178 results on '"Knebel J"'
Search Results
52. Thermalhydraulics of passive decay heat removal systems (POOLTHY)
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Tenchine, D., Berthoux, M., Knebel, J. U., Jackson, J. D., An, P., Naviglio, Antonio, and Caruso, Gianfranco
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PASSIVE SYSTEMS ,RESIDUAL HEAT REMOVAL SYSTEM ,POOL BOILING - Published
- 2000
53. Prävalidierungsstudie zur Prüfung der toxischen Wirkung von inhalativ wirksamen Stoffen (Gase). Abschlußbericht Projekt F 1835-A85
- Author
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Linsel, G., Bauer, Mario, Berger-Preiß, E., Gräbsch, Carolin, Kock, H., Liebsch, M., Pirow, R., Ritter, D., Smirnova, L., Knebel, J., Linsel, G., Bauer, Mario, Berger-Preiß, E., Gräbsch, Carolin, Kock, H., Liebsch, M., Pirow, R., Ritter, D., Smirnova, L., and Knebel, J.
- Abstract
The aim of the study was the prevalidation of an inhalation toxicity test for gases using human lung cells exposed on the air liquid interface (ALI). Four test laboratories participated in the study: Fraunhofer Institut für Toxikologie und Experimentelle Medizin (ITEM Hanover, (co-ordination)), Helmholtz-Zentrum für Umweltforschung (UFZ Leipzig), Bundesinstitut für Risikobewertung (BfR/ZEBET Berlin) and Bundesanstalt für Arbeitsschutz und Arbeitsmedizin (BAuA Berlin). Four gases, nitrogen dioxide (NO2), sulfur dioxide (SO2), formaldehyde, ozone as well as synthetic air for negative control were investigated. The human alveolar cell line A549, grown on microporous membranes was exposed on the air liquid interface to different concentrations of test gases and synthetic air. The test design comprised one hour gas exposure followed by direct determination of cytotoxicity (electrical current exclusion method, CASY, Innovatis) and genotoxicity (Comet assay). Analyses of dose-response relationships for cytotoxicity showed a good repeatability within and reproducibility between the laboratories for all four gases. Comparison of the derived EC50 values with published LC50 values for mice and rats revealed a tight quantitative relationship between in vitro cytotoxicity and in vivo lethality. Genotoxic endpoints demonstrated clear and reproducible dose-response relationships for SO2 and formaldehyde, indicating DNA strand-breaks (SO2) and DNAprotein crosslinks (formaldehyde). No such dose-dependent effects could be observed for NO2 and ozone by means of logistic regression analysis. The multivariate analysis of variance showed subtle hints for genotoxic effects of both gases. Before entering a formal validation stage, extended prevalidation will be necessary to establish a set of data sufficiently large to allow for optimization of the prediction model.
- Published
- 2011
54. THU-019 - Clinical Features and Outcomes According to the Etiology of Cirrhosis: A 20-Year Follow-Up Study in a Monocentric Cohort
- Author
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Marot, A., Henrion, J., de Vos, M., Knebel, J.-F., Doerig, C., and Deltenre, P.
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- 2016
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55. Technische Sitzungen der Sektion 2 (Thermo- und Fluiddynamik) der Jahrestagung Kerntechnik 1999
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Knebel, J., Grötzbach, G., Lischke, W., Rohde, U., and Schaffrath, A.
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Stabilitätsuntersuchungen ,Jahrestagung Kerntechnik ,3D Phänomene ,Thermo- und Fluiddynamik ,WWER-Reaktoren - Abstract
Auf der Jahrestagung Kerntechnik 1999 in Karlsruhe wurden in der Sektion 2 vier technische Sitzungen zu den Themenschwerpunkten: Stabilitätsuntersuchungen in Zweiphasenströmungen, DWR Integralexperimente, Experimente und Code-Validierung für WWER-Reaktoren, 3D Phänomene, Methoden und Rechnungen sowie 1 Postersession durchgeführt. Die einzelnen Beiträge werden in dem vorliegenden Artikel zusammengefaßt.
- Published
- 1999
56. Avaliacao de fungicidas quimicos e biologico para o tratamento de sementes de soja na regiao Sul do Brasil, safra 97/98
- Author
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HENNING, A. A., VAL, W. M. C., COSTA N. P., KRZYZANOWSKI, F. C., FRANÇA-NETO, J. B., GARRIDO, R. B. O., COSTAMILAN, L. M., BONATO, E. R., BRANCAO, N., MENON, J. C. M., DAL PIVA, C. A., KNEBEL, J., ADEMIR ASSIS HENNING, CNPSO, WARNEY MAURO DA COSTA VAL, CNPSo, NILTON PEREIRA DA COSTA, CNPSo, FRANCISCO CARLOS KRZYZANOWSKI, CNPSO, JOSE DE BARROS FRANCA NETO, CNPSO, and EMIDIO RIZZO BENATO, CNPSo.
- Subjects
Brasil ,chemical control ,Controle Químico ,Soja ,biological control ,Controle Biológico ,Soybean ,Semente ,Regiao Sul ,Brazil ,Tratamento ,seed treatment - Abstract
O tratamento de sementes de soja com fungicida, alem de controlar patogenos importantes que podem ser transmitidos pela semente, e uma pratica eficientes para garantir o estabelecimento de populacoes adequadas de plantas, especialmente quando ocorrem veranicos apos a semeadura. O objetivo deste trabalho foi avaliar os efeitos de fungicidas (novos ou ja recomendados) e suas misturas na emergencia da soja, na Regiao Sul do Brasil. Os experimentos em rede em rede foram instalados em: Pelotas e Passo Fundo (RS); Abelardo Luz e Mafra (SC); e Londrina, Cascavel, Ponta Grossa e Bandeirantes (PR). Sementes do cultivar BR-16 foram tratadas com fungicidas e misturas e semeadas em parcelas de quatro fileiras de cinco metros de comprimento com 100 sementes por fileira espacadas de 0,5m. O delineamento experimental foi blocos casualizadoscom quatro repeticoes. Em Cascavel, PR, alem dos 16 tratamentos do ensaio em rede, foram adicionados tratamentos com os fungicidas thiabendazole (Tecto 100), benomyl (Benlate 500) e carbendazin (Derosal 500 SC) para dirimir a duvida existente na regiao de que os fungicidas benzimidazois, quando empregados sozinhos, prejudicam a emergencia da soja. A analise da variancia foi efetuada pelo sistema SAS, PROC, GLM e as medias separadas pelo teste de Tukey, a 5% de probabilidade. Devido as boas condicoes de umidade do solo apos a semadura, maioria das localidades, respostas significativas na emergencia de plantulas foram observadas apenas em Bandeirantes e Passo Fundo; nesta ultima, houve resposta significativa tambem no rendimento de graos. No experimento conduzido em Cascavel, os tratamentos com os fungicidas benzimidazois, empregados isoladamente, apresentaram emergencias superiores a 80%, nao diferindo das melhores misturas de fungicidas. Todavia, nao foram observadas respostas significativas aos diversos tratamentos, devido as boas condicoes de umidade do solo por ocasiao da semeadura. Made available in DSpace on 2015-06-09T05:50:47Z (GMT). No. of bitstreams: 1 id171990001.pdf: 488781 bytes, checksum: 842ecdf2adc90ac3bfb9aa5f1d53976c (MD5) Previous issue date: 2000-03-08 Resumos apresentado no XI Congresso Brasileiro de Sementes.
- Published
- 1999
57. MRI safety of a programmable shunt sssistant (proSA) at 3 and 7 Tesla
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Mirzayan, MJ, Knebel, J, Klinge, PM, Samii, M, Goetz, F, Miethke, C, Krauss, JK, Mirzayan, MJ, Knebel, J, Klinge, PM, Samii, M, Goetz, F, Miethke, C, and Krauss, JK
- Published
- 2010
58. MEMESS V5. Das Modular Erweiterbare Meßwerte Erfassungs- und Steuerungssystem
- Author
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Lefhalm, C. H., Daubner, M., and Knebel, J. U.
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ddc:620 ,Engineering & allied operations - Published
- 1998
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59. Air/liquid interface (ALI) technique for toxicity testing of gaseous compounds on human lung cells
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Troeller, S., primary, Linsel, G., additional, Huettig, N., additional, Bauer, M., additional, Graebsch, C., additional, Smirnova, L., additional, Pirow, R., additional, Liebsch, M., additional, Berger-Preiß, E., additional, Kock, H., additional, Oertel, A., additional, Ritter, D., additional, and Knebel, J., additional
- Published
- 2013
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60. A female patient with cerebral ischemia after percutaneous kyphoplasty due to a paradoxical embolism via a persistent foramen ovale (PFO) - is a perioperative transesophageal echocardiography (TOE) helpful in the context of cardiac risk stratification?
