, Florence, Leclercq, Julie, Suharsono, Sony, and Montoro, Pascal
- Abstract
The gaseous plant hormone ethylene has a wide variety of applications in agriculture and horticulture. Ethephon, an ethylene releaser, is used to stimulate natural rubber production in Hevea brasiliensis latex cells. Ethylene Response Factors (ERF) are the last transcription factors if the ethylene signalling pathway and control a large number of ethylene-responsive genes. Two Hevea ERF, HbERF-IXc4 ans HbERF-IXc5, are orthologs to ERF1 a jey regulator at the crosstalk of ethylene and jasmonate signalling pathways. These genes were suggested to play an important role in regulating latex cell metabolism in response to tapping and ethephon stimulation. We regenerated transgenic lines overexpressing HbERF-IXc4 ans HbERF-IXc5 under the control of two promoters, 35S CaMV and HEV2.1, respectively. The latter was shown to direct latex-specific expression in non-photosynthetic tissues. The somatic embryogenesis process was affected by these modifications. however, successful plant regeneration has been obtained. Further characterization of this plant material is in progress to understand the function HbERF-IXc4 ans HbERF-IXc5 in latex. (Texte intégral)
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- 2015
69. Involvement of ethylene in the latex metabolism and tapping panel dryness of Hevea brasilensis
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Putranto, Riza Arief, Herlinawati, Eva, Rio, Maryannick, Leclercq, Julie, Piyatrakul, Piyanuch, Gohet, Eric, Sanier, Christine, Oktavia, Fetrina, Pirrello, Julien, Kuswanhadi, Montoro, Pascal, Putranto, Riza Arief, Herlinawati, Eva, Rio, Maryannick, Leclercq, Julie, Piyatrakul, Piyanuch, Gohet, Eric, Sanier, Christine, Oktavia, Fetrina, Pirrello, Julien, Kuswanhadi, and Montoro, Pascal
- Abstract
Ethephon, an ethylene releaser, is used to stimulate latex production in Hevea brasiliensis. Ethylene induces many functions in latex cells including the production of reactive oxygen species (ROS). The accumulation of ROS is responsible for the coagulation of rubber particles in latex cells, resulting in the partial or complete stoppage of latex flow. This study set out to assess biochemical and histological changes as well as changes in gene expression in latex and phloem tissues from trees grown under various harvesting systems. The Tapping Panel Dryness (TPD) susceptibility of Hevea clones was found to be related to some biochemical parameters, such as low sucrose and high inorganic phosphorus contents. A high tapping frequency and ethephon stimulation induced early TPD occurrence in a high latex metabolism clone and late occurrence in a low latex metabolism clone. TPD-affected trees had smaller number of laticifer vessels compared to healthy trees, suggesting a modification of cambial activity. The differential transcript abundance was observed for twenty-seven candidate genes related to TPD occurrence in latex and phloem tissues for ROS-scavenging, ethylene biosynthesis and signalling genes. The predicted function for some Ethylene Response Factor genes suggested that these candidate genes should play an important role in regulating susceptibility to TPD.
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- 2015
70. Ethylene response factors are controlled by multiple harvesting stresses in Hevea brasiliensis
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Putranto, Riza Arief, Duan, Cuifang, Kuswanhadi, Chaidamsari, Tetty, Rio, Maryannick, Piyatrakul, Piyanuch, Herlinawati, Eva, Pirrello, Julien, Dessailly, Florence, Leclercq, Julie, Bonnot, François, Tang, Chaorong, Hu, Songnian, Montoro, Pascal, Putranto, Riza Arief, Duan, Cuifang, Kuswanhadi, Chaidamsari, Tetty, Rio, Maryannick, Piyatrakul, Piyanuch, Herlinawati, Eva, Pirrello, Julien, Dessailly, Florence, Leclercq, Julie, Bonnot, François, Tang, Chaorong, Hu, Songnian, and Montoro, Pascal
- Abstract
Tolerance of recurrent mechanical wounding and exogenous ethylene is a feature of the rubber tree. Latex harvesting involves tapping of the tree bark and ethephon is applied to increase latex flow. Ethylene is an essential element in controlling latex production. The ethylene signalling pathway leads to the activation of Ethylene Response Factor (ERF) transcription factors. This family has been identified in Hevea brasiliensis. This study set out to understand the regulation of ERF genes during latex harvesting in relation to abiotic stress and hormonal treatments. Analyses of the relative transcript abundance were carried out for 35 HbERF genes in latex, in bark from mature trees and in leaves from juvenile plants under multiple abiotic stresses. Twenty-one HbERF genes were regulated by harvesting stress in laticifers, revealing an overrepresentation of genes in group IX. Transcripts of three HbERF-IX genes from HbERF-IXc4, HbERF-IXc5 and HbERF-IXc6 were dramatically accumulated by combining wounding, methyl jasmonate and ethylene treatments. When an ethylene inhibitor was used, the transcript accumulation for these three genes was halted, showing ethylene-dependent induction. Subcellular localization and transactivation experiments confirmed that several members of HbERF-IX are activator-type transcription factors. This study suggested that latex harvesting induces mechanisms developed for the response to abiotic stress. These mechanisms probably depend on various hormonal signalling pathways. Severalmembers of HbERF-IX could be essential integrators of complex hormonal signalling pathways in Hevea.
