51. The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet
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Chunhai Chen, Xiaojuan Cao, Xueqiao Qian, Shaokui Yi, Bingnan Liu, Ingo Ebersberger, Xiaodong Fang, Han Liu, Shancen Zhao, Yongming Gu, Xiewu Jiang, Ruifang Lai, Weimin Wang, Zexia Gao, Manfred Schartl, Huimin Cai, Ruibin Yang, Xiaoyun Zhou, Xinhui Zhang, Jianwei Chen, Mingzhou Bai, Jiumeng Min, Hong Liu, Huan-Ling Wang, Kai-Jian Wei, Jiang Li, Wei Luo, Yu-Hua Zhao, Jun-Hui Chen, Meng Xu, Boxiang Chen, Jianbo Jian, and Jin Wei
- Subjects
Fish Proteins ,0301 basic medicine ,intermuscular bone ,gut microflora ,Cyprinidae ,Zoology ,Health Informatics ,Biology ,Receptors, Odorant ,Genome ,Bone and Bones ,Evolution, Molecular ,Transcriptome ,03 medical and health sciences ,Aquaculture ,herbivorous diet ,Animals ,Herbivory ,ddc:610 ,Megalobrama ,whole genome ,business.industry ,Research ,Aquatic animal ,biology.organism_classification ,Adaptation, Physiological ,Gastrointestinal Microbiome ,Computer Science Applications ,Fishery ,030104 developmental biology ,Megalobrama amblycephala ,Adaptation ,business - Abstract
The blunt snout bream Megalobrama amblycephala is the economically most important cyprinid fish species. As an herbivore, it can be grown by eco-friendly and resource-conserving aquaculture. However, the large number of intermuscular bones in the trunk musculature is adverse to fish meat processing and consumption. As a first towards optimizing this aquatic livestock, we present a 1.116-Gb draft genome of M. amblycephala, with 779.54 Mb anchored on 24 linkage groups. Integrating spatiotemporal transcriptome analyses, we show that intermuscular bone is formed in the more basal teleosts by intramembranous ossification and may be involved in muscle contractibility and coordinating cellular events. Comparative analysis revealed that olfactory receptor genes, especially of the beta type, underwent an extensive expansion in herbivorous cyprinids, whereas the gene for the umami receptor T1R1 was specifically lost in M. amblycephala. The composition of gut microflora, which contributes to the herbivorous adaptation of M. amblycephala, was found to be similar to that of other herbivores. As a valuable resource for the improvement of M. amblycephala livestock, the draft genome sequence offers new insights into the development of intermuscular bone and herbivorous adaptation.
- Published
- 2017
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