- Author
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Lehner, C., primary, Dieterich, F., additional, Matthes, T., additional, Reisig, F., additional, Knebel, J., additional, and Büttner, J., additional
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- 2012
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61. Hemangiopericytoma in a cat: a case report
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Blutke, A., primary, Knebel, J., additional, Brühschwein, A., additional, Breuer, W., additional, and Hermanns, W., additional
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- 2012
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62. Toxicological characterization of inhalable substances and aerosols in vitro: Enhancement of experimental methods by in situ fluorescence analysis of the cellular status during exposure
- Author
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Ritter, D., primary and Knebel, J., additional
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- 2011
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63. Kalibrierung einer Miniatur-Permanentmagnet-Potentialsonde zur Geschwindigkeits- und Temperaturmessung in Natrium
- Author
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Knebel, J. U. and Krebs, L.
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ddc:620 ,Engineering & allied operations - Published
- 1993
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64. Experimental investigation of a confined heated sodium jet in a co-flow
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KNEBEL, J. U., primary, KREBS, L., additional, MÜLLER, U., additional, and AXCELL, B. P., additional
- Published
- 1998
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65. Development of an in vitro system for studying effects of native and photochemically transformed gaseous compounds using an air/liquid culture technique
- Author
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Knebel, J, primary
- Published
- 1998
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66. PAH Metabolism in Cultured Mammalian Lung Epithelial Cells
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Emura, M., primary, Jacob, J., additional, Grimmer, G., additional, Knebel, J. W., additional, Raab, G., additional, and Mohr, U., additional
- Published
- 1996
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67. Langzeitergebnis nach chirurgischer Behandlung der Ruptur des vorderen Kreuzbands bei kleinen Hunden
- Author
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Berger, B., Knebel, J., Steigmeier-Raith, S., Reese, S., and Meyer-Lindenberg, A.
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- 2015
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68. Ätiologie, Pathogenese, Diagnostik und Therapie der Ruptur des kranialen Kreuzbandes beim Hund
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Knebel, J. and Meyer-Lindenberg, A.
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- 2014
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69. Use of cultivated osteoprogenitor cells to increase bone formation in segmental mandibular defects: an experimental pilot study in sheep
- Author
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Schliephake, H., Knebel, J. W., Aufderheide, M., and Tauscher, M.
- Abstract
Abstract. The hypothesis of the present experimental pilot study was that autogeneous cultivated osteoprogenitor cells in porous calcium phosphate scaffolds can increase bone formation in segmental defects of the mandible. The autogenous osteoprogenitor cells of eight sheep were cultivated from bone biopsies from the iliac crest and seeded into cylindrical scaffolds of pyrolized bovine bone of an overall length of 35 mm and 13 mm in diameter. Segmental defects of 35 mm length were created unilaterally in the mandibles of the animals. Reconstruction was performed using cylinders with cultivated osteoprogenitor cells in four animals and empty scaffolds in the remaining four sheep, which served as controls. After 5 months, the mandibles were retrieved and the reconstructed areas were analyzed by qualitative and quantitative histology in serial undecalcified thick-section specimens. There was significantly more bone formation in the group that had received scaffolds with cultivated bone cells (P=0.028). Bone formation was present in 34.4% of the evaluated cross-sectional units in the seeded scaffolds, while it was found in 10.4% in the control group. Although the spatial distribution of bone formation was significantly different across the scaffold in both groups, osteoprogenitor cells appeared to have increased bone formation, particularly in the centre of the defect when compared to the control group. It is concluded that the repair of segmental defects of the mandible can be enhanced by the transplantation of autogenous osteoprogenitor cells in a porous calcium phosphate scaffold. Copyright 2001 International Association of Oral and Maxillofacial Surgeons
- Published
- 2001
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70. Kinetics of gas phase oxygen control system (OCS) for stagnant and flowing Pb-Bi Systems
- Author
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Lefhalm, C. H., Knebel, J. U., and Mack, K. J.
- Published
- 2001
- Full Text
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71. Design and corrosion study of a closed spallation target module of an accelerator-driven system (ADS)
- Author
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Knebel, J. U., Cheng, X., Lefhalm, C. H., Muller, G., Schumacher, G., Konys, J., and Glasbrenner, H.
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- 2000
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72. The TRADE experiment and progress
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Imel, G., Naberejnev, D., Palmiotti, G., Granget, G., Mandard, L., Jammes, Ch, Andriamonje, S., Steckmeyer, J. C., Kadi, Y., Carta, M., Rosa, R., Monti, S., Burgio, N., Alfonso Santagata, Broeders, C., Knebel, J., Salvatores, M., Imel, G., Naberejnev, D., Palmiotti, G., Granget, G., Mandard, L., Jammes, Ch., Andriamonje, S., Steckmeyer, J. C., Kadi, Y., Carta, M., Rosa, R., Monti, S., Burgio, N., Santagata, A., Broeders, C., Knebel, J., and Salvatores, M.
- Abstract
TRADE (TRIGA Reactor Accelerator Driven Experiment) will be the demonstration of the coupling of a real spallation source with a sub-critical reactor. TRADE and its motivation are summarised. The experimental work plan of the campaign is presented. The first experiments with the accelerator are scheduled around 2006 or 2007. Some specifics of the TRIGA core are given and particularly about fuel burn-up. Core calculation results with Monte-Carlo and deterministic codes and rods worth obtained during the short campaign of fall 2002 are presented. The comparison between calculated results and this first experiment gives confidence for the follow-up work.
73. TRADE: A full experimental validation of the ADS concept in a European perspective
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Rubbia, C., Monti, S., Salvatores, M., D Angelo, A., Bignan, G., Nunzio Burgio, Cacuci, D., Cahalan, J., Carta, M., Fougeras, P., Granget, G., Imel, G., Jammes, C., Kadi, Y., Knebel, J., Maloy, S., Naberejnev, D. G., Philibert, H., Ravetto, P., Rubbia, C., Monti, S., Salvatores, M., D'Angelo, A., Bignan, G., Burgio, N., Cacuci, D., Cahalan, J., Carta, M., Fougeras, P., Granget, G., Imel, G., Jammes, C., Kadi, Y., Knebel, J., Maloy, S., Naberejnev, D. G., Philibert, H., and Ravetto, P.
- Abstract
The three levels involved in the experimental validation of an Accelerator Driven System (ADS) are discussed. TRADE is referenced as the most important step toward the ADS demonstration. The types of measurements required to perform in TRADE are also discussed. The TRADE experiments are preferred as they have the ability of incorporating the feedback effects into the dynamics measurements in ADS and to address ADS operational, safety and licensing issues. The categories of the types of experiments performed are: start-up and shut down procedures, operation and monitoring of the system at steady state, monitoring of the time evolution of the reactivity, and practical coupling of an accelerator, a spallation target and the subcritical core.
74. Overview on corrosion and thermal-hydraulic issues of Liquid Metal coolants
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Knebel, J. U., Fazio, C., Konys, J., Müller, G., and Robert Stieglitz
75. [Aetiology, pathogenesis, diagnostics and therapy of cranial cruciate ligament rupture in dogs]
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Knebel J and Andrea Meyer-Lindenberg
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Arthroscopy ,Dogs ,Anterior Cruciate Ligament Injuries ,Animals ,Dog Diseases ,Joint Diseases ,Hindlimb - Abstract
Cranial cruciate ligament rupture is the most common cause of hindlimb disease in dogs and is often associated with an additional lesion of the medial meniscus. The exact aetiopathogenesis of this condition in dogs is unknown. Normally, the degeneration of the ligament first leads to a partial rupture which progresses to a complete rupture following an unspectacular trauma. The positive cranial drawer test confirms the cranial cruciate ligament rupture, however, in some cases, particularly in partial ligament lesions, the diagnosis is not obvious. Therefore, the reexamination of the sedated patient is recommended to generally increase the sensitivity of clinical tests. Magnetic resonance imaging and stifle joint arthroscopy are useful methods to evaluate the cruciate ligaments in indistinct cases or to assess the joint for secondary changes. The therapy of cranial cruciate ligament ruptures can be divided into extra- and intracapsular as well as tibial osteotomies. The principle of the different tibial osteotomies is the muscular compensation of stifle joint instability. The results are successful but not uncritical. This article presents a short review on the substantial problems associated with cranial cruciate ligament rupture in dogs. A more detailed description of secondary problems and complications would exceed the scope of this article and should be considered in another study.
76. International harmonization of terms in environmental chemicals control law
- Author
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UPPENBRINK, M, primary and KNEBEL, J, additional
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- 1983
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77. ChemInform Abstract: Cyclooctaselenadiazole: Synthesis, Decomposition Pathway, and Reaction with (η5‐C5H5)Co(L)2 (L = C2H4, PPh3). Crystal and Molecular Structure of ((η5‐C5H5)Co)2 (μ2‐η3,η2‐C8H6Se).
- Author
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KNEBEL, J., primary, MORLEY, C. P., additional, WILKE, G., additional, KRUEGER, C. +, additional, and WALLIS, J. M., additional
- Published
- 1988
- Full Text
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78. Turbulent Convection in Buoyant Sodium Jets
- Author
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Knebel, J. U., Krebs, L., and Mueller, U.