- Published
- 2015
71. Factors influencing the in-vitro oral bioaccessibility in topsoil from industrial areas (Wallonia, Belgium)
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Pereira, Benoît, Titeux, Hugues, Schneider, Arnaud, Leclercq, Julie, Sonnet, Philippe, and UCL - SST/ELI/ELIE - Environmental Sciences
- Subjects
oral bioaccessibility test ,trace metal element ,Unified BARGE Method ,366A ,industrial soil - Abstract
INTRODUCTION Oral bioaccessibility - the fraction of soil contaminant that dissolves in the human gastrointestinal tract - can be evaluated using various chemical extraction tests, some of which are designed to mimic biochemical conditions. As for any other partial extraction tests, bioaccessibility can be expected to be influenced not only by the soil parameters, but also by the characteristics of the contamination, such as the metal speciation, the contamination aging, etc. Here, we try to relate bioaccessibility measurements to factors that can only be obtained when the sampled soils are surveyed and mapped at a regional scale. The factors we consider are the type of industrial activity responsible for soil contamination in industrialized areas, the land-use, and the regional level of contaminant concentrations. The question which we address is whether a fixed bioaccessibility value can be proposed for risk-based approach of contaminated land or a variable bioaccessibility value must be considered in order to take into account regional differences. To substantiate our conclusions about the influence of these factors on bioaccessibility measurements, chemical sequential extraction tests were also performed on the same soil samples. MATERIALS AND METHODS In the course of the POLLUSOL 2 survey, 237 topsoil samples have been collected in urban parks, vegetable gardens and forests within several industrial areas of Wallonia (South Belgium). The in-vitro oral bioaccessibility test used in this study is Unified BARGE Method (UBM). We looked at the ‘stomach’ compartment of the test for the 237 samples, and at the ‘stomach and intestine’ compartment for a subset of 178 samples. Analysis of the extracts for eight trace metal elements (As, Cd, Co, Cr, Cu, Ni, Pb, Zn) was carried out by ICP-AES. Total metal contents were measured by aqua regia extraction and ICP-AES. The sequential extraction was performed on a subset of 103 samples out of the 237 using the modified three-step BCR extraction procedure, whose purpose is to evaluate the speciation of trace metals. In this method, the operationally-defined fractions are the exchangeable and weak-acid soluble fraction (step 1), the reductible fraction (step 2), and oxidisable fraction (step3). The BCR sequential extraction procedure was carried out for the eight trace metal elements. Statistical data analysis and regression curve fitting were carried out using robust statistics (StatDA package of the R software). RESULTS AND DISCUSSION We found very good correlation between the 'stomach' and the 'stomach and intestine' phases for As, Cd and Zn (r > 0.9). For Co, Cr, Ni and Pb, we found also a good correlation, although somewhat weaker (0.6-0.9). Because of this correlation, only 'stomach' values will be discussed in what follows. For As, Cd, Co, Cr, Cu, Ni and Pb, relative bioaccessibility was found to be constant across the entire range of total metal content. Zinc was the only metal that exhibited a relative bioaccessibility which varied according to the total metal content and the type of industrial activity. For the eight trace metals, the bioaccessible fraction was influenced to a variable degree by one or several soil parameters (pH, organic matter, Ca, Mg, Mn and Fe). A very good linear relationship was found between the sum of the two first steps of the BCR sequential extraction and the bioaccessible fraction (gastric) of UBM the test (e.g. R2> 97% for Zn). The bioaccessible fraction amounted to between 61% (for Co) and 137% (for Cu) of the exchangeable, acid-soluble and iron and manganese oxyhydroxide-bound fraction of the Walloon industrial soils obtained by the BCR extraction method. CONCLUSIONS Our data suggest that, for the eight trace metals studied in the industrial and urban zones of Wallonia, the bioaccessible fractions can be satisfactorily predicted basing on the total metal contents. This prediction can be improved by taking into account soil properties in the regression model. For Zn, a variable relative bioaccessibility should be considered, depending on the type of industrial activity and the level of total metal content. Our data also show that the sum of the two first steps of BCR sequential extraction closely predicts the ‘stomach’ phase measured by the BARGE method.
- Published
- 2013
72. Assessment of trace metal and PAH concentrations in soils from peri-industrial regions: lessons from a survey in the Walloon region (Belgium)
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Pereira, Benoît, Titeux, Hugues, Leclercq, Julie, Sonnet, Philippe, and UCL - SST/ELI - Earth and Life Institute
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urban baseline concentrations ,trace metal elements ,PAH ,peri-industrial areas - Abstract
Soils from peri-industrial areas are usually disturbed by urbanization, mixed with technogenic material and affected by smoke and dust fallout. A precise knowledge of the local baseline content of pollutants in soil is needed by the government agencies in order to implement the environmental protection policies. However, in peri-industrial areas, pollutant concentrations often exhibit a high spatial variability which requires an appropriate investigation methodology. Here, we outline the key results obtained from a survey on baseline soil concentrations of trace metal elements (TME) and polycyclic aromatic hydrocarbons (PAH) in peri-industrial soils from the Walloon region (Belgium). For the survey, 8 areas were selected in order to represent the range of current and historical industrial activities of the region. These include chemical plant, steelmaking blast furnace, collieries, coal agglomeration and coke production plants and nonferrous metals smelting plants (Pb, Zn). The sampling points (70 to 200 in each area) were spatially distributed and were representative of the various land uses that occur in peri-industrial area: vegetable gardens, urban parks, farmland and forest. At each sampling point, we collected a sample of the topsoil and, when possible, a sample from a deeper horizon (between 60cm and 1m depth). Concentrations were measured for 5 major elements, 14 TME and 16 PAH (EPA). This sampling and analyzing scheme made it possible to distinguish the effects of the four main factors that affected the concentrations of TME and PAH in the topsoil: (1) the pedogeological soil type (2) the predominant industrial activities responsible for the atmospheric fallout of pollutants (3) the amount and the nature of the technogenic materials and (4) the type of land use. In the peri-industrial areas of Wallonia, we found that the presence of As, Co, Cr, Ni, Be, Ni and Mo was predominantly linked with the pedogeological soil type and was not related to atmospheric fallout of pollutants. Two different kinds of industrial activities were shown to have a clear footprint in terms of TME and PAH contents in topsoil: the non-ferrous metallurgy smelting plants were associated with high values in Cd, Pb and Zn, and the steel and coal industrial activities were associated with high PAH values and moderately high Zn values. The presence of technogenic material resulted in elevated Ba, Cu, Hg, Ni, Pb and PAH values. An influence of land use on pollutant contents in topsoil was also observed: compared to other land uses, vegetable garden soils showed the highest values of Ba, Cu, Zn and PAH. Vegetable garden and forest soils had the highest Hg, Pb, Sb and Sn values. In conclusion, the results of this survey show that our sampling and analyzing scheme is well-designed to identify which types of soils potentially constituted a risk for the environment and for human health. These results provide the valuable input data needed to draw meaningful and reliable maps of baseline contents of pollutants in soil.
