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Burrow structures produced by various benthic animals in sediments are important components of aquatic ecosystems, allowing the circulation of interstitial water via ingress of fresh bottom water into the burrows upon feeding and intraburrow migration. Although X-ray computed tomography has been used to visualize burrow structures, it could not reveal the structures in the soft mud in Lake Kasumigaura, where evaluation of the water-circulation effect of burrows is an important issue. Here, we describe the first attempt to use magnetic resonance (MR) imaging (MRI) to visualize intact burrow structures in the soft mud sediment cores collected from a eutrophic lake. Our MRI application clarified the dynamic distribution of burrows inhabited by chironomids in the soft mud that previous studies could not visualize. By examining the relationships between the degree of chloride ion depletion in deeper layers and the burrow density calculated from the MR images, we were able to consistently explain the water-circulation effect of burrows, suggesting the higher reliability of burrow density calculated from MR images. In addition, we were able to evaluate the activity of burrows, which is difficult to achieve in sediment core experiments. We observed a smaller water-circulation effect of burrows on ammonium ions than on chloride ions, suggesting the enhancement of ammonium production or release in burrow-rich sediments.

Purpose There is increased recognition of the importance of mangroves worldwide, with efforts being made to sustainably manage these ecosystems for forestry and fishery use. Although successive monitoring of mangrove growth after planting has been conducted in some afforestation stands, measurements of soil environmental changes accompanying the plant growth have not been made in most stands. In this study, we observed the interactive relationship between the growth of mangrove, Rhizophora stylosa, and soil chemical properties at an afforestation stand on Tarawa atoll, Kiribati.Methods We first estimated root biomass in the stand. Next, we measured the concentrations of dissolved phosphorus, nitrogen, and other ions (Br−, Ca2+, K+, Na+, Cl−, and SO42−) in soil pore water, as well as the isotopic ratio of leaf carbon and nitrogen in patches of different plant ages. Results Differences in salt stress among the patches were reflected in leaf δ13C, suggesting it would be a good indicator of the physiological response of mangrove plants to salinity. Estimated root biomass was positively related with phosphate and nitrate concentrations in soil pore water, indicating the formation of a rhizosphere environment with the occurrence of root–microorganism interactions. Leaf δ15N analysis suggested that the discrimination of nitrogen isotopes during nitrification and/or uptake of NH4+ and NO3− occurs in accordance with plant growth. Conclusions Our findings revealed the changes that occur in the chemical properties of mangrove leaves and soil pore water after mangrove plantation on a yearly basis, which can improve our understanding of environmental succession during the formation of mangrove ecosystems.

Nitrogen-fixing activity has been observed in the rhizosphere of mangrove ecosystems, suggesting a close mangrove–diazotroph relationship. In regularly flooded soil, however, the pathway by which atmospheric nitrogen reaches the diazotrophs in the rhizosphere is unknown. This study provides evidence that mangrove aerial roots serve as pathways that supply nitrogen gas to the diazotrophs colonizing buried roots. A plastic chamber was attached on the exposed part of a Rhizophora stylosa Griff prop root, and 15N2 tracer gas was injected into it. The entire root, including the below-ground part, was collected for analysis of 15N labelling and nitrogenase activity. We detected 15N labelling in buried root materials 2 h after gas injection. Compared with the δ15N contents in root material from an untreated tree, the increment was >10‰ in lateral roots. The nitrogenase activity measured on the other R. stylosa roots was highest in lateral roots, matching well with the results of 15N labelling. Our results indicate that atmospheric nitrogen is taken into aerial mangrove roots through lenticels, diffuses into the buried root system and is fixed by diazotrophs. The unusual appearance of mangrove aerial roots, which has intrigued researchers for many years, could be a key to the high productivity of mangrove ecosystems.