- Published
- 1994
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79. Calibration of a Miniature Permanent Magnet Flowmeter Probe and Its Application to Velocity Measurements in Liquid Sodium
- Author
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Knebel, J. U. and Krebs, L.
- Published
- 1994
- Full Text
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80. Comparison of biological effects of different polycyclic aromatic hydrocarbons in lung cells of hamster and rat in vitro
- Author
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Knebel, J. W., Aufderheide, M., and Emura, M.
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- 1994
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81. Assessing the Pharmacotherapy and Clinical Outcomes After Deep Brain Stimulation for Treatment-Refractory Obsessive-Compulsive Disorder: A Case-Cohort Study.
- Author
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Knebel J, McClure RK, and Kennedy MLH
- Abstract
Background: In the search for effective treatments for refractive obsessive-compulsive disorder (OCD), deep brain stimulation (DBS) serves as an alternative option for those with minimal response to pharmacotherapy. The rarity of reports regarding DBS use for OCD is attributed to the invasive nature of the procedure: placement of electrodes within targeted areas of the brain to provide neuromodulation. This treatment of last resort may decrease functional impairment and pharmacologic complications for a debilitating mental illness. This study compares the pharmacotherapy utilization and treatment outcomes of five treatment-refractory OCD patients after the placement of DBS with those of a matched cohort. Methods: This retrospective, single-center, case-cohort study reviewed the electronic medical records of five subjects treated with DBS for treatment-refractory OCD and compared them to a similar treatment-refractory cohort whose OCD was treated without the use of DBS. Control subjects were matched by age, sex, years since diagnosis, number of previous medication class trials, and additional clinical factors. Inclusion criteria were defined as those that are at least eighteen years of age, assigned a primary diagnosis of OCD per the ICD-10 classification, and received DBS treatment for refractory OCD. Exclusion criteria included comorbid psychotic disorders, unstable neurological or coagulation disorder(s), and/or an eating disorder diagnosis. The primary endpoint was the change in the number of psychotropic medications two years after implantation for the DBS cohort and two years after psychiatric decompensation for the comparator cohort. Secondary endpoints included: Y-BOCS (the Yale-Brown Obsessive-Compulsive Scale) changes over time, duration quantity of psychotropic medication classes prescribed, and additional symptomology scale changes. Results: Patients receiving DBS were more likely to be on fewer medications and trialed fewer medications after treatment. One out of the five patients was found to be a responder in Y-BOCS scoring after DBS treatment. A reduction in anxiety and depression symptoms was also seen in the HAM-A and HAM-D scales for those that received DBS. Conclusions : A reduction in psychiatric medications trialed during therapy was observed, as well as varying reductions in OCD, anxiety, and depression symptomology following DBS. Results from this study indicate that DBS implantation may contribute to a reduction in polypharmacy while displaying DBS's potential impact on comorbid anxiety and depression symptoms. Given that the small sample size limits generalizability, additional prospective, randomized trials comparing the efficacy of DBS for OCD-specific symptomology and its overall impact on pharmacotherapy are needed in order to further establish the role of DBS as an accepted treatment option for OCD.
- Published
- 2024
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82. Low-Field Magnetic Resonance Imaging for the Detection of Medial Meniscal Lesions in Cranial Cruciate-Deficient Stifle Joints in Dogs.
- Author
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Knebel J, Wilke SK, Neumann S, Klatt AL, Schenk HC, and Konar M
- Abstract
Background: The aim of this study was to substantiate the ability of noninvasive low-field magnetic resonance imaging (lfMRI) to accurately depict meniscal lesions, thereby establishing lfMRI as a viable option for the diagnosis of meniscal pathology., Study Design: This was a prospective, controlled study., Materials and Methods: In each of 57 stifle joints, 5 predefined lfMRI sequences using a 0.25 T lfMRI were used. The scans were evaluated by an experienced surgeon (DECVS) and through external assessment by a radiologist (DECVDI). The patients were divided into two groups depending on their meniscal status after lfMRI. Dogs (Group 1; n = 33) without lfMRI evidence of medial meniscal pathology underwent TPLO, whereas concurrent craniomedial mini-arthrotomy was performed in patients with suspected meniscal lesions (Group 2; n = 24). Gait assessment was performed 6 weeks later and 6 months postoperatively., Results: Cohen's kappa value of 0.8571 corresponds to a high level of agreement between the observers. A significant correlation was found between preoperative lameness severity and intraoperative meniscal damage ( p < 0.04). The results showed a highly significant correlation between meniscal injuries on MRI and intraoperative findings ( p < 0.0001)., Conclusions: LfMRI appears to be a noninvasive, reliable imaging tool for the detection of medial meniscal lesions in cranial cruciate-deficient stifle joints, aiming to avoid (minimally) invasive diagnostics in healthy menisci.
- Published
- 2024
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83. Prescribing patterns in patients with obsessive-compulsive disorder: Retrospective, single-center study.
- Author
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Knebel J and Kennedy MLH
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- Humans, Retrospective Studies, Male, Female, Adult, Middle Aged, Psychotropic Drugs therapeutic use, Young Adult, Antipsychotic Agents therapeutic use, Selective Serotonin Reuptake Inhibitors therapeutic use, United States, Obsessive-Compulsive Disorder drug therapy, Practice Patterns, Physicians' statistics & numerical data
- Abstract
Introduction: Obsessive-compulsive disorder (OCD) is marked by a high rate of treatment resistance. Patients are often left trialing medications within multiple drug classes with little response, causing heterogeneity to emerge in prescribing patterns. This analysis seeks to investigate the selection and dosing of the pharmacotherapy utilized, to portray an overview of prescribing trends in the United States., Methods: This retrospective, single center, review of electronic medical records investigated the pharmacotherapy utilization of patients with a primary diagnosis of OCD. Two hundred and ninety-five patients who received OCD treatment at an urban, academic medical center were included in the study. Patients were included in the review if they were at least eighteen years of age and were assigned a diagnosis of OCD according to DSM-5 criteria., Results: Psychotropic pharmacotherapy was integrated into the care of 93% of patients. Selective serotonin reuptake inhibitors were the most utilized medication class at 85% followed by benzodiazepines (47%) and second-generation antipsychotics (37%). Tricyclic antidepressants and first-generation antipsychotics were the two medication classes utilized the least at 13% and 2% respectively. Additionally, mood stabilizers and serotonin-norepinephrine reuptake inhibitors were utilized at rates of 8% and 16%, respectively., Conclusions: Evidence-based treatment guidelines are being followed with varying augmentation strategies widely prevalent, thus displaying the heterogeneity in treating OCD. A high rate of benzodiazepine utilization highlights a practice trend with potential ties to clinical factors, such as the latency to treatment effect of other first-line pharmacotherapies. Future prospective studies are required to determine the cultural, pharmacoeconomic and pharmacogenomic factors that contribute to the variation in prescribing practices and whether these variations influence treatment outcomes., (© 2024 John Wiley & Sons Ltd.)
- Published
- 2024
- Full Text
- View/download PDF
84. A comparison of the TempO-Seq and Affymetrix microarray platform using RTqPCR validation.
- Author
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Wehr MM, Reamon-Buettner SM, Ritter D, Knebel J, Niehof M, and Escher SE
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- High-Throughput Nucleotide Sequencing methods, Humans, Real-Time Polymerase Chain Reaction methods, Oligonucleotide Array Sequence Analysis methods, Gene Expression Profiling methods
- Abstract
Next-generation risk assessment relies on mechanistic data from new approach methods, including transcriptome data. Various technologies, such as high-throughput targeted sequencing methods and microarray technologies based on hybridization with complementary probes, are used to determine differentially expressed genes (DEGs). The integration of data from different technologies requires a good understanding of the differences arising from the use of various technologies.To better understand the differences between the TempO-Seq platform and Affymetrix chip technology, whole-genome data for the volatile compound dimethylamine were compared. Selected DEGs were also confirmed using RTqPCR validation. Although the overlap of DEGs between TempO-Seq and Affymetrix was no higher than 37%, a comparison of the gene regulation in terms of log2fold changes revealed a very high concordance. RTqPCR confirmed the majority of DEGs from either platform in the examined dataset. Only a few conflicts were found (11%), while 22% were not confirmed, and 3% were not detected.Despite the observed differences between the two platforms, both can be validated using RTqPCR. Here we highlight some of the differences between the two platforms and discuss their applications in toxicology., (© 2024. The Author(s).)
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- 2024
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85. Development of a non-target strategy for evaluation of potential biological effects of inhalable aerosols generated during purposeful room conditioning using an in vitro inhalation model.