- Published
- 2013
73. POLLUSOL 2 project: large scale investigation of soil-to-plant and soil-to-human exposition pathways in urban areas near industry in Wallonia
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Leclercq, Julie, Colinet, Gilles, Pereira, Benoît, Titeux, Hugues, and UCL - SST/ELI/ELIE - Environmental Sciences
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pollutant bioavaibility ,background concentrations ,trace metal elements ,366A - Abstract
Since 2007, SPAQuE, with the collaboration of four universities in Belgium (UCL-ELIE, UMONS, Ulg-GxABT and Ulg-Aquapôle), has investigated urban areas near industry in Wallonia (Belgium), collecting data in residential gardens, woodland and cultivated or grazing areas. The objectives of the project were to define urban background soil quality values and to investigate soil-to-plant and soil-to-human exposition pathways. 1126 soil samples, 1341 vegetables and 435 groundwater samples were collected and analyzed. Seventeen inorganic pollutants, 33 organic pollutants, 6 soil parameters and 5 major elements were analyzed in soil, 16 inorganic and 16 organic pollutants in vegetables and 20 inorganic pollutants and 74 organic compounds in groundwater. Furthermore, several laboratory experiments were carried out by the universities: - To study human bioaccessibility via the gastrointestinal tract, the Unified BARGE (Bioaccessibility Research Group of Europe) Method was applied to 307 soils samples for 8 inorganic pollutants; - To estimate the soil-to-plant transfer, several chemical extractives were tested: 480 soil samples with CaCl2 and 126 samples with EDTA, DPTA and Mehlich 3 method; - To develop an identification key, 96 samples of slag were analyzed by x-ray. The collected data were used to: - Map pollutants background concentrations in soils and groundwater ; - Develop tools designed to provide a better estimation of soil-to-plant, soil-to-human and soil-to-water transfers ; - Assess the human health exposure level. The POLLUSOL 2 results will be an important asset for the Walloon administration when implementing the legislation about potentially contaminated sites. The presentation will focus on the POLLUSOL 2 results regarding the soil-to-plant and soil-to-human transfers, and their impact on risk assessment studies.
- Published
- 2013
74. Overexpression of <italic>Hevea brasiliensis</italic> ethylene response factor <italic>HbERF‐IXc5</italic> enhances growth and tolerance to abiotic stress and affects laticifer differentiation.
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Lestari, Retno, Rio, Maryannick, Martin, Florence, Leclercq, Julie, Woraathasin, Natthakorn, Roques, Sandrine, Dessailly, Florence, Clément‐Vidal, Anne, Sanier, Christine, Fabre, Denis, Melliti, Sémi, Suharsono, Sony, and Montoro, Pascal
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HEVEA ,ETHYLENE ,GENE expression in plants ,PLANT histology ,ABIOTIC stress ,LATEX - Abstract
Summary: Ethylene response factor 1 (ERF1) is an essential integrator of the jasmonate and ethylene signalling pathways coordinating a large number of genes involved in plant defences. Its orthologue in
Hevea brasiliensis ,HbERF‐IXc5 , has been assumed to play a major role in laticifer metabolism and tolerance to harvesting stress for better latex production. This study sets out to establish and characterize rubber transgenic lines overexpressingHbERF‐IXc5 . Overexpression ofHbERF‐IXc5 dramatically enhanced plant growth and enabled plants to maintain some ecophysiological parameters in response to abiotic stress such as water deficit, cold and salt treatments. This study revealed thatHbERF‐IXc5 has rubber‐specific functions compared toArabidopsis ERF1 as transgenic plants overexpressingHbERF‐IXc5 accumulated more starch and differentiated more latex cells at the histological level. The role of HbERF‐IXc5 in driving the expression of some target genes involved in laticifer differentiation is discussed. [ABSTRACT FROM AUTHOR]- Published
- 2018
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75. Transcriptional regulation of ethylene biosynthetic and signalling pathways in Hevea brasiliensis
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Putranto, Riza Arief, Piyanuch Piyatrakul, Cuifang Duan, Maryannick Rio, Leclercq, Julie, and Montoro, Pascal
- Published
- 2012
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76. Development of new varietal types based on rejuvenation by somatic embryogenesis and propagation by conventional budding or microcuttings in Hevea brasiliensis
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Montoro, Pascal, Carron, Marc-Philippe, Granet, Françoise, Lardet, Ludovic, Leclercq, Julie, Dessailly, Florence, Martin, Florence, Uche, E., Rio, Maryannick, and Oliver, Gérald
- Subjects
Bouturage ,Micropropagation ,F30 - Génétique et amélioration des plantes ,Hevea brasiliensis ,F02 - Multiplication végétative des plantes ,Multiplication végétative ,Embryogénèse somatique ,Régénération in vitro - Abstract
Hevea brasiliensis has been the only commercial source of natural rubber for a century. This plant species, which is planted on more than 10 million hectares, is of major importance for the economies of producing countries in Southeast Asia and West Africa. Cloning by budding on rootstocks derived from illegitimate seedlings made it possible to select the best individuals and obtain substantial genetic gain in the 1940s compared to seedling plantations. From the 1970s to date, the development of micropropagation techniques has not led to any commercial application for the multiplication of self-rooted clones. However, some serious leads have been advanced for achieving large-scale multiplication of improved material in the medium term, using biotechnologies. Although their multiplication rate is low, microcuttings and primary somatic embryogenesis techniques produce better quality planting material than budded clones. Conversely, maintained somatic embryogenesis gives a higher multiplication rate, but several developmental parameters of the in vitro plantlets are affected. A combination of embryogenlc callus cryopreservation and indirect secondary somatic embryogenesis has made it possible to reduce the length of time calli are exposed to hormones and the number of proliferation cycles. Although the quality of the in vitro plantlets has been improved, the maintained embryogenesls pathway Involving callus multiplication remains problematic. Combining primary somatic embryogenesis to rejuvenate the planting material and multiplication by budding or microcuttings seems to be an alternative for improving the planting material. Rejuvenated budded clones have been planted On 80 hectares by CIRAD and Michelin. These trials reveal better budding and growth success for four clones compared to conventional budded clones confirming previous results from small-scale trials on eleven clones. At the same time, a team at CATAS has demonstrated the merits of microcuttings from emblings. Besides, a highly efficient transgenesis technique has been developed for Hevea using maintained embryogenic friable callus. Although the quality of the planting material is affected by the regeneration of plants using maintained somatic embryogenesis, this technique remains an essential tool for functional genomics. Functional analyses have been launched for several genes such as transcription factors, an ethylene receptor and genes Involved in the detoxification of activated oxygen species. These three decades of work on rubber tree micropropagation have resulted In primary somatic embryogenesis being considered as an efficient and true-type rejuvenation technique. The rejuvenation of 11 rubber tree clones has led to the establishment of rejuvenated budwood gardens on an agronomy trial scale. This has also resulted in an awareness of the role played by juvenility in planting material vigour and the need to maintain it in the budwood gardens of new selected clones. Maintained somatic embryogenesis entails a risk of somaclonal variation. Based on the results obtained for other woody species recalcitrant to micropropagatlon, an alternative using direct secondary somatic embryogenesis might alleviate the problem. Lastly, cloning own-rooted plants offers major prospects for the selection and multiplication of rootstocks, which will have a substantial future impact in a context of adaptation to climate change.