In Lake Biwa, the largest lake in Japan, external pollutant loads have decreased since the 1980s, leading to improved water quality, such as reduction in biochemical oxygen demand (BOD) and PO43− concentrations. We examined long-term variation of bacterial production (BP) under these environmental changes from 2016–2017 in the north basin of Lake Biwa. BP was estimated by measuring the incorporation of stable isotope 15N-labeled deoxyadenosine (15N-dA) from June 2016 and December 2017 and compared with measurements from 1986 and 1997–1998. In 1986, BP was measured by following 3H-labeled thymidine (3H-TdR) incorporation and in 1997–1998 by tracking bacterial abundance in incubations and calculating specific growth rates (μ). To allow direct comparison of 15N-dA and 3H-TdR incorporation rates, we determined a conversion factor. To estimate μ in 2016–2017, we determined a factor for converting 15N-dA incorporation to cell number increase. In 2016–2017, the 15N-dA incorporation rate ranged from 0.13 to 30.7 pmol l−1 h−1 and μ ranged from 0.016 to 0.70 day−1. BP values from 3H-TdR incorporation rates in 1986 and μ in 1997–1998 were 4.6 and 2.1 times BP values in 2016–2017, respectively, confirming the decrease in BP over the past 3 decades in Lake Biwa. Water quality data showed only low decrease rates for BOD and total phosphorus concentration from the 1980s, whereas the rate of decrease for PO43− concentrations was equivalent to that of BP. BP and decomposition of organic matter are known to be strongly P-limited in Lake Biwa. Our results suggest that the decrease in BP can be explained by a reduction in readily bioavailable PO43−. Organic phosphorus can also be an important P-source for BP under conditions with very low PO43− concentrations (nM), and changes in the bioavailability of organic phosphorus might have also regulated BP dynamics.

Movement of 137Cs in the bottom sediment of a shallow lake was investigated by collecting columnar sediment cores from the entire area once a year, and also from three representative points every 3 months over 3 years from the 137Cs fallout in March 2011. The 137Cs inventory in the sediment increased remarkably near the mouths of urban rivers; however, the distribution of the 137Cs inventory did not change remarkably in most areas, and horizontally slow downstream movement of 137Cs was observed.

Although long-term ecosystem monitoring provides essential knowledge for practicing ecosystem management, analyses of the causal effects of ecological impacts from large-scale observational data are still in an early stage of development. We used causal impact analysis (CIA)-a synthetic control method that enables estimation of causal impacts from unrepeated, long-term observational data-to evaluate the causal impacts of extreme water-level drawdowns during summer on subsequent water quality. We used more than 100 years of transparency and water level monitoring data from Lake Biwa, Japan. The results of the CIA showed that the most extreme drawdown in recorded history, which occurred in 1994, had a significant positive effect on transparency (a maximum increase of 1.75 m on average over the following year) in the north basin of the lake. The extreme drawdown in 1939 was also shown to be a trigger for an increase in transparency in the north basin, whereas that in 1984 had no significant effects on transparency. In the south basin, contrary to the pattern in the north basin, the extreme drawdown had a significant negative effect on transparency shortly after the extreme drawdown. These different impacts of the extreme drawdowns were considered to be affected by the timing and magnitude of the extreme drawdowns and the depths of the basins. Our approach of inferring the causal impacts of past events on ecosystems will be helpful in implementing water-level management for ecosystem management and improving water quality in lakes.