- Author
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Ritter D, Knebel J, Hansen T, Zifle A, Fuchs A, Fautz R, and Schwarz K
- Subjects
- Humans, Aerosols, Administration, Inhalation, Nebulizers and Vaporizers, Lung
- Abstract
Objectives: An integrated in vitro inhalation approach was outlined to estimate potential adverse acute inhalation effects of aerosols from commercial nebulizer applications used for purposeful room conditioning such as disinfection, scenting or others. Aerosol characterization, exposure estimation and evaluation of acute biological effects by in vitro inhalation were included to generate dose-response data, allowing for determination of in vitro lowest observable adverse effect levels (LOAELs). Correlation of these to estimates of human lung deposition was included for quantitative in vitro to in vivo extrapolation approach (QIVIVE) for acute effects during human exposure., Methods: To test the proposed approach, a case study was undertaken using two realistic test materials. An acute in vitro inhalation setup with air-liquid interface A549-cells in an optimized exposure situation (P.R.I.T.
® ExpoCube® ) was used to expose cells and analysis of relevant biological effects (viability, mitochondrial membrane potential, stress, IL-8 release) was carried out., Results: The observed dose-responsive effects in a sub-toxic dose-range could be attributed to the main component of one test material and its presence in the aerosol phase of the nebulized material. QIVIVE resulted in a factor of at least 256 between the in vitro LOAEL and the estimated acute human lung exposure for this test material., Conclusions: The case-study shows the value of the non-target in vitro inhalation testing approach especially in case of a lack of knowledge on complex product composition. It is expected that approaches like this will be of high value for product safety and environmental health in the future.- Published
- 2023
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86. Substantiate a read-across hypothesis by using transcriptome data-A case study on volatile diketones.
- Author
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Drake C, Wehr MM, Zobl W, Koschmann J, De Lucca D, Kühne BA, Hansen T, Knebel J, Ritter D, Boei J, Vrieling H, Bitsch A, and Escher SE
- Abstract
This case study explores the applicability of transcriptome data to characterize a common mechanism of action within groups of short-chain aliphatic α-, β-, and γ-diketones. Human reference in vivo data indicate that the α-diketone diacetyl induces bronchiolitis obliterans in workers involved in the preparation of microwave popcorn. The other three α-diketones induced inflammatory responses in preclinical in vivo animal studies, whereas beta and gamma diketones in addition caused neuronal effects. We investigated early transcriptional responses in primary human bronchiolar (PBEC) cell cultures after 24 h and 72 h of air-liquid exposure. Differentially expressed genes (DEGs) were assessed based on transcriptome data generated with the EUToxRisk gene panel of Temp-O-Seq
® . For each individual substance, genes were identified displaying a consistent differential expression across dose and exposure duration. The log fold change values of the DEG profiles indicate that α- and β-diketones are more active compared to γ-diketones. α-diketones in particular showed a highly concordant expression pattern, which may serve as a first indication of the shared mode of action. In order to gain a better mechanistic understanding, the resultant DEGs were submitted to a pathway analysis using ConsensusPathDB. The four α-diketones showed very similar results with regard to the number of activated and shared pathways. Overall, the number of signaling pathways decreased from α-to β-to γ-diketones. Additionally, we reconstructed networks of genes that interact with one another and are associated with different adverse outcomes such as fibrosis, inflammation or apoptosis using the TRANSPATH-database. Transcription factor enrichment and upstream analyses with the geneXplain platform revealed highly interacting gene products (called master regulators, MRs) per case study compound. The mapping of the resultant MRs on the reconstructed networks, visualized similar gene regulation with regard to fibrosis, inflammation and apoptosis. This analysis showed that transcriptome data can strengthen the similarity assessment of compounds, which is of particular importance, e.g., in read-across approaches. It is one important step towards grouping of compounds based on biological profiles., Competing Interests: JK was employed by GeneXplain GmbH. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Drake, Wehr, Zobl, Koschmann, De Lucca, Kühne, Hansen, Knebel, Ritter, Boei, Vrieling, Bitsch and Escher.)- Published
- 2023
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87. Topological Phase Transition in Coupled Rock-Paper-Scissors Cycles.
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Knebel J, Geiger PM, and Frey E
- Abstract
A hallmark of topological phases is the occurrence of topologically protected modes at the system's boundary. Here, we find topological phases in the antisymmetric Lotka-Volterra equation (ALVE). The ALVE is a nonlinear dynamical system and describes, for example, the evolutionary dynamics of a rock-paper-scissors cycle. On a one-dimensional chain of rock-paper-scissor cycles, topological phases become manifest as robust polarization states. At the transition point between left and right polarization, solitary waves are observed. This topological phase transition lies in symmetry class D within the "tenfold way" classification as also realized by 1D topological superconductors.
- Published
- 2020
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88. Outcome after Tibial Plateau Levelling Osteotomy and Modified Maquet Procedure in Dogs with Cranial Cruciate Ligament Rupture.
- Author
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Knebel J, Eberle D, Steigmeier-Raith S, Reese S, and Meyer-Lindenberg A
- Subjects
- Animals, Anterior Cruciate Ligament Injuries surgery, Dogs, Osteotomy methods, Prospective Studies, Rupture surgery, Rupture veterinary, Stifle surgery, Tibia surgery, Anterior Cruciate Ligament surgery, Anterior Cruciate Ligament Injuries veterinary, Dog Diseases surgery, Osteotomy veterinary
- Abstract
Objective: The aim of this study was to compare outcomes after tibial plateau levelling osteotomy (TPLO) and modified Maquet procedure (MMP) for the treatment of cranial cruciate ligament rupture (CCLR) in dogs using clinical and radiographic evaluation and treadmill-based force plate gait analysis., Study Design: This study was a prospective, randomized, controlled study., Materials and Methods: Sixty-one dogs (76 joints) with CCLR were treated with TPLO ( n = 30 dogs, 41 joints) or MMP ( n = 31 dogs, 35 joints) and compared with a control group of 16 healthy Labrador Retrievers. Outcomes after surgery were compared by clinical orthopaedic assessment, radiographic evaluation and force plate gait analysis performed preoperatively, and then at 6 weeks, 3 and 6 months postoperatively. For objective comparison of ground reaction forces, the data were compared with the control group. Major complications were reported., Results: A significant improvement in ground reaction forces was reached in all surgically treated dogs. No significant difference was found between the surgical methods at any postoperative re-examination. With regard to peak vertical force (PVF), there were significantly more patients with TPLO within the reference range of healthy dogs at the 3 months re-examination than dogs with MMP. There was no significant difference in mean value comparisons between TPLO and control groups 6 months postoperatively. Compared with the control group, mean values of 93.9% (PVF) and 85.9% (vertical impulse [VI]) were reached by the TPLO group and 89.4% (PVF) and 79.9% (VI) by the MMP group, 6 months postoperatively.No significant differences were found regarding major complications or progression of osteoarthritis., Conclusions: Although no significant differences were found between the surgical methods, TPLO patients showed superiority with regard to clinical outcome., Competing Interests: Dr. Reese reports grants from Gesellschaft zur Förderung Kynologischer Forschung e.V. (GKF), during the conduct of the study., (Georg Thieme Verlag KG Stuttgart · New York.)
- Published
- 2020
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89. In vitro inhalation cytotoxicity testing of therapeutic nanosystems for pulmonary infection.
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Ritter D, Knebel J, Niehof M, Loinaz I, Marradi M, Gracia R, Te Welscher Y, van Nostrum CF, Falciani C, Pini A, Strandh M, and Hansen T
- Subjects
- A549 Cells, Aerosols, Anti-Bacterial Agents administration & dosage, Bacterial Infections drug therapy, Cell Survival drug effects, Humans, Liposomes, Lung drug effects, Lung Diseases drug therapy, Methacrylates administration & dosage, Methacrylates toxicity, Micelles, Nanoparticles administration & dosage, Nylons toxicity, Peptides administration & dosage, Anti-Bacterial Agents toxicity, Nanoparticles toxicity, Peptides toxicity
- Abstract
Due to the increasing need of new treatment options against bacterial lung infections, novel antimicrobial peptides (AMPs) are under development. Local bioavailability and less systemic exposure lead to the inhalation route of administration. Combining AMPs with nanocarriers (NCs) into nanosystems (NSs) might be a technique for improved results. An air-liquid interface (ALI) in vitro inhalation model was set up including a human alveolar lung cell line (A549) and an optimized exposure system (P.R.I.T.® ExpoCube®) to predict acute local lung toxicity. The approach including aerosol controls (cupper-II-sulfate and lactose) delivered lowest observable adverse effect levels (LOAELs). Different combinations of AMPs (AA139, M33) and NCs (polymeric nanoparticles (PNPs), micelles and liposomes) were tested under ALI and submerged in vitro conditions. Depending on the nature of AMP and NCs, packing of AMPs into NSs reduced the AMP-related toxicity. Large differences were found between the LOAELs determined by submerged or ALI testing with the ALI approach indicating higher sensitivity of the ALI model. Since aerosol droplet exposure is in vivo relevant, it is assumed that ALI based results represents the more significant source than submerged testing for in vivo prediction of local acute lung toxicity. In accordance with the current state-of-the-art view, this study shows that ALI in vitro inhalation models are promising tools to further develop in vitro methods in the field of inhalation toxicology., (Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2020
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90. Maintenance of high quality rat precision cut liver slices during culture to study hepatotoxic responses: Acetaminophen as a model compound.