- Published
- 2012
77. Production of mutants affected in hormone signalling to dissect defence mechanisms in Hevea brasiliensis: the case of ethylene
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Montoro, Pascal, Rio, Maryannick, Leclercq, Julie, Martin, Florence, Lorenzini, Eve, and Dessailly, Florence
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fungi ,food and beverages ,F62 - Physiologie végétale - Croissance et développement ,F30 - Génétique et amélioration des plantes - Abstract
Production of mutants by genetic transformation is one alternative to dissect the response to hormonal treatment. Ethylene is an important plant hormone involved in latex production. Transgenic Hevea brasiliensis plants overexpressing an ethylene mutant receptor etrl -1 from Arabidopsis thaliana were regenerated. These plants did not show any morphological response the ethephon stimulation. This plant material is a source of information to understand the role of ethylene in Hevea brasiliensis.
- Published
- 2012
78. Expression analysis of ROS scavenging enzyme encoding genes in rubber tree infected by Microcyclus ulei
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Koop, Daniela Martins, Rio, Maryannick, Sabau, Xavier, Cardoso, Sandro, Fernandes, V., Leclercq, Julie, and Garcia, Dominique
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Hevea brasiliensis ,Microcyclus ulei ,F30 - Génétique et amélioration des plantes ,H20 - Maladies des plantes - Abstract
South American Leaf Blight (SALB), caused by the ascomycete Microcyclus ulei is responsible for the low productivity of rubber tree in Latin America and represents an important threat for rubber plantations in Asia and Africa, where production is derived from highly susceptible clones. In order to identify candidate genes involved in the resistance, an unigene set of 1623 ESTs were obtained from five SSH libraries. Arrays analyses were performed to identify genes differentially expressed in resistant and susceptible cultivars. Fourteen genes were selected for further gene expression analysis in three non-inoculated and inoculated genotypes: FX2784 (HR), MDF180 (partially resistant) and PB314 (susceptible) from 24 to 216 hpi. These genes are involved in ROS-scavenging systems (HbCuZnSOD, HbMnSOD, HbCat, HbAPX1, HbAPX2, HbMDHAR, HbGCL1, HbGCL2, HbOASTL) and leaf senescence (HbCASP, HbPCYST, HbWRKY2, HbPLY, HbKAT2). Six genes were differentially expressed in the different genotypes and/or during the infection. The average basal levels of HbCat, HbGCL1 and 2 expressions in MDF180 were respectively 55-fold and 2- to 3-fold lower than in the other genotypes. HbPCYST was both up-regulated 216 hpi in inoculated and non-inoculated MDF180 tissues. HbWRKY2 was up-regulated in inoculated leaves of MDF180 at 216 hpi while in PB314, the up-regulation started at 96 hpi with a peak of expression at 168 hpi. HbPLY was up-regulated in PB314 inoculated tissue at 168 hpi while in MDF180 and FX2784 a down-regulation was observed in inoculated tissues. The results were compared with histological observations. These genes can be considered as reporter genes of the oxidative status and senescence of the leaf during the infection.
- Published
- 2012
79. microRNAs: new regulatores of biological function in Hevea brasilienis
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Leclercq, Julie, Gebelin, Virginie, Kuswanhadi, Chaidamsari, Tetty, Duan, Cuifang, and Montoro, Pascal
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Latex ,F60 - Physiologie et biochimie végétale ,Stress ,F30 - Génétique et amélioration des plantes ,ARN ,Hevea brasiliensis ,Régulation physiologique ,H50 - Troubles divers des plantes ,Oxydation - Abstract
Fine regulation of gene expression is partially ensured by microRNAs (miRNAs) in response to external stimuli. They negatively regulate gene expression by targeting the cleavage or inhibit the translation of target messenger RN As (mRNAs). In Hevea brasiliensis, environmental and harvesting stresses are known to affect natural rubber production. Deep sequencing of small RN As was carried out on plantlets, subjected to severe abiotic stress, and on latex from trees affected or not by TPD, using the Solexa technique. By combining the LeARN pipeline, data from the Plant microRNA database (PMRD) and Hevea EST sequences, we identified 68 conserved miRNA families already characterized in other plant species, and 15 putatively novel miRNA families. MiRNA targets were computationally predicted and analysed. Targets involved in rubber biosynthesis, ROS-scavenging systems and ethylene perception and transduction pathway are presented.