Background Freshwater ecosystems are inhabited by members of cosmopolitan bacterioplankton lineages despite the disconnected nature of these habitats. The lineages are delineated based on > 97% 16S rRNA gene sequence similarity, but their intra-lineage microdiversity and phylogeography, which are key to understanding the eco-evolutional processes behind their ubiquity, remain unresolved. Here, we applied long-read amplicon sequencing targeting nearly full-length 16S rRNA genes and the adjacent ribosomal internal transcribed spacer sequences to reveal the intra-lineage diversities of pelagic bacterioplankton assemblages in 11 deep freshwater lakes in Japan and Europe. Results Our single nucleotide-resolved analysis, which was validated using shotgun metagenomic sequencing, uncovered 7–101 amplicon sequence variants for each of the 11 predominant bacterial lineages and demonstrated sympatric, allopatric, and temporal microdiversities that could not be resolved through conventional approaches. Clusters of samples with similar intra-lineage population compositions were identified, which consistently supported genetic isolation between Japan and Europe. At a regional scale (up to hundreds of kilometers), dispersal between lakes was unlikely to be a limiting factor, and environmental factors or genetic drift were potential determinants of population composition. The extent of microdiversification varied among lineages, suggesting that highly diversified lineages (e.g., Iluma-A2 and acI-A1) achieve their ubiquity by containing a consortium of genotypes specific to each habitat, while less diversified lineages (e.g., CL500-11) may be ubiquitous due to a small number of widespread genotypes. The lowest extent of intra-lineage diversification was observed among the dominant hypolimnion-specific lineage (CL500-11), suggesting that their dispersal among lakes is not limited despite the hypolimnion being a more isolated habitat than the epilimnion. Conclusions Our novel approach complemented the limited resolution of short-read amplicon sequencing and limited sensitivity of the metagenome assembly-based approach, and highlighted the complex ecological processes underlying the ubiquity of freshwater bacterioplankton lineages. To fully exploit the performance of the method, its relatively low read throughput is the major bottleneck to be overcome in the future. Video abstract. Supplementary Information The online version contains supplementary material available at 10.1186/s40168-020-00974-y.

In river environments affected by the Fukushima Daiichi Nuclear Power Plant accident, dams can suppress the release of soils containing radiocesium from forested areas. However, they also act as a source of bioavailable radiocesium (137Cs) that is stored in and desorbed from lake sediments. This study investigated the migration and accumulation of particulate 137Cs in the Matsugabo Dam Lake, which is located about 50 km from the nuclear power plant. We used continuous observations of water turbidity and flow rate at two sites: the inflow point into the lake from a small forested watershed and the dam discharge point. The results showed that >85% of the particulate 137Cs that flowed into the lake had been stored from 2014 to 2017. In particular, a heavy rainfall event in September 2015 was estimated to contribute 41% of the particulate 137Cs that entered the lake during the period from 2011 to 2015. Through investigation of undisturbed cylindrical sediments collected from the lake inlet, central area, and near the embankment, the maximum sedimentary 137Cs concentration was observed near the embankment where the sediment had been undisturbed because of the water depth (>30 m), and relatively fine-grained mineral particles with high concentrations of 137Cs were deposited. The surface sediment contained >1 kBq kg−1 of 137Cs and this layer became thicker after 2015, suggesting that heavy rainfall in September 2015 significantly increased 137Cs storage in the lake. The increase in 137Cs storage in November 2015 compared with the initial 137Cs fallout in 2011 was roughly estimated at 6.4 × 1010 Bq, which was less than the amount of 137Cs deposited on the lake bottom by the initial fallout (1.06 × 1011 Bq), and equivalent to only 1.2% of the total 137Cs deposited in the Matsugabo Dam watershed.

The natural abundance of stable isotopes is a powerful tool for evaluating biological reactions and process conditions. However, there are few stable isotope studies on the wastewater treatment process. This study carried out the first investigation on variations in natural abundance of carbon and nitrogen stable isotope ratios (δ13C and δ15N) of activated sludge in four types of advanced treatment process (extended aeration activated sludge (EAAS), aerobic-anoxic-aerobic (A2O), recycled nitrification-denitrification (RND), and modified Bardenpho (MB)) at a municipal wastewater treatment plant. The δ13C and δ15N values of influent suspended solids settled in the primary sedimentation tank (i.e., primary sludge) ranged from -25.4‰ to -24.6‰ and 0.5‰-2.9‰, respectively, during monitoring periods. The δ13C values of the activated sludge were -24.6‰ to -23.6‰ (EAAS), -25.4‰ to -24.3‰ (A2O), -25.7‰ to -24.9‰ (RND), and -25.7‰ to -24.3‰ (MB). The δ13C values of the activated sludge were similar to those of influent suspended solids. However, the δ13C values of activated sludge in EAAS was significantly higher than in A2O, RND, and MB. Meanwhile, the δ15N values of activated sludge were obviously higher than influent suspended solids; 5.8‰-7.5‰ (EAAS), 6.6‰-8.1‰ (A2O), 5.5‰-7.5‰ (RND), and 5.3‰-7.6‰ (MB). Changes in δ13C and δ15N values of the activated sludge within the treatment system were also found. These findings indicate that changes in δ13C and δ15N values of the activated sludge rely on important function for biological wastewater treatment such as nitrification, denitrification, and methane oxidation through wastewater treatment over time.