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Granitzny A, Knebel J, Schaudien D, Braun A, Steinberg P, Dasenbrock C, and Hansen T
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- Adenosine Triphosphate metabolism, Albumins metabolism, Animals, Chemical and Drug Induced Liver Injury metabolism, Chemical and Drug Induced Liver Injury pathology, Liver metabolism, Liver pathology, Male, Models, Biological, Organ Culture Techniques, Rats, Wistar, Urea metabolism, Acetaminophen toxicity, Liver drug effects
- Abstract
Precision cut liver slices (PCLiS) represent a promising tool in reflecting hepatotoxic responses. However, the culture of PCLiS varies considerably between laboratories, which can affect the performance of the liver slices and thus the experimental outcome. In this study, we describe an easily accessible culture method, which ensures optimal slice viability and functionality, in order to set the basis for reproducible and comparable PCLiS studies. The quality of the incubated rat PCLiS was assessed during a 24h culture period using ten readouts, which covered viability (lactate dehydrogenase-, aspartate transaminase- and glutamate dehydrogenase-leakage, ATP content) and functionality parameters (urea, albumin production) as well as histomorphology and other descriptive characteristics (protein content, wet weight, slice thickness). The present culture method resulted in high quality liver slices for 24h. Finally, PCLiS were exposed to increasing concentrations of acetaminophen to assess the suitability of the model for the detection of hepatotoxic responses. Six out of ten readouts revealed a toxic effect and showed an excellent mutual correlation. ATP, albumin and histomorphology measurements were identified as the most sensitive readouts. In conclusion, our results indicate that rat PCLiS are a valuable liver model for hepatotoxicity studies, particularly if they are cultured under optimal standardized conditions., (Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2017
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91. Ecological feedback in quorum-sensing microbial populations can induce heterogeneous production of autoinducers.
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Bauer M, Knebel J, Lechner M, Pickl P, and Frey E
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- Models, Biological, Population Dynamics, Bacteria growth & development, Bacteria metabolism, Bacterial Physiological Phenomena, Biological Factors metabolism, Quorum Sensing
- Abstract
Autoinducers are small signaling molecules that mediate intercellular communication in microbial populations and trigger coordinated gene expression via 'quorum sensing'. Elucidating the mechanisms that control autoinducer production is, thus, pertinent to understanding collective microbial behavior, such as virulence and bioluminescence. Recent experiments have shown a heterogeneous promoter activity of autoinducer synthase genes, suggesting that some of the isogenic cells in a population might produce autoinducers, whereas others might not. However, the mechanism underlying this phenotypic heterogeneity in quorum-sensing microbial populations has remained elusive. In our theoretical model, cells synthesize and secrete autoinducers into the environment, up-regulate their production in this self-shaped environment, and non-producers replicate faster than producers. We show that the coupling between ecological and population dynamics through quorum sensing can induce phenotypic heterogeneity in microbial populations, suggesting an alternative mechanism to stochastic gene expression in bistable gene regulatory circuits.
- Published
- 2017
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92. Evaluation of a human in vitro hepatocyte-NPC co-culture model for the prediction of idiosyncratic drug-induced liver injury: A pilot study.
- Author
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Granitzny A, Knebel J, Müller M, Braun A, Steinberg P, Dasenbrock C, and Hansen T
- Abstract
Interactions between hepatocytes and immune cells as well as inflammatory episodes are frequently discussed to play a critical role in the alteration of the individual susceptibility to idiosyncratic drug-induced liver injury (iDILI). To evaluate this hypothesis and to face the urgent need for predictive in vitro models, we established two co-culture systems based on two human cell lines in presence or absence of pro-inflammatory factors (LPS, TNF), i.e. hepatoma HepG2 cells co-cultured with monocytic or macrophage-like THP-1 cells. HepG2 monocultures served as control scenario. Mono- or co-cultures were treated with iDILI reference substances (Troglitazone [TGZ], Trovafloxacin [TVX], Diclofenac [DcL], Ketoconazole [KC]) or their non-iDILI partner compounds (Rosiglitazone, Levofloxacin, Acetylsalicylic Acid, Fluconazole). The liver cell viability was subsequently determined via WST-Assay. An enhanced cytotoxicity (synergy) or a hormetic response compared to the drug effect in the HepG2 monoculture was considered as iDILI positive. TGZ synergized in co-cultures with monocytes without an additional pro-inflammatory stimulus, while DcL and KC showed a hormetic response. All iDILI drugs synergized with TNF in the simple HepG2 monoculture, indicating its relevance as an initiator of iDILI. KC showed a synergy when co-exposed to both, monocytes and LPS, while TVX and DcL showed a synergy under the same conditions with macrophages. All described iDILI responses were not observed with the corresponding non-iDILI partner compounds. Our first results confirm that an inflammatory environment increases the sensitivity of liver cells towards iDILI compounds and point to an involvement of pro-inflammatory factors, especially TNF, in the development of iDILI.
- Published
- 2017
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93. Evolutionary games of condensates in coupled birth-death processes.
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Knebel J, Weber MF, Krüger T, and Frey E
- Subjects
- Algorithms, Biological Evolution, Chemical Phenomena, Game Theory
- Abstract
Condensation phenomena arise through a collective behaviour of particles. They are observed in both classical and quantum systems, ranging from the formation of traffic jams in mass transport models to the macroscopic occupation of the energetic ground state in ultra-cold bosonic gases (Bose-Einstein condensation). Recently, it has been shown that a driven and dissipative system of bosons may form multiple condensates. Which states become the condensates has, however, remained elusive thus far. The dynamics of this condensation are described by coupled birth-death processes, which also occur in evolutionary game theory. Here we apply concepts from evolutionary game theory to explain the formation of multiple condensates in such driven-dissipative bosonic systems. We show that the vanishing of relative entropy production determines their selection. The condensation proceeds exponentially fast, but the system never comes to rest. Instead, the occupation numbers of condensates may oscillate, as we demonstrate for a rock-paper-scissors game of condensates.
- Published
- 2015
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94. [Aetiology, pathogenesis, diagnostics and therapy of cranial cruciate ligament rupture in dogs].
- Author
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Knebel J and Meyer-Lindenberg A
- Subjects
- Animals, Arthroscopy veterinary, Dog Diseases pathology, Dog Diseases therapy, Dogs, Joint Diseases diagnosis, Joint Diseases pathology, Joint Diseases therapy, Anterior Cruciate Ligament Injuries, Dog Diseases diagnosis, Hindlimb injuries, Joint Diseases veterinary
- Abstract
Cranial cruciate ligament rupture is the most common cause of hindlimb disease in dogs and is often associated with an additional lesion of the medial meniscus. The exact aetiopathogenesis of this condition in dogs is unknown. Normally, the degeneration of the ligament first leads to a partial rupture which progresses to a complete rupture following an unspectacular trauma. The positive cranial drawer test confirms the cranial cruciate ligament rupture, however, in some cases, particularly in partial ligament lesions, the diagnosis is not obvious. Therefore, the reexamination of the sedated patient is recommended to generally increase the sensitivity of clinical tests. Magnetic resonance imaging and stifle joint arthroscopy are useful methods to evaluate the cruciate ligaments in indistinct cases or to assess the joint for secondary changes. The therapy of cranial cruciate ligament ruptures can be divided into extra- and intracapsular as well as tibial osteotomies. The principle of the different tibial osteotomies is the muscular compensation of stifle joint instability. The results are successful but not uncritical. This article presents a short review on the substantial problems associated with cranial cruciate ligament rupture in dogs. A more detailed description of secondary problems and complications would exceed the scope of this article and should be considered in another study.
- Published
- 2014
95. Abstracts of Presentations at the International Conference on Basic and Clinical Multimodal Imaging (BaCI), a Joint Conference of the International Society for Neuroimaging in Psychiatry (ISNIP), the International Society for Functional Source Imaging (ISFSI), the International Society for Bioelectromagnetism (ISBEM), the International Society for Brain Electromagnetic Topography (ISBET), and the EEG and Clinical Neuroscience Society (ECNS), in Geneva, Switzerland, September 5-8, 2013.