- Published
- 2012
80. Transgenic plants over-expressing HbCuZnSOD cytosolic isoform are more tolerant to a water deficit
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Leclercq, Julie, Martin, Florence, Sanier, Christine, Clément-Vidal, Anne, Fabre, Denis, Oliver, Gérald, Lardet, Ludovic, Ayar, Ayan, Peyramard, Mathieu, and Montoro, Pascal
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Hevea brasiliensis ,Résistance à la sécheresse ,fungi ,food and beverages ,F62 - Physiologie végétale - Croissance et développement ,H50 - Troubles divers des plantes ,Plante transgénique ,F30 - Génétique et amélioration des plantes - Abstract
Reactive oxygen species (ROS) scavenging systems are involved in various biotic and abiotic stresses. Genetic engineering of Hevea was attempted to strengthen plant defences against ROS accumulation. Hevea transgenic plant lines over-expressing cytosolic HbCuZnSOD gene driven by a 35S CAMV promoter were successfully established and regenerated. The overexpression affected somatic embryogenesis and in plant development. The water deficit tolerance of two fast-growing HbCuZnSOD over-expressing lines (TS5T3Af and TS4T8An) was evaluated. Plants from line TS4T8An displayed lower stomatal conductance, a higher proline content and an activation of all ROS-scavenging enzymes suggesting a better protection against ROS.
- Published
- 2011
81. Deep sequencing of Hevea brasiliensis small RNAs
- Author
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Gebelin, Virginie, Argout, Xavier, Rio, Maryannick, Engchuan, Worrawat, Ruiz, Manuel, and Leclercq, Julie
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Hevea brasiliensis ,F30 - Génétique et amélioration des plantes ,F62 - Physiologie végétale : croissance et développement - Published
- 2011
82. Molecular genetics and functional genomics studies for identifying QTLs and genes underlying tolerance to SALB and latex production in Hevea brasiliensis
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Montoro, Pascal, Clément-Demange, André, Garcia, Dominique, Granet, Françoise, Leclercq, Julie, Le Guen, Vincent, Pujade-Renaud, Valérie, and Seguin, Marc
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Hevea brasiliensis ,Microcyclus ulei ,F30 - Génétique et amélioration des plantes ,H20 - Maladies des plantes - Published
- 2011
83. Development of a new pCAMBIA binary vector using Gateway® technology
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Leclercq, Julie, primary, Szabolcs, Toth, additional, Martin, Florence, additional, and Montoro, Pascal, additional
- Published
- 2015
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84. Low response rate after cetuximab combined with conventional chemoradiotherapy in patients with locally advanced anal cancer: Long-term results of the UNICANCER ACCORD 16 phase II trial
- Author
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Levy, Antonin, primary, Azria, David, additional, Pignon, Jean-Pierre, additional, Delarochefordiere, Anne, additional, Martel-Lafay, Isabelle, additional, Rio, Emmanuel, additional, Malka, David, additional, Conroy, Thierry, additional, Miglianico, Laurent, additional, Becouarn, Yves, additional, Malekzadeh, Katty, additional, Leclercq, Julie, additional, Juzyna, Beata, additional, Ezra, Patrick, additional, Lemanski, Claire, additional, and Deutsch, Eric, additional
- Published
- 2015
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85. Analysis of the clone PB 260 transcriptome and evaluation of the number of genes in Hevea brasiliensis
- Author
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Montoro, Pascal, Argout, Xavier, Sarah, Gautier, Kuswanhadi, Chaidamsari, Tetty, Rio, Maryannick, Leclercq, Julie, and Ruiz, Manuel
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clone ,Hevea brasiliensis ,F30 - Génétique et amélioration des plantes - Abstract
Transcript sequences were produced for the Hevea brasiliensis clone PB 260 by the pyrosequencing technique. Total mRNAs were isolated from different tissues col!ected from plants at different stages of development and having undergone different treatments in order to have the most complete representation of the expressed genome. A pipeline of bioinformatics analyses was developed to assemble the reads produced by the GS-FLX 454 (Roche Applied Science) in contigs. This database of transcript sequences for clone PB 260 is a source ofinformationfor molecular biologists and geneticists. The number of genes expressed in Hevea brasiliensis was also evaluated.
- Published
- 2010
86. Identification of signalling factors involved in the regulation of laticifer metabolism by tapping and Ethephon stimulation in Hevea brasiliensis
- Author
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Lestari, Retno, Putranto, Riza Arief, Piyatrakul, Piyanuch, Duan, Cuifang, Rio, Maryannick, Martin, Florence, Pirrello, Julien, Dessailly, Florence, Leclercq, Julie, Kuswanhadi, Montoro, Pascal, Lestari, Retno, Putranto, Riza Arief, Piyatrakul, Piyanuch, Duan, Cuifang, Rio, Maryannick, Martin, Florence, Pirrello, Julien, Dessailly, Florence, Leclercq, Julie, Kuswanhadi, and Montoro, Pascal
- Abstract
Hevea brasiliensis (Willd. ex A Juss.) Mull. Arg. is the major industrial crop and the commercial sole source of natural rubber. Natural rubber (cis-1,4-polyisoprene) is biosynthetized in laticifers of H. brasiliensis. The latex is collected after tapping the soft bark. Ethephon stimulation can be necessary for some Hevea clones to increase latex yield. This process is highly stressful! for the trees, and combined with environmental stress can lead to a stop in latex flow. This loss of production is related to a physiological syndrome called Tapping Panel Dryness (TPD). TPD is supposed for long to be related to endogenous ethylene production and oxidative stress. Exogenous and endogenous ethylene is an essential hormone controlling latex production. Ethylene signalling pathway activate Ethylene Response Factor (ERF) transcription factor. The ERF family is divided into ten groups with specific functions. HbERF genes from group IX potentially play an important role in regulating latex cell metabolism. Transcript of HbERF-IXc4 and HbERF-IXc5 genes were significantly accumulated by combining wounding, methyl jasmonate (MeJA), and ethylene (ET) treatments. Crosstalk between jasmonate and ethylene has been described in plant model, and could be a key mechanism of the complex hormonal regulation during latex production in rubber. Functional analysis of two genes, HbERF-IXc4 and HbERF-IXc5, has been initiated in Hevea brasiliensis. Transgenic lines have been established by somatic embryogenesis. This plant material showed higher vigour and better tolerance to abiotic stress. Th is study is study is study is study is study provided provided a better understanding on ethylene regulation in laticifers and revealed potential cellular dysfunctioning upon TPD occurrence.