Stable isotope ratios of nitrate are a powerful tool to evaluate aquatic environment stress from treated and untreated sewage. However, there is generally a lack of knowledge on the change in stable isotope ratios within wastewater treatment plants. We investigated nitrogen and oxygen stable isotope ratios (δ

Remobilization of radiocesium from anoxic sediments can be an important mechanism responsible for long-term contaminations of lakes. However, it is unclear whether such remobilization occurs in shallow lakes, where concentrations of dissolved oxygen in the hypolimnion (bottom DO) change temporally in response to meteorological conditions, and whether remobilized radiocesium influences the activity in fish. We examined the seasonal dynamics of the activities of dissolved

Lake eutrophication is a pervasive problem globally, particularly serious in agricultural and densely populated areas. Whenever nutrients nitrogen and phosphorus do not limit phytoplankton growth directly, high growth rates will rapidly lead to biomass increases causing self-shading and light-limitation, and eventually CO

Bacterial production has been often estimated from DNA synthesis rates by using tritium-labeled thymidine. Some bacteria species cannot incorporate extracellular thymidine into their DNA, suggesting their biomass production might be overlooked when using the conventional method. In the present study, to evaluate appropriateness of deoxyribonucleosides for evaluating bacterial production of natural bacterial communities from the viewpoint of DNA synthesis, incorporation rates of four deoxyribonucleosides (thymidine, deoxyadenosine, deoxyguanosine and deoxycytidine) labeled by nitrogen stable isotope (15N) into bacterial DNA were examined in both ocean (Sagami Bay) and freshwater (Lake Kasumigaura) ecosystems in July 2015 and January 2016. In most stations in Sagami Bay and Lake Kasumigaura, we found that incorporation rates of deoxyguanosine were the highest among those of the four deoxyribonucleosides, and the incorporation rate of deoxyguanosine was approximately 2.5 times higher than that of thymidine. Whereas, incorporation rates of deoxyadenosine and deoxycytidine were 0.9 and 0.2 times higher than that of thymidine. These results clearly suggest that the numbers of bacterial species which can incorporate exogenous deoxyguanosine into their DNA are relatively greater as compared to the other deoxyribonucleosides, and measurement of bacterial production using deoxyguanosine more likely reflects larger numbers of bacterial species productions.

Carbon and nitrogen stable isotope ratios (δ13C and δ15N) were determined in activated sludge, which was exposed to endogenous conditions for 36 days and contained a wide diversity of organisms across several trophic levels. The aim of this study was to elucidate the fluctuation of δ13C and δ15N through trophic transfer in the microbial consortia. The sludge was evaluated in view of sludge mass, bacterial community, higher trophic organisms, sludge δ13C and δ15N, and δ15N and δ18O of nitrate. The results show that the activated sludge became more enriched with 15N as degradation proceeded. Eventually, the mixed liquor volatile suspended solid concentrations in the activated sludge decreased from 1610 to 710 mg/L and the δ15N of the sludge increased from 8.3‰ to 10.8‰. In contrast, the δ13C values of the sludge were stable. Microscope observations confirmed that consumers such as Rotifera, Tardigrada and Annelida (Aelosoma sp.) were present in the activated sludge for the entire operational period. The abundance of those organisms drastically changed during the operational periods, and the diversity in bacterial community also changed, resulting in community succession. Changes in biotic community, reduction in sludge mass, and increase in δ15N of the sludge occurred during the sludge degradation processes. This implies that the sludge degradation was partly caused by the trophic conversion of the sludge-derived nitrogen in the food web. The δ15N of the sludge can be used as an indicator of the sludge degradation through trophic transfer in wastewater treatment reactors. These findings provide new insights into understanding trophic transfer during microbial community succession and the effects of the feeding process on sludge degradation.