- Author
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He BJ, Nolte G, Nagata K, Takano D, Yamazaki T, Fujimaki Y, Maeda T, Satoh Y, Heckers S, George MS, Lopes da Silva F, de Munck JC, Van Houdt PJ, Verdaasdonk RM, Ossenblok P, Mullinger K, Bowtell R, Bagshaw AP, Keeser D, Karch S, Segmiller F, Hantschk I, Berman A, Padberg F, Pogarell O, Scharnowski F, Karch S, Hümmer S, Keeser D, Paolini M, Kirsch V, Koller G, Rauchmann B, Kupka M, Blautzik J, Pogarell O, Razavi N, Jann K, Koenig T, Kottlow M, Hauf M, Strik W, Dierks T, Gotman J, Vulliemoz S, Lu Y, Zhang H, Yang L, Worrell G, He B, Gruber O, Piguet C, Hubl D, Homan P, Kindler J, Dierks T, Kim K, Steinhoff U, Wakai R, Koenig T, Kottlow M, Melie-García L, Mucci A, Volpe U, Prinster A, Salvatore M, Galderisi S, Linden DE, Brandeis D, Schroeder CE, Kayser C, Panzeri S, Kleinschmidt A, Ritter P, Walther S, Haueisen J, Lau S, Flemming L, Sonntag H, Maess B, Knösche TR, Lanfer B, Dannhauer M, Wolters CH, Stenroos M, Haueisen J, Wolters C, Aydin U, Lanfer B, Lew S, Lucka F, Ruthotto L, Vorwerk J, Wagner S, Ramon C, Guan C, Ang KK, Chua SG, Kuah WK, Phua KS, Chew E, Zhou H, Chuang KH, Ang BT, Wang C, Zhang H, Yang H, Chin ZY, Yu H, Pan Y, Collins L, Mainsah B, Colwell K, Morton K, Ryan D, Sellers E, Caves K, Throckmorton S, Kübler A, Holz EM, Zickler C, Sellers E, Ryan D, Brown K, Colwell K, Mainsah B, Caves K, Throckmorton S, Collins L, Wennberg R, Ahlfors SP, Grova C, Chowdhury R, Hedrich T, Heers M, Zelmann R, Hall JA, Lina JM, Kobayashi E, Oostendorp T, van Dam P, Oosterhof P, Linnenbank A, Coronel R, van Dessel P, de Bakker J, Rossion B, Jacques C, Witthoft N, Weiner KS, Foster BL, Miller KJ, Hermes D, Parvizi J, Grill-Spector K, Recanzone GH, Murray MM, Haynes JD, Richiardi J, Greicius M, De Lucia M, Müller KR, Formisano E, Smieskova R, Schmidt A, Bendfeldt K, Walter A, Riecher-Rössler A, Borgwardt S, Fusar-Poli P, Eliez S, Schmidt A, Sekihara K, Nagarajan SS, Schoffelen JM, Guggisberg AG, Nolte G, Balazs S, Kermanshahi K, Kiesenhofer W, Binder H, Rattay F, Antal A, Chaieb L, Paulus W, Bodis-Wollner I, Maurer K, Fein G, Camchong J, Johnstone J, Cardenas-Nicolson V, Fiederer LD, Lucka F, Yang S, Vorwerk J, Dümpelmann M, Cosandier-Rimélé D, Schulze-Bonhage A, Aertsen A, Speck O, Wolters CH, Ball T, Fuchs M, Wagner M, Kastner J, Tech R, Dinh C, Haueisen J, Baumgarten D, Hämäläinen MS, Lau S, Vogrin SJ, D'Souza W, Haueisen J, Cook MJ, Custo A, Van De Ville D, Vulliemoz S, Grouiller F, Michel CM, Malmivuo J, Aydin U, Vorwerk J, Küpper P, Heers M, Kugel H, Wellmer J, Kellinghaus C, Scherg M, Rampp S, Wolters C, Storti SF, Boscolo Galazzo I, Del Felice A, Pizzini FB, Arcaro C, Formaggio E, Mai R, Manganotti P, Koessler L, Vignal J, Cecchin T, Colnat-Coulbois S, Vespignani H, Ramantani G, Maillard L, Rektor I, Kuba R, Brázdil M, Chrastina J, Rektorova I, van Mierlo P, Carrette E, Strobbe G, Montes-Restrepo V, Vonck K, Vandenberghe S, Ahmed B, Brodely C, Carlson C, Kuzniecky R, Devinsky O, French J, Thesen T, Bénis D, David O, Lachaux JP, Seigneuret E, Krack P, Fraix V, Chabardès S, Bastin J, Jann K, Gee D, Kilroy E, Cannon T, Wang DJ, Hale JR, Mayhew SD, Przezdzik I, Arvanitis TN, Bagshaw AP, Plomp G, Quairiaux C, Astolfi L, Michel CM, Mayhew SD, Mullinger KJ, Bagshaw AP, Bowtell R, Francis ST, Schouten AC, Campfens SF, van der Kooij H, Koles Z, Lind J, Flor-Henry P, Wirth M, Haase CM, Villeneuve S, Vogel J, Jagust WJ, Kambeitz-Ilankovic L, Simon-Vermot L, Gesierich B, Duering M, Ewers M, Rektorova I, Krajcovicova L, Marecek R, Mikl M, Bracht T, Horn H, Strik W, Federspiel A, Schnell S, Höfle O, Stegmayer K, Wiest R, Dierks T, Müller TJ, Walther S, Surmeli T, Ertem A, Eralp E, Kos IH, Skrandies W, Flüggen S, Klein A, Britz J, Díaz Hernàndez L, Ro T, Michel CM, Lenartowicz A, Lau E, Rodriguez C, Cohen MS, Loo SK, Di Lorenzo G, Pagani M, Monaco L, Daverio A, Giannoudas I, La Porta P, Verardo AR, Niolu C, Fernandez I, Siracusano A, Flor-Henry P, Lind J, Koles Z, Bollmann S, Ghisleni C, O'Gorman R, Poil SS, Klaver P, Michels L, Martin E, Ball J, Eich-Höchli D, Brandeis D, Salisbury DF, Murphy TK, Butera CD, Mathalon DH, Fryer SL, Kiehl KA, Calhoun VC, Pearlson GD, Roach BJ, Ford JM, McGlashan TH, Woods SW, Volpe U, Merlotti E, Vignapiano A, Montefusco V, Plescia GM, Gallo O, Romano P, Mucci A, Galderisi S, Mingoia G, Langbein K, Dietzek M, Wagner G, Smesny, Scherpiet S, Maitra R, Gaser C, Sauer H, Nenadic I, Gonzalez Andino S, Grave de Peralta Menendez R, Grave de Peralta Menendez R, Sanchez Vives M, Rebollo B, Gonzalez Andino S, Frølich L, Andersen TS, Mørup M, Belfiore P, Gargiulo P, Ramon C, Vanhatalo S, Cho JH, Vorwerk J, Wolters CH, Knösche TR, Watanabe T, Kawabata Y, Ukegawa D, Kawabata S, Adachi Y, Sekihara K, Sekihara K, Nagarajan SS, Wagner S, Aydin U, Vorwerk J, Herrmann C, Burger M, Wolters C, Lucka F, Aydin U, Vorwerk J, Burger M, Wolters C, Bauer M, Trahms L, Sander T, Faber PL, Lehmann D, Gianotti LR, Pascual-Marqui RD, Milz P, Kochi K, Kaneko S, Yamashita S, Yana K, Kalogianni K, Vardy AN, Schouten AC, van der Helm FC, Sorrentino A, Luria G, Aramini R, Hunold A, Funke M, Eichardt R, Haueisen J, Gómez-Aguilar F, Vázquez-Olvera S, Cordova-Fraga T, Castro-López J, Hernández-Gonzalez MA, Solorio-Meza S, Sosa-Aquino M, Bernal-Alvarado JJ, Vargas-Luna M, Vorwerk J, Magyari L, Ludewig J, Oostenveld R, Wolters CH, Vorwerk J, Engwer C, Ludewig J, Wolters C, Sato K, Nishibe T, Furuya M, Yamashiro K, Yana K, Ono T, Puthanmadam Subramaniyam N, Hyttinen J, Lau S, Güllmar D, Flemming L, Haueisen J, Sonntag H, Vorwerk J, Wolters CH, Grasedyck L, Haueisen J, Maeß B, Freitag S, Graichen U, Fiedler P, Strohmeier D, Haueisen J, Stenroos M, Hauk O, Grigutsch M, Felber M, Maess B, Herrmann B, Strobbe G, van Mierlo P, Vandenberghe S, Strobbe G, Cárdenas-Peña D, Montes-Restrepo V, van Mierlo P, Castellanos-Dominguez G, Vandenberghe S, Lanfer B, Paul-Jordanov I, Scherg M, Wolters CH, Ito Y, Sato D, Kamada K, Kobayashi T, Dalal SS, Rampp S, Willomitzer F, Arold O, Fouladi-Movahed S, Häusler G, Stefan H, Ettl S, Zhang S, Zhang Y, Li H, Kong X, Montes-Restrepo V, Strobbe G, van Mierlo P, Vandenberghe S, Wong DD, Bidet-Caulet A, Knight RT, Crone NE, Dalal SS, Birot G, Spinelli L, Vulliémoz S, Seeck M, Michel CM, Emory H, Wells C, Mizrahi N, Vogrin SJ, Lau S, Cook MJ, Karahanoglu FI, Grouiller F, Caballero-Gaudes C, Seeck M, Vulliemoz S, Van De Ville D, Spinelli L, Megevand P, Genetti M, Schaller K, Michel C, Vulliemoz S, Seeck M, Genetti M, Tyrand R, Grouiller F, Vulliemoz S, Spinelli L, Seeck M, Schaller K, Michel CM, Grouiller F, Heinzer