- Published
- 2014
87. Research advances on in vitro culture and micropropagation in France
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Montoro, Pascal, Dessailly, Florence, Martin, Florence, Leclercq, Julie, Rio, Maryannick, Montoro, Pascal, Dessailly, Florence, Martin, Florence, Leclercq, Julie, and Rio, Maryannick
- Published
- 2014
88. Transcriptional and post-transcriptional regulation of the jasmonate signalling pathway in response to abiotic and harvesting stress in Hevea brasiliensis
- Author
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Pirrello, Julien, Leclercq, Julie, Dessailly, Florence, Rio, Maryannick, Piyatrakul, Piyanuch, Kuswanhadi, Tang, Chaorong, Montoro, Pascal, Pirrello, Julien, Leclercq, Julie, Dessailly, Florence, Rio, Maryannick, Piyatrakul, Piyanuch, Kuswanhadi, Tang, Chaorong, and Montoro, Pascal
- Abstract
Background: Latex harvesting in Hevea brasiliensis amounts to strong abiotic stress that can cause a halt in production in the most susceptible clones. Although the role of jasmonic acid has been suggested in laticifer differentiation, its role in latex production and in the response to harvesting stress has received very little attention. Only a few key genes acting in the COI-JAZ-MYC module have been isolated and studied at transcriptional level. Results: Use of a reference transcriptome obtained on rubber clone PB 260 covering a large number of tissues under different environmental conditions enabled us to identify 24 contigs implicate d in the jasmonate signalling pathway in the rubber tree. An analysis of their expression profile by qPCR, combined with hierarchical clustering, suggested that the jasmonate signalling pathway is highly activated in laticifer cells and, more particularly, in the response to harvesting stress. By comparison with their genomic sequences, the existence of regulation by alternative splicing was discovered for JAZ transcripts in response to harvesting stress. Lastly, positive transcriptional regulation of the HbJAZ_1405 gene by MYC was demonstrated. Conclusion: This study led to the identification of all actors of jasmonate signalling pathway and revealed a specific gene expression pattern in latex cells. In-depth analysis of this regulation showed alternative splicing that has been previously shown in Arabidopsis. Interestingly, genotypic variation was observed in Hevea clones with contrasting latex metabolism. This result suggests an involvement of jasmonate signalling pathway in latex production. The data suggest that specific variability of the JA pathway may have some major consequence s for resistance to stress. The data support the hypothesis that a better understanding of transcriptional regulations of jasmonate pathway during harvesting stress, along with the use of genotypic diversity in response to such stress, can be used t
- Published
- 2014
89. Sequence and expression analyses of ethylene response factors highly expressed in latex cells from Hevea brasiliensis
- Author
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Piyatrakul, Piyanuch, Yang, Meng, Putranto, Riza Arief, Pirrello, Julien, Dessailly, Florence, Hu, Songnian, Summo, Marilyne, Theeravatanasuk, Kannikar, Leclercq, Julie, Kuswanhadi, Montoro, Pascal, Piyatrakul, Piyanuch, Yang, Meng, Putranto, Riza Arief, Pirrello, Julien, Dessailly, Florence, Hu, Songnian, Summo, Marilyne, Theeravatanasuk, Kannikar, Leclercq, Julie, Kuswanhadi, and Montoro, Pascal
- Abstract
The AP2/ERF superfamily encodes transcription factors that play a key role in plant development and responses to abiotic and biotic stress. In Hevea brasiliensis, ERF genes have been identified by RNA sequencing. This study set out to validate the number of HbERF genes, and identify ERF genes involved in the regulation of latex cell metabolism. A comprehensive Hevea transcriptome was improved using additional RNA reads from reproductive tissues. Newly assembled contigs were annotated in the Gene Ontology database and were assigned to 3 main categories. The AP2/ERF superfamily is the third most represented compared with other transcription factor families. A comparison with genomic scaffolds led to an estimation of 114 AP2/ERF genes and 1 soloist in Hevea brasiliensis. Based on a phylogenetic analysis, functions were predicted for 26 HbERF genes. A relative transcript abundance analysis was performed by real-time RT-PCR in various tissues. Transcripts of ERFs from group I and VIII were very abundant in all tissues while those of group VII were highly accumulated in latex cells. Seven of the thirty-five ERF expression marker genes were highly expressed in latex. Subcellular localization and transactivation analyses suggested that HbERF-VII candidate genes encoded functional transcription factors.
- Published
- 2014
90. Transcriptional and post-transcriptional regulation of the jasmonate signalling pathway in response to abiotic and harvesting stress in Hevea brasiliensis
- Author
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Pirrello, Julien, primary, Leclercq, Julie, additional, Dessailly, Florence, additional, Rio, Maryannick, additional, Piyatrakul, Piyanuch, additional, Kuswanhadi, Kuswanhadi, additional, Tang, Chaorong, additional, and Montoro, Pascal, additional
- Published
- 2014
- Full Text
- View/download PDF
91. Regulation of the expression of ethylene biosynthesis genes in Hevea brasiliensis shoots
- Author
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Montoro, Pascal, Rio, Maryannick, Leclercq, Julie, Oliver, Gérald, and Sabau, Xavier
- Subjects
Hevea brasiliensis ,F62 - Physiologie végétale - Croissance et développement ,Éthylène ,F30 - Génétique et amélioration des plantes - Published
- 2009
92. Biotechnology and development of rubber planting material
- Author
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Montoro, Pascal, Carron, Marc-Philippe, Lardet, Ludovic, Clément-Demange, André, Leclercq, Julie, Xiongting, Chen, and Monteuuis, Olivier
- Subjects
Hevea brasiliensis ,F02 - Multiplication végétative des plantes ,F62 - Physiologie végétale - Croissance et développement ,F30 - Génétique et amélioration des plantes - Abstract
Breeding and dissemination of planting material for rubber plantations are closely linked to propagation methods. Since the progress made by switching from multiplication by seed to propagation by budding, the development of new techniques, such as micropropagation, has been awaited. Microcuttings was developed from juvenile seedling material and rejuvenated clonal material by reiterated grafting on young seedling or somatic embryogenesis. Somatic embryogenesis procedures were developed on 18 clones worldwide but researches are still needed for large-scale propagation by this method. Both zygotic and somatic embryogenesis allows rejuvenation of plant material, which offers development of new propagation strategies. Thanks to a combination of in vitro culture methods, a whole raft of innovations will be released in the next twenty years for the propagation of higher-yielding planting material. Among those innovations, the establishment of a new generation of so-called juvenile budwood gardens is a possibility within the next five years. That transfer will be decisive for assessing the degree to which new technologies are taken on board in modern rubber growing. The involvement of growers and agro-industrialists upstream of the innovation process is decisive for the success of such an undertaking.