To explore the mechanisms in the deposition and release of phosphorus (P) in the sediment of a shallow eutrophic lake using preserved samples, we investigated the vertical and temporal changes in P, manganese (Mn), sulfur (S), iron (Fe), aluminum (Al), calcium (Ca), and magnesium (Mg) in the sediment samples and the phosphate in the sediment pore water samples over a period of 6 years. The upper 15 cm of sediment from Lake Kasumigaura in Japan was collected monthly from 2003 to 2008 from the center of the lake. Sediment cores were divided into seven depth segments and were acid-digested for an elemental analysis via inductively coupled plasma atomic emission spectroscopy. Phosphate concentrations of the sediment pore water were determined using the molybdenum blue method. A multiple regression analysis was conducted by setting the P content as the response variable and Mn, S, Fe, Al, Ca, and Mg as explanatory variables. The results of the multiple regression analysis demonstrated that P co-precipitates with Fe and Al oxides and accumulates on the sediment surface. The vertical distributions of Mn and S suggest that Mn reduction occurs within the 0–1-cm-depth layer of the sediment and that iron sulfide is actively formed in the 6–10-cm-depth layer of the sediment. These findings imply that the layer in which ferric oxides are reduced to ferrous ions is present near the 1–6-cm-depth layer of the sediment. This layer corresponds to the layer in which the maximum phosphate concentration of the sediment pore water often occurred (the 2–6-cm-depth layer). These results indicate that vertical distributions of mineral elements are useful for assessing P dynamics in sediments. The lake sediments record the dynamics of P in the sediment. Our analytical approach using long-term observation data demonstrated that the accumulation and release of P associated with a change in the redox state can be assessed based on the vertical distributions of mineral elements in the lake sediments.

Appropriate management of macrophyte biomass via harvesting is crucial for maintaining eutrophic inland waters. However, information on the effects of macrophyte harvesting on the quality and bottom environment of these waters is limited. For our project on Lake Biwa in Japan, we focused on the pore water quality of the surface sediment as a reliable tool for estimating the effects of macrophyte harvesting. We compared the release of heavy metals and nutrients from the sediment based on the pore water quality of harvesting and non-harvesting sites. Our results suggested that macrophyte harvesting affected the water quality poorly in terms of sediment resuspension, but effectively reduced the amount of macrophyte litter on the lake bottom. Different methods of macrophyte harvesting are discussed, and cutting away only the upper section of macrophytes to avoid sediment resuspension instead of pulling up the macrophytes by the root was found to be the ideal harvesting method. In addition, sustainable harvesting to reduce the macrophyte litter on the lake bottom would be required to conserve the lake environment.

The population sizes of Anopheles gambiae Giles (Diptera: Culicidae) and Anopheles arabiensis Patton (Diptera: Culicidae) increase dramatically with the onset of the rainy season in sub-Saharan Africa, but the ecological mechanisms underlying the increases are not well understood. As a first step toward to understand, we investigated the proliferation of algae, the major food of mosquito larvae, in artificial fresh water bodies exposed to sunlight for a short period, and old water bodies exposed to sunlight for a long period, and the effects thereof on the development of these anopheline larvae. We found that an epizoic green algal species of the genus Rhopalosolen (Chlorophyta: Chlorophyceae) proliferated immediately after water freshly taken from a spring was placed in sunlight. This alga proliferated only briefly (for ~10 d) even if the water was repeatedly exposed to sunlight. However, various algal species were observed in water that remained under sunlight for 40 d or longer (i.e., in old water bodies). The growth performance of larvae was higher in sunlight-exposed (alga-rich) water than in shade-stored (alga-poor) water. Stable isotope analysis suggested that these two anopheline species fed on Rhopalosolen algae in fresh water bodies but hardly at all on other algae occurring in the old water bodies. We concluded that freshly formed ground water pools facilitate high production of anopheline species because of the proliferation of Rhopalosolen algae therein, and the increase in the number of such pools in the rainy season, followed by rapid increases in A. gambiae and A. arabiensis numbers.