S, Delattre B, Lazeyras F, Spinelli L, Pittau F, Seeck M, Ratib O, Vargas M, Garibotto V, Vulliemoz S, Vogrin SJ, Bailey CA, Kean M, Warren AE, Davidson A, Seal M, Harvey AS, Archer JS, Papadopoulou M, Leite M, van Mierlo P, Vonck K, Boon P, Friston K, Marinazzo D, Ramon C, Holmes M, Koessler L, Rikir E, Gavaret M, Bartolomei F, Vignal JP, Vespignani H, Maillard L, Centeno M, Perani S, Pier K, Lemieux L, Clayden J, Clark C, Pressler R, Cross H, Carmichael DW, Spring A, Bessemer R, Pittman D, Aghakhani Y, Federico P, Pittau F, Grouiller F, Vulliémoz S, Gotman J, Badier JM, Bénar CG, Bartolomei F, Cruto C, Chauvel P, Gavaret M, Brodbeck V, van Leeuwen T, Tagliazzuchi E, Melloni L, Laufs H, Griskova-Bulanova I, Dapsys K, Klein C, Hänggi J, Jäncke L, Ehinger BV, Fischer P, Gert AL, Kaufhold L, Weber F, Marchante Fernandez M, Pipa G, König P, Sekihara K, Hiyama E, Koga R, Iannilli E, Michel CM, Bartmuss AL, Gupta N, Hummel T, Boecker R, Holz N, Buchmann AF, Blomeyer D, Plichta MM, Wolf I, Baumeister S, Meyer-Lindenberg A, Banaschewski T, Brandeis D, Laucht M, Natahara S, Ueno M, Kobayashi T, Kottlow M, Bänninger A, Koenig T, Schwab S, Koenig T, Federspiel A, Dierks T, Jann K, Natsukawa H, Kobayashi T, Tüshaus L, Koenig T, Kottlow M, Achermann P, Wilson RS, Mayhew SD, Assecondi S, Arvanitis TN, Bagshaw AP, Darque A, Rihs TA, Grouiller F, Lazeyras F, Ha-Vinh Leuchter R, Caballero C, Michel CM, Hüppi PS, Hauser TU, Hunt LT, Iannaccone R, Stämpfli P, Brandeis D, Dolan RJ, Walitza S, Brem S, Graichen U, Eichardt R, Fiedler P, Strohmeier D, Freitag S, Zanow F, Haueisen J, Lordier L, Grouiller F, Van de Ville D, Sancho Rossignol A, Cordero I, Lazeyras F, Ansermet F, Hüppi P, Schläpfer A, Rubia K, Brandeis D, Di Lorenzo G, Pagani M, Monaco L, Daverio A, Giannoudas I, Verardo AR, La Porta P, Niolu C, Fernandez I, Siracusano A, Tamura K, Karube C, Mizuba T, Matsufuji M, Takashima S, Iramina K, Assecondi S, Ostwald D, Bagshaw AP, Marecek R, Brazdil M, Lamos M, Slavícek T, Marecek R, Jan J, Meier NM, Perrig W, Koenig T, Minami T, Noritake Y, Nakauchi S, Azuma K, Minami T, Nakauchi S, Rodriguez C, Lenartowicz A, Cohen MS, Rodriguez C, Lenartowicz A, Cohen MS, Iramina K, Kinoshita H, Tamura K, Karube C, Kaneko M, Ide J, Noguchi Y, Cohen MS, Douglas PK, Rodriguez CM, Xia HJ, Zimmerman EM, Konopka CJ, Epstein PS, Konopka LM, Giezendanner S, Fisler M, Soravia L, Andreotti J, Wiest R, Dierks T, Federspiel A, Razavi N, Federspiel A, Dierks T, Hauf M, Jann K, Kamada K, Sato D, Ito Y, Okano K, Mizutani N, Kobayashi T, Thelen A, Murray M, Pastena L, Formaggio E, Storti SF, Faralli F, Melucci M, Gagliardi R, Ricciardi L, Ruffino G, Coito A, Macku P, Tyrand R, Astolfi L, He B, Wiest R, Seeck M, Michel C, Plomp G, Vulliemoz S, Fischmeister FP, Glaser J, Schöpf V, Bauer H, Beisteiner R, Deligianni F, Centeno M, Carmichael DW, Clayden J, Mingoia G, Langbein K, Dietzek M, Wagner G, Smesny S, Scherpiet S, Maitra R, Gaser C, Sauer H, Nenadic I, Dürschmid S, Zaehle T, Pannek H, Chang HF, Voges J, Rieger J, Knight RT, Heinze HJ, Hinrichs H, Tsatsishvili V, Cong F, Puoliväli T, Alluri V, Toiviainen P, Nandi AK, Brattico E, Ristaniemi T, Grieder M, Crinelli RM, Jann K, Federspiel A, Wirth M, Koenig T, Stein M, Wahlund LO, Dierks T, Atsumori H, Yamaguchi R, Okano Y, Sato H, Funane T, Sakamoto K, Kiguchi M, Tränkner A, Schindler S, Schmidt F, Strauß M, Trampel R, Hegerl U, Turner R, Geyer S, Schönknecht P, Kebets V, van Assche M, Goldstein R, van der Meulen M, Vuilleumier P, Richiardi J, Van De Ville D, Assal F, Wozniak-Kwasniewska A, Szekely D, Harquel S, Bougerol T, David O, Bracht T, Jones DK, Horn H, Müller TJ, Walther S, Sos P, Klirova M, Novak T, Brunovsky M, Horacek J, Bares M, Hoschl C C, Fellhauer I, Zöllner FG, Schröder J, Kong L, Essig M, Schad LR, Arrubla J, Neuner I, Hahn D, Boers F, Shah NJ, Neuner I, Arrubla J, Hahn D, Boers F, Jon Shah N, Suriya Prakash M, Sharma R, Kawaguchi H, Kobayashi T, Fiedler P, Griebel S, Biller S, Fonseca C, Vaz F, Zentner L, Zanow F, Haueisen J, Rochas V, Rihs T, Thut G, Rosenberg N, Landis T, Michel C, Moliadze V, Schmanke T, Lyzhko E, Bassüner S, Freitag C, Siniatchkin M, Thézé R, Guggisberg AG, Nahum L, Schnider A, Meier L, Friedrich H, Jann K, Landis B, Wiest R, Federspiel A, Strik W, Dierks T, Witte M, Kober SE, Neuper C, Wood G, König R, Matysiak A, Kordecki W, Sieluzycki C, Zacharias N, Heil P, Wyss C, Boers F, Arrubla J, Dammers J, Kawohl W, Neuner I, Shah NJ, Braboszcz C, Cahn RB, Levy J, Fernandez M, Delorme A, Rosas-Martinez L, Milne E, Zheng Y, Urakami Y, Kawamura K, Washizawa Y, Hiyoshi K, Cichocki A, Giroud N, Dellwo V, Meyer M, Rufener KS, Liem F, Dellwo V, Meyer M, Jones-Rounds JD, Raizada R, Staljanssens W, Strobbe G, van Mierlo P, Van Holen R, Vandenberghe S, Pefkou M, Becker R, Michel C, Hervais-Adelman A, He W, Brock J, Johnson B, Ohla K, Hitz K, Heekeren K, Obermann C, Huber T, Juckel G, Kawohl W, Gabriel D, Comte A, Henriques J, Magnin E, Grigoryeva L, Ortega JP, Haffen E, Moulin T, Pazart L, Aubry R, Kukleta M, Baris Turak B, Louvel J, Crespo-Garcia M, Cantero JL, Atienza M, Connell S, Kilborn K, Damborská A, Brázdil M, Rektor I, Kukleta M, Koberda JL, Bienkiewicz A, Koberda I, Koberda P, Moses A, Tomescu M, Rihs T, Britz J, Custo A, Grouiller F, Schneider M, Debbané M, Eliez S, Michel C, Wang GY, Kydd R, Wouldes TA, Jensen M, Russell BR, Dissanayaka N, Au T, Angwin A, O'Sullivan J, Byrne G, Silburn P, Marsh R, Mellic G, Copland D, Bänninger A, Kottlow M, Díaz Hernàndez L, Koenig T, Díaz Hernàndez L, Bänninger A, Koenig T, Hauser TU, Iannaccone R, Mathys C, Ball J, Drechsler R, Brandeis D, Walitza S, Brem S, Boeijinga PH, Pang EW, Valica T, Macdonald MJ, Oh A, Lerch JP, Anagnostou E, Di Lorenzo G, Pagani M, Monaco L, Daverio A, Verardo AR, Giannoudas I, La Porta P, Niolu C, Fernandez I, Siracusano A, Shimada T, Matsuda Y, Monkawa A, Monkawa T, Hashimoto R, Watanabe K, Kawasaki Y, Matsuda Y, Shimada T, Monkawa T, Monkawa A, Watanabe K, Kawasaki Y, Stegmayer K, Horn H, Federspiel A, Razavi N, Bracht T, Laimböck K, Strik W, Dierks T, Wiest R, Müller TJ, Walther S, Koorenhof LJ, Swithenby SJ, Martins-Mourao A, Rihs TA, Tomescu M, Song KW, Custo A, Knebel JF, Murray M, Eliez S, Michel CM, Volpe U, Merlotti E, Vignapiano A, Montefusco V, Plescia GM, Gallo O, Romano P, Mucci A, Galderisi S, Laimboeck K, Jann K, Walther S, Federspiel A, Wiest R, Strik W, and Horn H
- Published
- 2013
- Full Text
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96. High variation of fluorescence protein maturation times in closely related Escherichia coli strains.