- Published
- 2009
93. Isolation and expression of ACC synthase in Hevea brasiliensis
- Author
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Kuswanhadi, Leclercq, Julie, Sumarmadji, Rio, Maryannick, and Montoro, Pascal
- Subjects
Hevea brasiliensis ,F62 - Physiologie végétale - Croissance et développement ,complex mixtures ,F30 - Génétique et amélioration des plantes - Abstract
Ethephon, an ethylene generator, is applied to the bark of rubber trees to increase rubber production by stimulating latex regeneration and flow. Studies on ethylene biosynthesis and its regulation were needed to gain a better understanding of the mechanisms involved in latex production and avoiding its negative effects like oxidative burst that can result in tapping panel dryness that leading to a loss of production. Ethylene biosynthesis is catalyzed by 2 main enzymes ACC synthase (ACS) andACCoxidase (ACO). Given ACO genes were well-characterized [1], ACS genes were isolated from the rubber tree and their expression studied by semi-quantitative RT-PCR in response to ethylene stimulation and wounding. A full length of HbACS1 gene was isolated. This HbACS1 encoded 380 amino acids and its genomic structure comprised 3 introns and 4 exons. The BLAST-X analysis showed that the peptide sequence of HbACS1 had a homology of 75-79% to many ACS of other species like P. euphratica, C. papaya, C. sinensis, M. domestica. While phylogenetic analysis showed that it was in the same group with P. euphratica, C. papaya, and A. thaliana. The expression of HbACS1 was induced by ethylene treatment in both leaves and bark. This induction earlier and higher in leaves than in bark. The kinetic expression showed that there was a transient effect with a pick at 4h in leaves and 8h in bark. The treatment of 1-MCP, an ethylene action inhibitor, and prior to ethylene stimulation showed that the expression of HbACS1 was under positive feed back control.Wound induced rapid expression of HbACS1 within 15 minutes after treatment to reach a maximum in one hour both in leaves and bark. The induction was higher in leaves than in bark. Hence there was a different response of plant tissues. In conclusion, these results showed that ethylene stimulation and wounding induces the expression of HbACS [1]. This was consistent with the endogenous ethylene biosynthesis measured in rubber tree [2], and the general physiological knowledge on autocatalytic ethylene production [3]. The ACS was a multigene family. Several partial sequences were isolated and the isolation of full lengthcDNAwas in progress.The prospect was to know the effect of treatment to the expression of each member and grouping them according to their expression in relation to ethylene stimulation and wounding, and understanding their role in rubber biosynthesis.
- Published
- 2009
94. Gene expression analysis for identifying candidate genes for controlling oxidative stress in rubber tree
- Author
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Leclercq, Julie, Gebelin, Virginie, Chabaud, Marion, Rio, Maryannick, Chrestin, Hervé, and Montoro, Pascal
- Subjects
Hevea brasiliensis ,F30 - Génétique et amélioration des plantes - Abstract
Hevea brasiliensis is the main source of natural rubber which is biosynthesized in latex cells. The high metabolic productivity required for latex regeneration after each tapping can be enhanced by ethylene application, which optimizes the production potential in rubber tree. However, excessive metabolism activation can lead to Tapping Panel Dryness (TPD). Expression analyses of several genes involved in the reactive oxygen species (ROS) scavenging systems have been studied in healthy trees, TPD trees and also in young budded plants. Here, we presented the expression patterns obtained by semi-quantitative and real time RT-PCR of genes involved in ascorbate-glutathione cycle. Three genotypes (PB260, PB217 and RRIM600) with contrasting metabolism have been selected at the immature stage for this study. Their expression patterns have been monitored along the day, and in response to both ethylene stimulation and wounding treatments.