- Author
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Hebisch E, Knebel J, Landsberg J, Frey E, and Leisner M
- Subjects
- Colicins metabolism, Escherichia coli growth & development, Plasmids metabolism, Time Factors, Red Fluorescent Protein, Escherichia coli metabolism, Green Fluorescent Proteins metabolism, Luminescent Proteins metabolism
- Abstract
Fluorescent proteins (FPs) are widely used in biochemistry, biology and biophysics. For quantitative analysis of gene expression FPs are often used as marking molecules. Therefore, sufficient knowledge of maturation times and their affecting factors is of high interest. Here, we investigate the maturation process of the FPs GFP and mCherry expressed by the three closely related Escherichia coli strains of the Colicin E2 system, a model system for colicinogenic interaction. One strain, the C strain produces Colicin, a toxin to which the S strain is sensitive, and against which the R strain is resistant. Under the growth conditions used in this study, the S and R strain have similar growth rates, as opposed to the C strain whose growth rate is significantly reduced due to the toxin production. In combination with theoretical modelling we studied the maturation kinetics of the two FPs in these strains and could confirm an exponential and sigmoidal maturation kinetic for GFP and mCherry, respectively. Our subsequent quantitative experimental analysis revealed a high variance in maturation times independent of the strain studied. In addition, we determined strain dependent maturation times and maturation behaviour. Firstly, FPs expressed by the S and R strain mature on similar average time-scales as opposed to FPs expressed by the C strain. Secondly, dependencies of maturation time with growth conditions are most pronounced in the GFP expressing C strain: Doubling the growth rate of this C strain results in an increased maturation time by a factor of 1.4. As maturation times can vary even between closely related strains, our data emphasize the importance of profound knowledge of individual strains' maturation times for accurate interpretation of gene expression data.
- Published
- 2013
- Full Text
- View/download PDF
97. Evaluation of MRI issues for a new neurological implant, the Sensor Reservoir.
- Author
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Shellock FG, Knebel J, and Prat AD
- Subjects
- Artifacts, Electromagnetic Fields, Equipment Design, Equipment Failure Analysis instrumentation, Equipment Safety instrumentation, Humans, Intracranial Pressure, Magnetic Fields, Monitoring, Physiologic instrumentation, Prosthesis Design, Reproducibility of Results, Temperature, Magnetic Resonance Imaging methods, Prostheses and Implants
- Abstract
Background and Purpose: A new neurological implant, the Sensor-Reservoir, was developed to provide a relative measurement of ICP, which permits a noninvasive technique to detect and localize occlusions in ventricular drainage systems and, thus, to identify mechanical damage to shunt valves. The "reservoir" of this device can be used to administer medication or a contrast agent, to extract cerebral spinal fluid (CSF), and with the possibility of directly measuring ICP. The Sensor-Reservoir was evaluated to identify possible MRI-related issues at 1.5-T/64-MHz and 3-T/128-MHz., Materials and Methods: Standard testing techniques were utilized to evaluate magnetic field interactions (i.e., translational attraction and torque), MRI-related heating, and artifacts at 3-T for the Sensor-Reservoir. In addition, 12 samples of the Sensor-Reservoir underwent testing to determine if the function of these devices was affected by exposures to various MRI conditions at 1.5-T/64-MHz and 3-T/128-MHz., Results: Magnetic field interactions for the Sensor-Reservoir were not substantial. The heating results indicated a highest temperature rise of 1.8 °C, which poses no patient risks. Artifacts were relatively small in relation to the size and shape of the Sensor-Reservoir, but may interfere diagnostically if the area of interest is near the device. All devices were unaffected by exposures to MRI conditions at 1.5-T/64-MHz and 3-T/128-MHz., Conclusion: When specific guidelines are followed, the Sensor-Reservoir is "MR conditional" for patients undergoing MRI examinations at 3-T or less., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
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98. Coexistence and survival in conservative Lotka-Volterra networks.
- Author
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Knebel J, Krüger T, Weber MF, and Frey E
- Subjects
- Biomass, Extinction, Biological, Population Dynamics, Ecosystem, Models, Biological
- Abstract
Analyzing coexistence and survival scenarios of Lotka-Volterra (LV) networks in which the total biomass is conserved is of vital importance for the characterization of long-term dynamics of ecological communities. Here, we introduce a classification scheme for coexistence scenarios in these conservative LV models and quantify the extinction process by employing the Pfaffian of the network's interaction matrix. We illustrate our findings on global stability properties for general systems of four and five species and find a generalized scaling law for the extinction time.
- Published
- 2013
- Full Text
- View/download PDF
99. Genotoxicity testing in vitro - development of a higher throughput analysis method based on the comet assay.
- Author
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Ritter D and Knebel J
- Subjects
- DNA Damage, Humans, Image Processing, Computer-Assisted, Comet Assay methods, High-Throughput Screening Assays methods
- Abstract
Higher throughput methods, high content analysis and automated screening methods are of highest demand in drug development today. In toxicology, these strategies are becoming increasingly important, as well. Therefore, an integrated higher throughput method for the comet assay is addressed by the development presented here. The sensitivity, specificity and relevance of the comet assay as a method for determination of DNA damage in vivo and in vitro have been highlighted in many studies. Actually, efforts are made to include it in a panel of genotoxicity tests for regulatory purposes. However, the standard comet assay is a time consuming procedure due to the specific methods needed. The improvements presented here lead to a faster and easier slide-production, a smaller amount of cells needed, a higher amount of comets quantified, a fully automated analysis of comets including reanalysis, storing, visualisation and documentation possibilities using standard comet quantification models such as tail length or tail moment, and - by introduction of clearly definable selection criteria based on image analysis algorithms - clearly improve objectivity and standardization of the analysis procedure. Results prove the high reproducibility, flexibility, efficiency and suitability of the procedure as a fully automated analysis method in higher throughput genotoxicity testing in vitro.
- Published
- 2009
- Full Text
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100. Repression of transcription by TSGA/Jmjd1a, a novel interaction partner of the ETS protein ER71.
- Author
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Knebel J, De Haro L, and Janknecht R
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cell Nucleus genetics, Cell Nucleus metabolism, Cells, Cultured, Cloning, Molecular, Female, Histone Demethylases, Humans, Jumonji Domain-Containing Histone Demethylases, Male, Matrix Metalloproteinase 1 genetics, Mice, Molecular Sequence Data, Oxidoreductases, N-Demethylating, Promoter Regions, Genetic, Protein Structure, Tertiary, Repressor Proteins genetics, Repressor Proteins metabolism, Sequence Homology, Amino Acid, Transcription Factors genetics, Transcription, Genetic, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Nuclear Proteins genetics, Nuclear Proteins metabolism, Transcription Factors metabolism
- Abstract
Testis-specific gene A (TSGA) was originally identified in rat and shown to be expressed within the testes. Here, we have cloned the murine homolog [also known as jumonji domain-containing 1a (Jmjd1a)] and for the first time characterized the TSGA protein and its functions. Although murine TSGA is expressed in testes, its mRNA is also present in many other tissues, including heart, thymus, liver, and skin. Immunostaining revealed that TSGA is a nuclear protein, whose N-terminus contains a putative nuclear localization signal. TSGA displays significant homology to a suspected tumor suppressor and coactivator (5qNCA), to a thyroid hormone receptor interacting protein (TRIP8) and to the corepressor Hairless, pointing at a role of TSGA in transcription regulation. Indeed, TSGA contains several functional transcription repression domains. In addition, TSGA interacts both in vitro and in vivo with ER71 (ETS related 71), a transcription factor that is expressed in the testes of adult mice and during embryogenesis. Specifically, the N-terminus of TSGA and the C-terminus of ER71 are primarily engaged in their complex formation. Furthermore, TSGA impairs the ability of ER71 to activate transcription from the matrix metalloproteinase-1 promoter. Thus, TSGA may modulate the function of ER71 and thereby affect spermatogenesis as well as embryonic development.
- Published
- 2006
- Full Text
- View/download PDF
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