- Published
- 2009
95. Variabilité de l'expression du gène gusA chez les plants transformés de première génération chez Hevea brasiliensis
- Author
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Lardet, Ludovic, Benistant, Elise, Martin, Florence, Leclercq, Julie, Oliver, Gérald, and Montoro, Pascal
- Subjects
Hevea brasiliensis ,F02 - Multiplication végétative des plantes ,F30 - Génétique et amélioration des plantes - Abstract
La production d'élastomère augmente continuellement en raison d'un développement économique croissant. Au cours de ces 30 dernières années, la part de caoutchouc naturel sur le marché de l'élastomère (caoutchouc naturel et synthétique) est passée de 30 à 43 %. L'hévéaculture est une source de devises importante pour les pays producteurs en zones tropicale et subtropicale. De plus, la production de caoutchouc naturel, issue de l'agroforesterie, contribue à la séquestration de carbone et à l'économie du carbone fossile nécessaire à la production du caoutchouc synthétique. Les besoins élevés en main d'oeuvre liés à l'hévéaculture justifient les recherches pour l'amélioration de la productivité des arbres. Dans tous les instituts de recherche sur le caoutchouc, les recherches sont focalisées sur les techniques d'exploitation et la création de clones supérieurs propagés par greffage. Etant donné le cycle biologique long inhérent aux espèces pérennes et les surfaces requises pour l'évaluation des descendances, l'acquisition de connaissance sur les déterminismes physiologique et génétique des caractères de sélection et sur les mécanismes moléculaires de la production de caoutchouc est essentielle pour l'amélioration génétique par les méthodes conventionnelles ou la transgénèse. La transformation génétique peut être utilisée pour l'introduction de gènes d'intérêt et l'acquisition rapide de nouvelles caractéristiques agronomiques. Au CIRAD, un procédé efficace de transformation génétique a été développé chez #Hevea brasiliensis#. Des lignées de cals transgéniques sont établies après coculture de cal embryogène chez le clone PB 260 et la souche EHA105 d'#Agrobacterium tumefaciens# contenant le vecteur binaire pCAMBIA2301. Les plants transformés sont régénérées à partir de ces lignées par embryogenèse somatique. Les voies d'obtention des lignées embryogènes sauvages et transgéniques seront décrites. Nous comparerons la capacité de régénération (embryons et plantules) de 5 lignées transgéniques à celle de la lignée sauvage d'origine. Puis, nous étudierons la variabilité intra et interlignée de l'expression du gène rapporteur gusA par analyse de l'activité enzymatique de la ß-Glucuronidase) sur les plants transgéniques de première génération après six mois d'acclimatation en serre. Les modes de propagation des plants transgéniques et le choix des gènes d'intérêt seront discutés. (Texte intégral)
- Published
- 2008
96. Etude de l'expression de gènes impliqués dans la régulation du stress oxydatif chez Hevea brasiliensis
- Author
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Leclercq, Julie, Gebelin, Virginie, Martin, Florence, Lardet, Ludovic, Rio, Maryannick, Chabaud, Marion, Ayar, Ayan, and Montoro, Pascal
- Subjects
F60 - Physiologie et biochimie végétales ,Hevea brasiliensis ,F30 - Génétique et amélioration des plantes - Published
- 2008
97. Comparison of GUS activity in self-rooting and budded primary trans/ormant plants in Hevea brasiliensis
- Author
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Lardet, Ludovic, Benistant, Elise, Leclercq, Julie, Martin, Florence, Oliver, Gérald, and Montoro, Pascal
- Subjects
Hevea brasiliensis ,F02 - Multiplication végétative des plantes ,fungi ,food and beverages ,F30 - Génétique et amélioration des plantes - Abstract
Successful both somatic embryogenesis and Agrobacterium tumefaciens-mediated genetic transformation systems have been developed in PB260 clone. Several transgenic callus lines and plants expressing two reporter genes (gusA and/or GFP) and CuZnSOD gene driven by the CAMV 35S promoter are respectively maintained by cryopreservation and in greenhouse. Functional genomic analysis requires homogenous population of plants for further characterization. However, the primary transformant plants are considered unstable leading to a variation in transgene expression. With regards to this epigenetic control, the variability of the beta-Dglucuronidase activity has been assessed by fluorimetric assays in primary transformant plants both self-rooting and budded state. Our preliminary results show a relative homogeneity of GUS activity in the population of self-rooting primary transformant plants obtained directly by somatic embryogenesis. After green budding, a decrease in GUS activity is recorded leading to a higher variability. The effects of budding, rootstock, rootstock/scion interaction, quality and position of the scion are discussed.
- Published
- 2008
98. Ethylene-regulated genes in Hevea brasiliensis: effect of ethylene and wounding in young budded plants of three clones with contrasting metabolisms : [Draft]
- Author
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Montoro, Pascal, Gramdi, Sael, Kuswanhadi, Lefrançois, C., Nemrod, Géraldine, Argout, Xavier, Baurens, Franc-Christophe, Leclercq, Julie, Rio, Maryannick, and Sabau, Xavier
- Subjects
clone ,Saignée ,Hybridation ,F62 - Physiologie végétale - Croissance et développement ,F30 - Génétique et amélioration des plantes ,Hevea brasiliensis ,PCR ,Métabolisme ,Expression des gènes ,Éthéphon ,Éthylène ,Tronc - Abstract
Ethephon, an ethylene generator, stimulates both latex flow and regeneration. Given ethylene triggers the expression of numerous genes in latex cells, a transcriptomics approach was taken in order to understand the molecular mechanisms underlying latex production controlled by this hormone. Two cDNA libraries were constructed using Suppression Subtractive Hybridization (SSH) technology from 4-year-old trees of clone PB 260 in their immature period without stimulation or stimulated with 2.5% ethephon stimulated. Among 1158 sequenced clones, 158 unique transcripts were identified. Putative functions were assigned by sequence analysis using BLASTX, which showed a large number of genes related to transcription and protein synthesis, unknown functions or defence proteins. A high density filter was completed with genes involved in latex metabolism such as rubber biosynthesis and ROS-scavenging protein. Macro-array analysis revealed a general differential expression between clones with a contrasting metabolism. A large proportion of genes was up-regulated for the active metabolic clone PB 260, and by contrast, a down-regulation was observed for lower metabolisms such as PB 217 or RRIM 600. Discrimination of the response to ethylene for these clones was significant for 35 genes, and 5 of them might discriminate between the responses of the 3 clones. The differential gene expression by Real Time PCR upon ethylene stimulation was confirmed for some of these candidate genes. These genes could be used as markers of expression under stress in a marker-assisted selection programme.
- Published
- 2008
99. Bases for the improvement of latex production and tolerance of exploitation stress in Hevea [Abstrac]
- Author
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Montoro, Pascal, Carron, Marc-Philippe, Clément-Demange, André, Lardet, Ludovic, and Leclercq, Julie
- Subjects
F60 - Physiologie et biochimie végétales ,Latex ,Hévéa ,H50 - Troubles divers des plantes ,F30 - Génétique et amélioration des plantes - Published
- 2007
100. Isolation and expression of ACC oxidase in Hevea brasiliensis
- Author
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Kuswanhadi, Leclercq, Julie, Sumarmadji, and Montoro, Pascal
- Subjects
Hevea brasiliensis ,F62 - Physiologie végétale - Croissance et développement ,F30 - Génétique et amélioration des plantes - Published
- 2007
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